RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3272
(115 letters)
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 94.1 bits (234), Expect = 6e-24
Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 47/153 (30%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SW++D + + + + ++ I NV S D G Y C A N++G +++
Sbjct: 417 SWHKDKRELRSG--KKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITL 474
Query: 65 SV---------------------------------------------SDRRLMETRGNKH 79
SD + N
Sbjct: 475 KAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIA 534
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
TL + + G Y+C N G + + LS
Sbjct: 535 TLQFSRAEPANAGKYTCQIKNEAGTQECFATLS 567
Score = 87.9 bits (218), Expect = 8e-22
Identities = 29/152 (19%), Positives = 46/152 (30%), Gaps = 46/152 (30%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
WY+D I+ S + M + L + N+ D G+Y+C A N G A L V
Sbjct: 324 LWYKDETEIQES--SKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV 381
Query: 65 SV--------------------------------------------SDRRLMETRGNKHT 80
+ + + +
Sbjct: 382 KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS 441
Query: 81 LTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+ I NV S D G Y C A N++G ++
Sbjct: 442 IHILNVDSADIGEYQCKASNDVGSDTCVGSIT 473
Score = 84.5 bits (209), Expect = 1e-20
Identities = 33/155 (21%), Positives = 45/155 (29%), Gaps = 49/155 (31%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SWY+D L++ N TL I + G Y+C A N LG A +L++
Sbjct: 134 SWYKDGELLKDD--ANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTL 191
Query: 65 SV-----------------------------------------------SDRRLMETRGN 77
S M N
Sbjct: 192 SEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN 251
Query: 78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
TLT+ V D G Y+C A N G+ +L
Sbjct: 252 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG 286
Score = 84.1 bits (208), Expect = 2e-20
Identities = 32/153 (20%), Positives = 44/153 (28%), Gaps = 47/153 (30%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+W +D I P M N TLT+ V D G Y+C A N G+ +L V
Sbjct: 230 TWAKDNREIRPG--GNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 287
Query: 65 SV---------------------------------------------SDRRLMETRGNKH 79
S + M +
Sbjct: 288 QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 347
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
L + N+ D G+Y+C A N G A L
Sbjct: 348 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK 380
Score = 81.0 bits (200), Expect = 2e-19
Identities = 28/155 (18%), Positives = 48/155 (30%), Gaps = 49/155 (31%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+WY++ + + + + M+ + N +L I V +D G Y+C A+N++G L +
Sbjct: 38 AWYKEHTKLRSAPAYK--MQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVI 95
Query: 65 SV-----------------------------------------------SDRRLMETRGN 77
N
Sbjct: 96 KERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHN 155
Query: 78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
TL I + G Y+C A N LG A +L+
Sbjct: 156 VATLQILQTDQSHVGQYNCSASNPLGTASSSAKLT 190
Score = 64.1 bits (156), Expect = 2e-13
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+W++D I SD + N TL + + G Y+C N G + + LSV
Sbjct: 510 AWFKDKGEIVRE-SDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 89.0 bits (221), Expect = 9e-24
Identities = 34/155 (21%), Positives = 47/155 (30%), Gaps = 47/155 (30%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SW++D +I S + + LTI V + G YS A N G+A EL V
Sbjct: 38 SWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLV 97
Query: 65 SV-----------------------------------------------SDRRLMETRGN 77
S + G+
Sbjct: 98 KAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGD 157
Query: 78 KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
++L I D G YS A N++GRA EL
Sbjct: 158 LYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELL 192
Score = 60.5 bits (147), Expect = 9e-13
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+Y+D I+ S + G+ ++L I D G YS A N++GRA EL V
Sbjct: 136 KFYRDGAEIQSS--LDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 87.8 bits (218), Expect = 4e-23
Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 50/156 (32%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
WY+ + S + M + G HTLT+ + D G Y+C+A N +G + +L +
Sbjct: 40 KWYRFGKELIQS--RKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLL 97
Query: 65 SV-----------------------------------------------SDRRLMETRGN 77
S+ +E +
Sbjct: 98 QATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEH 157
Query: 78 KHTLTIKNVQS-TDFGNYSCVADNNLGRAKKYMELS 112
L +KNVQ T G Y N G +++
Sbjct: 158 YTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVE 193
Score = 58.2 bits (141), Expect = 6e-12
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQS-TDFGNYSCVADNNLGRAKKYMELS 63
+W+ L++ S + +E + L +KNVQ T G Y N G +++
Sbjct: 136 TWFHGQKLLQNS--ENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVE 193
Query: 64 V 64
+
Sbjct: 194 I 194
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 88.6 bits (220), Expect = 8e-23
Identities = 29/152 (19%), Positives = 46/152 (30%), Gaps = 46/152 (30%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
WY+D I+ S + M + L + N+ D G+Y+C A N G A L V
Sbjct: 132 LWYKDETEIQES--SKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV 189
Query: 65 SV--------------------------------------------SDRRLMETRGNKHT 80
+ + + +
Sbjct: 190 KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS 249
Query: 81 LTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+ I NV S D G Y C A N++G ++
Sbjct: 250 IHILNVDSADIGEYQCKASNDVGSYTCVGSIT 281
Score = 88.6 bits (220), Expect = 9e-23
Identities = 32/153 (20%), Positives = 44/153 (28%), Gaps = 47/153 (30%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+W +D I P M N TLT+ V D G Y+C A N G+ +L V
Sbjct: 38 TWAKDNREIRPG--GNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 95
Query: 65 SV---------------------------------------------SDRRLMETRGNKH 79
S + M +
Sbjct: 96 QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 155
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
L + N+ D G+Y+C A N G A L
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK 188
Score = 62.1 bits (151), Expect = 7e-13
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SW++D + + + + ++ I NV S D G Y C A N++G +++
Sbjct: 225 SWHKDKRELRSG--KKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 84.1 bits (208), Expect = 1e-21
Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 54/158 (34%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SW+++ LIE + ++ +++ G+ LT++N+ ++D G Y C A N G +K L V
Sbjct: 37 SWFRNGKLIEEN--EKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 92
Query: 65 SV--------------------------------------------------SDRRLMET 74
V R ++
Sbjct: 93 FVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKG 152
Query: 75 RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+ +L IK+V+ +D G Y C A + +G +K M L
Sbjct: 153 QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD 190
Score = 58.7 bits (142), Expect = 5e-12
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 5 SWYQDTFLIEPS-----VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY 59
+W + + + R ++ + +L IK+V+ +D G Y C A + +G +K
Sbjct: 127 TWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKS 186
Query: 60 MELSV 64
M L +
Sbjct: 187 MYLDI 191
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 82.8 bits (205), Expect = 3e-21
Identities = 29/158 (18%), Positives = 40/158 (25%), Gaps = 50/158 (31%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
WY+ I R+ E +G H L I +V D Y A N G L V
Sbjct: 37 KWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEV 96
Query: 65 SV-------------------------------------------------SDRRLMETR 75
V + +
Sbjct: 97 EVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT 156
Query: 76 GNKHTLT-IKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+ +L V+ D G Y A N G +K +EL
Sbjct: 157 RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194
Score = 55.1 bits (133), Expect = 8e-11
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLT-IKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
+W + LI+ + + + +L V+ D G Y A N G +K +EL
Sbjct: 137 TWQKGQDLIDNN--GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194
Query: 64 V 64
V
Sbjct: 195 V 195
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 82.1 bits (203), Expect = 3e-20
Identities = 30/157 (19%), Positives = 41/157 (26%), Gaps = 50/157 (31%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
WY+ I R+ E +G H L I +V D Y A N G L V
Sbjct: 37 KWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEV 96
Query: 65 SV--------------------------------------------------SDRRLMET 74
V +++ T
Sbjct: 97 EVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT 156
Query: 75 RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
R + V+ D G Y A N G +K +EL
Sbjct: 157 RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
Score = 57.1 bits (138), Expect = 5e-11
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
++W + LI+ + +++ TR + V+ D G Y A N G +K +EL
Sbjct: 136 ITWQKGQDLIDNN-GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194
Query: 64 V 64
V
Sbjct: 195 V 195
Score = 53.2 bits (128), Expect = 1e-09
Identities = 14/52 (26%), Positives = 18/52 (34%)
Query: 61 ELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
E+ R+ E +G H L I +V D Y A N G L
Sbjct: 44 EIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLE 95
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 80.7 bits (199), Expect = 2e-19
Identities = 27/153 (17%), Positives = 47/153 (30%), Gaps = 49/153 (32%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY-MELS 63
+++++ + + DR R + L K D G Y+C DN +G+ +K+ ++L+
Sbjct: 245 NYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLT 304
Query: 64 VSV--------------------------------------------SDRRLMETRGNKH 79
V R +
Sbjct: 305 VVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTD----S 360
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
L IK V++ D G Y C A N G +
Sbjct: 361 GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393
Score = 55.3 bits (133), Expect = 2e-10
Identities = 25/158 (15%), Positives = 36/158 (22%), Gaps = 60/158 (37%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA-------- 56
SW +D + L + G +L Q++D G+Y C A+ G A
Sbjct: 40 SWKKDGKSYNWQEHNAALRKDEG---SLVFLRPQASDEGHYQCFAETPAGVASSRVISFR 96
Query: 57 --------------------------------------------KKYMELSVSVSDRRLM 72
V+ DRR+
Sbjct: 97 KTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRIT 156
Query: 73 ETRGNKHTLTIKNVQSTD---FGNYSCVADNNLGRAKK 107
L V D Y C A N +
Sbjct: 157 AGPDG--NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEV 192
Score = 54.1 bits (130), Expect = 5e-10
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W + +P R + L IK V++ D G Y C A N G + V
Sbjct: 342 VWSHNA---KPLSGGRATVTD----SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Query: 65 S 65
+
Sbjct: 395 N 395
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 77.9 bits (192), Expect = 2e-18
Identities = 29/162 (17%), Positives = 51/162 (31%), Gaps = 51/162 (31%)
Query: 5 SWYQDTFLIEPSVSD-----RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY 59
+W + + D R ++ + +L IK+V+ +D G Y C A + +G +K
Sbjct: 33 TWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKS 92
Query: 60 MELSVSV----------------------------------------------SDRRLME 73
M L + +
Sbjct: 93 MYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTY 152
Query: 74 TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
+ G K L I DFG Y+C A N++G + L+ +
Sbjct: 153 STGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALAD 194
Score = 58.7 bits (142), Expect = 1e-11
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
+ W +D ++ + + G K L I DFG Y+C A N++G + L+
Sbjct: 132 IHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILA 191
Query: 64 V 64
+
Sbjct: 192 L 192
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 76.4 bits (188), Expect = 7e-18
Identities = 31/152 (20%), Positives = 43/152 (28%), Gaps = 51/152 (33%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+W + +I+ L+ L I NV D G Y+CV EL+V
Sbjct: 254 TWLRGEEVIQLRSKKYSLLGG----SNLLISNVTDDDSGTYTCVVTYKNENISASAELTV 309
Query: 65 SV--------------------------------------------SDRRLMETRGNKHT 80
V SD +
Sbjct: 310 LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGS---N 366
Query: 81 LTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
L I V +D G Y CVA+N G A+ +L
Sbjct: 367 LRILGVVKSDEGFYQCVAENEAGNAQSSAQLI 398
Score = 73.7 bits (181), Expect = 6e-17
Identities = 28/157 (17%), Positives = 42/157 (26%), Gaps = 51/157 (32%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG-RAKKYMELS 63
W ++ + P D R++ L I +Q D G Y C A N R E+
Sbjct: 154 HWQKNQQDLNPIPGDSRVVVLPSG--ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVR 211
Query: 64 VSVS------------------------------------------DRRLMETRGNKH-- 79
+ +++ R K+
Sbjct: 212 ILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSL 271
Query: 80 ----TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
L I NV D G Y+CV EL+
Sbjct: 272 LGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELT 308
Score = 57.9 bits (140), Expect = 2e-11
Identities = 26/151 (17%), Positives = 39/151 (25%), Gaps = 54/151 (35%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNV-----QSTDFGNYSCVADNNLGRAKKY 59
W +D ++ + DR+ G +L I+N+ D G Y C A +
Sbjct: 55 KWKKDGLILALGMDDRKQQLPNG---SLLIQNILHSRHHKPDEGLYQCEASLGDSGSIIS 111
Query: 60 MELSVSVS---------------------------------------DRRLMETRGNKH- 79
V V+ + L G+
Sbjct: 112 RTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRV 171
Query: 80 ------TLTIKNVQSTDFGNYSCVADNNLGR 104
L I +Q D G Y C A N
Sbjct: 172 VVLPSGALQISRLQPGDSGVYRCSARNPAST 202
Score = 55.2 bits (133), Expect = 2e-10
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+W ++ ++ PS D + L I V +D G Y CVA+N G A+ +L V
Sbjct: 345 NWMKNGDVVIPS--DYFQIVGGS---NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 75.2 bits (185), Expect = 1e-17
Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 44/150 (29%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG-RAKKYMELS 63
+W++D ++PS S+ R+ + R L I++ + TD G Y CVA N+ G R L
Sbjct: 141 TWFKDFLPVDPSASNGRIKQLRS--GALQIESSEETDQGKYECVATNSAGVRYSSPANLY 198
Query: 64 VSV-----------SDRRLME--------------------TRGNK----------HTLT 82
V V +M +G +
Sbjct: 199 VRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNV 258
Query: 83 IKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
++ D NY+CVA ++LG + +++
Sbjct: 259 LELTDVKDSANYTCVAMSSLGVIEAVAQIT 288
Score = 64.1 bits (156), Expect = 1e-13
Identities = 26/151 (17%), Positives = 44/151 (29%), Gaps = 53/151 (35%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQST-DFGNYSCVADNNLGRAKKYMELS 63
+W + + + L I+ +++ D Y CVA N++G + +L+
Sbjct: 39 TWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLT 97
Query: 64 VSVSDRRLM------------------------ETRGN---------------------- 77
V D+ GN
Sbjct: 98 VLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGR 157
Query: 78 -----KHTLTIKNVQSTDFGNYSCVADNNLG 103
L I++ + TD G Y CVA N+ G
Sbjct: 158 IKQLRSGALQIESSEETDQGKYECVATNSAG 188
Score = 48.3 bits (115), Expect = 6e-08
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W Q + P D + ++ D NY+CVA ++LG + +++V
Sbjct: 238 KWMQGAEDLTPE--DDMPV------GRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITV 289
Score = 41.7 bits (98), Expect = 1e-05
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 65 SVSDRRLMETRGNKHTLTIKNVQST-DFGNYSCVADNNLGRAKKYMELS 112
S + L I+ +++ D Y CVA N++G + +L+
Sbjct: 49 SQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLT 97
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 73.2 bits (180), Expect = 1e-17
Identities = 37/146 (25%), Positives = 53/146 (36%), Gaps = 51/146 (34%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM-ELS 63
SW ++ LI+ + + E N LTI +V+ +D G Y C A+N +G A + L
Sbjct: 40 SWTRNKILIKLFDTRYSIRE---NGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQ 96
Query: 64 VSV--------------------------------------------SDRRLMETRGNKH 79
V + + R + G
Sbjct: 97 VKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG--- 153
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRA 105
+L I NVQ D G Y CVA N+LG A
Sbjct: 154 SLRIHNVQKEDAGQYRCVAKNSLGTA 179
Score = 57.8 bits (140), Expect = 1e-11
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELS 63
SW + + + R + G +L I NVQ D G Y CVA N+LG A K ++L
Sbjct: 133 SWIKGDSALREN--SRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLE 187
Query: 64 VSV 66
V V
Sbjct: 188 VEV 190
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 72.2 bits (177), Expect = 4e-17
Identities = 27/158 (17%), Positives = 45/158 (28%), Gaps = 52/158 (32%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY-MELS 63
W + F + ++ RR + L I NV+++D GNYSC + + +
Sbjct: 43 RWLLNEFPVFITMDKRRFVSQTN--GNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIP 100
Query: 64 VSVSDRRLME-------------------------------------------------T 74
+ R +
Sbjct: 101 LIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEI 160
Query: 75 RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+ L I N+Q D G Y C A+N G+ K +
Sbjct: 161 STSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIY 198
Score = 49.5 bits (118), Expect = 1e-08
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W + + + E + L I N+Q D G Y C A+N G+ K + V
Sbjct: 146 RWRKVLEPMPSTA------EISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 71.4 bits (175), Expect = 6e-17
Identities = 22/143 (15%), Positives = 40/143 (27%), Gaps = 46/143 (32%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY-MELS 63
+ I + R +++ G + LTI N D G Y C A + G+ ++ + L
Sbjct: 35 WYNPQGEKIIST--QRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLE 92
Query: 64 VSVS-------------------------------------DRRLMETRGNK------HT 80
+ + + N+ +
Sbjct: 93 IYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN 152
Query: 81 LTIKNVQSTDFGNYSCVADNNLG 103
L I N+ +D G Y C
Sbjct: 153 LQILNINKSDEGIYRCEGRVEAR 175
Score = 52.5 bits (126), Expect = 7e-10
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SW + +R M L I N+ +D G Y C + ++ V
Sbjct: 129 SWLYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV 185
Query: 65 SVS 67
V+
Sbjct: 186 IVN 188
Score = 52.1 bits (125), Expect = 1e-09
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
+ + R +++ G + LTI N D G Y C A + G+ +
Sbjct: 43 IISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQ 85
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 71.9 bits (176), Expect = 3e-16
Identities = 27/142 (19%), Positives = 44/142 (30%), Gaps = 34/142 (23%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
WY+ + + TL IK+ D G Y CV +N++G L+V
Sbjct: 245 RWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 304
Query: 65 SV----------------SDRRLM-ETRG-----------------NKHTLTIKNVQSTD 90
+ + G ++ L I++V+ D
Sbjct: 305 TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKED 364
Query: 91 FGNYSCVADNNLGRAKKYMELS 112
G Y C N+ A+ EL
Sbjct: 365 KGMYQCFVRNDRESAEASAELK 386
Score = 48.0 bits (114), Expect = 7e-08
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 12/60 (20%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SW +D I S + L I++V+ D G Y C N+ A+ EL +
Sbjct: 340 SWMKDGKAIGHS------------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 41.5 bits (97), Expect = 2e-05
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 9/58 (15%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDF------GNYSCVADNNLGRA 56
W + V R + + G L ++ D+ Y+C+A N G
Sbjct: 37 IWIRSDGTAVGDVPGLRQISSDG---KLVFPPFRAEDYRQEVHAQVYACLARNQFGSI 91
Score = 41.1 bits (96), Expect = 2e-05
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 5/57 (8%)
Query: 5 SWYQD--TFLIEPSVSDRRLMETRGNKHTLTIKNVQSTD-FGNYSCVADNNLGRAKK 58
SW+ D + D + + L I+ V D + +Y C + L +
Sbjct: 139 SWHTDEEENYFPGAEYDGKYLVLPSG--ELHIREVGPEDGYKSYQCRTKHRLTGETR 193
Score = 37.2 bits (86), Expect = 4e-04
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTD-FGNYSCVADNNLGRAKK 107
+ L+ G L I+ V D + +Y C + L +
Sbjct: 155 DGKYLVLPSGE---LHIREVGPEDGYKSYQCRTKHRLTGETR 193
Score = 36.1 bits (83), Expect = 0.001
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 9/51 (17%)
Query: 61 ELSVSVSDRRLMETRGNKHTLTIKNVQSTDF------GNYSCVADNNLGRA 105
V R + + G L ++ D+ Y+C+A N G
Sbjct: 44 TAVGDVPGLRQISSDG---KLVFPPFRAEDYRQEVHAQVYACLARNQFGSI 91
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 69.8 bits (171), Expect = 3e-16
Identities = 27/154 (17%), Positives = 44/154 (28%), Gaps = 49/154 (31%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SW + +R M L I N+ +D G Y C + ++ V
Sbjct: 35 SWLYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV 91
Query: 65 SVS-----------------------------------------DRRLMETR-----GNK 78
V+ + + E G+
Sbjct: 92 IVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN 151
Query: 79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
LT++N+ ++D G Y C A N G +K L
Sbjct: 152 TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 185
Score = 56.7 bits (137), Expect = 3e-11
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SW+++ LIE + ++ +++ G+ LT++N+ ++D G Y C A N G +K L V
Sbjct: 131 SWFRNGKLIEEN--EKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Query: 65 SV 66
V
Sbjct: 187 FV 188
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 71.9 bits (176), Expect = 3e-16
Identities = 26/144 (18%), Positives = 43/144 (29%), Gaps = 40/144 (27%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
WY+ + + TL IK+ D G Y CV +N++G L+V
Sbjct: 281 RWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 340
Query: 65 SVS-------------------------------------DRRLMETRGNKHTLTIKNVQ 87
+ + + + L I++V+
Sbjct: 341 TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES---VLRIESVK 397
Query: 88 STDFGNYSCVADNNLGRAKKYMEL 111
D G Y C N+ A+ EL
Sbjct: 398 KEDKGMYQCFVRNDRESAEASAEL 421
Score = 70.3 bits (172), Expect = 1e-15
Identities = 29/148 (19%), Positives = 46/148 (31%), Gaps = 48/148 (32%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W D I + R LTI+ V+++ GN++C A N G + L+V
Sbjct: 653 DWTLDGQAISEDLGITTSRVGRRG-SVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNV 711
Query: 65 SV-------------------------------------------SDRRLMETRGNKH-- 79
V + + ++ N
Sbjct: 712 YVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVE 771
Query: 80 --TLTIKNVQSTDFGNYSCVADNNLGRA 105
TL + N+Q T+ G Y C A N +G
Sbjct: 772 EGTLHVDNIQKTNEGYYLCEAINGIGSG 799
Score = 63.8 bits (155), Expect = 2e-13
Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 44/147 (29%)
Query: 5 SWYQDTFLIEPS---VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 61
SW D I + + + L I +V + D G Y C+A + +G A+ +
Sbjct: 462 SWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAK 521
Query: 62 LSVSV-------SDRRLME--------------------TRGNK-------------HTL 81
L+V + ++ R N+ TL
Sbjct: 522 LNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTL 581
Query: 82 TIKNVQ-STDFGNYSCVADNNLGRAKK 107
I+NV+ ++D Y+CVA N G + +
Sbjct: 582 IIENVERNSDQATYTCVAKNQEGYSAR 608
Score = 63.0 bits (153), Expect = 5e-13
Identities = 28/153 (18%), Positives = 44/153 (28%), Gaps = 64/153 (41%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SW +D I S + L I++V+ D G Y C N+ A+ EL +
Sbjct: 376 SWMKDGKAIGHS------------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 423
Query: 65 SV-----------------------------------------------SDRRLMETRGN 77
+DR +
Sbjct: 424 GGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVT 483
Query: 78 KH-----TLTIKNVQSTDFGNYSCVADNNLGRA 105
+ L I +V + D G Y C+A + +G A
Sbjct: 484 VNGDVVSYLNITSVHANDGGLYKCIAKSKVGVA 516
Score = 61.9 bits (150), Expect = 1e-12
Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 54/156 (34%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQ-STDFGNYSCVADNNLGR-AKKYMEL 62
W +D + + ++ + G TL I+NV+ ++D Y+CVA N G A+ +E+
Sbjct: 559 VWERDNRALPIN--RKQKVFPNG---TLIIENVERNSDQATYTCVAKNQEGYSARGSLEV 613
Query: 63 SVSV---------------------------------------------SDRRLMETR-- 75
V V D + +R
Sbjct: 614 QVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVG 673
Query: 76 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
LTI+ V+++ GN++C A N G + L
Sbjct: 674 RRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPL 709
Score = 49.5 bits (118), Expect = 2e-08
Identities = 20/169 (11%), Positives = 38/169 (22%), Gaps = 64/169 (37%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDF------GNYSCVADNNLGRAK- 57
W + V R + + G L ++ D+ Y+C+A N G
Sbjct: 72 IWIRSDGTAVGDVPGLRQISSDG---KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIIS 128
Query: 58 KYMELSVSV--------------------------------------------------- 66
+ + + V
Sbjct: 129 RDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAE 188
Query: 67 SDRRLMETRGNKHTLTIKNVQSTD-FGNYSCVADNNLGRAKKYMELSEL 114
D + + L I+ V D + +Y C + L +
Sbjct: 189 YDGKYLVLPSG--ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGR 235
Score = 46.5 bits (110), Expect = 2e-07
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 5 SWYQDTFLIEPSVSDRRLME-TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA-KKYMEL 62
+W + D + + R + TL + N+Q T+ G Y C A N +G + +
Sbjct: 747 TWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMI 806
Query: 63 SV 64
SV
Sbjct: 807 SV 808
Score = 45.7 bits (108), Expect = 5e-07
Identities = 14/129 (10%), Positives = 27/129 (20%), Gaps = 58/129 (44%)
Query: 32 LTIKNVQSTDFGNYSCVADNNLGRA----------------------------------- 56
+ + N + ++ VA G
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 57 --------------KKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDF------GNYSC 96
+ V R + + G L ++ D+ Y+C
Sbjct: 61 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG---KLVFPPFRAEDYRQEVHAQVYAC 117
Query: 97 VADNNLGRA 105
+A N G
Sbjct: 118 LARNQFGSI 126
Score = 44.9 bits (106), Expect = 9e-07
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
TL IK+ D G Y CV +N++G L+
Sbjct: 307 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT 339
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 69.1 bits (169), Expect = 4e-16
Identities = 19/138 (13%), Positives = 38/138 (27%), Gaps = 37/138 (26%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELS 63
W +D +++ + + L++K+V+ +D G Y C ++ + + L+
Sbjct: 35 QWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLT 94
Query: 64 VSV--------SDRRLME----------------------------TRGNKHTLTIKNVQ 87
V D + +
Sbjct: 95 VEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTG 154
Query: 88 STDFGNYSCVADNNLGRA 105
T +SC A N G A
Sbjct: 155 VTQSTMFSCEAHNLKGLA 172
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 71.4 bits (175), Expect = 5e-16
Identities = 27/154 (17%), Positives = 43/154 (27%), Gaps = 48/154 (31%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+WY+ SD+ E L I NV D G Y C+A N +G + + + V
Sbjct: 255 AWYKKG---GDLPSDKAKFENFN--KALRITNVSEEDSGEYFCLASNKMGSIRHTISVRV 309
Query: 65 SVS-------------------------------------DRRLMETRGNKH------TL 81
+ L N + T+
Sbjct: 310 KAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTI 369
Query: 82 TIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
++ Q + Y C N G +S L+
Sbjct: 370 IFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403
Score = 59.5 bits (144), Expect = 7e-12
Identities = 28/165 (16%), Positives = 39/165 (23%), Gaps = 63/165 (38%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTD-FGNYSCVADNNLG---RAKKYM 60
W + R G+ L NV D +YSC A + + K
Sbjct: 150 FWMSSSMEPITQ-DKRVSQGHNGD---LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPF 205
Query: 61 ELSVSV-----------------------------------------------------S 67
L V S
Sbjct: 206 TLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPS 265
Query: 68 DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
D+ E L I NV D G Y C+A N +G + + +
Sbjct: 266 DKAKFENFN--KALRITNVSEEDSGEYFCLASNKMGSIRHTISVR 308
Score = 52.2 bits (125), Expect = 3e-09
Identities = 27/153 (17%), Positives = 35/153 (22%), Gaps = 52/153 (33%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNV----QSTDFGNYSCVADNNLGRAK-KY 59
W +++ + R M R TL I G Y C A N G A
Sbjct: 50 HWTRNSRFFNIAKDPRVSMRRRS--GTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNR 107
Query: 60 MELSVSVSDRRLMETRGNKH---------------------------------------- 79
+ L VS S E
Sbjct: 108 IRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQ 167
Query: 80 ----TLTIKNVQSTD-FGNYSCVADNNLGRAKK 107
L NV D +YSC A + +
Sbjct: 168 GHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQ 200
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 70.6 bits (172), Expect = 9e-16
Identities = 24/143 (16%), Positives = 44/143 (30%), Gaps = 46/143 (32%)
Query: 16 SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVS-------- 67
++ + + + +KN D G+Y C+A + + + + ++V
Sbjct: 611 KLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTIT 670
Query: 68 ---------------------------------DRRLMETRG-----NKHTLTIKNVQST 89
+ L+E G LTI+ V+
Sbjct: 671 GNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKE 730
Query: 90 DFGNYSCVADNNLGRAKKYMELS 112
D G Y+C A + LG AK
Sbjct: 731 DEGLYTCQACSVLGCAKVEAFFI 753
Score = 69.8 bits (170), Expect = 2e-15
Identities = 29/157 (18%), Positives = 48/157 (30%), Gaps = 48/157 (30%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKH------TLTIKNVQSTDFGNYSCVADNNLGRAK 57
+W + + R ++T+ TLTI V +D G Y+C A + L K
Sbjct: 258 FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK 317
Query: 58 KYMELSVSVS---------------------------------------DRRLMETRGN- 77
+ V + +E+
Sbjct: 318 NSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI 377
Query: 78 --KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
H LTI V D GNY+ + N + + K+ +S
Sbjct: 378 KAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVS 414
Score = 64.4 bits (156), Expect = 2e-13
Identities = 22/155 (14%), Positives = 34/155 (21%), Gaps = 49/155 (31%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W + E V + TLTI V D G Y C + Y+ +
Sbjct: 62 LWPNNQSGSEQRV-EVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQD 120
Query: 65 -----------SVSDRRLMETRG------------------------------------- 76
+ E +
Sbjct: 121 YRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWD 180
Query: 77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
+K TI + + G C A N + M +
Sbjct: 181 SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYI 215
Score = 56.3 bits (135), Expect = 9e-11
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W++D + S L + LTI+ V+ D G Y+C A + LG AK +
Sbjct: 699 MWFKDNETLVED-SGIVLKD---GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 754
Query: 65 SVS 67
+
Sbjct: 755 EGA 757
Score = 52.8 bits (126), Expect = 2e-09
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
WY++ +E + + + H LTI V D GNY+ + N + + K+ +S+
Sbjct: 363 KWYKNGIPLESNHTIK-------AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSL 415
Query: 65 SVSDR 69
V
Sbjct: 416 VVYVP 420
Score = 47.4 bits (112), Expect = 1e-07
Identities = 13/119 (10%), Positives = 23/119 (19%), Gaps = 40/119 (33%)
Query: 34 IKNVQSTDFGNYSCVADNNLGRAKKYMELSV----------------------------- 64
+++ + CV + L +
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTTLQITCRGQRDLD 60
Query: 65 -----------SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+ TLTI V D G Y C + Y+ +
Sbjct: 61 WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQ 119
Score = 46.3 bits (109), Expect = 3e-07
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
+ +Q IE + ++ + NK T+ + Y C A N +GR ++ +
Sbjct: 488 VEDFQGGNKIEVN-KNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFH 546
Query: 64 VSV 66
V+
Sbjct: 547 VTR 549
Score = 45.9 bits (108), Expect = 4e-07
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDR 69
+K TI + + G C A N + M + V V R
Sbjct: 181 SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYR 222
Score = 45.5 bits (107), Expect = 5e-07
Identities = 8/62 (12%), Positives = 22/62 (35%)
Query: 51 NNLGRAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 110
K ++ ++ + + + +KN D G+Y C+A + + + +
Sbjct: 597 ELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVV 656
Query: 111 LS 112
Sbjct: 657 RQ 658
Score = 45.5 bits (107), Expect = 5e-07
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 72 METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
E + TLTI V +D G Y+C A + L K + E
Sbjct: 283 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 326
Score = 42.1 bits (98), Expect = 9e-06
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
++ + NK T+ + Y C A N +GR ++ +
Sbjct: 501 KNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFH 546
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 65.8 bits (161), Expect = 1e-15
Identities = 14/60 (23%), Positives = 22/60 (36%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+W I R +E + TL I +VQ D G Y+ N G + + +
Sbjct: 38 TWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 54.6 bits (132), Expect = 3e-11
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 61 ELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
++ R +E + TL I +VQ D G Y+ N G + +
Sbjct: 45 KIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIH 96
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 69.9 bits (171), Expect = 2e-15
Identities = 34/150 (22%), Positives = 50/150 (33%), Gaps = 56/150 (37%)
Query: 15 PSVS----DRRLMETRGNKH----TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV 66
P++ D + + + +H L I N Q D G+Y CVA+N+ G+ +L+
Sbjct: 235 PTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA 294
Query: 67 --------------------------------------------SDRRLMETRGNKHTLT 82
DR +E + TL
Sbjct: 295 QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE----QGTLN 350
Query: 83 IKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
I V +D G Y CVA+N G ELS
Sbjct: 351 ITIVNLSDAGMYQCVAENKHGVIFSSAELS 380
Score = 66.8 bits (163), Expect = 2e-14
Identities = 31/160 (19%), Positives = 52/160 (32%), Gaps = 56/160 (35%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK---YME 61
+W + + + R + + GN L I V+ +D GNY+CV N + K
Sbjct: 136 AWIFNEYPSYQD-NRRFVSQETGN---LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTP 191
Query: 62 LSVSVS---------------------------------------------DRRLMETRG 76
L + D + + +
Sbjct: 192 LILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKA 251
Query: 77 NKH----TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+H L I N Q D G+Y CVA+N+ G+ +L+
Sbjct: 252 RRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLT 291
Score = 55.6 bits (134), Expect = 1e-10
Identities = 30/159 (18%), Positives = 49/159 (30%), Gaps = 56/159 (35%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNV-QSTDFGNYSCVADNNLGRAK-KYMEL 62
W + ++ D R G +L I N ++ D G Y C+A N+ G + +L
Sbjct: 41 RWKLNGTDVDIG-MDFRYSVVDG---SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKL 96
Query: 63 SVSV-----------------------------------------------SDRRLMETR 75
+ + R + +
Sbjct: 97 QFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQET 156
Query: 76 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114
GN L I V+ +D GNY+CV N + K + L
Sbjct: 157 GN---LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPL 192
Score = 53.3 bits (128), Expect = 1e-09
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W ++ + DR +E + TL I V +D G Y CVA+N G ELSV
Sbjct: 328 RWLKNGDPLLTR--DRIQIE----QGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 69.7 bits (170), Expect = 2e-15
Identities = 20/160 (12%), Positives = 37/160 (23%), Gaps = 53/160 (33%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGN---KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 61
W D E N L + ++ T+ G Y+ + N+ A
Sbjct: 347 QWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFN 406
Query: 62 LSVSV---------------------------------------------SDRRLMETRG 76
+ V+ D + + + G
Sbjct: 407 VYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSG 466
Query: 77 NKH-----TLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
+I + G C A N++G+ Y
Sbjct: 467 PPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNF 506
Score = 68.5 bits (167), Expect = 6e-15
Identities = 22/165 (13%), Positives = 40/165 (24%), Gaps = 56/165 (33%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKH---TLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60
+W ++ + N TLTI + + D G + C A+N G A
Sbjct: 244 STWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTT 303
Query: 61 ELSVSVS----------------------------------------DRRLMETRGNKHT 80
L V R + +
Sbjct: 304 TLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYP 363
Query: 81 -------------LTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
L + ++ T+ G Y+ + N+ A +
Sbjct: 364 KSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVY 408
Score = 49.7 bits (118), Expect = 2e-08
Identities = 21/141 (14%), Positives = 35/141 (24%), Gaps = 56/141 (39%)
Query: 28 NKHTLTIKNVQ-STDFGNYSCVADNNLG-RAKKYMELSV--------------------- 64
K + IK+V+ + C D + L V
Sbjct: 166 PKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLRE 225
Query: 65 ----------------------------SVSDRRLMETRGNKH-----TLTIKNVQSTDF 91
+ ++ G+ + TLTI + + D
Sbjct: 226 GEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDS 285
Query: 92 GNYSCVADNNLGRAKKYMELS 112
G + C A+N G A L
Sbjct: 286 GVFMCYANNTFGSANVTTTLE 306
Score = 48.1 bits (114), Expect = 7e-08
Identities = 13/129 (10%), Positives = 30/129 (23%), Gaps = 40/129 (31%)
Query: 19 DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA-----KKYMELSVSVSDRRLME 73
+ ++ + ++T+ G Y+C + L + + +L + E
Sbjct: 69 EILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKE 128
Query: 74 ----------------------------------TRGNKHTLTIKNVQ-STDFGNYSCVA 98
K + IK+V+ + C
Sbjct: 129 DNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSV 188
Query: 99 DNNLGRAKK 107
D
Sbjct: 189 DQEGKSVLS 197
Score = 45.8 bits (108), Expect = 4e-07
Identities = 8/52 (15%), Positives = 19/52 (36%)
Query: 28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGNKH 79
+I + G C A N++G+ Y + +++ + + H
Sbjct: 472 LVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHPHHHHH 523
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 67.3 bits (164), Expect = 2e-15
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 27/133 (20%)
Query: 6 WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVS 65
+ + RR + +GN L IKN++ D Y C ++ + + +
Sbjct: 45 LTKGPSKLNDRADSRRSLWDQGNF-PLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA 103
Query: 66 VSDRRLME--------------------------TRGNKHTLTIKNVQSTDFGNYSCVAD 99
SD L++ TL++ ++ D G ++C
Sbjct: 104 NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVL 163
Query: 100 NNLGRAKKYMELS 112
N + + +++
Sbjct: 164 QNQKKVEFKIDIV 176
Score = 46.5 bits (110), Expect = 2e-07
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
TL++ ++ D G ++C N + + +++ V
Sbjct: 141 GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 177
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 68.7 bits (168), Expect = 3e-15
Identities = 23/158 (14%), Positives = 40/158 (25%), Gaps = 53/158 (33%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W + R ++ + L I+ ++ TD G Y C + ++ V
Sbjct: 133 IWKHKGRDVILKKDVRFIVLSNN---YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189
Query: 65 SVS-----------------------------------------DRRLMETR-------- 75
V+ +
Sbjct: 190 IVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIF 249
Query: 76 -GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+ LTI+NV D Y C+A+N G + L
Sbjct: 250 SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 287
Score = 66.1 bits (161), Expect = 2e-14
Identities = 22/146 (15%), Positives = 42/146 (28%), Gaps = 45/146 (30%)
Query: 5 SWY-QDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG-RAKKYMEL 62
SW+ + + P+ ++ + TLTI N D G Y CV G +++ + +
Sbjct: 36 SWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNV 95
Query: 63 SVSVS-------------------------------------DRRLMETRGNKH------ 79
+ R ++ + +
Sbjct: 96 KIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN 155
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRA 105
L I+ ++ TD G Y C
Sbjct: 156 YLQIRGIKKTDEGTYRCEGRILARGE 181
Score = 58.7 bits (142), Expect = 1e-11
Identities = 19/62 (30%), Positives = 25/62 (40%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SW +D IE D + LTI+NV D Y C+A+N G + L V
Sbjct: 229 SWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
Query: 65 SV 66
Sbjct: 289 FA 290
Score = 43.3 bits (102), Expect = 3e-06
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 6/67 (8%)
Query: 46 SCVADNNLGRAK----KYMELSVSVSDRR--LMETRGNKHTLTIKNVQSTDFGNYSCVAD 99
C + +S + +R ++ + TLTI N D G Y CV
Sbjct: 23 LCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVT 82
Query: 100 NNLGRAK 106
G
Sbjct: 83 AEDGTQS 89
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 68.3 bits (167), Expect = 3e-15
Identities = 27/154 (17%), Positives = 44/154 (28%), Gaps = 49/154 (31%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SW + +R M L I N+ +D G Y C + ++ V
Sbjct: 131 SWLYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV 187
Query: 65 SVS-----------------------------------------DRRLMETR-----GNK 78
V+ + + E G+
Sbjct: 188 IVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN 247
Query: 79 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
LT++N+ ++D G Y C A N G +K L
Sbjct: 248 TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 281
Score = 67.9 bits (166), Expect = 5e-15
Identities = 22/144 (15%), Positives = 40/144 (27%), Gaps = 46/144 (31%)
Query: 6 WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY-MELSV 64
+ I + R +++ G + LTI N D G Y C A + G+ ++ + L +
Sbjct: 38 YNPQGEKIIST--QRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 95
Query: 65 SVS-------------------------------------DRRLMETRGNK------HTL 81
+ + N+ + L
Sbjct: 96 YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL 155
Query: 82 TIKNVQSTDFGNYSCVADNNLGRA 105
I N+ +D G Y C
Sbjct: 156 QILNINKSDEGIYRCEGRVEARGE 179
Score = 57.5 bits (139), Expect = 2e-11
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SW+++ LIE + ++ +++ G+ LT++N+ ++D G Y C A N G +K L V
Sbjct: 227 SWFRNGKLIEEN--EKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Query: 65 SV 66
V
Sbjct: 283 FV 284
Score = 50.6 bits (121), Expect = 7e-09
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
+ + R +++ G + LTI N D G Y C A + G+ +
Sbjct: 45 IISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQ 87
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 66.8 bits (163), Expect = 4e-15
Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 45/153 (29%)
Query: 5 SWY-QDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG-RAKKYMEL 62
SW+ + + P+ ++ + TLTI N D G Y CV G +++ + +
Sbjct: 36 SWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNV 95
Query: 63 SVSVS-------------------------------------DRRLMETRGNK------H 79
+ R ++ + + +
Sbjct: 96 KIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN 155
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
L I+ ++ TD G Y C + ++
Sbjct: 156 YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ 188
Score = 51.4 bits (123), Expect = 2e-09
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W + R ++ + L I+ ++ TD G Y C + ++ V
Sbjct: 133 IWKHKGRDVILKKDVRFIVLSNN---YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189
Query: 65 SV 66
V
Sbjct: 190 IV 191
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 66.4 bits (162), Expect = 4e-15
Identities = 26/158 (16%), Positives = 41/158 (25%), Gaps = 58/158 (36%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W ++ + + + I ++ D G Y CV + + K + V
Sbjct: 38 YWTKNGVELTAT-------RKNASNMEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEV 89
Query: 65 SV-------------------------------------------------SDRRLMETR 75
S R + +
Sbjct: 90 KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINK 149
Query: 76 GNKHTLTIKNVQST-DFGNYSCVADNNLGRAKKYMELS 112
N L I N+Q T D G Y C A N++G A L
Sbjct: 150 ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLR 187
Score = 56.4 bits (136), Expect = 3e-11
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 5 SWYQDTFLIEPSV---SDRRLMETRGNKHTLTIKNVQST-DFGNYSCVADNNLGRAKKYM 60
W + + + S R + + N L I N+Q T D G Y C A N++G A
Sbjct: 125 MWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVST 184
Query: 61 ELSVSV 66
L V V
Sbjct: 185 VLRVRV 190
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 68.0 bits (166), Expect = 8e-15
Identities = 24/127 (18%), Positives = 34/127 (26%), Gaps = 48/127 (37%)
Query: 30 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV----------------------- 66
L I+NV D G Y C A+N GR + +
Sbjct: 257 PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSC 316
Query: 67 ---------------------SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
+R + + L + D G Y CVA+N G
Sbjct: 317 VASGKPRPAVRWLRDGQPLASQNRIEV----SGGELRFSKLVLEDSGMYQCVAENKHGTV 372
Query: 106 KKYMELS 112
EL+
Sbjct: 373 YASAELT 379
Score = 65.7 bits (160), Expect = 4e-14
Identities = 30/158 (18%), Positives = 48/158 (30%), Gaps = 52/158 (32%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK-----Y 59
W + F RR + L I +++D GNYSC A +++ K +
Sbjct: 135 RWLLNEFPNFIPADGRRFVSQTTG--NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKF 192
Query: 60 MELSVSVSDRRL---------------------------------------------MET 74
+LS++ D R +
Sbjct: 193 SQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW 252
Query: 75 RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
++ L I+NV D G Y C A+N GR +
Sbjct: 253 LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRII 290
Score = 55.6 bits (134), Expect = 1e-10
Identities = 23/160 (14%), Positives = 41/160 (25%), Gaps = 54/160 (33%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA-------- 56
W + ++ R + + V++ D G+Y CVA N G
Sbjct: 40 RWKMNGTELKMGPDSRYRLV---AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR 96
Query: 57 -----------------------------------------KKYMELSVSVSDRRLMETR 75
+ RR +
Sbjct: 97 FGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQT 156
Query: 76 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
L I +++D GNYSC A +++ K + +
Sbjct: 157 TG--NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQ 194
Score = 52.9 bits (127), Expect = 2e-09
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W +D + +R + + L + D G Y CVA+N G EL+V
Sbjct: 327 RWLRDGQPLASQ--NRIEV----SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 66.1 bits (161), Expect = 1e-14
Identities = 22/152 (14%), Positives = 36/152 (23%), Gaps = 62/152 (40%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELS 63
W++ ++ + GN L V D G Y C +NN ++ +L
Sbjct: 51 QWFKM---------NKEI--PNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLD 99
Query: 64 VSV-----------------------SDRRLME--------------------------- 73
V + ++LM
Sbjct: 100 VCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL 159
Query: 74 TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
T K + V G Y C N+
Sbjct: 160 THETKKLYMVPYVDLEHQGTYWCHVYNDRDSQ 191
Score = 49.5 bits (118), Expect = 1e-08
Identities = 10/78 (12%), Positives = 20/78 (25%), Gaps = 12/78 (15%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W+++ + K + V G Y C N+ +
Sbjct: 151 QWFKNELPLTHE-----------TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE-I 198
Query: 65 SVSDRRLMETRGNKHTLT 82
+ + + NK T
Sbjct: 199 IIDELNNLGHPDNKEQTT 216
Score = 46.0 bits (109), Expect = 3e-07
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
GN L V D G Y C +NN
Sbjct: 62 GNTSELIFNAVHVKDAGFYVCRVNNNFTFEF 92
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 66.9 bits (163), Expect = 2e-14
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 2/80 (2%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+W + I S DR G + L I D G Y + +K ++LS
Sbjct: 141 NWSHNGSAIRYS--DRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 198
Query: 65 SVSDRRLMETRGNKHTLTIK 84
D E + K +
Sbjct: 199 QAYDEAYAEFQRLKQAAIAE 218
Score = 61.9 bits (150), Expect = 9e-13
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SW ++ + L G TI V + D G Y V N G +SV
Sbjct: 255 SWLKNEKALASD-DHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313
Query: 65 SV 66
+
Sbjct: 314 FI 315
Score = 58.0 bits (140), Expect = 2e-11
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
WY+D I ++ + + TL I D G Y + ++ G+ K ++L
Sbjct: 40 VWYKDEREISVD--EK--HDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 95
Query: 65 SVSDRRLMETR 75
+ME
Sbjct: 96 EAFKELMMEVC 106
Score = 56.1 bits (135), Expect = 9e-11
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+ SDR G + L I D G Y + +K ++LS
Sbjct: 149 IRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLS 197
Score = 51.5 bits (123), Expect = 4e-09
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 64 VSVSDRRLM-ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
++ D + G TI V + D G Y V N G +S
Sbjct: 263 LASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 312
Score = 47.6 bits (113), Expect = 1e-07
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+SV ++ + + TL I D G Y + ++ G+ K ++L
Sbjct: 48 ISVDEK--HDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 94
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 66.7 bits (162), Expect = 2e-14
Identities = 21/134 (15%), Positives = 45/134 (33%), Gaps = 29/134 (21%)
Query: 6 WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELSV 64
+ + RR + +GN L IKN++ D Y C ++ + L+
Sbjct: 44 LTKGPSKLNDRADSRRSLWDQGNF-PLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA 102
Query: 65 SVSDRRLME--------------------------TRGNKHTLTIKNVQSTDFGNYSCVA 98
+ SD L++ TL++ ++ D G ++C
Sbjct: 103 N-SDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTV 161
Query: 99 DNNLGRAKKYMELS 112
N + + +++
Sbjct: 162 LQNQKKVEFKIDIV 175
Score = 60.2 bits (145), Expect = 3e-12
Identities = 16/121 (13%), Positives = 33/121 (27%), Gaps = 24/121 (19%)
Query: 5 SWYQDTFLIEPSVSDRRLM--ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 62
++ D +L + TL Q GN + + G+ + + L
Sbjct: 230 DLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNL 289
Query: 63 SV-SVSDRRLMET----------------RGNKH-----TLTIKNVQSTDFGNYSCVADN 100
V + + T NK V + + G + C+ +
Sbjct: 290 VVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPEAGMWQCLLSD 349
Query: 101 N 101
+
Sbjct: 350 S 350
Score = 46.7 bits (110), Expect = 2e-07
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
TL++ ++ D G ++C N + + +++ V
Sbjct: 140 GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 176
Score = 44.8 bits (105), Expect = 9e-07
Identities = 12/98 (12%), Positives = 28/98 (28%), Gaps = 16/98 (16%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGNKH----------- 79
L + T G A+ + ++ + ++ + R +
Sbjct: 199 PLAFTVEKLTGSGELWWQAE---RASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPL 255
Query: 80 --TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
TL Q GN + + G+ + + L +
Sbjct: 256 HLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR 293
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 65.9 bits (160), Expect = 3e-14
Identities = 22/150 (14%), Positives = 34/150 (22%), Gaps = 53/150 (35%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+WY+D S + L + D G+Y CV N+ + +
Sbjct: 39 TWYKDDSKTPVSTEQASRIHQHK--EKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKF 96
Query: 65 SVSDRRLMETR------------------------------------------------- 75
++ L
Sbjct: 97 VENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH 156
Query: 76 --GNKHTLTIKNVQSTDFGNYSCVADNNLG 103
G K L + NV GNY+C A
Sbjct: 157 FSGVKDRLIVMNVAEKHRGNYTCHASYTYL 186
Score = 49.0 bits (116), Expect = 3e-08
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 5/65 (7%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
+ WY+D + + + L + NV GNY+C A + +
Sbjct: 141 LQWYKDCKPLLLD--NIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRV 195
Query: 64 VSVSD 68
+
Sbjct: 196 IEFIT 200
Score = 45.9 bits (108), Expect = 3e-07
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 11/74 (14%)
Query: 5 SWYQDTFLIEPS----VSDRRLMETRGNKH------TLTIKNVQSTDF-GNYSCVADNNL 53
W + +I+ D +E NK L I ++S + ++C A N
Sbjct: 242 YWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTH 301
Query: 54 GRAKKYMELSVSVS 67
G Y++L V+
Sbjct: 302 GIDAAYIQLIYPVT 315
Score = 44.3 bits (104), Expect = 1e-06
Identities = 10/49 (20%), Positives = 17/49 (34%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
VS + +K L + D G+Y CV N+ + +
Sbjct: 47 TPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAK 95
Score = 41.2 bits (96), Expect = 2e-05
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 73 ETRGNKHTLTIKNVQSTDF-GNYSCVADNNLGRAKKYMEL 111
L I ++S + ++C A N G Y++L
Sbjct: 271 RRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 65.7 bits (160), Expect = 5e-14
Identities = 22/142 (15%), Positives = 36/142 (25%), Gaps = 39/142 (27%)
Query: 6 WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELSV 64
W+ + + S + R TLT+ NV D Y C N++ + + L V
Sbjct: 500 WWVNGQSLPVSPRLQLSNGNR----TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDV 555
Query: 65 SV---------SDRRLME--------------------TRGNK-----HTLTIKNVQSTD 90
D + L I + +
Sbjct: 556 LYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQVLFIAKITPNN 615
Query: 91 FGNYSCVADNNLGRAKKYMELS 112
G Y+C N + S
Sbjct: 616 NGTYACFVSNLATGRNNSIVKS 637
Score = 65.0 bits (158), Expect = 8e-14
Identities = 25/138 (18%), Positives = 43/138 (31%), Gaps = 39/138 (28%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELS 63
W+ + + RL + GN+ TLT+ NV D +Y C N + + + L+
Sbjct: 143 LWWVNN---QSLPVSPRLQLSNGNR-TLTLFNVTRNDTASYKCETQNPVSARRSDSVILN 198
Query: 64 VSVSDRRLMETRGNK----------------------------------HTLTIKNVQST 89
V + N L I N+
Sbjct: 199 VLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVN 258
Query: 90 DFGNYSCVADNNLGRAKK 107
+ G+Y+C A N+ +
Sbjct: 259 NSGSYTCQAHNSDTGLNR 276
Score = 62.3 bits (151), Expect = 8e-13
Identities = 22/147 (14%), Positives = 42/147 (28%), Gaps = 58/147 (39%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SW+ + + + L I N+ + G+Y+C A N+ + ++
Sbjct: 236 SWFVNGTFQQST-------------QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTI 282
Query: 65 SVS----------------------------------------DRRL-----METRGNKH 79
+V ++ L ++ +
Sbjct: 283 TVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNR 342
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAK 106
TLT+ +V D G Y C N L
Sbjct: 343 TLTLLSVTRNDVGPYECGIQNELSVDH 369
Score = 61.1 bits (148), Expect = 2e-12
Identities = 23/123 (18%), Positives = 37/123 (30%), Gaps = 47/123 (38%)
Query: 30 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVS---------------------- 67
L I N+ + G Y+C A+N+ + +++VS
Sbjct: 426 QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAV 485
Query: 68 ------------------------DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG 103
RL + GN TLT+ NV D Y C N++
Sbjct: 486 AFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGN-RTLTLFNVTRNDARAYVCGIQNSVS 544
Query: 104 RAK 106
+
Sbjct: 545 ANR 547
Score = 60.0 bits (145), Expect = 5e-12
Identities = 23/143 (16%), Positives = 40/143 (27%), Gaps = 39/143 (27%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELS 63
W+ + + S ++ + TLT+ +V D G Y C N L + L+
Sbjct: 321 LWWVNNQSLPVS----PRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILN 376
Query: 64 VSV---------SDRRLME--------------------TRGNK-----HTLTIKNVQST 89
V S L I N+
Sbjct: 377 VLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEK 436
Query: 90 DFGNYSCVADNNLGRAKKYMELS 112
+ G Y+C A+N+ + +
Sbjct: 437 NSGLYTCQANNSASGHSRTTVKT 459
Score = 55.3 bits (133), Expect = 2e-10
Identities = 22/138 (15%), Positives = 38/138 (27%), Gaps = 51/138 (36%)
Query: 15 PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL------------ 62
P+ S R ++ +L I+N+ D G Y+ + ++
Sbjct: 59 PAYSGREIIYPNA---SLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSI 115
Query: 63 ----------------------------------SVSVSDRRLMETRGNKHTLTIKNVQS 88
S+ VS R + TLT+ NV
Sbjct: 116 SSNNSKPVEDKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGN--RTLTLFNVTR 173
Query: 89 TDFGNYSCVADNNLGRAK 106
D +Y C N + +
Sbjct: 174 NDTASYKCETQNPVSARR 191
Score = 50.7 bits (121), Expect = 9e-09
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVS 67
L I + + G Y+C N + S++VS
Sbjct: 605 VLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITVS 641
Score = 39.6 bits (92), Expect = 8e-05
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 107
S R ++ +L I+N+ D G Y+ + ++
Sbjct: 62 SGREIIYPNA---SLLIQNIIQNDTGFYTLHVIKSDLVNEE 99
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 64.9 bits (158), Expect = 5e-14
Identities = 19/154 (12%), Positives = 32/154 (20%), Gaps = 53/154 (34%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
+ +Y++ + + LTI + G Y C + ++
Sbjct: 115 VLYYRNGKAFKFFHWNS----------NLTILKTNISHNGTYHCSGMGKHRYTSAGISVT 164
Query: 64 VSV-------------------------------------------SDRRLMETRGNKHT 80
V + + R
Sbjct: 165 VKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSE 224
Query: 81 LTIKNVQSTDFGNYSCVADNNLGRAKKYMELSEL 114
I + D G Y C A G K EL
Sbjct: 225 YQILTARREDSGLYWCEAATEDGNVLKRSPELEL 258
Score = 51.8 bits (124), Expect = 3e-09
Identities = 17/133 (12%), Positives = 29/133 (21%), Gaps = 46/133 (34%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME--- 61
W+ + + S + I + D G Y C + +E
Sbjct: 35 QWFLNGTATQTSTP------------SYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHR 82
Query: 62 --LSVSVS-----------------------------DRRLMETRGNKHTLTIKNVQSTD 90
L + VS + + + LTI +
Sbjct: 83 GWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISH 142
Query: 91 FGNYSCVADNNLG 103
G Y C
Sbjct: 143 NGTYHCSGMGKHR 155
Score = 46.8 bits (111), Expect = 1e-07
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 19 DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY-MELSVSV 66
+ + R I + D G Y C A G K EL + V
Sbjct: 212 GSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQV 260
Score = 32.2 bits (73), Expect = 0.019
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113
+ I + D G Y C + +E+
Sbjct: 49 SYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHR 82
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 65.5 bits (159), Expect = 6e-14
Identities = 15/150 (10%), Positives = 36/150 (24%), Gaps = 43/150 (28%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKH----TLTIKNVQSTDFGNYSCVADNNLGRA---- 56
+W + +E + + +V D G Y+C + + ++
Sbjct: 261 TWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVT 320
Query: 57 ----------KKYMELSVSVSDRRLMETRG-------------------------NKHTL 81
+ + + R N +++
Sbjct: 321 IVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSI 380
Query: 82 TIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
+ G Y A+N+ + K L
Sbjct: 381 SKFCNHKHQPGEYIFHAENDDAQFTKMFTL 410
Score = 55.1 bits (132), Expect = 2e-10
Identities = 14/140 (10%), Positives = 26/140 (18%), Gaps = 42/140 (30%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W ++ I + T G Y + +S+
Sbjct: 81 LWVFKH---SSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSI 137
Query: 65 SVS------------------------------------DRRLMETRGNKHTLTIKN--- 85
+ D + + + K
Sbjct: 138 RNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKV 197
Query: 86 VQSTDFGNYSCVADNNLGRA 105
+ + C A N LGR
Sbjct: 198 LHELFGTDIRCCARNELGRE 217
Score = 52.0 bits (124), Expect = 3e-09
Identities = 8/60 (13%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+W + +++ ++ N ++++ G Y A+N+ + K L++
Sbjct: 359 TWTFSR---KSFPCEQKGLD---NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
Score = 46.6 bits (110), Expect = 3e-07
Identities = 17/151 (11%), Positives = 33/151 (21%), Gaps = 56/151 (37%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL-- 62
W E + + + + + TD C A N LGR +
Sbjct: 172 EWVLCDSQGESCKEESPAVVKKE---EKVLHELFGTD---IRCCARNELGRECTRLFTID 225
Query: 63 ------------------------------------------SVSVSDRRLMETRGNKH- 79
++ + M T
Sbjct: 226 LNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT 285
Query: 80 -----TLTIKNVQSTDFGNYSCVADNNLGRA 105
+ +V D G Y+C + + ++
Sbjct: 286 MIRILFAFVSSVARNDTGYYTCSSSKHPSQS 316
Score = 45.4 bits (107), Expect = 6e-07
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 63 SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
S++ ++ RG ++ I + T G Y + +S
Sbjct: 88 SLNCQPHFDLQNRGV-VSMVILKMTETQAGEYLLFIQSEATNYTILFTVS 136
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 61.6 bits (150), Expect = 6e-14
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 57
W + S R +G K+ L ++ +D G +A
Sbjct: 42 MWTVGGKTVGSS--SRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLTSKAS 92
Score = 55.1 bits (133), Expect = 2e-11
Identities = 9/43 (20%), Positives = 15/43 (34%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
V S R +G K+ L ++ +D G +A
Sbjct: 50 VGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLTSKAS 92
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 65.1 bits (158), Expect = 7e-14
Identities = 22/152 (14%), Positives = 36/152 (23%), Gaps = 52/152 (34%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+W+++ + M + L + D G Y C N K +EL V
Sbjct: 58 TWHKNDSARTVPGEEETRMWAQD--GALWLLPALQEDSGTYVCTTRNASYCDKMSIELRV 115
Query: 65 SVS-------------------------------------------DRRLMETRGNKH-- 79
+ D L++ K
Sbjct: 116 FENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLS 175
Query: 80 -----TLTIKNVQSTDFGNYSCVADNNLGRAK 106
L + +V D G Y CV +
Sbjct: 176 VRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQ 207
Score = 53.2 bits (127), Expect = 1e-09
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
WY+D+ L++ + + + RG L + +V D G Y CV + + S+
Sbjct: 158 QWYKDSLLLDKD--NEKFLSVRGT-THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSI 214
Query: 65 SVS 67
+
Sbjct: 215 ELR 217
Score = 43.9 bits (103), Expect = 2e-06
Identities = 10/50 (20%), Positives = 14/50 (28%)
Query: 63 SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+ +V L + D G Y C N K +EL
Sbjct: 65 ARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELR 114
Score = 43.5 bits (102), Expect = 2e-06
Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 11/68 (16%)
Query: 6 WYQDTFLIEPSVSDRRLMETRGNK----------HTLTIKNVQSTDFG-NYSCVADNNLG 54
W + IE + R+ E + L V D ++ CV N L
Sbjct: 264 WTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLS 323
Query: 55 RAKKYMEL 62
+
Sbjct: 324 FQTLRTTV 331
Score = 42.0 bits (98), Expect = 9e-06
Identities = 12/68 (17%), Positives = 18/68 (26%), Gaps = 4/68 (5%)
Query: 50 DNNLGRAKKYMELSVSVSDRRLMETRGNK---HTLTIKNVQSTDFG-NYSCVADNNLGRA 105
N+ Y V+ R+ L V D ++ CV N L
Sbjct: 266 ANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQ 325
Query: 106 KKYMELSE 113
+ E
Sbjct: 326 TLRTTVKE 333
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 61.2 bits (149), Expect = 8e-14
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W + + S +R G +H L + TD G Y C A N G A ++V
Sbjct: 46 VWEKGGQQLAAS--ERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTV 103
Query: 65 SV 66
Sbjct: 104 LE 105
Score = 53.9 bits (130), Expect = 7e-11
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
++ S+R G +H L + TD G Y C A N G A
Sbjct: 54 LAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEA 95
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 63.4 bits (154), Expect = 9e-14
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+W + I S DR G + L I D G Y + +K ++LS
Sbjct: 36 NWSHNGSAIRYS--DRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 93
Query: 65 SVSDRRLMETRGNK 78
D E + K
Sbjct: 94 QAYDEAYAEFQRLK 107
Score = 58.3 bits (141), Expect = 8e-12
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SW ++ + + L G TI V + D G Y V N G +SV
Sbjct: 150 SWLKNEKALAQT-DHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208
Query: 65 SVSD 68
+ +
Sbjct: 209 FIPE 212
Score = 52.6 bits (126), Expect = 1e-09
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+ SDR G + L I D G Y + +K ++LS
Sbjct: 44 IRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLS 92
Score = 48.7 bits (116), Expect = 3e-08
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 64 VSVSDR-RLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
++ +D L G TI V + D G Y V N G +S
Sbjct: 158 LAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 60.8 bits (148), Expect = 1e-13
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W + I S ++ + T G +HTLT++ V D G+Y+ +A G +K +L V
Sbjct: 40 RWQRGGSDISAS--NKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKV 93
Score = 52.3 bits (126), Expect = 2e-10
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
S++ + T G +HTLT++ V D G+Y+ +A ++ +
Sbjct: 51 SNKYGLATEGTRHTLTVREVGPADQGSYAVIAGSSKVKFD 90
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 63.1 bits (153), Expect = 1e-13
Identities = 23/168 (13%), Positives = 40/168 (23%), Gaps = 60/168 (35%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKH------TLTIKNVQSTDFGNYSCVADNNLGRA-- 56
W D V + +T K+V D G Y+C+ G +
Sbjct: 37 EWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYG 96
Query: 57 KKYMELSVSV---------------------------------------------SDRRL 71
+ ++L V V + +
Sbjct: 97 EVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKST 156
Query: 72 METRGNKH-------TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+ + L + ++D G YSC A N G +
Sbjct: 157 RAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 204
Score = 58.4 bits (141), Expect = 6e-12
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRG-----NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY 59
+W++D ++ + R L + ++D G YSC A N G
Sbjct: 141 TWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTS 200
Query: 60 MELSVSVSD 68
+ + +
Sbjct: 201 NAVRMEAVE 209
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 64.2 bits (156), Expect = 1e-13
Identities = 20/160 (12%), Positives = 33/160 (20%), Gaps = 56/160 (35%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN-LGRAKKYMELS 63
S ++ + + I+ + D Y C N + L
Sbjct: 123 SLMREG--GRQVLRKTVYFFS--PWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLK 178
Query: 64 VSV---------------------------------------------------SDRRLM 72
V+ +
Sbjct: 179 VNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQD 238
Query: 73 ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
L++ V D G YSCVA N++G M
Sbjct: 239 NYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQ 278
Score = 60.3 bits (146), Expect = 3e-12
Identities = 18/144 (12%), Positives = 30/144 (20%), Gaps = 51/144 (35%)
Query: 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 61
G + W +S ++ TLT +N + G Y C + +
Sbjct: 30 GSVEWDGP-------ISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIH 82
Query: 62 LSVSV---------------------------------------SDRRLMETRG-----N 77
L V R + +
Sbjct: 83 LYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSP 142
Query: 78 KHTLTIKNVQSTDFGNYSCVADNN 101
I+ + D Y C N
Sbjct: 143 WRGFIIRKAKVLDSNTYVCKTMVN 166
Score = 58.0 bits (140), Expect = 2e-11
Identities = 15/62 (24%), Positives = 23/62 (37%)
Query: 6 WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVS 65
+ +E ++ L++ V D G YSCVA N++G M V
Sbjct: 221 LKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV 280
Query: 66 VS 67
S
Sbjct: 281 ES 282
Score = 43.0 bits (101), Expect = 3e-06
Identities = 8/41 (19%), Positives = 13/41 (31%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 107
S ++ TLT +N + G Y C +
Sbjct: 39 SPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGST 79
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 60.9 bits (148), Expect = 1e-13
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 6 WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 56
WY++ + PS R + G H L I +V+ D G+Y+ V D
Sbjct: 41 WYKNGVEVRPS--KRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSL 89
Score = 53.5 bits (129), Expect = 9e-11
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
S R + G H L I +V+ D G+Y+ V D
Sbjct: 51 SKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSL 89
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 64.3 bits (156), Expect = 2e-13
Identities = 19/151 (12%), Positives = 41/151 (27%), Gaps = 43/151 (28%)
Query: 4 MSWYQDTFLIEPS----VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA--- 56
++W + +E +S T + +V D G Y+C + + ++
Sbjct: 260 LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALV 319
Query: 57 -------------KKYME--------LSVSVS------------DRRLMETR---GNKHT 80
+ E SV + + N ++
Sbjct: 320 TIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYS 379
Query: 81 LTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
++ G Y A+N+ + K L
Sbjct: 380 ISKFCNHKHQPGEYIFHAENDDAQFTKMFTL 410
Score = 58.9 bits (142), Expect = 1e-11
Identities = 16/141 (11%), Positives = 25/141 (17%), Gaps = 42/141 (29%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W ++ I + T G Y + +S+
Sbjct: 81 LWVFKH---SSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSI 137
Query: 65 S-----VSDRRLMETRGNKHTLT----------------------------------IKN 85
R N+ L K
Sbjct: 138 RNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKV 197
Query: 86 VQSTDFGNYSCVADNNLGRAK 106
+ + C A N LGR
Sbjct: 198 LHELFGTDIRCCARNELGREC 218
Score = 56.6 bits (136), Expect = 8e-11
Identities = 17/155 (10%), Positives = 43/155 (27%), Gaps = 53/155 (34%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+W + +++ ++ N ++++ G Y A+N+ + K L++
Sbjct: 359 TWTFSR---KSFPCEQKGLD---NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412
Query: 65 SV------------------------------------SDRRLMETRGNKHT-------- 80
+ E N+
Sbjct: 413 RRKPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQW 472
Query: 81 ---LTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
T+ ++ C A N+LG + + + L+
Sbjct: 473 VSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLN 507
Score = 48.9 bits (116), Expect = 3e-08
Identities = 17/151 (11%), Positives = 31/151 (20%), Gaps = 56/151 (37%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK------ 58
W E + + + K + + C A N LGR
Sbjct: 172 EWVLCDSQGESCKEESPAVVKKE------EKVLHELFGTDIRCCARNELGRECTRLFTID 225
Query: 59 -YMELSVSVSDRRLME---------------------TRGNK------------------ 78
++ L NK
Sbjct: 226 LNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT 285
Query: 79 ----HTLTIKNVQSTDFGNYSCVADNNLGRA 105
+ +V D G Y+C + + ++
Sbjct: 286 MIRILFAFVSSVARNDTGYYTCSSSKHPSQS 316
Score = 43.1 bits (101), Expect = 4e-06
Identities = 4/45 (8%), Positives = 9/45 (20%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
++ I + T G Y + +
Sbjct: 91 CQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTV 135
Score = 38.1 bits (88), Expect = 2e-04
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 32 LTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVS 67
T+ ++ C A N+LG + + + L+
Sbjct: 476 STLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGP 511
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 60.5 bits (147), Expect = 2e-13
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SW D + P S +++ H+L I+ V S D G Y+C+A N G+ +EL V
Sbjct: 42 SWQLDGKPVRPD-SAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVV 100
Query: 65 SVSDRR 70
+ +
Sbjct: 101 AAKESG 106
Score = 48.5 bits (116), Expect = 8e-09
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
S +++ H+L I+ V S D G Y+C+A N G+ +EL
Sbjct: 54 SAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLEL 98
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 60.4 bits (147), Expect = 2e-13
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+W + ++ S R + T K T I +VQ++D GNYS V +N+ G+ + L++
Sbjct: 47 TWLRKGQVLSTS--ARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 52.7 bits (127), Expect = 1e-10
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
+S S R + T K T I +VQ++D GNYS V +N+ G+
Sbjct: 55 LSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQ 96
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 62.8 bits (152), Expect = 2e-13
Identities = 23/127 (18%), Positives = 37/127 (29%), Gaps = 47/127 (37%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV-------------------------- 64
++ + N+Q +D G Y C G A K L+V
Sbjct: 85 SINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCE 144
Query: 65 -------------------SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
++ L E +++KN S G YSC N +G
Sbjct: 145 PKEGSLPLQFEWQKLSDSQTMPTPWLAEMTS--PVISVKNASSEYSGTYSCTVQNRVGSD 202
Query: 106 KKYMELS 112
+ + L
Sbjct: 203 QCMLRLD 209
Score = 50.8 bits (121), Expect = 5e-09
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W + + M + +++KN S G YSC N +G + + L V
Sbjct: 155 EWQKLSDSQTMPTPWLAEMTS----PVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 62.5 bits (152), Expect = 2e-13
Identities = 30/154 (19%), Positives = 49/154 (31%), Gaps = 56/154 (36%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQST-DFGNYSCVADNNLGRAK-KYMEL 62
W ++ + + S ++E G L I+ V++ D Y CVA+N +G A L
Sbjct: 39 VWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATL 98
Query: 63 SVSV---------------------------------------------------SDRRL 71
++ S+ R
Sbjct: 99 TIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY 158
Query: 72 METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
G L I+N + D G Y CVA+N++G
Sbjct: 159 SLKDG---FLQIENSREEDQGKYECVAENSMGTE 189
Score = 50.9 bits (122), Expect = 4e-09
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELS 63
W ++ ++ S + R G L I+N + D G Y CVA+N++G K L
Sbjct: 143 YWIKNQTKVDMS--NPRYSLKDG---FLQIENSREEDQGKYECVAENSMGTEHSKATNLY 197
Query: 64 VSV 66
V V
Sbjct: 198 VKV 200
Score = 39.4 bits (92), Expect = 6e-05
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 60 MELSVSVSDRRLMETRGNKHTLTIKNVQST-DFGNYSCVADNNLGRAK 106
++S + S ++E G L I+ V++ D Y CVA+N +G A
Sbjct: 45 KKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAV 92
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 60.4 bits (147), Expect = 2e-13
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+W + I+ S + +E N LTI + G Y+ + +N LG + + L+V
Sbjct: 40 TWMKFRKQIQES--EHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTV 97
Score = 52.7 bits (127), Expect = 2e-10
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
+ S+ +E N LTI + G Y+ + +N LG + + L
Sbjct: 48 IQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL 95
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 62.1 bits (151), Expect = 3e-13
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SW++D L+ S + + L + DFGNY+C A N +G+ L
Sbjct: 51 SWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQ 110
Score = 54.1 bits (130), Expect = 3e-10
Identities = 13/56 (23%), Positives = 21/56 (37%)
Query: 60 MELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
L S + + L + DFGNY+C A N +G+ L + +
Sbjct: 57 QLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQAD 112
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor,
receptor tyrosine kinase, 3D-domain swapping,
transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 60.2 bits (146), Expect = 3e-13
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 6/64 (9%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKH----TLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60
W + + S +E L + GNY+ +A N LG A + +
Sbjct: 38 HWLHNGQPLRES--KIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTI 95
Query: 61 ELSV 64
Sbjct: 96 NGHF 99
Score = 52.1 bits (125), Expect = 4e-10
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 67 SDRRLMETRGNKH----TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
S +E L + GNY+ +A N LG A + +
Sbjct: 49 SKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 98
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 61.6 bits (149), Expect = 3e-13
Identities = 19/142 (13%), Positives = 30/142 (21%), Gaps = 49/142 (34%)
Query: 19 DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG------------------------ 54
L E K +G YSCV
Sbjct: 38 GVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINE 97
Query: 55 ------------------------RAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQ-ST 89
+ L R + + + L I+N+
Sbjct: 98 GETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEA 157
Query: 90 DFGNYSCVADNNLGRAKKYMEL 111
D G Y C ++ G + + L
Sbjct: 158 DPGQYRCNGTSSKGSDQAIITL 179
Score = 53.9 bits (129), Expect = 2e-10
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 5 SWYQDT----FLIEPSVSDRRLMETRGNKHTLTIKNVQ-STDFGNYSCVADNNLGRAKKY 59
+WY+ T + R + + + L I+N+ D G Y C ++ G +
Sbjct: 117 AWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAI 176
Query: 60 MELSV 64
+ L V
Sbjct: 177 ITLRV 181
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 61.6 bits (149), Expect = 4e-13
Identities = 19/151 (12%), Positives = 30/151 (19%), Gaps = 48/151 (31%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+ D IE + N L + + GNY C K LSV
Sbjct: 42 RMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV 101
Query: 65 SV------------------------------------------------SDRRLMETRG 76
+ + E G
Sbjct: 102 VKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG 161
Query: 77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 107
+ ++ +CV N+ A
Sbjct: 162 SLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 192
Score = 43.9 bits (103), Expect = 1e-06
Identities = 9/41 (21%), Positives = 12/41 (29%)
Query: 72 METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+ N L + + GNY C K LS
Sbjct: 60 IHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLS 100
Score = 41.6 bits (97), Expect = 9e-06
Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 5 SW-YQDTFLIEPSVSDRRLMETR-GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 62
W + P+ ++ +M+ + G+ ++ +CV N+ A + +
Sbjct: 137 QWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG-VYV 195
Query: 63 SVSVS 67
S +S
Sbjct: 196 SGYLS 200
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 59.3 bits (144), Expect = 4e-13
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+W + L++ + + ++ + + D GNY N LG + E+ V
Sbjct: 35 TWTVGDSGAALA--PELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 51.9 bits (125), Expect = 2e-10
Identities = 9/48 (18%), Positives = 22/48 (45%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
+++ L++ + + ++ + + D GNY N LG + E+
Sbjct: 43 AALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 61.5 bits (149), Expect = 4e-13
Identities = 18/147 (12%), Positives = 37/147 (25%), Gaps = 46/147 (31%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKH-------TLTIKNVQSTDFGNYSCVADNNLGRAK 57
W +D ++E + S + + ++ L I ++Q +D G Y C+
Sbjct: 36 HWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFV 95
Query: 58 KYM-ELSVSVS--------------------------------------DRRLMETRGNK 78
+ + L G+
Sbjct: 96 SQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHG 155
Query: 79 HTLTIKNVQSTDFGNYSCVADNNLGRA 105
++ ++SC A N G
Sbjct: 156 PQRSLHVPGLNKTSSFSCEAHNAKGVT 182
Score = 41.8 bits (98), Expect = 7e-06
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAK 106
L I ++Q +D G Y C+
Sbjct: 69 QLRITSLQLSDTGQYQCLVFLGHQTFV 95
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 59.7 bits (145), Expect = 4e-13
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W ++ +++ + L + + TL IK+V D G Y+ A N G L V
Sbjct: 48 FWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDV 107
Query: 65 SV 66
+
Sbjct: 108 TA 109
Score = 50.1 bits (120), Expect = 2e-09
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 60 MELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
+ + L + + TL IK+V D G Y+ A N G
Sbjct: 54 EMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVT 99
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 58.4 bits (142), Expect = 8e-13
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
WY++ IE S N L I++V D + A N G + L V
Sbjct: 38 EWYKNGVKIERS-DRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96
Score = 47.3 bits (113), Expect = 2e-08
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 60 MELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
+++ S N L I++V D + A N G
Sbjct: 44 VKIERS-DRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGET 88
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 62.1 bits (150), Expect = 9e-13
Identities = 25/156 (16%), Positives = 46/156 (29%), Gaps = 52/156 (33%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNV-QSTDFGNYSCVADNNLGRAKKYMEL 62
W +V + + LT+ NV + N +C A+N++GRA+ +++
Sbjct: 190 AGWILTELEQSATVMKSGGLPSL----GLTLANVTSDLNRKNVTCWAENDVGRAEVSVQV 245
Query: 63 SVSVSDRRLMETRGNKH------------------------------------------- 79
+VS + T H
Sbjct: 246 NVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET 305
Query: 80 ----TLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
L + + GNY+ +A N G+A +
Sbjct: 306 VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA 341
Score = 48.6 bits (115), Expect = 4e-08
Identities = 9/66 (13%), Positives = 21/66 (31%), Gaps = 5/66 (7%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKH-----TLTIKNVQSTDFGNYSCVADNNLGRAKK 58
+ W + ++ + L + + GNY+ +A N G+A
Sbjct: 278 LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA 337
Query: 59 YMELSV 64
+ +
Sbjct: 338 SIMAAF 343
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 58.2 bits (141), Expect = 1e-12
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
WY++ I PS + + E +G + L I N Q TD Y A + EL V
Sbjct: 40 KWYKNGQEIRPS--TKYIFEHKGCQRILFINNCQMTDDSEYYVTAGDEKCST----ELFV 93
Score = 50.1 bits (120), Expect = 2e-09
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
S + + E +G + L I N Q TD Y A + +
Sbjct: 51 STKYIFEHKGCQRILFINNCQMTDDSEYYVTAGDEKCSTE 90
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 61.1 bits (148), Expect = 1e-12
Identities = 21/136 (15%), Positives = 26/136 (19%), Gaps = 52/136 (38%)
Query: 28 NKHTLTIKNVQSTDFGNYSCVADNN-LGRAKKYMELSVSV-------------------- 66
H TI + +Y C A + L V
Sbjct: 142 PWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRG 201
Query: 67 -------------------------------SDRRLMETRGNKHTLTIKNVQSTDFGNYS 95
TL + V GNYS
Sbjct: 202 EAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYS 261
Query: 96 CVADNNLGRAKKYMEL 111
CVA N G+ M
Sbjct: 262 CVASNVQGKHSTSMFF 277
Score = 60.4 bits (146), Expect = 3e-12
Identities = 16/128 (12%), Positives = 25/128 (19%), Gaps = 44/128 (34%)
Query: 18 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGN 77
S + + G+ L+ N + G Y C + + L V R
Sbjct: 39 SPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQE 98
Query: 78 --------------------------------------------KHTLTIKNVQSTDFGN 93
H TI + +
Sbjct: 99 VVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQD 158
Query: 94 YSCVADNN 101
Y C A
Sbjct: 159 YQCSALMG 166
Score = 56.9 bits (137), Expect = 4e-11
Identities = 14/61 (22%), Positives = 19/61 (31%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
+ + + TL + V GNYSCVA N G+ M
Sbjct: 219 VFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFR 278
Query: 64 V 64
V
Sbjct: 279 V 279
Score = 44.6 bits (105), Expect = 1e-06
Identities = 8/46 (17%), Positives = 15/46 (32%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
S + + G+ L+ N + G Y C + + L
Sbjct: 39 SPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLY 84
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 61.3 bits (148), Expect = 1e-12
Identities = 18/150 (12%), Positives = 38/150 (25%), Gaps = 41/150 (27%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
+SW R T + + + +C+ + ++ R K+ + L+
Sbjct: 168 VSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLN 227
Query: 64 V---------SVSDRRLME---------------------TRGNK-----------HTLT 82
V ++ T N
Sbjct: 228 VQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFF 287
Query: 83 IKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+ + G Y C A N +G +E++
Sbjct: 288 KGPINYSLAGTYICEATNPIGTRSGQVEVN 317
Score = 45.9 bits (108), Expect = 4e-07
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W + V + N+ + + G Y C A N +G +E+++
Sbjct: 266 HWTTLNGSLPKGVEAQ-------NRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNI 318
Score = 42.8 bits (100), Expect = 5e-06
Identities = 12/154 (7%), Positives = 34/154 (22%), Gaps = 54/154 (35%)
Query: 13 IEPSVSDR-RLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK------------- 58
+ +R + T+ + ++ D G Y C ++
Sbjct: 74 VLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTN 133
Query: 59 -------------------------------------YMELSVSVSDRRLMETRGNKH-- 79
L + + G
Sbjct: 134 WIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVI 193
Query: 80 -TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+ + + +C+ + ++ R K+ + L+
Sbjct: 194 SRYRLVPSREAHQQSLACIVNYHMDRFKESLTLN 227
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 57.7 bits (140), Expect = 2e-12
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
WY + ++ S + TL I + + D G Y V N G A Y L V
Sbjct: 41 KWYHNGVELQES--SKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98
Query: 65 SVSD 68
+ D
Sbjct: 99 TGGD 102
Score = 48.8 bits (117), Expect = 6e-09
Identities = 11/39 (28%), Positives = 14/39 (35%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
S + TL I + + D G Y V N G A
Sbjct: 52 SSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEA 90
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 57.3 bits (139), Expect = 2e-12
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W +D I + + L I ++D G Y+C N+ G +L++
Sbjct: 39 IWTKDGKAITQG--GKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 48.8 bits (117), Expect = 4e-09
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
++ + + L I ++D G Y+C N+ G
Sbjct: 47 ITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSV 88
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 57.3 bits (139), Expect = 2e-12
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SWY + ++ +++ + H+L + V+++D G Y+CVA N G A ++L V
Sbjct: 38 SWYLNGRTVQSD-DLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
Score = 47.3 bits (113), Expect = 2e-08
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+++ + H+L + V+++D G Y+CVA N G A ++L
Sbjct: 50 DLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 57.9 bits (140), Expect = 2e-12
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W +D + S L++ L + VQ D G Y C D+ ++V
Sbjct: 45 RWTKDGEEVVES--PALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESASF----TVTV 98
Query: 65 SVSDRRLMETR 75
+ R++ +
Sbjct: 99 TEPPVRIIYSG 109
Score = 50.1 bits (120), Expect = 2e-09
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
S L++ L + VQ D G Y C D+
Sbjct: 56 SPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESASFT 95
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 57.4 bits (139), Expect = 2e-12
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 57
+WY+D + S + +E G L ++ + G YSC A +
Sbjct: 43 TWYKDGKKLSSS--SKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLSFR 93
Score = 50.9 bits (122), Expect = 9e-10
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
+S S + +E G L ++ + G YSC A +
Sbjct: 51 LSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLSFR 93
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 57.3 bits (139), Expect = 2e-12
Identities = 14/52 (26%), Positives = 20/52 (38%)
Query: 6 WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 57
W+++ I P R + G KH L I+ D YS + AK
Sbjct: 40 WFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAK 91
Score = 50.8 bits (122), Expect = 8e-10
Identities = 12/46 (26%), Positives = 16/46 (34%)
Query: 61 ELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
E+ R + G KH L I+ D YS + AK
Sbjct: 46 EIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAK 91
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 59.6 bits (144), Expect = 3e-12
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKH------TLTIKNVQSTDFGNYSCVADNNLGRAKK 58
SW++D + + + + + L V + D G Y C A N G A +
Sbjct: 138 SWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMR 197
Query: 59 YMELSVSVSD 68
+ +
Sbjct: 198 SEAAHMDAVE 207
Score = 54.2 bits (130), Expect = 3e-10
Identities = 21/168 (12%), Positives = 39/168 (23%), Gaps = 61/168 (36%)
Query: 5 SWY-QDTFLIEPSVSDRRLMETRGNKH-----TLTIKNVQSTDFGNYSCVADNNLGR--A 56
W + ++ ++ +T +V D G Y+C+ G+
Sbjct: 34 EWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYG 93
Query: 57 KKYMELSVSVS--------------------------------------DRRLMETRGNK 78
+ + L+V V ++ K
Sbjct: 94 EVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKK 153
Query: 79 HTLTI---------------KNVQSTDFGNYSCVADNNLGRAKKYMEL 111
+ V + D G Y C A N G A +
Sbjct: 154 TRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAA 201
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 57.1 bits (138), Expect = 3e-12
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKH-----TLTIKNVQSTDFGNYSCVADNNLGRAKKY 59
W+ + ++ S + H L + N + G+Y+ +A N G+ +K
Sbjct: 34 QWFYNGAILNES--KYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ 91
Query: 60 MELSV 64
+
Sbjct: 92 ISAHF 96
Score = 50.1 bits (120), Expect = 2e-09
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 64 VSVSDRRLMETRGNKH-----TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
++ S + H L + N + G+Y+ +A N G+ +K + +
Sbjct: 42 LNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 56.9 bits (138), Expect = 3e-12
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+WY +E S ++ + L +K++ D G Y C N+ G Y EL V
Sbjct: 35 TWYFGVRQLENS--EKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 47.7 bits (114), Expect = 1e-08
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
S++ + L +K++ D G Y C N+ G Y EL
Sbjct: 46 SEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 56.9 bits (138), Expect = 3e-12
Identities = 15/59 (25%), Positives = 18/59 (30%), Gaps = 6/59 (10%)
Query: 6 WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W + S + G KH L + N Q G S A N A L V
Sbjct: 38 WKLKGQPLAAS--PDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSAAN----LKV 90
Score = 51.1 bits (123), Expect = 5e-10
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
++ S + G KH L + N Q G S A N A
Sbjct: 45 LAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSAAN 87
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 56.9 bits (138), Expect = 4e-12
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 6 WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 57
W +D I S + + G L I+ D G Y+C + + A
Sbjct: 41 WLKDRKAIRKS--QKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKSTAS 90
Score = 51.5 bits (124), Expect = 4e-10
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
+ S + + G L I+ D G Y+C + + A
Sbjct: 48 IRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKSTAS 90
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 56.6 bits (137), Expect = 5e-12
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 57
+WY+D +E S + +++ G KH L + + D G + C +
Sbjct: 42 TWYKDGQKVEES--ELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSAFFG 92
Score = 50.5 bits (121), Expect = 1e-09
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
S+ +++ G KH L + + D G + C +
Sbjct: 53 SELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSAFFG 92
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 56.6 bits (137), Expect = 6e-12
Identities = 15/66 (22%), Positives = 22/66 (33%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W++D I P + +L D GNY+ +A N GR L V
Sbjct: 41 YWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMV 100
Query: 65 SVSDRR 70
+
Sbjct: 101 QAVNSG 106
Score = 46.6 bits (111), Expect = 4e-08
Identities = 11/49 (22%), Positives = 17/49 (34%)
Query: 57 KKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
K ++S + +L D GNY+ +A N GR
Sbjct: 44 KDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRI 92
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 59.2 bits (143), Expect = 7e-12
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SW +D E S R +E++GNK +T K++ D G YSC + G A Y+
Sbjct: 35 SWSKDYVSTEDS--PRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEE 92
Query: 65 SVS 67
+
Sbjct: 93 ELK 95
Score = 57.3 bits (138), Expect = 4e-11
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
WY+D I ++ + TL I D G Y + ++ G+ K ++L
Sbjct: 255 VWYKDEREISVD--EKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310
Score = 56.5 bits (136), Expect = 7e-11
Identities = 9/80 (11%), Positives = 24/80 (30%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
++ + I + ++ + ++ +Q D G Y+ + + L
Sbjct: 141 NYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVG 200
Query: 65 SVSDRRLMETRGNKHTLTIK 84
V + E + K
Sbjct: 201 DVFKKLQKEAEFQRQEWIRK 220
Score = 53.8 bits (129), Expect = 6e-10
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113
S R +E++GNK +T K++ D G YSC + G A Y+ E
Sbjct: 46 SPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEE 92
Score = 49.2 bits (117), Expect = 3e-08
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+SV ++ + TL I D G Y + ++ G+ K ++L
Sbjct: 263 ISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 309
Score = 45.8 bits (108), Expect = 5e-07
Identities = 6/45 (13%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 64 VSVSDRRLMETRGNK--HTLTIKNVQSTDFGNYSCVADNNLGRAK 106
+ + M N + ++ +Q D G Y+ +
Sbjct: 149 IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNH 193
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 56.2 bits (136), Expect = 7e-12
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 6 WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W ++ ++ S DR + +G H L I N + D G+Y D ++ V
Sbjct: 39 WTKNGLPVQES--DRLKVVQKGRIHKLVIANALTEDEGDYVFAPDA--YNVTLPAKVHV 93
Score = 49.6 bits (119), Expect = 3e-09
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN 100
V SDR + +G H L I N + D G+Y D
Sbjct: 46 VQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDA 82
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 56.1 bits (136), Expect = 7e-12
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SW ++ + P R E G L I + D G Y+C A N G + L V
Sbjct: 38 SWLRNRQPVRPD-QRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 49.6 bits (119), Expect = 3e-09
Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 60 MELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
+ R E G L I + D G Y+C A N G
Sbjct: 44 QPVRPD-QRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGAR 88
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 59.0 bits (142), Expect = 8e-12
Identities = 13/151 (8%), Positives = 35/151 (23%), Gaps = 43/151 (28%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGN-KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
+W+ D + + + + D N +C ++ + + ++
Sbjct: 151 TWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVN 210
Query: 64 VSV-----------SDRRLME---------------------TRGNK----------HTL 81
++V + + + L
Sbjct: 211 LTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQL 270
Query: 82 TIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
I+ V C N LG + + +
Sbjct: 271 LIRPVDKPINTTLICNVTNALGARQAELTVQ 301
Score = 47.4 bits (112), Expect = 1e-07
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 30 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
L I+ V C N LG + + + V
Sbjct: 268 AQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 40.1 bits (93), Expect = 4e-05
Identities = 18/139 (12%), Positives = 29/139 (20%), Gaps = 50/139 (35%)
Query: 16 SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN-LGRAKKYMELSVSV-------- 66
RL N +L + ++ D GNY+C+ G + L V
Sbjct: 66 EFVAARLGAELRN-ASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEV 124
Query: 67 -----------------------------SDRRLMETRGNKH-----------TLTIKNV 86
SD M +
Sbjct: 125 QKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPS 184
Query: 87 QSTDFGNYSCVADNNLGRA 105
D N +C ++
Sbjct: 185 SQVDGKNVTCKVEHESFEK 203
Score = 34.3 bits (78), Expect = 0.005
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
+ RL N +L + ++ D GNY+C+ ++
Sbjct: 65 LEFVAARLGAELRN-ASLRMFGLRVEDEGNYTCLFVTFPQGSR 106
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 56.2 bits (136), Expect = 8e-12
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 6 WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W ++ I+ S + + E+ G K TLTI D Y CV EL V
Sbjct: 49 WLKNGQEIQMS-GSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCST----ELFV 102
Score = 48.9 bits (117), Expect = 5e-09
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 57 KKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
K E+ +S + + E+ G K TLTI D Y CV +
Sbjct: 51 KNGQEIQMS-GSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTE 99
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 55.5 bits (134), Expect = 1e-11
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
M W ++ + + R +L +++V +D GNY+CV +N G L
Sbjct: 40 MRWLKNGKEFKQE-HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98
Query: 64 V 64
V
Sbjct: 99 V 99
Score = 47.1 bits (112), Expect = 2e-08
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
+ R +L +++V +D GNY+CV +N G L
Sbjct: 53 HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 97
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 57.6 bits (139), Expect = 1e-11
Identities = 27/155 (17%), Positives = 48/155 (30%), Gaps = 54/155 (34%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGN--KHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYME 61
W++D + + ++ + T++ + D G Y CVA N +G+A ++
Sbjct: 42 EWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHAS 101
Query: 62 LSVSVS---------------------------------------DRRLMETRGNK---- 78
L ++V L + +
Sbjct: 102 LQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGAS 161
Query: 79 --------HTLTIKNVQSTDFGNYSCVADNNLGRA 105
L I NV+ D GNY C+A N +G
Sbjct: 162 SRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTR 196
Score = 50.6 bits (121), Expect = 6e-09
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 5 SWYQDTFLIEPSVSDRRLMETR---GNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYM 60
W +D ++ + +R + L I NV+ D GNY C+A N +G + Y
Sbjct: 142 IWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYA 201
Query: 61 ELSVSV 66
+L V V
Sbjct: 202 KLIVQV 207
Score = 37.5 bits (87), Expect = 3e-04
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
S R + T++ + D G Y CVA N +G+A
Sbjct: 57 SHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAV 96
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 56.1 bits (135), Expect = 1e-11
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 5 SWYQDTFLIEPSVSDRRLMET----RGNKHTLTIKNVQSTDFG-NYSCVADNNLGRAKKY 59
+W ++E S R +ET G TLTI N+ DF Y+C A N+ G +
Sbjct: 47 AWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEI 106
Query: 60 MELSVSVSD 68
+ L S+
Sbjct: 107 IRLKEQGSE 115
Score = 45.7 bits (108), Expect = 1e-07
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 57 KKYMELSVSVSDRRLMET----RGNKHTLTIKNVQSTDFG-NYSCVADNNLGRAKKYMEL 111
K L S R +ET G TLTI N+ DF Y+C A N+ G + + L
Sbjct: 50 WKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRL 109
Query: 112 SE 113
E
Sbjct: 110 KE 111
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 55.1 bits (133), Expect = 2e-11
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W + + R ++ G + L I ++ D G YSC+ A L+V
Sbjct: 39 EWKKGPETLRDG--GRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQERTSA----TLTV 92
Score = 48.5 bits (116), Expect = 6e-09
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
R ++ G + L I ++ D G YSC+ A
Sbjct: 50 GGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQERTSAT 89
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 57.2 bits (138), Expect = 2e-11
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
M W ++ + + R +L +++V +D GNY+CV +N G L
Sbjct: 51 MRWLKNGKEFKQEHRIGG-YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 109
Query: 64 VSVSDR 69
V R
Sbjct: 110 VVERSR 115
Score = 48.4 bits (115), Expect = 3e-08
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 64 VSVSDR-RLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
R + R +L +++V +D GNY+CV +N G L
Sbjct: 60 FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 109
Score = 47.6 bits (113), Expect = 9e-08
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+ D + + + N L + NV D G Y C N +G+A + L+V
Sbjct: 162 KYGPDGLPYLKVLKHSGINSS--NAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
Score = 43.7 bits (103), Expect = 2e-06
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
N L + NV D G Y C N +G+A + L+
Sbjct: 182 SNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLT 218
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 55.1 bits (133), Expect = 3e-11
Identities = 7/65 (10%), Positives = 19/65 (29%), Gaps = 5/65 (7%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W + ++ R + T ++ +D G Y + + +
Sbjct: 57 VWTKGGAPLDT---SRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDT--ATIRI 111
Query: 65 SVSDR 69
V ++
Sbjct: 112 RVVEK 116
Score = 48.2 bits (115), Expect = 1e-08
Identities = 5/40 (12%), Positives = 11/40 (27%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
+ R + T ++ +D G Y +
Sbjct: 67 TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDT 106
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 56.8 bits (137), Expect = 3e-11
Identities = 25/156 (16%), Positives = 42/156 (26%), Gaps = 56/156 (35%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQS-TDFGNYSCVADNNLGRAKKYMELS 63
W + + + G+ L I+ +++ D Y CVA NN+G L+
Sbjct: 39 VWNKKGKKVSNQ-RFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLT 97
Query: 64 VSVS-------------------------------------------DRRLMETRGNKHT 80
V D ++T N
Sbjct: 98 VLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGR 157
Query: 81 LTI-----------KNVQSTDFGNYSCVADNNLGRA 105
+ + + +D G Y CVA N+ G
Sbjct: 158 IKQLRSESIGALQIEQSEESDQGKYECVATNSAGTR 193
Score = 55.6 bits (134), Expect = 7e-11
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 5 SWYQDTFLIEPSVSDRRLMETR-GNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMEL 62
+W++D ++ S ++ R+ + R + L I+ + +D G Y CVA N+ G L
Sbjct: 141 TWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANL 200
Query: 63 SVSVS 67
V +
Sbjct: 201 YVRGT 205
Score = 42.9 bits (101), Expect = 3e-06
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 64 VSVSDRRLMETR-GNKHTLTIKNVQS-TDFGNYSCVADNNLGRAKKYMELS 112
VS ++E G+ L I+ +++ D Y CVA NN+G L+
Sbjct: 47 VSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLT 97
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 56.9 bits (137), Expect = 4e-11
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
+SW ++ ++ R + +L +++V +D GNY+CV +N G ++ L
Sbjct: 47 ISWLKNGREFRGE-HRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 105
Query: 64 VSVS 67
V
Sbjct: 106 VLER 109
Score = 48.4 bits (115), Expect = 4e-08
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
++ R + +L +++V +D GNY+CV +N G ++ L
Sbjct: 60 HRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 105
Score = 46.5 bits (110), Expect = 2e-07
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 15 PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+V + E+ L + NV D G Y C A N +G A+K LSV
Sbjct: 167 VTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSV 216
Score = 43.8 bits (103), Expect = 2e-06
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
V+V + E+ L + NV D G Y C A N +G A+K LS
Sbjct: 167 VTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLS 215
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 54.3 bits (131), Expect = 4e-11
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W++D + +++ LTI+ V+ D G Y+C A + LG AK +
Sbjct: 43 MWFKDNETLVED--SGIVLKDGN--RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 98
Query: 65 SVSDRR 70
+ +
Sbjct: 99 EGAQEK 104
Score = 45.0 bits (107), Expect = 1e-07
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+ +++ LTI+ V+ D G Y+C A + LG AK
Sbjct: 51 LVEDSGIVLKDGN--RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 57.0 bits (137), Expect = 4e-11
Identities = 11/69 (15%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 4 MSWY---QDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60
W +++ + V+D L + L I + + D G Y+C ++ +
Sbjct: 213 FEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEK 272
Query: 61 ELSVSVSDR 69
++++V +
Sbjct: 273 AINITVVES 281
Score = 47.0 bits (111), Expect = 1e-07
Identities = 11/56 (19%), Positives = 22/56 (39%)
Query: 57 KKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
K+ L V+D L + L I + + D G Y+C ++ + ++
Sbjct: 220 KESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275
Score = 45.8 bits (108), Expect = 4e-07
Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 9/99 (9%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM-ELS 63
W + + ++ + LT+ N+ D G Y C +++ G L
Sbjct: 29 VWERMSQEPPQEMAKAQDGTFSS---VLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLY 85
Query: 64 VSVSDRR--LMETRGNKHTLTIKNVQSTDFGNYSCVADN 100
+ V D + + + + + C +
Sbjct: 86 IFVPDPTVGFLPNDAEELFIFLTEITEITI---PCRVTD 121
Score = 40.8 bits (95), Expect = 2e-05
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 46 SCVADNNLGRAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
+C + + E ++ + LT+ N+ D G Y C +++ G
Sbjct: 21 TCSGSAPVVWERMSQEPPQEMAKAQDGTFSS---VLTLTNLTGLDTGEYFCTHNDSRGLE 77
Query: 106 KK 107
Sbjct: 78 TD 79
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 54.0 bits (130), Expect = 5e-11
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV 66
LTI+NVQ +D G Y C N + L V V
Sbjct: 63 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98
Score = 49.0 bits (117), Expect = 4e-09
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
LTI+NVQ +D G Y C N + L
Sbjct: 63 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 56.7 bits (136), Expect = 5e-11
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKH-----TLTIKNVQSTDFGNYSCVADNNLGRAKK 58
W + + + RG+ + TLTI + + D G + C A+N G A
Sbjct: 221 SMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANV 280
Query: 59 YMELSV 64
L V
Sbjct: 281 TTTLKV 286
Score = 49.7 bits (118), Expect = 1e-08
Identities = 14/58 (24%), Positives = 22/58 (37%)
Query: 54 GRAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
+++ S R + TLTI + + D G + C A+N G A L
Sbjct: 227 NPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTL 284
Score = 44.0 bits (103), Expect = 2e-06
Identities = 22/140 (15%), Positives = 37/140 (26%), Gaps = 55/140 (39%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W T+ E K+ + ++T G Y+C N L + + + V
Sbjct: 41 RWTFKTYFNEMV---------ENKKNEWIQEKAEATRTGTYTCSNSNGLTSS---IYVFV 88
Query: 65 SVSDR------------------------------RLMETRG------------NKHTLT 82
+ L+E G K +T
Sbjct: 89 RDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGIT 148
Query: 83 IKNVQ-STDFGNYSCVADNN 101
IKNV+ + C A +
Sbjct: 149 IKNVKRAYHRLCVRCAAQRD 168
Score = 37.0 bits (85), Expect = 5e-04
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 73 ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
K+ + ++T G Y+C N L +
Sbjct: 51 MVENKKNEWIQEKAEATRTGTYTCSNSNGLTSS 83
Score = 33.9 bits (77), Expect = 0.006
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 28 NKHTLTIKNVQ-STDFGNYSCVADNNLGRAKKYMELSVSV 66
K +TIKNV+ + C A + G + ++ V
Sbjct: 143 PKAGITIKNVKRAYHRLCVRCAAQRD-GTWLHSDKFTLKV 181
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 53.9 bits (130), Expect = 6e-11
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 57
+W + + S + G LTI ++ D Y+C RA+
Sbjct: 40 TWRKGLLELRAS--GKHQPSQEGLTLRLTISALEKADSDTYTCDIGQAQSRAQ 90
Score = 47.7 bits (114), Expect = 1e-08
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
S + G LTI ++ D Y+C RA+
Sbjct: 51 SGKHQPSQEGLTLRLTISALEKADSDTYTCDIGQAQSRAQ 90
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 56.2 bits (135), Expect = 1e-10
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
+SW ++ ++ R + +L +++V +D GNY+CV +N G ++ L
Sbjct: 155 ISWLKNGREFRGEHRIGG-IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 213
Query: 64 V 64
V
Sbjct: 214 V 214
Score = 49.2 bits (117), Expect = 3e-08
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 25 TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLME 73
T L++ NV D G Y+C+A N++G + L V ++ L+E
Sbjct: 286 TDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELVE 334
Score = 47.3 bits (112), Expect = 1e-07
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 72 METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
++ R + +L +++V +D GNY+CV +N G ++ L
Sbjct: 173 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 213
Score = 46.1 bits (109), Expect = 3e-07
Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 6/87 (6%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W +D + PS +R L+ L + N D G YSC +
Sbjct: 42 VWVKDGTGLVPS--ERVLVGP----QRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVT 95
Query: 65 SVSDRRLMETRGNKHTLTIKNVQSTDF 91
E ++ T + + +
Sbjct: 96 DAPSSGDDEDGEDEAEDTGVDTGAPYW 122
Score = 42.7 bits (100), Expect = 5e-06
Identities = 9/46 (19%), Positives = 13/46 (28%), Gaps = 3/46 (6%)
Query: 66 VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
V R++ L + N D G YSC +
Sbjct: 51 VPSERVLVGPQ---RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVR 93
Score = 42.3 bits (99), Expect = 7e-06
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 74 TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
T L++ NV D G Y+C+A N++G + L
Sbjct: 286 TDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 54.1 bits (130), Expect = 1e-10
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W++D ++ S ++ +LTI V D Y+C A N+LG A EL V
Sbjct: 74 MWFKDDNPVKES-RHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
Query: 65 SVSDRR 70
+
Sbjct: 133 ETMGKE 138
Score = 46.0 bits (109), Expect = 1e-07
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 64 VSVSDR-RLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
V S ++ +LTI V D Y+C A N+LG A
Sbjct: 82 VKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEA 124
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 55.6 bits (133), Expect = 1e-10
Identities = 25/151 (16%), Positives = 34/151 (22%), Gaps = 52/151 (34%)
Query: 5 SWY---QDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 61
WY QD L EP K L + D GNY+C+ N +K
Sbjct: 51 IWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFP 110
Query: 62 LSVSVSD-------------------------------------------------RRLM 72
L V D +
Sbjct: 111 LEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFN 170
Query: 73 ETRGNKHTLTIKNVQSTDFGNYSCVADNNLG 103
L+ ++ GNY+CV
Sbjct: 171 NVIPEGMNLSFLIALISNNGNYTCVVTYPEN 201
Score = 50.6 bits (120), Expect = 8e-09
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 9/75 (12%)
Query: 3 MMSWYQDTFLIEPSVSDRRLMETRGNK--------HTLTIKNVQSTDFG-NYSCVADNNL 53
+ W D + D + E+ + L+IK V S D +Y C A +
Sbjct: 261 EVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAK 320
Query: 54 GRAKKYMELSVSVSD 68
G K ++ V
Sbjct: 321 GEVAKAAKVKQKVPA 335
Score = 43.3 bits (101), Expect = 4e-06
Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 11/99 (11%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL----GRAKKYM 60
+WY + I+ L+ ++ GNY+CV + +
Sbjct: 158 TWYMGCYKIQNF------NNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTL 211
Query: 61 ELSVSVSDRRLM-ETRGNKHTLTIKNVQSTDFGNYSCVA 98
+ V S + + + + + + + C
Sbjct: 212 TVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTV 250
Score = 42.2 bits (98), Expect = 8e-06
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 54 GRAKKYMELSVSVSDRRLMETRGNK---HTLTIKNVQSTDFG-NYSCVADNNLGRAKKYM 109
G+ + + V++++ ++ L+IK V S D +Y C A + G K
Sbjct: 268 GKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAA 327
Query: 110 ELSE 113
++ +
Sbjct: 328 KVKQ 331
Score = 41.4 bits (96), Expect = 1e-05
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
K L + D GNY+C+ N +K L
Sbjct: 77 EKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLE 112
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 52.8 bits (127), Expect = 2e-10
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W+ D + + + G H LT++ + D G A + A L V
Sbjct: 46 HWFLDKTPLHAN-ELNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGDQRASAA----LRV 100
Score = 46.6 bits (111), Expect = 4e-08
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 64 VSVSDRRLMETR-GNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
+ ++ ++ + G H LT++ + D G A + A
Sbjct: 54 LHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGDQRASAA 97
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 55.2 bits (133), Expect = 2e-10
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
++W++D ++ S + + GN + LTI V+ D G Y+ A N+ G ++ + L+
Sbjct: 514 VTWHKDDRELKQS--VKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571
Query: 64 VS 65
V+
Sbjct: 572 VT 573
Score = 46.0 bits (109), Expect = 4e-07
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
+ S + + GN + LTI V+ D G Y+ A N+ G ++ + L
Sbjct: 523 LKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 570
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 52.5 bits (126), Expect = 3e-10
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W +D L+ S + +E L I+ + D G Y+C+A G A + V
Sbjct: 41 LWRKDGVLVSTQDSRIKQLEN----GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEV 96
Query: 65 SV 66
Sbjct: 97 QE 98
Score = 42.8 bits (101), Expect = 1e-06
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
VS D R ++ N L I+ + D G Y+C+A G A
Sbjct: 49 VSTQDSR-IKQLEN-GVLQIRYAKLGDTGRYTCIASTPSGEA 88
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 51.9 bits (125), Expect = 3e-10
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W ++ P D+ + G L ++N++ D G YSC + A L+V
Sbjct: 40 KWCYGNNVLRPG--DKYSLRQEGAMLELVVRNLRPQDSGRYSCSFGDQTTSA----TLTV 93
Score = 45.4 bits (108), Expect = 1e-07
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
D+ + G L ++N++ D G YSC + A
Sbjct: 51 GDKYSLRQEGAMLELVVRNLRPQDSGRYSCSFGDQTTSAT 90
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 51.2 bits (123), Expect = 5e-10
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 6 WYQDTFLIEPS--VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 57
W ++ + R + G +H L +V D G Y + + A+
Sbjct: 41 WMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGGQCEAE 94
Score = 45.4 bits (108), Expect = 1e-07
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 63 SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
S R + G +H L +V D G Y + + A+
Sbjct: 51 EDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGGQCEAE 94
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 53.3 bits (128), Expect = 6e-10
Identities = 30/151 (19%), Positives = 42/151 (27%), Gaps = 49/151 (32%)
Query: 5 SWYQDTFLIEPSVSD---RRLMETRGNKHTLTIK--NVQSTDFGNYSCVADNNLGRAK-K 58
WY+ +E D R++ G+ L I D G Y CVA N LG A
Sbjct: 42 EWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSH 101
Query: 59 YMELSVSVS---------------------------------------DRRLMETRG--- 76
L V++ L +
Sbjct: 102 DASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERIT 161
Query: 77 -NKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
L I + +D G Y CV N +G +
Sbjct: 162 IRGGKLMITYTRKSDAGKYVCVGTNMVGERE 192
Score = 51.7 bits (124), Expect = 2e-09
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELS 63
SW +D ++ +R + L I + +D G Y CV N +G + + EL+
Sbjct: 145 SWKKDGSPLDDK-DERITIRG----GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELT 199
Query: 64 VSV 66
V
Sbjct: 200 VLE 202
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 53.0 bits (127), Expect = 8e-10
Identities = 9/80 (11%), Positives = 24/80 (30%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
++ + I + ++ + ++ +Q D G Y+ + + L
Sbjct: 36 NYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVG 95
Query: 65 SVSDRRLMETRGNKHTLTIK 84
V + E + K
Sbjct: 96 DVFKKLQKEAEFQRQEWIRK 115
Score = 51.9 bits (124), Expect = 2e-09
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
WY+D I ++ + TL I D G Y + ++ G+ K ++L
Sbjct: 150 VWYKDEREISVD--EKHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205
Score = 46.5 bits (110), Expect = 2e-07
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+SV ++ + TL I D G Y + ++ G+ K ++L
Sbjct: 158 ISVDEKHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 204
Score = 43.8 bits (103), Expect = 1e-06
Identities = 6/45 (13%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 64 VSVSDRRLMETRGNK--HTLTIKNVQSTDFGNYSCVADNNLGRAK 106
+ + M N + ++ +Q D G Y+ +
Sbjct: 44 IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNH 88
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 50.5 bits (121), Expect = 1e-09
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SW ++ F P R ++ +G TL IKN++ +D G Y+CVA ++ G L V
Sbjct: 41 SWLKEGFTF-PGRDPRATIQEQG---TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96
Query: 65 SVS 67
+ S
Sbjct: 97 TES 99
Score = 42.4 bits (100), Expect = 2e-06
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
R ++ +G TL IKN++ +D G Y+CVA ++ G
Sbjct: 50 PGRDPRATIQEQG---TLQIKNLRISDTGTYTCVATSSSGET 88
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 50.4 bits (120), Expect = 1e-09
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 4 MSWYQDTFLIEPSVSDRRL-------METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 56
+ W++ ++ S + L ++ L I + Q G+Y C
Sbjct: 39 VKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFD 98
Query: 57 KKYMELSV 64
L+V
Sbjct: 99 CSNFNLTV 106
Score = 44.2 bits (104), Expect = 3e-07
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
+ + D ++ L I + Q G+Y C
Sbjct: 57 LQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFD 98
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 50.1 bits (120), Expect = 1e-09
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 11/62 (17%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W +D + L + + D G YSCVA ++ ++ +S+
Sbjct: 43 HWMKDGVPLPLP-----------PSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
Query: 65 SV 66
S+
Sbjct: 92 SI 93
Score = 44.7 bits (106), Expect = 1e-07
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
L + + D G YSCVA ++ +
Sbjct: 54 PPSPVLILPEIGPQDQGTYSCVATHSSHGPQ 84
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens}
SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 50.7 bits (121), Expect = 1e-09
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 5/66 (7%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHT-----LTIKNVQSTDFGNYSCVADNNLGRAKK 58
+ W + ++ + T L + + GNY+ +A N G+A
Sbjct: 32 LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA 91
Query: 59 YMELSV 64
+ +
Sbjct: 92 SIMAAF 97
Score = 44.2 bits (104), Expect = 5e-07
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
Query: 57 KKYMELSVSVSDRRLMETRGNKHT-----LTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
L+ + T L + + GNY+ +A N G+A +
Sbjct: 36 FNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA 95
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 50.2 bits (120), Expect = 2e-09
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+W +D + S +R + + +++ D G Y+CV + G Y ++V
Sbjct: 41 NWLRDGVQLVES--NRTRIT----GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Query: 65 S 65
S
Sbjct: 95 S 95
Score = 42.1 bits (99), Expect = 2e-06
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 74 TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
TR + +++ D G Y+CV + G Y ++
Sbjct: 55 TRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 52.1 bits (124), Expect = 2e-09
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKH------TLTIKNVQSTDFGNYSCVADNNLGRAK 57
+W + + R ++T+ TLTI V +D G Y+C A + L K
Sbjct: 139 FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK 198
Query: 58 KYMELSV 64
+ V
Sbjct: 199 NSTFVRV 205
Score = 46.7 bits (110), Expect = 1e-07
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 73 ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
E + TLTI V +D G Y+C A + L K +
Sbjct: 165 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 204
Score = 35.9 bits (82), Expect = 0.001
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV 66
+K TI + + G C A N + M + V V
Sbjct: 62 SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVV 100
Score = 34.4 bits (78), Expect = 0.003
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
+K TI + + G C A N +
Sbjct: 62 SKKGFTIPSYMISYAGMVFCEAKINDESYQ 91
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 50.9 bits (121), Expect = 2e-09
Identities = 10/49 (20%), Positives = 21/49 (42%)
Query: 16 SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
R +ET ++ T++ + D G Y+ N +G + + + V
Sbjct: 89 ETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137
Score = 48.6 bits (115), Expect = 1e-08
Identities = 10/52 (19%), Positives = 22/52 (42%)
Query: 61 ELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+L R +ET ++ T++ + D G Y+ N +G + + +
Sbjct: 85 KLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 136
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 52.2 bits (125), Expect = 2e-09
Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+ S+ + G L K VQ D G Y+C A +EL V
Sbjct: 279 WVSPSNEQVLSQGSNGSVSVRNG---DLFFKKVQVEDGGVYTCYAMGETFNETLSVELKV 335
Query: 65 S 65
Sbjct: 336 Y 336
Score = 46.0 bits (109), Expect = 4e-07
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
S+ + G L K VQ D G Y+C A +EL
Sbjct: 292 SNGSVSVRNG---DLFFKKVQVEDGGVYTCYAMGETFNETLSVEL 333
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 50.7 bits (121), Expect = 3e-09
Identities = 21/134 (15%), Positives = 31/134 (23%), Gaps = 46/134 (34%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA-----KKY 59
W+ + L E + S +L I N + D G Y C
Sbjct: 38 KWFHNGSLSEETNS------------SLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFS 85
Query: 60 MELSVSVS-----------------------------DRRLMETRGNKHTLTIKNVQSTD 90
L + S D ++ H ++I N D
Sbjct: 86 DWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVED 145
Query: 91 FGNYSCVADNNLGR 104
G Y C
Sbjct: 146 SGTYYCTGKVWQLD 159
Score = 43.3 bits (102), Expect = 2e-06
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 11/67 (16%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELS 63
+Y+D ++ + H ++I N D G Y C + + + ++
Sbjct: 119 IYYKDGEALKYWYEN----------HNISITNATVEDSGTYYCTGKVWQLDYESEPLNIT 168
Query: 64 VSVSDRR 70
V + R
Sbjct: 169 VIKAPRE 175
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 48.9 bits (117), Expect = 4e-09
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+W +D + S +R + + +++ D G Y+CV + G Y ++V
Sbjct: 35 NWLRDGVQLAES--NRTRITGE----EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNV 88
Query: 65 S 65
S
Sbjct: 89 S 89
Score = 43.5 bits (103), Expect = 4e-07
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 63 SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
++ S+R + + +++ D G Y+CV + G Y ++
Sbjct: 42 QLAESNRTRITGE----EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVN 87
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 48.9 bits (117), Expect = 5e-09
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 6 WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W++ + DR + G + L I+ + + D G Y C+ A L+V
Sbjct: 51 WWKGHETLRDG--DRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKERTSA----MLTV 103
Score = 44.3 bits (105), Expect = 4e-07
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
+ DR + G + L I+ + + D G Y C+ A
Sbjct: 58 LRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKERTSAM 100
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 50.6 bits (120), Expect = 8e-09
Identities = 25/152 (16%), Positives = 36/152 (23%), Gaps = 51/152 (33%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGN-YSCVADNNLGRAKKY---- 59
+W + P R L I N S D Y C G +
Sbjct: 71 NWEKIGKTRRPL-------NRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRS 123
Query: 60 ------------MELSVSVS----------------------DRRLMETRGNKH-----T 80
EL + + + G K+
Sbjct: 124 HIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQN 183
Query: 81 LTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
L I N + D G Y C + R K + +S
Sbjct: 184 LIIHNPELEDSGRYDCYVHYDDVRIKNDIVVS 215
Score = 47.9 bits (113), Expect = 9e-08
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
++WY++ + + + + L I N + D G Y C + R K + +S
Sbjct: 161 ITWYKNNQELIID--GTKYSQ---SGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVS 215
Query: 64 VSVS 67
Sbjct: 216 RCKI 219
Score = 44.8 bits (105), Expect = 1e-06
Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 4/64 (6%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNK---HTLTIKNVQSTDFGN-YSCVADNNLGRAKKYM 60
W + I + T TL +NV GN Y+C N
Sbjct: 265 DWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTT 324
Query: 61 ELSV 64
+ +
Sbjct: 325 TVVL 328
Score = 39.8 bits (92), Expect = 5e-05
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Query: 57 KKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGN-YSCVADNNLGRAKKYMEL 111
+ L V + TL +NV GN Y+C N +
Sbjct: 271 GWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 49.7 bits (118), Expect = 1e-08
Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 50/137 (36%)
Query: 15 PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG-RAKKYMEL----------- 62
+ S R ++ + G +L + + D G Y+ + R + +
Sbjct: 59 QAYSGREIIYSNG---SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFL 115
Query: 63 ---------------------------------SVSVSDRRLMETRGNKHTLTIKNVQST 89
S+ +++R M N L I ++
Sbjct: 116 QVTNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTER--MTLSQNNSILRIDPIKRE 173
Query: 90 DFGNYSCVADNNLGRAK 106
D G Y C N + +
Sbjct: 174 DAGEYQCEISNPVSVRR 190
Score = 41.6 bits (97), Expect = 1e-05
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYMELS 63
W ++ ++ + +R M N L I ++ D G Y C N + + ++L
Sbjct: 142 QWLFNSQSLQLT--ER--MTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLD 197
Query: 64 VSV 66
+
Sbjct: 198 IIF 200
Score = 34.3 bits (78), Expect = 0.004
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 79 HTLTIKNVQSTDFGNYSCVADNNLGRAKK 107
+L + + D G Y+ + R +
Sbjct: 71 GSLLFQMITMKDMGVYTLDMTDENYRRTQ 99
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 47.3 bits (113), Expect = 2e-08
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+W + I+ + R E L I++ D G Y+C+A+N LG+ ++V
Sbjct: 44 TWLLNGQPIQYA---RSTCE--AGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 43.1 bits (102), Expect = 7e-07
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 72 METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
L I++ D G Y+C+A+N LG+
Sbjct: 57 STCEAGVAELHIQDALPEDHGTYTCLAENALGQV 90
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 48.3 bits (115), Expect = 2e-08
Identities = 15/134 (11%), Positives = 27/134 (20%), Gaps = 46/134 (34%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-----KY 59
W+ + LI + D G Y+C +
Sbjct: 38 QWFHNGNLIPTHTQ------------PSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLF 85
Query: 60 MELSVSVSDRRLME---------TRGNK--------------------HTLTIKNVQSTD 90
L + E + +K T +I +
Sbjct: 86 EWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSH 145
Query: 91 FGNYSCVADNNLGR 104
G+Y C +
Sbjct: 146 SGDYHCTGNIGYTL 159
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 47.8 bits (113), Expect = 2e-08
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 4 MSW-YQDTFLIEPSVSDRRLMETRGNKH-----TLTIKNVQSTDFGNYSCVADNNLGRAK 57
+W Y + + +R L G++ TLTI V +D G Y+C A + L K
Sbjct: 42 FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK 101
Query: 58 KYMELSV 64
+ V
Sbjct: 102 NSTFVRV 108
Score = 44.0 bits (103), Expect = 6e-07
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 62 LSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
++ + + E + TLTI V +D G Y+C A + L K +
Sbjct: 57 VNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 107
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 47.3 bits (112), Expect = 4e-08
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 7/67 (10%)
Query: 5 SWYQDTFLIEPSVSDRRL-------METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 57
W++ ++ S + + L +R + I + GNY C
Sbjct: 43 KWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDS 102
Query: 58 KYMELSV 64
+L V
Sbjct: 103 CSFDLEV 109
Score = 43.1 bits (101), Expect = 1e-06
Identities = 6/43 (13%), Positives = 12/43 (27%)
Query: 63 SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
+ + + +R + I + GNY C
Sbjct: 59 HLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFD 101
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 47.6 bits (113), Expect = 6e-08
Identities = 14/134 (10%), Positives = 28/134 (20%), Gaps = 46/134 (34%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W+ + LI + I D G Y C + + +E+ +
Sbjct: 41 QWFHNESLIS------------SQASSYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHI 88
Query: 65 ----------------SVS------------------DRRLMETRGNKHTLTIKNVQSTD 90
+ + + + + I D
Sbjct: 89 GWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKD 148
Query: 91 FGNYSCVADNNLGR 104
G+Y C
Sbjct: 149 SGSYFCRGLVGSKN 162
Score = 38.7 bits (90), Expect = 8e-05
Identities = 6/63 (9%), Positives = 18/63 (28%), Gaps = 11/63 (17%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
++ Q+ + + I D G+Y C +++
Sbjct: 122 TYLQNGKDRKYFHHNS----------DFHIPKATLKDSGSYFCRGLVGSKNVSS-ETVNI 170
Query: 65 SVS 67
+++
Sbjct: 171 TIT 173
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 47.3 bits (112), Expect = 7e-08
Identities = 16/118 (13%), Positives = 29/118 (24%), Gaps = 41/118 (34%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL---------------------------- 62
I +VQ D G Y C+ KY+ +
Sbjct: 68 LFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQA 127
Query: 63 -------------SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 107
SV + + G ++ ++ N+SC+ N +
Sbjct: 128 RGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELT 185
Score = 38.9 bits (90), Expect = 9e-05
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
I +VQ D G Y C+ KY+ +
Sbjct: 68 LFHIPSVQVRDSGQYRCLVICGAAWDYKYLTV 99
Score = 33.1 bits (75), Expect = 0.009
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58
+SW + P+ + G ++ ++ N+SC+ N +
Sbjct: 135 VSWQNVS---VPANTSHIRTP-EGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELT 185
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 47.2 bits (112), Expect = 8e-08
Identities = 12/112 (10%), Positives = 30/112 (26%), Gaps = 30/112 (26%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDR--------------------- 69
TL IK++++ D Y + G+ + + +R
Sbjct: 67 TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMN 126
Query: 70 ---------RLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+ + + ++ + C A N + + +S
Sbjct: 127 GTDPELNLYQDGKHLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVS 178
Score = 36.0 bits (83), Expect = 0.001
Identities = 8/61 (13%), Positives = 18/61 (29%), Gaps = 13/61 (21%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+ YQD ++ S + ++ + C A N + + +S
Sbjct: 133 NLYQDGKHLKLS-------------QRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSC 179
Query: 65 S 65
Sbjct: 180 P 180
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 47.7 bits (112), Expect = 1e-07
Identities = 22/163 (13%), Positives = 48/163 (29%), Gaps = 59/163 (36%)
Query: 9 DTFLIEPSVSDRRLMETRGNKH---TLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL--- 62
+ + P+ + R ++ +G ++ I ++ +D G Y C A ++ KK +L
Sbjct: 161 SSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVL 220
Query: 63 -------------SVSV--------------------------------------SDRRL 71
SV+ R L
Sbjct: 221 KPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRIL 280
Query: 72 METRGNKH--TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+ + ++ I ++ D G Y C A ++ + +
Sbjct: 281 LNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQA 323
Score = 43.8 bits (102), Expect = 3e-06
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 6/69 (8%)
Query: 6 WYQDTFLIEPSVSDRR-----LMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60
W PS + + +LT+ V D G Y C +
Sbjct: 480 WNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQG-HFYGETA 538
Query: 61 ELSVSVSDR 69
+ V+V +R
Sbjct: 539 AVYVAVEER 547
Score = 41.5 bits (96), Expect = 1e-05
Identities = 12/127 (9%), Positives = 25/127 (19%), Gaps = 54/127 (42%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYM------------------------ELSVSV 66
T+ + + S D G Y C+ + + ++
Sbjct: 407 TVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHF 466
Query: 67 S----------------------------DRRLMETRGNKHTLT--IKNVQSTDFGNYSC 96
+ + N ++ + V D G Y C
Sbjct: 467 PCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWC 526
Query: 97 VADNNLG 103
Sbjct: 527 GVKQGHF 533
Score = 39.2 bits (90), Expect = 1e-04
Identities = 12/106 (11%), Positives = 28/106 (26%), Gaps = 6/106 (5%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKH--TLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 62
R L+ + ++ I ++ D G Y C A ++ +
Sbjct: 264 VVNTLGKRAPAF-EGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQ 322
Query: 63 SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY 108
+ + + + S C + ++ KY
Sbjct: 323 AWQLFVNEESTIPRSPTVVKGVAGSSVAV---LCPYNRKESKSIKY 365
Score = 38.4 bits (88), Expect = 2e-04
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 43 GNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL 102
G Y + ++ G + + + T ++ I ++ +D G Y C A ++
Sbjct: 152 GLYPVLVIDSSGYVNPNYTGRIRLDIQG---TGQLLFSVVINQLRLSDAGQYLCQAGDDS 208
Query: 103 GRAKKYME 110
KK +
Sbjct: 209 NSNKKNAD 216
Score = 37.3 bits (85), Expect = 4e-04
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 54 GRAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 109
G K E +S+ + T+ + + S D G Y C+ + +
Sbjct: 385 GWVKAQYEGRLSLLEEP----GNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVE 436
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 47.5 bits (112), Expect = 1e-07
Identities = 17/145 (11%), Positives = 33/145 (22%), Gaps = 56/145 (38%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK------- 57
+W +D E N TLT+ + S + G+Y +
Sbjct: 39 TWTKDDQPHE------------NNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFL 86
Query: 58 ---------------------KYMELSVSVSD----------------RRLMETRGNKHT 80
+EL +V + +
Sbjct: 87 MEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQD 146
Query: 81 LTIKNVQSTDFGNYSCVADNNLGRA 105
+TI+ + G Y+ +
Sbjct: 147 ITIQEFTADKNGVYTVKVWGESEDS 171
Score = 41.7 bits (97), Expect = 1e-05
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLME 73
L ++ D + CVA + +E++ S S + ME
Sbjct: 259 HLFKESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKCSME 301
Score = 40.6 bits (94), Expect = 3e-05
Identities = 7/62 (11%), Positives = 16/62 (25%), Gaps = 13/62 (20%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SW + +I +TI+ + G Y+ + +
Sbjct: 133 SWSKGEDVI-------------DTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKI 179
Query: 65 SV 66
+
Sbjct: 180 ML 181
Score = 33.6 bits (76), Expect = 0.007
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
L ++ D + CVA + +E++
Sbjct: 259 HLFKESATYDDTAKFWCVAKLYQQIEDETVEVA 291
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 47.2 bits (112), Expect = 1e-07
Identities = 14/134 (10%), Positives = 26/134 (19%), Gaps = 46/134 (34%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG---------- 54
W+ + LI + I D G Y C +
Sbjct: 41 QWFHNESLIS------------SQASSYFIDAATVDDSGEYRCQTQLSTLSDPVQLEVHI 88
Query: 55 -------RAKKYME-LSVSVS----------------DRRLMETRGNKHTLTIKNVQSTD 90
+ E + + + + + + I D
Sbjct: 89 GWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKD 148
Query: 91 FGNYSCVADNNLGR 104
G+Y C
Sbjct: 149 SGSYFCRGLVGSKN 162
Score = 39.9 bits (93), Expect = 4e-05
Identities = 6/63 (9%), Positives = 17/63 (26%), Gaps = 11/63 (17%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
++ Q+ + + I D G+Y C + +
Sbjct: 122 TYLQNGKGRKYFHHNS----------DFYIPKATLKDSGSYFCRGLVGSKN-VSSETVQI 170
Query: 65 SVS 67
+++
Sbjct: 171 TIT 173
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 47.4 bits (112), Expect = 1e-07
Identities = 16/137 (11%), Positives = 34/137 (24%), Gaps = 38/137 (27%)
Query: 14 EPSVS-DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV------ 66
V+ + + G + L +K + ++SC A + + + +
Sbjct: 125 RAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP 184
Query: 67 --------SDRRLME---------TRGN--------------KHTLTIKNVQSTDFGNYS 95
+ E GN V G Y
Sbjct: 185 RLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYL 244
Query: 96 CVADNNLGRAKKYMELS 112
C A + G + + ++
Sbjct: 245 CRARSTQGEVTREVTVN 261
Score = 40.0 bits (93), Expect = 4e-05
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 30 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
V G Y C A + G + + ++V
Sbjct: 228 PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 262
Score = 35.4 bits (81), Expect = 0.002
Identities = 10/132 (7%), Positives = 34/132 (25%), Gaps = 35/132 (26%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
+ + P+V+ ++ K ++++ + +C + ++
Sbjct: 38 VHLALGDQRLNPTVTYGN--DSFSAKASVSV-TAEDEGTQRLTCAVILGNQSQETLQTVT 94
Query: 64 VSVS--------------------------------DRRLMETRGNKHTLTIKNVQSTDF 91
+ + + G + L +K +
Sbjct: 95 IYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNG 154
Query: 92 GNYSCVADNNLG 103
++SC A +
Sbjct: 155 RSFSCSATLEVA 166
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 45.8 bits (108), Expect = 2e-07
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
T++I + D G Y C A N+ R V
Sbjct: 88 AASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
Score = 43.9 bits (103), Expect = 8e-07
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 77 NKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
T++I + D G Y C A N+ R
Sbjct: 88 AASTISIDTLVEEDTGTYECRASNDPDRN 116
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 47.0 bits (112), Expect = 2e-07
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 5 SWYQD--TFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 62
W T L S R + G TL +V +D G Y+C+ N G + L
Sbjct: 383 KWLLPNGTVLSHASRHPRISVLNDG---TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 439
Query: 63 SVSVS 67
+VS +
Sbjct: 440 NVSTA 444
Score = 41.7 bits (98), Expect = 1e-05
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
TL +V +D G Y+C+ N G + L
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 439
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 47.2 bits (111), Expect = 2e-07
Identities = 17/136 (12%), Positives = 36/136 (26%), Gaps = 38/136 (27%)
Query: 15 PSVS-DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV------- 66
V+ + + G + L +K + ++SC A + + + +
Sbjct: 311 AKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPR 370
Query: 67 ---------------SDRRLM-ETRGN--------------KHTLTIKNVQSTDFGNYSC 96
S + M + GN V G Y C
Sbjct: 371 LDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLC 430
Query: 97 VADNNLGRAKKYMELS 112
A + G + + ++
Sbjct: 431 RARSTQGEVTREVTVN 446
Score = 39.5 bits (91), Expect = 8e-05
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 30 HTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
V G Y C A + G + + ++V
Sbjct: 413 PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 447
Score = 39.1 bits (90), Expect = 1e-04
Identities = 11/97 (11%), Positives = 29/97 (29%), Gaps = 7/97 (7%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+ ++ + E T T+ + N+SC + +L + +
Sbjct: 122 VLLRGEKELKREPAVGEPAEV-----TTTVLVRRDHHGANFSCRTELDLRPQGLELFENT 176
Query: 65 S--VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD 99
S + + ++ + ++ G C D
Sbjct: 177 SAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLD 213
Score = 34.8 bits (79), Expect = 0.003
Identities = 14/134 (10%), Positives = 33/134 (24%), Gaps = 41/134 (30%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLT-IKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
+ P+V+ + + +V + D G LG + +
Sbjct: 224 HLALGDQRLNPTVT------YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQT 277
Query: 64 VSVS----------------------------------DRRLMETRGNKHTLTIKNVQST 89
V++ + + G + L +K
Sbjct: 278 VTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPED 337
Query: 90 DFGNYSCVADNNLG 103
+ ++SC A +
Sbjct: 338 NGRSFSCSATLEVA 351
Score = 32.1 bits (72), Expect = 0.026
Identities = 16/137 (11%), Positives = 34/137 (24%), Gaps = 49/137 (35%)
Query: 13 IEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVS------- 65
IE + + L+ N+ + NV + C ++ G++ L+V
Sbjct: 33 IETPLPKKELLLPGNNRKVYELSNV--QEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVE 90
Query: 66 ---------------------------------------VSDRRLMETRGNKHTLTIKNV 86
+ + T T+
Sbjct: 91 LAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEV-TTTVLVR 149
Query: 87 QSTDFGNYSCVADNNLG 103
+ N+SC + +L
Sbjct: 150 RDHHGANFSCRTELDLR 166
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 44.6 bits (106), Expect = 2e-07
Identities = 7/32 (21%), Positives = 9/32 (28%)
Query: 25 TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 56
T K + V G Y C N+
Sbjct: 45 THETKKLYMVPYVDLEHQGTYWCHVYNDRDSQ 76
Score = 44.6 bits (106), Expect = 2e-07
Identities = 7/32 (21%), Positives = 9/32 (28%)
Query: 74 TRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
T K + V G Y C N+
Sbjct: 45 THETKKLYMVPYVDLEHQGTYWCHVYNDRDSQ 76
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 45.5 bits (108), Expect = 6e-07
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVS 67
TL NV D G Y+C+ N++G L+V+ +
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGT 434
Score = 42.0 bits (99), Expect = 8e-06
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
TL NV D G Y+C+ N++G L+
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLN 430
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 43.5 bits (102), Expect = 7e-07
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKH------TLTIKNVQSTDFGNYSCVADNNLGRAK- 57
+W D ++ + + L ++NV+ T G Y CV N+ G +
Sbjct: 45 AWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYS 104
Query: 58 KYMELSV 64
L++
Sbjct: 105 VXAXLTI 111
Score = 39.7 bits (92), Expect = 2e-05
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRA 105
L ++NV+ T G Y CV N+ G +
Sbjct: 77 ILRLRNVEFTSEGXYQCVISNHFGSS 102
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 44.5 bits (104), Expect = 1e-06
Identities = 8/42 (19%), Positives = 20/42 (47%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRRLM 72
++ ++ V+ +D G Y+C ++K + L V + +
Sbjct: 202 SIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRT 243
Score = 43.7 bits (102), Expect = 2e-06
Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 5/85 (5%)
Query: 3 MMSWYQDTFLIEPSVSDRRLMETRGNKH--TLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60
++ +Y + + +R + + +L +++VQ D G Y+C
Sbjct: 55 VLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKK 114
Query: 61 ELSVSV---SDRRLMETRGNKHTLT 82
+ + V R L G+ +
Sbjct: 115 PVELWVLPEEPRDLRVRVGDTTQMR 139
Score = 41.4 bits (96), Expect = 1e-05
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
++ ++ V+ +D G Y+C ++K + L
Sbjct: 202 SIKLQTVKESDQGIYTCSIYVGKLESRKTIVLH 234
Score = 37.5 bits (86), Expect = 3e-04
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 69 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
+ +T N +L +++VQ D G Y+C
Sbjct: 74 HLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESM 110
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 43.8 bits (103), Expect = 1e-06
Identities = 19/143 (13%), Positives = 38/143 (26%), Gaps = 35/143 (24%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKH-----TLTIKNVQSTDFGNYSCVADNNLGRAKKY 59
W + + L+ + G L IKN+ D G Y+ + G
Sbjct: 31 RWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILN 90
Query: 60 MELSV-------------------------SVSDRRLMETRGNK-----HTLTIKNVQST 89
L + +D L +G + T+ +
Sbjct: 91 KALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTN 150
Query: 90 DFGNYSCVADNNLGRAKKYMELS 112
+ C A N + + + ++
Sbjct: 151 LRAPFKCKAVNRVSQESEMEVVN 173
Score = 31.1 bits (70), Expect = 0.053
Identities = 6/61 (9%), Positives = 15/61 (24%), Gaps = 13/61 (21%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
YQ + T+ + + C A N + + + ++
Sbjct: 128 KLYQGKEHLRSL-------------RQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
Query: 65 S 65
Sbjct: 175 P 175
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 42.8 bits (100), Expect = 3e-06
Identities = 17/152 (11%), Positives = 37/152 (24%), Gaps = 56/152 (36%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
SW I+ ++ + + G TLT+ V + +Y C A + +K +++
Sbjct: 33 FSWRTQ---IDSPLNGK--VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVE 87
Query: 64 VSVSDRRLMET-------------------------------RGNK-------------- 78
+ + +G+
Sbjct: 88 IYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRK 147
Query: 79 ------HTLTIKNVQSTDFGNYSCVADNNLGR 104
+T V C A ++
Sbjct: 148 SLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179
Score = 36.3 bits (83), Expect = 7e-04
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 72 METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
+ G TLT+ V + +Y C A + +K +++
Sbjct: 47 VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV 86
Score = 34.0 bits (77), Expect = 0.005
Identities = 10/73 (13%), Positives = 20/73 (27%), Gaps = 9/73 (12%)
Query: 4 MSWYQDTFLI--EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA----- 56
+ + L+ + + D +T V C A ++
Sbjct: 126 IDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPT 185
Query: 57 --KKYMELSVSVS 67
+ EL V +S
Sbjct: 186 VRQAVKELQVYIS 198
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 43.2 bits (102), Expect = 4e-06
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVS 65
TL ++ Q D G Y C+A N G L V
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476
Score = 40.1 bits (94), Expect = 4e-05
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
TL ++ Q D G Y C+A N G L
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 42.2 bits (98), Expect = 6e-06
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
L I+ + TD G C G ++
Sbjct: 214 NLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 40.3 bits (93), Expect = 3e-05
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
L I+ + TD G C G + L+
Sbjct: 214 NLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249
Score = 38.0 bits (87), Expect = 2e-04
Identities = 13/62 (20%), Positives = 18/62 (29%)
Query: 43 GNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL 102
GNY+ + + S R TL + +V D G Y C
Sbjct: 54 GNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWS 113
Query: 103 GR 104
R
Sbjct: 114 IR 115
Score = 37.6 bits (86), Expect = 3e-04
Identities = 12/52 (23%), Positives = 16/52 (30%), Gaps = 5/52 (9%)
Query: 21 RLMETRGNKHTLTIKNVQSTDFGNYSCVADN-----NLGRAKKYMELSVSVS 67
R TL + +V D G Y C G K + L V+
Sbjct: 81 RASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH 132
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 40.3 bits (94), Expect = 1e-05
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 23/72 (31%)
Query: 4 MSWYQ---------DTFLI-----------EPSVSDRRLMETR---GNKHTLTIKNVQST 40
SW TF++ + ++ +L NK+ LT+
Sbjct: 36 CSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKE 95
Query: 41 DFGNYSCVADNN 52
+ G Y C +N
Sbjct: 96 NEGYYFCSVISN 107
Score = 39.1 bits (91), Expect = 4e-05
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVADNN 101
NK+ LT+ + G Y C +N
Sbjct: 82 NNKYVLTLNKFSKENEGYYFCSVISN 107
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 41.0 bits (95), Expect = 2e-05
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 5/65 (7%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNV-QSTDFGNYSCVADNNLGRAKK-YME 61
+ W + I D ++ L++K + G Y C + Y+
Sbjct: 143 ILWQHNDKNIGG---DEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLY 199
Query: 62 LSVSV 66
L V
Sbjct: 200 LRARV 204
Score = 36.8 bits (84), Expect = 6e-04
Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 9/66 (13%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
+W++D + + +K + + G Y C N + +
Sbjct: 33 TWFKD---------GKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMG 83
Query: 65 SVSDRR 70
S D +
Sbjct: 84 SADDAK 89
Score = 35.3 bits (80), Expect = 0.002
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 67 SDRRLMETRGNKHTLTIKNV-QSTDFGNYSCVADNNLGRAKKY 108
D ++ L++K + G Y C + +
Sbjct: 154 GDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANF 196
Score = 32.9 bits (74), Expect = 0.012
Identities = 5/40 (12%), Positives = 12/40 (30%)
Query: 68 DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 107
+ + +K + + G Y C N + +
Sbjct: 38 GKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQ 77
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 40.5 bits (94), Expect = 2e-05
Identities = 11/76 (14%), Positives = 27/76 (35%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
+ W + P+V + + G ++ + SC ++L +K +S
Sbjct: 151 IQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASIS 210
Query: 64 VSVSDRRLMETRGNKH 79
++ R + + H
Sbjct: 211 IADPFFRSAQHHHHHH 226
Score = 35.1 bits (80), Expect = 0.002
Identities = 19/130 (14%), Positives = 34/130 (26%), Gaps = 45/130 (34%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV-------------------------- 64
L I NV ++D G Y C + K +EL V
Sbjct: 84 ALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRST 143
Query: 65 -------------------SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
+V + + G ++ + SC ++L
Sbjct: 144 GWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGL 203
Query: 106 KKYMELSELE 115
+K +S +
Sbjct: 204 EKTASISIAD 213
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 39.5 bits (92), Expect = 5e-05
Identities = 16/101 (15%), Positives = 26/101 (25%), Gaps = 29/101 (28%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV-----------------------SVS 67
L I NV D G+Y + K + V +
Sbjct: 70 ALRIYNVSKEDRGDYYMRMLHETEDQWKI-TMEVYEMVSKPMIYWECSNATLTCEVLEGT 128
Query: 68 DRRLMETRGNK-----HTLTIKNVQSTDFGNYSCVADNNLG 103
D L +G + T+ + + C A N +
Sbjct: 129 DVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVS 169
Score = 32.6 bits (74), Expect = 0.015
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKY 108
L I NV D G+Y + K
Sbjct: 70 ALRIYNVSKEDRGDYYMRMLHETEDQWKI 98
Score = 26.8 bits (59), Expect = 1.6
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 28 NKHTLTIKNVQSTDFGNYSCVADNNLG 54
+ T+ + + C A N +
Sbjct: 143 SLRQKTMSYQWTNLRAPFKCKAVNRVS 169
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 39.5 bits (92), Expect = 5e-05
Identities = 20/127 (15%), Positives = 37/127 (29%), Gaps = 28/127 (22%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM---- 60
F S +R ++T +LTI N+ S+D Y + N K ++
Sbjct: 37 ELENSEFRAFSSFKNRVYLDT--VSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYVLE 94
Query: 61 -----ELSVSVSDRRL-----------------METRGNKHTLTIKNVQSTDFGNYSCVA 98
+ S+ L E + T+ + + C A
Sbjct: 95 MVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKA 154
Query: 99 DNNLGRA 105
N + +
Sbjct: 155 VNRVSQE 161
Score = 30.3 bits (68), Expect = 0.090
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAK 106
+LTI N+ S+D Y + N K
Sbjct: 61 SLTIYNLTSSDEDEYEMESPNITDTMK 87
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 38.3 bits (89), Expect = 6e-05
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQS-----TDFGNYSCVADNNLGRAK-K 58
WY+ +E D R +L + D G Y CVA N LG A
Sbjct: 42 EWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSH 101
Query: 59 YMELSVSVS 67
L V+ +
Sbjct: 102 DASLEVAAA 110
Score = 30.9 bits (70), Expect = 0.036
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 69 RRLMETRGNKHTLTIKNVQST--DFGNYSCVADNNLGRAK 106
R++ G+ L I + + + D G Y CVA N LG A
Sbjct: 60 HRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAV 99
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 38.8 bits (90), Expect = 8e-05
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 23/72 (31%)
Query: 4 MSWYQ---------DTFLI------EPSVSDRRLMETR--------GNKHTLTIKNVQST 40
SW TF++ D +L ++ NK+ LT+
Sbjct: 41 CSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKE 100
Query: 41 DFGNYSCVADNN 52
+ G Y C +N
Sbjct: 101 NEGYYFCSVISN 112
Score = 37.3 bits (86), Expect = 3e-04
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVADNN 101
NK+ LT+ + G Y C +N
Sbjct: 87 NNKYVLTLNKFSKENEGYYFCSVISN 112
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 37.9 bits (87), Expect = 9e-05
Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 7/69 (10%)
Query: 3 MMSWYQDTFLIEPSVSDRRL-------METRGNKHTLTIKNVQSTDFGNYSCVADNNLGR 55
+ W++ +L S S R + L I V D G Y
Sbjct: 46 TIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTC 105
Query: 56 AKKYMELSV 64
+ V
Sbjct: 106 DSCGFNIDV 114
Score = 36.3 bits (83), Expect = 4e-04
Identities = 11/61 (18%), Positives = 16/61 (26%), Gaps = 6/61 (9%)
Query: 58 KYMELSVSVSDRRLMETRGNKHT------LTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
K++EL R + N + L I V D G Y +
Sbjct: 53 KWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNI 112
Query: 112 S 112
Sbjct: 113 D 113
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 39.0 bits (90), Expect = 1e-04
Identities = 9/51 (17%), Positives = 19/51 (37%)
Query: 6 WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 56
W Q + + + + ++ +R + + N D G Y C+ G
Sbjct: 199 WLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVG 249
Score = 37.5 bits (86), Expect = 4e-04
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 105
+ ++ +R + + N D G Y C+ G
Sbjct: 211 KEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVG 249
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 38.6 bits (89), Expect = 1e-04
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 17 VSDRRLMETRGNKHTLTIKNVQSTDFGNYSC-VADNNLGRAKKYMELSVSV 66
R ++ L + Q D +Y C V G A+ L+V
Sbjct: 64 TRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFA 114
Score = 35.2 bits (80), Expect = 0.002
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 66 VSDRRLMETRGNKHTLTIKNVQSTDFGNYSC-VADNNLGRAKKYMELS 112
R ++ L + Q D +Y C V G A+ L+
Sbjct: 64 TRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLN 111
Score = 30.5 bits (68), Expect = 0.078
Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 11/73 (15%)
Query: 5 SWYQDTFLIEPSVSDR-------RLMETRGNKHT----LTIKNVQSTDFGNYSCVADNNL 53
+WY++ +E V R + + L ++ + ++ C A +L
Sbjct: 153 TWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSL 212
Query: 54 GRAKKYMELSVSV 66
+ S +
Sbjct: 213 PEGRHGRLDSPTF 225
Score = 26.7 bits (58), Expect = 1.9
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSE 113
TL ++ + ++ C A +L + S
Sbjct: 190 TLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSP 223
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 38.4 bits (89), Expect = 1e-04
Identities = 18/132 (13%), Positives = 34/132 (25%), Gaps = 48/132 (36%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRR------LMETRGNKHTLT-- 82
L I +V+ D G Y C+ + G K + + V+ + +++ ++H LT
Sbjct: 81 ALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQ 139
Query: 83 ---------------------------------------IKNVQSTDFGNYSCVADNNLG 103
+ +T + C
Sbjct: 140 AEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDP 199
Query: 104 RAKKYMELSELE 115
EL E
Sbjct: 200 EENHTAELVIPE 211
Score = 37.3 bits (86), Expect = 3e-04
Identities = 5/62 (8%), Positives = 15/62 (24%), Gaps = 1/62 (1%)
Query: 4 MSWYQDTFLIEPSVSDRRLMET-RGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 62
+ W + + + + + + +T + C EL
Sbjct: 148 VIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAEL 207
Query: 63 SV 64
+
Sbjct: 208 VI 209
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 38.0 bits (88), Expect = 1e-04
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVS 67
L I+NV+ +D G Y+C ++ + + +EL V
Sbjct: 86 ALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDP 122
Score = 34.1 bits (78), Expect = 0.003
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
L I+NV+ +D G Y+C ++ + + +EL
Sbjct: 86 ALRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL 117
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 37.5 bits (87), Expect = 1e-04
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV 66
++ + N+Q +D G Y C G A K + L V V
Sbjct: 90 SINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 125
Score = 33.7 bits (77), Expect = 0.003
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 111
++ + N+Q +D G Y C G A K + L
Sbjct: 90 SINVTNLQLSDIGTYQCKVKKAPGVANKKIHL 121
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 37.3 bits (86), Expect = 2e-04
Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 15 PSVSDRR--LMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVS 67
P + + + L+ N+ ++T+ NV D G Y C+ ++ K+ +++ V +
Sbjct: 49 PVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKE-VKVIVLAT 102
Score = 35.7 bits (82), Expect = 7e-04
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 64 VSVSDRR--LMETRGNKHTLTIKNVQSTDFGNYSCVADNN 101
+ + + L+ N+ ++T+ NV D G Y C+ ++
Sbjct: 49 PVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSD 88
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell
adhesion protein, immunoglobulin fold, I-SET fold, cell
adhesion glycoprotein; 1.9A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Length = 210
Score = 38.0 bits (87), Expect = 2e-04
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 14 EPSVSDRRL------METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SV R L +++ + LT++N + G CV + ++L V
Sbjct: 37 GASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93
Score = 33.0 bits (74), Expect = 0.011
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 72 METRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+++ + LT++N + G CV + ++L
Sbjct: 52 VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLL 92
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 36.5 bits (84), Expect = 3e-04
Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 6 WYQDTFLIEPS--------VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL 53
W+ + ++ + + R +E +G +H L + V+ D G + +
Sbjct: 40 WFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGV 95
Score = 35.0 bits (80), Expect = 0.001
Identities = 8/48 (16%), Positives = 19/48 (39%)
Query: 55 RAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL 102
++ + + R +E +G +H L + V+ D G + +
Sbjct: 48 KSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGV 95
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 37.5 bits (86), Expect = 3e-04
Identities = 12/49 (24%), Positives = 15/49 (30%), Gaps = 5/49 (10%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL 53
W S G L +++VQ D GNYSC
Sbjct: 40 HWVLRKPAAGSHPS-----RWAGMGRRLLLRSVQLHDSGNYSCYRAGRP 83
Score = 36.8 bits (84), Expect = 6e-04
Identities = 13/57 (22%), Positives = 19/57 (33%)
Query: 46 SCVADNNLGRAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNL 102
+C A + L + G L +++VQ D GNYSC
Sbjct: 27 TCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRP 83
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 36.3 bits (84), Expect = 4e-04
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 15 PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSC-VADNNLGRAKKYMELSVSV 66
RL N +L + ++ D GNY+C G + L V
Sbjct: 65 LEFVAARLGAELRN-ASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLA 116
Score = 32.9 bits (75), Expect = 0.007
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 64 VSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSC-VADNNLGRAKKYMELS 112
+ RL N +L + ++ D GNY+C G + L
Sbjct: 65 LEFVAARLGAELRN-ASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLR 113
>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1,
CD172B antigen, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 136
Score = 36.0 bits (84), Expect = 5e-04
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 12/59 (20%)
Query: 2 GMMSWYQDT----FLI------EPSVSDRRLMETRGN--KHTLTIKNVQSTDFGNYSCV 48
G + W++ LI T+ N +++I N+ D G Y CV
Sbjct: 39 GPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCV 97
Score = 32.6 bits (75), Expect = 0.010
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 80 TLTIKNVQSTDFGNYSCV 97
+++I N+ D G Y CV
Sbjct: 80 SISISNITPADAGTYYCV 97
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 37.1 bits (84), Expect = 5e-04
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W +++ LM + L I N+ D G Y C+++ + K ++
Sbjct: 565 FWKFQNGVLKAESPKYGLMGRKN----LLIFNLSEGDSGVYQCLSEER-VKNKTVFQVVA 619
Query: 65 SVSDRRLMETR 75
+ +
Sbjct: 620 KHVLEVKVVPK 630
Score = 32.0 bits (71), Expect = 0.034
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN 101
S + + R N L I N+ D G Y C+++
Sbjct: 577 SPKYGLMGRKN---LLIFNLSEGDSGVYQCLSEER 608
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 36.8 bits (85), Expect = 5e-04
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 15/67 (22%)
Query: 4 MSWYQDT------FLI---------EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCV 48
MSWYQ +L S+ + TR L ++ + C
Sbjct: 33 MSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGRTLYCT 92
Query: 49 ADNNLGR 55
+ +
Sbjct: 93 SSADHWT 99
Score = 34.1 bits (78), Expect = 0.005
Identities = 5/40 (12%), Positives = 12/40 (30%)
Query: 65 SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR 104
S+ + TR L ++ + C + +
Sbjct: 60 SLPGADYLATRVTDTELRLQVANMSQGRTLYCTSSADHWT 99
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 36.5 bits (84), Expect = 7e-04
Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 37/110 (33%)
Query: 28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL------------------------- 62
++L + N++ D G+Y L
Sbjct: 68 QSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCEL 127
Query: 63 -----------SVSVSDRRLMETRGNKHTLTIKNV-QSTDFGNYSCVADN 100
+VS L T ++ LT+ + + +Y+C+A+N
Sbjct: 128 HLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRISSEQDYTCIAEN 177
Score = 31.5 bits (71), Expect = 0.031
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 77 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
++L + N++ D G+Y L L
Sbjct: 68 QSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILR 106
Score = 28.0 bits (62), Expect = 0.65
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 15 PSVSDRRLMETRGNKHTLTIKNV-QSTDFGNYSCVADN 51
S L T ++ LT+ + + +Y+C+A+N
Sbjct: 140 VSFRWEALGNTLSSQPNLTVSWDPRISSEQDYTCIAEN 177
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus}
PDB: 3kho_A*
Length = 133
Score = 35.8 bits (83), Expect = 7e-04
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 12/52 (23%)
Query: 4 MSWYQD------TFLI-EPSVSDRRLMETR-GNKHTLTIKNVQSTDFGNYSC 47
++W++ L+ E R+++T+ G+ +TLTI+N+Q D G Y C
Sbjct: 47 LTWFRKRGSQQPQELVSEEG----RIVQTQNGSVYTLTIQNIQYEDNGIYFC 94
Score = 33.5 bits (77), Expect = 0.005
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
G+ +TLTI+N+Q D G Y C
Sbjct: 74 GSVYTLTIQNIQYEDNGIYFC 94
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 36.4 bits (84), Expect = 8e-04
Identities = 11/98 (11%), Positives = 28/98 (28%), Gaps = 9/98 (9%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLT--IKNVQSTDFGNYSCVADNNLGRAKKYMEL 62
S F+ P D + G +T + ++ D ++ +
Sbjct: 13 SEVSSVFIFPPKTKD---VLGGGLTPKVTCVVVDISQNDPEVRFSWFIDD----VEVHTA 65
Query: 63 SVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN 100
+++ T + L I + + C ++
Sbjct: 66 QTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNS 103
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.001
Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 41/147 (27%)
Query: 2 GMM----SWYQDTFLIEPSVSDRRLMETRGNK-HTLTIKNVQSTDF-------------G 43
G++ +W + ++ K L +KN S +
Sbjct: 157 GVLGSGKTW-----VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 44 NYSCVADNNLGRAKKYMELSVSVSDRRLMETRGNKHTLTI-KNVQSTD----FGNYSC-- 96
N++ +D+ K S+ RRL++++ ++ L + NVQ+ F N SC
Sbjct: 212 NWTSRSDH--SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-NLSCKI 268
Query: 97 --------VADNNLGRAKKYMELSELE 115
V D ++ L
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHS 295
Score = 28.7 bits (63), Expect = 0.41
Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 33/118 (27%)
Query: 6 W----YQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 61
W D ++ + L+E + + T++I S Y+E
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI----------PSI-----------YLE 434
Query: 62 LSVSVSDRRLMETRGNKHTLTIKNVQSTDFG-----NYSCVADNNLGRAKKYMELSEL 114
L V + + + H K S D Y +++G K +E E
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY---SHIGHHLKNIEHPER 489
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 35.3 bits (81), Expect = 0.001
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 13 IEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSC-VADNNLGRAKKYMELSVSVS 67
I PS DR G LT++++ D G Y C G + L V S
Sbjct: 57 ISPSFKDRV---APGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLES 109
Score = 31.0 bits (70), Expect = 0.033
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 80 TLTIKNVQSTDFGNYSC-VADNNLGRAKKYMELS 112
LT++++ D G Y C G + L
Sbjct: 72 GLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLE 105
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment,
immune system; HET: PG4; 1.60A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L*
1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L*
1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K*
1mfe_L* 1mfb_L* ...
Length = 212
Score = 35.7 bits (83), Expect = 0.001
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 12/56 (21%)
Query: 4 MSWYQD------TFLI-----EPS-VSDRRLMETRGNKHTLTIKNVQSTDFGNYSC 47
+W Q+ T LI V R G+K LTI Q+ D Y C
Sbjct: 35 ANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFC 90
Score = 33.8 bits (78), Expect = 0.006
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
G+K LTI Q+ D Y C
Sbjct: 70 GDKAALTITGAQTEDEAIYFC 90
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 35.1 bits (81), Expect = 0.001
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 15/69 (21%)
Query: 4 MSWYQ------DTFLI-------EPSVSDRRLMETRGNKH--TLTIKNVQSTDFGNYSCV 48
++W + +P R + N+H + I + + D G Y C
Sbjct: 42 LNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCG 101
Query: 49 ADNNLGRAK 57
A + +AK
Sbjct: 102 AISLHPKAK 110
Score = 32.8 bits (75), Expect = 0.010
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 63 SVSVSDRRLMETR---GNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
S V D R + + + I + + D G Y C A + +AK
Sbjct: 64 SQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKAK 110
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 34.9 bits (80), Expect = 0.001
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 31 TLTIKNVQSTDFGNYSC-----VADNNLGRAKKYMELSV 64
+L I +Q D +Y+C D N K +EL V
Sbjct: 79 SLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRV 117
Score = 32.2 bits (73), Expect = 0.013
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 80 TLTIKNVQSTDFGNYSC-----VADNNLGRAKKYMEL 111
+L I +Q D +Y+C D N K +EL
Sbjct: 79 SLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIEL 115
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 34.5 bits (79), Expect = 0.002
Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 15 PSVSDRR--LMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV 66
++ D R L+ ++ ++++ +V +D G Y+C + L+V
Sbjct: 54 KALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLG 106
Score = 32.9 bits (75), Expect = 0.006
Identities = 8/35 (22%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 64 VSVSDRR--LMETRGNKHTLTIKNVQSTDFGNYSC 96
++ D R L+ ++ ++++ +V +D G Y+C
Sbjct: 54 KALRDNRIELVRASWHELSISVSDVSLSDEGQYTC 88
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 35.1 bits (80), Expect = 0.002
Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Query: 28 NKHTLTIKNVQSTDFGNYSC-VADNNLGRAKKYMELSV------SVSDRRLMETRGNKHT 80
+L + ++ D G+Y+C G + L V + +++ T
Sbjct: 76 RDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPM 135
Query: 81 LT 82
Sbjct: 136 AR 137
Score = 33.1 bits (75), Expect = 0.011
Identities = 6/63 (9%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGN-KHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
+W+ D + + + + D +C ++ + + +S
Sbjct: 150 TWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVS 209
Query: 64 VSV 66
++V
Sbjct: 210 LTV 212
Score = 31.2 bits (70), Expect = 0.051
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 77 NKHTLTIKNVQSTDFGNYSC-VADNNLGRAKKYMELS 112
+L + ++ D G+Y+C G + L
Sbjct: 76 RDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLR 112
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 35.0 bits (80), Expect = 0.002
Identities = 10/63 (15%), Positives = 22/63 (34%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
++ D + + +L + +Q + G Y C +A+ ++L V
Sbjct: 57 EFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEV 116
Query: 65 SVS 67
S
Sbjct: 117 VAS 119
Score = 31.2 bits (70), Expect = 0.053
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+L + +Q + G Y C +A+ ++L
Sbjct: 83 SLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLE 115
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 34.7 bits (80), Expect = 0.002
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 12/56 (21%)
Query: 4 MSWYQD------TFLI-----EPS-VSDRRLMETRGNKHTLTIKNVQSTDFGNYSC 47
+SWYQ +I PS V DR GN +LT+ +Q+ D Y C
Sbjct: 30 VSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYC 85
Score = 32.4 bits (74), Expect = 0.015
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
GN +LT+ +Q+ D Y C
Sbjct: 65 GNTASLTVSGLQTDDEAVYYC 85
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 34.2 bits (78), Expect = 0.003
Identities = 8/39 (20%), Positives = 20/39 (51%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDR 69
++ I N+ +D G ++C N K ++++ V ++
Sbjct: 82 SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEK 120
Score = 31.1 bits (70), Expect = 0.036
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 80 TLTIKNVQSTDFGNYSCVADN 100
++ I N+ +D G ++C N
Sbjct: 82 SIVIHNLDYSDNGTFTCDVKN 102
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 34.4 bits (78), Expect = 0.004
Identities = 11/94 (11%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Query: 7 YQDTFLIEPSVSDRRLM--ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
++P R + + + +L+I + + D G+Y + Y + +
Sbjct: 57 NNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKL 116
Query: 65 SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVA 98
++ + ++ ++S SC
Sbjct: 117 NL---EVTALIEKPDIHFLEPLESGRPTRLSCSL 147
Score = 33.7 bits (76), Expect = 0.006
Identities = 6/40 (15%), Positives = 12/40 (30%)
Query: 28 NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVS 67
LT+ N +C + + ++VS
Sbjct: 175 RSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNVS 214
Score = 29.4 bits (65), Expect = 0.18
Identities = 6/38 (15%), Positives = 15/38 (39%)
Query: 73 ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 110
+ + +L+I + + D G+Y + Y +
Sbjct: 76 DVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQ 113
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 33.8 bits (77), Expect = 0.004
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 12 LIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSC-VADNNLGRAKKYMELSV 64
+ S + E TL + + D GNY+C A G + L V
Sbjct: 75 FVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
Score = 30.7 bits (69), Expect = 0.050
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 62 LSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSC 96
+S S + E TL + + D GNY+C
Sbjct: 76 VSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTC 110
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 34.2 bits (78), Expect = 0.004
Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 13 IEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA-KKYMELSVSVSDRRL 71
I P +R + + N ++ I ++ +D G Y CV A K+ V++S
Sbjct: 49 IWPEYKNRTIFDITNNL-SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLS---- 103
Query: 72 METRGNKHTLTIKNVQSTDFGNYSCVADN 100
++ +++ + +++ C
Sbjct: 104 VKADFPTPSISDFEIPTSNIRRIICSTSG 132
Score = 31.5 bits (71), Expect = 0.037
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 65 SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
+R + + N ++ I ++ +D G Y CV A K L+E+
Sbjct: 52 EYKNRTIFDITNNL-SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVT 101
Score = 26.5 bits (58), Expect = 2.0
Identities = 5/62 (8%), Positives = 18/62 (29%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
+SW ++ + + + + T ++ C+ R + +
Sbjct: 139 LSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNWN 198
Query: 64 VS 65
+
Sbjct: 199 TA 200
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 33.9 bits (77), Expect = 0.005
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 63
++ + + RG T T+ + N+SC A+ +L L
Sbjct: 124 LTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRPHGL--GLF 181
Query: 64 VSVSDRRLMET 74
+ S R + T
Sbjct: 182 ENSSAPRELRT 192
Score = 27.0 bits (59), Expect = 1.3
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 61 ELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG 103
EL RG T T+ + N+SC A+ +L
Sbjct: 132 ELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLR 174
Score = 25.0 bits (54), Expect = 6.1
Identities = 5/59 (8%), Positives = 15/59 (25%), Gaps = 8/59 (13%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL-------SVSVSDRRLMETRGNKHTLT 82
+ +++ + C + + V + + G TL+
Sbjct: 53 ARQLVDIREPE-TQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLS 110
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo
sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A*
2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L
2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L*
3qeg_L ...
Length = 216
Score = 33.8 bits (78), Expect = 0.005
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 12/56 (21%)
Query: 4 MSWYQD------TFLI-----EPS-VSDRRLMETRGNKHTLTIKNVQSTDFGNYSC 47
+SWYQ LI PS + DR G TL I +Q+ D +Y C
Sbjct: 34 VSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYC 89
Score = 32.2 bits (74), Expect = 0.021
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
G TL I +Q+ D +Y C
Sbjct: 69 GTSATLGITGLQTGDEADYYC 89
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 34.0 bits (78), Expect = 0.005
Identities = 8/43 (18%), Positives = 15/43 (34%)
Query: 59 YMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN 101
Y E + R+ + K I ++ G Y C ++
Sbjct: 38 YREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSD 80
Score = 32.9 bits (75), Expect = 0.010
Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 6 WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN 52
Y++ + + R+ + K I ++ G Y C ++
Sbjct: 37 LYREK---KTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSD 80
Score = 29.4 bits (66), Expect = 0.19
Identities = 5/48 (10%), Positives = 14/48 (29%)
Query: 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVA 49
++ P + + ++ ++ V + Y C A
Sbjct: 129 DGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYA 176
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 33.5 bits (77), Expect = 0.005
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 27 GNKHTLTIKNVQSTDFGNYSC 47
+ TLTI+ ++ D G Y C
Sbjct: 77 ESLATLTIQGIRFEDNGIYFC 97
Score = 33.5 bits (77), Expect = 0.005
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
+ TLTI+ ++ D G Y C
Sbjct: 77 ESLATLTIQGIRFEDNGIYFC 97
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.005
Identities = 31/181 (17%), Positives = 45/181 (24%), Gaps = 96/181 (53%)
Query: 2 GM-MSWYQDTFLIEPSV------SDRRLMETRG---------NKHTLTIKNVQSTDFG-- 43
GM M Y T + +D +T G N LTI FG
Sbjct: 1630 GMGMDLY-KTS---KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH------FGGE 1679
Query: 44 -------NYS--CVADNNLGRAK-------------KYM------ELS-----------V 64
NYS G+ K Y LS +
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 65 SVSDRRLMETRGNK--------HTLTIKNVQSTDFGNYS---CVADNNLGRAKKYMELSE 113
+ ++++G H+L G Y+ +AD M +
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSL----------GEYAALASLAD--------VMSIES 1781
Query: 114 L 114
L
Sbjct: 1782 L 1782
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 33.2 bits (75), Expect = 0.006
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 2 GMMSWYQD-----TFLIEPSVSDRR--LMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG 54
+ W F + ++ D R L+ + ++ +++I NV D G Y+C +
Sbjct: 68 SSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSI-FTMP 126
Query: 55 RAKKYMELSVSV 66
++V
Sbjct: 127 VRTAKSLVTVLG 138
Score = 31.3 bits (70), Expect = 0.035
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 70 RLMETRGNKHTLTIKNVQSTDFGNYSCVA 98
+L+ + ++ +++I NV D G Y+C
Sbjct: 94 QLVTSTPHELSISISNVALADEGEYTCSI 122
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 32.7 bits (75), Expect = 0.008
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 15/70 (21%)
Query: 3 MMSWYQ-------DTFLI------EPSVSDRRLMETRGNKH--TLTIKNVQSTDFGNYSC 47
M++W + + +P R + N+H + I + + D G Y C
Sbjct: 31 MLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLC 90
Query: 48 VADNNLGRAK 57
A + + K
Sbjct: 91 GAISLHPKLK 100
Score = 32.0 bits (73), Expect = 0.013
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAK 106
+ I + + D G Y C A + + K
Sbjct: 74 HMNILDTRRNDSGIYLCGAISLHPKLK 100
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 32.4 bits (74), Expect = 0.009
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 12/58 (20%)
Query: 4 MSWYQ------DTFLIEPSVSDRRLMETR--GNKH-TLTIKNVQSTDFGNYSCVADNN 52
WY+ + I S+ R +ET G+K +L I +++ D G Y C A
Sbjct: 34 TGWYRTKLGSTNEQSI--SIGGR-YVETVNKGSKSFSLRISDLRVEDSGTYKCQAFYV 88
Score = 32.1 bits (73), Expect = 0.017
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 58 KYMELSVSVSDRRLMETR--GNKH-TLTIKNVQSTDFGNYSCVADNN 101
E S+S+ R +ET G+K +L I +++ D G Y C A
Sbjct: 43 STNEQSISIGGR-YVETVNKGSKSFSLRISDLRVEDSGTYKCQAFYV 88
>2otu_A FV light chain variable domain; antibody FV polyglutamine complex,
immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A
Length = 115
Score = 32.1 bits (74), Expect = 0.011
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 27 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY 59
G L+I N+Q D Y C + + Y
Sbjct: 73 GADRYLSISNIQPEDEAIYICGVGDTIKEQFVY 105
Score = 32.1 bits (74), Expect = 0.011
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY 108
G L+I N+Q D Y C + + Y
Sbjct: 73 GADRYLSISNIQPEDEAIYICGVGDTIKEQFVY 105
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2,
immune system; 2.10A {Orectolobus maculatus}
Length = 108
Score = 31.9 bits (73), Expect = 0.012
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 4 MSWYQ------DTFLIEPSVSDRRL--METRGNKHTLTIKNVQSTDFGNYSC 47
+WY+ I S+ R ++ N +LTI++++ D G Y C
Sbjct: 34 TNWYRTKLGSTKEQTI--SIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKC 83
Score = 29.6 bits (67), Expect = 0.094
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 61 ELSVSVSDRRL--METRGNKHTLTIKNVQSTDFGNYSC 96
E ++S+ R ++ N +LTI++++ D G Y C
Sbjct: 46 EQTISIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKC 83
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 32.2 bits (73), Expect = 0.014
Identities = 12/65 (18%), Positives = 18/65 (27%), Gaps = 2/65 (3%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
W S R+ L I VQ D Y G ++ ++ +
Sbjct: 49 EWDSRKSKYFESKFKGRV-RLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQE-WKIKL 106
Query: 65 SVSDR 69
V D
Sbjct: 107 QVLDP 111
Score = 29.9 bits (67), Expect = 0.093
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKK 107
L I VQ D Y G ++
Sbjct: 74 ALYISKVQKEDNSTYIMRVLKKTGNEQE 101
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme,
antigen, allergen, antimic bacteriolytic enzyme,
glycosidase, hydrolase; 1.20A {Mus musculus} PDB:
3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A
1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L
1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Length = 213
Score = 32.6 bits (75), Expect = 0.014
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 27 GNKHTLTIKNVQSTDFGNYSC 47
G TL+I +V++ DFG Y C
Sbjct: 68 GTDFTLSINSVETEDFGMYFC 88
Score = 32.6 bits (75), Expect = 0.014
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
G TL+I +V++ DFG Y C
Sbjct: 68 GTDFTLSINSVETEDFGMYFC 88
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 32.1 bits (73), Expect = 0.014
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 7 YQDTFLIEPSVSDR-RLMETRGNKH-TLTIKNVQSTDFGNYSCVADNNLGRAKKYME--- 61
D L++ R LM +K L +K+++ D G Y+ + + ++++
Sbjct: 54 SGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEI--SDSNRWLDVKG 111
Query: 62 LSVSVSD 68
+V+V+
Sbjct: 112 TTVTVTT 118
Score = 27.5 bits (61), Expect = 0.70
Identities = 5/30 (16%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYM 109
L +K+++ D G Y+ + + +++
Sbjct: 80 NLLLKDLKPEDSGTYNFRFEI--SDSNRWL 107
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 32.7 bits (75), Expect = 0.014
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 16/68 (23%)
Query: 4 MSWYQDT------FLI----------EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSC 47
+ WYQ +++ + DR + G L+I N+Q D Y C
Sbjct: 33 IEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEAIYIC 92
Query: 48 VADNNLGR 55
+ +
Sbjct: 93 GVGDTIKE 100
Score = 31.5 bits (72), Expect = 0.036
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVADNNLGR 104
G L+I N+Q D Y C + +
Sbjct: 72 GADRYLSISNIQPEDEAIYICGVGDTIKE 100
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 33.1 bits (74), Expect = 0.014
Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 6/88 (6%)
Query: 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYME 61
G M Q+ + + D T + VQ G Y + + +E
Sbjct: 226 GQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLE 285
Query: 62 L------SVSVSDRRLMETRGNKHTLTI 83
L VS+ L + +
Sbjct: 286 LAVYKPPKVSLMPATLARAAPGEAPPEL 313
Score = 28.4 bits (62), Expect = 0.54
Identities = 8/52 (15%), Positives = 14/52 (26%)
Query: 61 ELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
+ D T + VQ G Y + + +EL+
Sbjct: 236 VAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELA 287
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A
{Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A
1c5d_L 1bfo_A 3b9k_L*
Length = 210
Score = 32.6 bits (75), Expect = 0.015
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 27 GNKHTLTIKNVQSTDFGNYSCVADNN 52
G TLTI V++ D Y C N
Sbjct: 67 GTDFTLTIDPVEADDTAIYFCQQSWN 92
Score = 32.6 bits (75), Expect = 0.015
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVADNN 101
G TLTI V++ D Y C N
Sbjct: 67 GTDFTLTIDPVEADDTAIYFCQQSWN 92
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 32.5 bits (74), Expect = 0.015
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG 54
+++ +PS ++ +K +I + G Y C
Sbjct: 150 FLHKEGISKDPSRLVGQI-HDGVSKANFSIGPMMLALAGTYRCYGSVTHT 198
Score = 29.1 bits (65), Expect = 0.25
Identities = 9/60 (15%), Positives = 16/60 (26%), Gaps = 2/60 (3%)
Query: 46 SCVADNNLGRAKKYMELSVSVSDRRLMETR--GNKHTLTIKNVQSTDFGNYSCVADNNLG 103
C +D + E R + + +K +I + G Y C
Sbjct: 139 QCWSDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHT 198
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 32.4 bits (74), Expect = 0.016
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 27 GNKHTLTIKNVQSTDFGNYSC 47
GN TLTI Q+ D +Y C
Sbjct: 67 GNMATLTISKAQAGDEADYYC 87
Score = 32.4 bits (74), Expect = 0.016
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
GN TLTI Q+ D +Y C
Sbjct: 67 GNMATLTISKAQAGDEADYYC 87
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 32.7 bits (73), Expect = 0.016
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSV 64
SW + + + L I+N+ + +G+Y C A ++ +
Sbjct: 532 SWRHKENVEQSCEPGHQSPN-----CILFIENLTAQQYGHYFCEAQEG-SYFREAQHWQL 585
Query: 65 SVSD 68
D
Sbjct: 586 LPED 589
Score = 32.7 bits (73), Expect = 0.018
Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 7/100 (7%)
Query: 3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK-KYME 61
S Q I P+ + + +K L ++ SC ++ ++ E
Sbjct: 481 ERSVLQS---INPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPMESRHATYSWRHKE 537
Query: 62 LSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN 101
+ L I+N+ + +G+Y C A
Sbjct: 538 NVEQSCEPGHQSPNC---ILFIENLTAQQYGHYFCEAQEG 574
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 32.2 bits (74), Expect = 0.019
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 27 GNKHTLTIKNVQSTDFGNYSC 47
G TLTI +++ D Y C
Sbjct: 68 GTDFTLTISDLECADAATYYC 88
Score = 32.2 bits (74), Expect = 0.019
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
G TLTI +++ D Y C
Sbjct: 68 GTDFTLTISDLECADAATYYC 88
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus
musculus}
Length = 233
Score = 32.2 bits (74), Expect = 0.019
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 27 GNKHTLTIKNVQSTDFGNYSC 47
G TI+N+ S D +Y C
Sbjct: 90 GTDFVFTIENMLSEDVADYYC 110
Score = 32.2 bits (74), Expect = 0.019
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
G TI+N+ S D +Y C
Sbjct: 90 GTDFVFTIENMLSEDVADYYC 110
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;
anti-CD3epsilon, T-cell receptor, signalling, IMMU;
2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B
3ldb_B*
Length = 213
Score = 32.2 bits (74), Expect = 0.019
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 27 GNKHTLTIKNVQSTDFGNYSC 47
G + TI +++S D G+Y C
Sbjct: 68 GRDSSFTISSLESEDIGSYYC 88
Score = 32.2 bits (74), Expect = 0.019
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
G + TI +++S D G+Y C
Sbjct: 68 GRDSSFTISSLESEDIGSYYC 88
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex
(immunorece immunoglobulin) complex; HET: NAG NDG;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 212
Score = 32.3 bits (74), Expect = 0.019
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 27 GNKHTLTIKNVQSTDFGNYSC 47
G TLTI Q D Y C
Sbjct: 66 GTTATLTISGAQPEDEAAYYC 86
Score = 32.3 bits (74), Expect = 0.019
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
G TLTI Q D Y C
Sbjct: 66 GTTATLTISGAQPEDEAAYYC 86
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 32.4 bits (74), Expect = 0.019
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 27 GNKHTLTIKNVQSTDFGNYSC 47
G TL I V++ D G Y C
Sbjct: 106 GTDFTLRISRVEAEDLGVYYC 126
Score = 32.4 bits (74), Expect = 0.019
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
G TL I V++ D G Y C
Sbjct: 106 GTDFTLRISRVEAEDLGVYYC 126
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 32.1 bits (73), Expect = 0.020
Identities = 22/139 (15%), Positives = 34/139 (24%), Gaps = 43/139 (30%)
Query: 6 WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK------- 58
YQ F DR R NK I ++ S G YSC+ ++
Sbjct: 33 EYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLV 92
Query: 59 ----YMELSVSVSDRRLMETRGN--------------------------------KHTLT 82
Y ++SV + + +
Sbjct: 93 VTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFP 152
Query: 83 IKNVQSTDFGNYSCVADNN 101
+ V + G Y C N
Sbjct: 153 LGPVTTAHRGTYRCFGSYN 171
Score = 30.9 bits (70), Expect = 0.046
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 59 YMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG 103
+ E S+ DR R NK I ++ S G YSC+
Sbjct: 37 HFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL 81
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 32.1 bits (73), Expect = 0.020
Identities = 18/139 (12%), Positives = 37/139 (26%), Gaps = 51/139 (36%)
Query: 6 WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK------- 58
++ P+ DR+ NK +I ++ G Y C + +G ++
Sbjct: 37 LDKE---ESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELV 93
Query: 59 ----YMELSVSVSDRRLMETRGN------------------------------------- 77
Y + ++S L+ + +
Sbjct: 94 MTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSPMDTFLLCKERAAHPLLCLRSEHGAQQH 153
Query: 78 KHTLTIKNVQSTDFGNYSC 96
+ + V S G Y C
Sbjct: 154 QAEFPMSPVTSVHGGTYRC 172
Score = 31.7 bits (72), Expect = 0.025
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 59 YMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG 103
E S + DR+ NK +I ++ G Y C + +G
Sbjct: 38 DKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVG 82
Score = 25.2 bits (55), Expect = 4.7
Identities = 5/46 (10%), Positives = 11/46 (23%), Gaps = 1/46 (2%)
Query: 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSC 47
++ + ++ + V S G Y C
Sbjct: 128 DTFLLCKERAAHPLLCLRSEHG-AQQHQAEFPMSPVTSVHGGTYRC 172
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain,
immunoglobulin superfamily, immune system,
transmembrane, paired receptor; 1.19A {Homo sapiens}
PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Length = 127
Score = 31.6 bits (72), Expect = 0.021
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 31 TLTIKNVQSTDFGNYSCV 48
+++I N+ D G Y CV
Sbjct: 75 SISISNITPADAGTYYCV 92
Score = 31.6 bits (72), Expect = 0.021
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 80 TLTIKNVQSTDFGNYSCV 97
+++I N+ D G Y CV
Sbjct: 75 SISISNITPADAGTYYCV 92
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 32.2 bits (73), Expect = 0.021
Identities = 22/139 (15%), Positives = 34/139 (24%), Gaps = 43/139 (30%)
Query: 6 WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK------- 58
YQ F DR R NK I ++ S G YSC+ ++
Sbjct: 36 EYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLV 95
Query: 59 ----YMELSVSVSDRRLMETRGN--------------------------------KHTLT 82
Y ++SV + + +
Sbjct: 96 VTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFP 155
Query: 83 IKNVQSTDFGNYSCVADNN 101
+ V + G Y C N
Sbjct: 156 LGPVTTAHRGTYRCFGSYN 174
Score = 26.0 bits (57), Expect = 3.4
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 1/39 (2%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYME-LSVSVSD 68
+ V + G Y C N E + + V+
Sbjct: 153 EFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG 191
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 32.3 bits (73), Expect = 0.021
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 16/60 (26%)
Query: 4 MSWYQDT------FLI---------EPSVSDRRLMETRGNKH-TLTIKNVQSTDFGNYSC 47
+ WYQ T FLI + + R ++ + H + + ++ D Y C
Sbjct: 33 VVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYFC 92
Score = 26.9 bits (59), Expect = 1.5
Identities = 5/33 (15%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 65 SVSDRRLMETRGNKH-TLTIKNVQSTDFGNYSC 96
+ R ++ + H + + ++ D Y C
Sbjct: 60 FLPSRFSVQQFDDYHSEMNMSALELEDSAMYFC 92
>3sob_L Antibody light chain; beta propeller, protein binding-immune system
complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Length = 237
Score = 32.2 bits (74), Expect = 0.023
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 27 GNKHTLTIKNVQSTDFGNYSC 47
G TLTI ++Q DF Y C
Sbjct: 91 GTDFTLTISSLQPEDFATYYC 111
Score = 32.2 bits (74), Expect = 0.023
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
G TLTI ++Q DF Y C
Sbjct: 91 GTDFTLTISSLQPEDFATYYC 111
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1;
beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus
musculus}
Length = 120
Score = 31.5 bits (72), Expect = 0.025
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 31 TLTIKNVQSTDFGNYSCV 48
++ I NV D G Y CV
Sbjct: 79 SIRISNVTPEDAGTYYCV 96
Score = 31.5 bits (72), Expect = 0.025
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 80 TLTIKNVQSTDFGNYSCV 97
++ I NV D G Y CV
Sbjct: 79 SIRISNVTPEDAGTYYCV 96
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed
death-1, costimulatory, immune system; 2.10A {Homo
sapiens}
Length = 129
Score = 31.5 bits (72), Expect = 0.026
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 31 TLTIKNVQSTDFGNYSCVADNN 52
+++ + D G Y C A +
Sbjct: 76 HMSVVRARRNDSGTYLCGAISL 97
Score = 31.5 bits (72), Expect = 0.026
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 80 TLTIKNVQSTDFGNYSCVADNN 101
+++ + D G Y C A +
Sbjct: 76 HMSVVRARRNDSGTYLCGAISL 97
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 32.1 bits (73), Expect = 0.028
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 27 GNKHTLTIKNVQSTDFGNYSC 47
G TL I V++ D G Y C
Sbjct: 110 GTDFTLKISRVEAEDLGIYYC 130
Score = 32.1 bits (73), Expect = 0.028
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
G TL I V++ D G Y C
Sbjct: 110 GTDFTLKISRVEAEDLGIYYC 130
Score = 27.8 bits (62), Expect = 0.67
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKH-----TLTIKNVQSTDFGNYSC 47
+ W D + V + + + TLT+ + +Y+C
Sbjct: 188 VKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTC 236
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human
cytomegalovirus, PP65, T cell receptor (TCR), immune
response, public response; 2.80A {Homo sapiens}
Length = 199
Score = 31.8 bits (72), Expect = 0.029
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 14/63 (22%)
Query: 4 MSWY-QD-----TFLI-----EPSVSDRRL---METRGNKHTLTIKNVQSTDFGNYSCVA 49
+ WY + L R+ + T+ L IK Q D Y C
Sbjct: 32 LHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSYLYIKGSQPEDSATYLCAR 91
Query: 50 DNN 52
+
Sbjct: 92 NTG 94
Score = 28.4 bits (63), Expect = 0.40
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 80 TLTIKNVQSTDFGNYSCVADNN 101
L IK Q D Y C +
Sbjct: 73 YLYIKGSQPEDSATYLCARNTG 94
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen,
beta-turn, immune system; HET: NLE; NMR {Rattus
norvegicus} SCOP: b.1.1.1 b.1.1.1
Length = 257
Score = 31.6 bits (72), Expect = 0.029
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 12/56 (21%)
Query: 4 MSWYQDT------FLI------EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSC 47
++WYQ LI + + R G +TLTI ++Q D Y C
Sbjct: 171 LAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFC 226
Score = 30.5 bits (69), Expect = 0.078
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
G +TLTI ++Q D Y C
Sbjct: 206 GTDYTLTISSLQPEDVATYFC 226
Score = 28.9 bits (65), Expect = 0.26
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 1 MGMMSWYQDTFLIEPSVSDRRLM--ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK 58
MG M + T ++ R + +T N+ L + ++Q+ D G Y C D G
Sbjct: 48 MGRMWYDGYTAY-NSALKSRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLYGGYPLG 106
Query: 59 Y 59
+
Sbjct: 107 F 107
Score = 27.0 bits (60), Expect = 1.5
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY 108
N+ L + ++Q+ D G Y C D G +
Sbjct: 75 KNQVFLKMNSLQTDDTGTYYCTRDLYGGYPLGF 107
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120,
broadly neutralizing antibody, 3B3 single chain variable
fragment, immune system; 2.50A {Homo sapiens}
Length = 256
Score = 31.9 bits (73), Expect = 0.030
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 12/56 (21%)
Query: 4 MSWYQDT------FLI------EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSC 47
++WYQ +I +SDR G TLTI V+ DF Y C
Sbjct: 182 VAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYC 237
Score = 28.1 bits (63), Expect = 0.62
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 66 VSDRRLMETRGNKHTLTIKNVQSTDFGNYSC 96
+SDR G TLTI V+ DF Y C
Sbjct: 207 ISDRFSGSGSGTDFTLTITRVEPEDFALYYC 237
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system;
2.21A {Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 30.8 bits (70), Expect = 0.041
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 4 MSWYQ------DTFLIEPSVSDR--RLMETRGNKHTLTIKNVQSTDFGNYSCVAD 50
+WY+ + I S+ R ++ +L I +++ D G Y C AD
Sbjct: 34 TTWYRTQLGSTNEKTI--SIGGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQAD 86
Score = 28.1 bits (63), Expect = 0.32
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 61 ELSVSVSDR--RLMETRGNKHTLTIKNVQSTDFGNYSCVAD 99
E ++S+ R ++ +L I +++ D G Y C AD
Sbjct: 46 EKTISIGGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQAD 86
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 31.2 bits (71), Expect = 0.042
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 12/56 (21%)
Query: 4 MSWYQD------TFLI-----EPS-VSDRRLMETRGNKHTLTIKNVQSTDFGNYSC 47
+ WYQ LI PS V DR G +L I ++S D +Y C
Sbjct: 53 VYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYC 108
Score = 30.8 bits (70), Expect = 0.065
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 4 MSWYQD----TFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVA 49
++W D +E + ++ L++ Q +YSC
Sbjct: 169 VAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQV 218
Score = 30.8 bits (70), Expect = 0.066
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
G +L I ++S D +Y C
Sbjct: 88 GTSASLAISGLRSEDEADYYC 108
Score = 24.7 bits (54), Expect = 7.4
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 54 GRAKKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVA 98
G K + + ++ L++ Q +YSC
Sbjct: 175 GAPVKAGVET-TKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQV 218
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T
cell receptor delta, immune system; HET: NAG MAN FUC;
3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 31.5 bits (71), Expect = 0.043
Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 13/62 (20%)
Query: 4 MSWYQD------TFLI-------EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD 50
+ W++ L E TL I++ Q D G Y C AD
Sbjct: 32 VQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAAD 91
Query: 51 NN 52
Sbjct: 92 TW 93
Score = 28.4 bits (63), Expect = 0.50
Identities = 10/36 (27%), Positives = 12/36 (33%)
Query: 66 VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN 101
TL I++ Q D G Y C AD
Sbjct: 58 RLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTW 93
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus}
SCOP: b.1.1.1 b.1.1.2
Length = 185
Score = 31.0 bits (70), Expect = 0.045
Identities = 15/61 (24%), Positives = 19/61 (31%), Gaps = 14/61 (22%)
Query: 6 WY-QD-----TFLI-----EPSVSDRRLMETRGNKH---TLTIKNVQSTDFGNYSCVADN 51
WY Q LI D R + +L I + Q D Y C A +
Sbjct: 34 WYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSLHIADSQPGDSATYFCAASD 93
Query: 52 N 52
N
Sbjct: 94 N 94
Score = 29.8 bits (67), Expect = 0.15
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 80 TLTIKNVQSTDFGNYSCVADNN 101
+L I + Q D Y C A +N
Sbjct: 73 SLHIADSQPGDSATYFCAASDN 94
>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder,
SCFV, picomolar binder, immune system; 2.35A {Mus
musculus} SCOP: b.1.1.1 PDB: 1p4i_L
Length = 135
Score = 30.6 bits (70), Expect = 0.045
Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 13/61 (21%)
Query: 5 SWYQD------TFLI-----EPS-VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVA-DN 51
SW Q+ T LI V R G+K LTI Q+ D Y C +
Sbjct: 41 SWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALWYS 100
Query: 52 N 52
N
Sbjct: 101 N 101
Score = 27.5 bits (62), Expect = 0.70
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVA-DNN 101
G+K LTI Q+ D Y C +N
Sbjct: 75 GDKAALTITGAQTEDEAIYFCALWYSN 101
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 30.7 bits (69), Expect = 0.045
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 12/59 (20%)
Query: 1 MGMMSWYQDT-------FLIEPSVSDRRLMETR-----GNKHTLTIKNVQSTDFGNYSC 47
+G ++W++D P R ++ L I++V+ D Y C
Sbjct: 40 IGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVC 98
Score = 28.0 bits (62), Expect = 0.42
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 74 TRGNKHTLTIKNVQSTDFGNYSC 96
++ L I++V+ D Y C
Sbjct: 76 LHDHQAELHIRDVRGHDASIYVC 98
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 31.0 bits (70), Expect = 0.054
Identities = 14/145 (9%), Positives = 30/145 (20%), Gaps = 52/145 (35%)
Query: 6 WYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR---------- 55
++ P D + NK +I ++ G Y C + G
Sbjct: 37 LVKEG---SPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELV 93
Query: 56 -AKKYMELSVSVSDRRLMETRGN------------------------------------- 77
Y + ++S ++ + N
Sbjct: 94 VTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQ 153
Query: 78 -KHTLTIKNVQSTDFGNYSCVADNN 101
+ + V + C
Sbjct: 154 FQALFPVGPVTPSHRWMLRCYGSRR 178
Score = 30.6 bits (69), Expect = 0.069
Identities = 10/45 (22%), Positives = 15/45 (33%)
Query: 59 YMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG 103
E S D + NK +I ++ G Y C + G
Sbjct: 38 VKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAG 82
Score = 30.6 bits (69), Expect = 0.082
Identities = 4/51 (7%), Positives = 11/51 (21%)
Query: 2 GMMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN 52
++ D +L + + + V + C
Sbjct: 128 DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRR 178
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 30.7 bits (69), Expect = 0.055
Identities = 6/35 (17%), Positives = 17/35 (48%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVS 65
T+T++++ TD Y C + +++++
Sbjct: 76 TVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTID 110
Score = 26.8 bits (59), Expect = 1.2
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELS 112
T+T++++ TD Y C + ++++
Sbjct: 76 TVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVT 108
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 31.1 bits (70), Expect = 0.055
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 7/91 (7%)
Query: 11 FLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFG-NYSCVADNNLGRAKKYMELSVSVSDR 69
F+ P++ D LM + K T + +V D S +N +
Sbjct: 13 FIFPPNIKDV-LMISLTPKVTCVVVDVSEDDPDVQISWFVNNV-----EVHTAQTQTHRE 66
Query: 70 RLMETRGNKHTLTIKNVQSTDFGNYSCVADN 100
T TL I++ + C +N
Sbjct: 67 DYNSTIRVVSTLPIQHQDWMSGKEFKCKVNN 97
Score = 26.0 bits (57), Expect = 2.9
Identities = 7/50 (14%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRG---NKHTLTIKNVQSTDFGNYSCVADN 51
SW+ + + + + + TL I++ + C +N
Sbjct: 48 SWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNN 97
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 31.0 bits (70), Expect = 0.064
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 15/67 (22%)
Query: 4 MSWYQ--------------DTFLIEPSVSDRRLMETRGNKH-TLTIKNVQSTDFGNYSCV 48
+ WY+ I V ++ L+ K + +D G Y C
Sbjct: 33 LYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRPQDRQFILSSKKLLLSDSGFYLCA 92
Query: 49 ADNNLGR 55
++G
Sbjct: 93 WSVSVGA 99
Score = 26.0 bits (57), Expect = 3.5
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 65 SVSDRRLMETRGNKH-TLTIKNVQSTDFGNYSCVADNNLGR 104
V ++ L+ K + +D G Y C ++G
Sbjct: 59 EVPQNLSASRPQDRQFILSSKKLLLSDSGFYLCAWSVSVGA 99
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 30.3 bits (68), Expect = 0.065
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV 66
+LTI+N +D G Y C + + + S+ V
Sbjct: 74 SLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQV 109
Score = 28.7 bits (64), Expect = 0.26
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 80 TLTIKNVQSTDFGNYSC 96
+LTI+N +D G Y C
Sbjct: 74 SLTIENSVESDSGLYCC 90
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 30.6 bits (68), Expect = 0.067
Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 10/98 (10%)
Query: 10 TFLIEPSVSDRRLMETRG---NKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV 66
++ + + +G ++ T K + V ++ + SV
Sbjct: 27 SYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV 86
Query: 67 SDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR 104
++ TL + +V D G Y C R
Sbjct: 87 ANL-------AAPTLRLTHVHPQDGGRYWCQVAQWSIR 117
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 30.7 bits (69), Expect = 0.070
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 13/64 (20%)
Query: 4 MSWYQD------TFLI-----EPSVSDR--RLMETRGNKHTLTIKNVQSTDFGNYSCVAD 50
+ WYQ TFL R + L +K +Q D +Y C
Sbjct: 31 LFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKGYSYLLLKELQMKDSASYLCAVQ 90
Query: 51 NNLG 54
+ G
Sbjct: 91 ASGG 94
Score = 27.6 bits (61), Expect = 0.90
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVADNNLG 103
L +K +Q D +Y C + G
Sbjct: 67 KGYSYLLLKELQMKDSASYLCAVQASGG 94
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 30.6 bits (68), Expect = 0.071
Identities = 8/51 (15%), Positives = 13/51 (25%), Gaps = 9/51 (17%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG 54
+ W +D + K+T + N G Y C
Sbjct: 136 IKWLKD---------GSIISPLNATKNTWNLGNNAKDPRGTYQCQGAKETS 177
Score = 30.2 bits (67), Expect = 0.089
Identities = 6/36 (16%), Positives = 9/36 (25%)
Query: 68 DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG 103
+ K+T + N G Y C
Sbjct: 142 GSIISPLNATKNTWNLGNNAKDPRGTYQCQGAKETS 177
Score = 30.2 bits (67), Expect = 0.11
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 12/67 (17%)
Query: 3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQST-DFGNYSCVADNNLGRAKKYME 61
+ W ++ + + L +++ D G Y C + Y++
Sbjct: 28 NLKWEKNGQELPQ-----------KHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLK 76
Query: 62 LSVSVSD 68
V +D
Sbjct: 77 ARVGSAD 83
Score = 26.0 bits (56), Expect = 3.0
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 76 GNKHTLTIKNVQST-DFGNYSCVADNNLGRAKKY 108
+ L +++ D G Y C + Y
Sbjct: 41 KHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLY 74
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 30.0 bits (67), Expect = 0.076
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 15/79 (18%)
Query: 4 MSWYQD------TFLIEPSVSDRRLMETR--------GNKHTLTIKNVQSTDFGNYSC-V 48
W ++ L+ S +R T+T+ +++ D G+Y C +
Sbjct: 44 KGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRI 103
Query: 49 ADNNLGRAKKYMELSVSVS 67
+ K + + VS
Sbjct: 104 YRPSDNSVSKSVRFYLVVS 122
Score = 25.7 bits (56), Expect = 2.9
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 80 TLTIKNVQSTDFGNYSCVADNN 101
T+T+ +++ D G+Y C
Sbjct: 85 TVTMTDLREEDSGHYWCRIYRP 106
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 29.8 bits (67), Expect = 0.085
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSELE 115
TL + N+Q D G Y C+ + + E
Sbjct: 70 TLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSE 105
Score = 29.0 bits (65), Expect = 0.15
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 31 TLTIKNVQSTDFGNYSC 47
TL + N+Q D G Y C
Sbjct: 70 TLRLHNLQIKDKGLYQC 86
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 30.2 bits (68), Expect = 0.086
Identities = 14/113 (12%), Positives = 26/113 (23%), Gaps = 43/113 (38%)
Query: 27 GNKHTLTIKNVQSTDFGNYSCVADNNLGR-----------AKKYMELSVSVSDRRLME-- 73
++ L I ++ + G Y C N + + S+S +
Sbjct: 49 QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSG 108
Query: 74 ------------------------------TRGNKHTLTIKNVQSTDFGNYSC 96
R + + I V + G Y C
Sbjct: 109 GDVTLQCQTRYGFDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRC 161
Score = 27.1 bits (60), Expect = 1.3
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVADNNLGR 104
++ L I ++ + G Y C N
Sbjct: 49 QDQAVLFIPAMKRSLAGRYRCSYQNGSLW 77
Score = 25.2 bits (55), Expect = 5.3
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 26 RGNKHTLTIKNVQSTDFGNYSC 47
R + + I V + G Y C
Sbjct: 140 RWYRASFPIITVTAAHSGTYRC 161
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA,
IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB:
3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Length = 257
Score = 30.3 bits (69), Expect = 0.089
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 12/56 (21%)
Query: 4 MSWYQDT------FLI------EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSC 47
+ WYQ I V R G ++LTI ++++ D +Y C
Sbjct: 174 LYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFC 229
Score = 28.4 bits (64), Expect = 0.46
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 65 SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSC 96
V R G ++LTI ++++ D +Y C
Sbjct: 198 GVPARFSGSGSGTSYSLTISSMEAEDAASYFC 229
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody,
domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Length = 256
Score = 30.4 bits (69), Expect = 0.091
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 12/63 (19%)
Query: 4 MSWYQDT------FLI------EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN 51
+ WY LI V DR G TL I V++ D G Y C +
Sbjct: 158 LEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGS 217
Query: 52 NLG 54
++
Sbjct: 218 HVP 220
Score = 27.7 bits (62), Expect = 0.78
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVADNNLG 103
G TL I V++ D G Y C +++
Sbjct: 193 GTDFTLKISRVEAEDLGVYYCFQGSHVP 220
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 29.9 bits (67), Expect = 0.092
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV 66
+LTI+N D G Y CV + L V
Sbjct: 75 SLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKP 110
Score = 28.8 bits (64), Expect = 0.25
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 80 TLTIKNVQSTDFGNYSC 96
+LTI+N D G Y C
Sbjct: 75 SLTIENTVVGDGGPYCC 91
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 30.2 bits (68), Expect = 0.092
Identities = 15/128 (11%), Positives = 25/128 (19%), Gaps = 44/128 (34%)
Query: 15 PSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKK-----------YMELS 63
RRL I ++ + G Y C R + Y +
Sbjct: 49 YREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPF 108
Query: 64 VSVSDRRLMETRGN---------------------------------KHTLTIKNVQSTD 90
+S ++ N ++ V
Sbjct: 109 LSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNV 168
Query: 91 FGNYSCVA 98
G Y C
Sbjct: 169 SGIYRCYG 176
Score = 29.8 bits (67), Expect = 0.16
Identities = 8/47 (17%), Positives = 12/47 (25%)
Query: 58 KYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR 104
+ RRL I ++ + G Y C R
Sbjct: 43 IIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYR 89
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 29.8 bits (67), Expect = 0.093
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVS 67
+ + +Q D G Y C+ D G + +S+++
Sbjct: 69 QVEMVTLQEEDAGEYGCMVDGARGP-QILHRVSLNIL 104
Score = 26.8 bits (59), Expect = 0.99
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGR 104
+ + +Q D G Y C+ D G
Sbjct: 69 QVEMVTLQEEDAGEYGCMVDGARGP 93
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1;
signal regulatory protein alpha, immunoglobulin
superfamily, phosphoprotein; HET: NAG; 2.49A {Homo
sapiens}
Length = 327
Score = 30.3 bits (68), Expect = 0.095
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 12/61 (19%)
Query: 4 MSWYQDT-------FLIEPSVSDRRLMETR-----GNKHTLTIKNVQSTDFGNYSCVADN 51
+ W++ + + R + +++I N+ D G Y CV
Sbjct: 36 IQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVKFR 95
Query: 52 N 52
Sbjct: 96 K 96
Score = 29.1 bits (65), Expect = 0.23
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVADNN 101
+++I N+ D G Y CV
Sbjct: 71 NMDFSISISNITPADAGTYYCVKFRK 96
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D
3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 30.3 bits (68), Expect = 0.096
Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 12/56 (21%)
Query: 4 MSWYQD------TFLI-----EPSVSDRRLMETRGNKH-TLTIKNVQSTDFGNYSC 47
+ WY+ ++I + L K TL + D Y C
Sbjct: 32 IHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYC 87
Score = 26.1 bits (57), Expect = 2.6
Identities = 5/21 (23%), Positives = 6/21 (28%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
TL + D Y C
Sbjct: 67 RKSSTLILHRATLRDAAVYYC 87
>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus
musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A
1d9k_A*
Length = 110
Score = 29.5 bits (67), Expect = 0.096
Identities = 17/66 (25%), Positives = 20/66 (30%), Gaps = 18/66 (27%)
Query: 6 WYQD------TFLI------EPSVSDRRLMETRGNKH----TLTIKNVQSTDFGNYSCVA 49
WYQ LI + R NK +L I + Q D Y C A
Sbjct: 33 WYQQFPGEGPALLISILSVSDKKEDGR--FTIFFNKREKKLSLHIADSQPGDSATYFCAA 90
Query: 50 DNNLGR 55
N G
Sbjct: 91 SANSGT 96
Score = 28.4 bits (64), Expect = 0.26
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGR 104
+L I + Q D Y C A N G
Sbjct: 72 SLHIADSQPGDSATYFCAASANSGT 96
>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity,
multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1
PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L*
1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*
Length = 120
Score = 29.8 bits (68), Expect = 0.100
Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 13/61 (21%)
Query: 5 SWYQD------TFLI-----EPS-VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVA-DN 51
+W Q+ T LI V R GNK LTI Q+ D Y C +
Sbjct: 36 NWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIYFCALWYS 95
Query: 52 N 52
N
Sbjct: 96 N 96
Score = 26.3 bits (59), Expect = 1.6
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVA-DNN 101
GNK LTI Q+ D Y C +N
Sbjct: 70 GNKAALTITGAQTEDEAIYFCALWYSN 96
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable
domain, human constant...; natural killer T cell
receptor, immune system; 1.60A {Mus musculus} PDB:
4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E*
3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 30.4 bits (68), Expect = 0.10
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 17/61 (27%)
Query: 4 MSWYQDT------FLI----------EPSVSDRRLME-TRGNKHTLTIKNVQSTDFGNYS 46
WY+ FL+ D+ +E G+ TL I+ D Y
Sbjct: 33 FYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDSAVYF 92
Query: 47 C 47
C
Sbjct: 93 C 93
Score = 26.1 bits (57), Expect = 3.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
G+ TL I+ D Y C
Sbjct: 73 GSYFTLKIQPTALEDSAVYFC 93
>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold,
immune system; HET: AB0; 1.70A {Mus musculus} PDB:
3iy1_A
Length = 119
Score = 29.4 bits (67), Expect = 0.11
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 31 TLTIKNVQSTDFGNYSC 47
+ +I N++ D Y C
Sbjct: 74 SFSISNLEPEDAATYYC 90
Score = 29.4 bits (67), Expect = 0.11
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 80 TLTIKNVQSTDFGNYSC 96
+ +I N++ D Y C
Sbjct: 74 SFSISNLEPEDAATYYC 90
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 30.2 bits (68), Expect = 0.12
Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 14/70 (20%)
Query: 4 MSWYQD------TFLI-----EPSVSDRRL---METRGNKHTLTIKNVQSTDFGNYSCVA 49
+ WY+ FLI E + R + LTI +Q D Y C
Sbjct: 169 IFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCAL 228
Query: 50 DNNLGRAKKY 59
+L RA K
Sbjct: 229 GESLTRADKL 238
Score = 27.5 bits (61), Expect = 1.0
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKY 108
LTI +Q D Y C +L RA K
Sbjct: 206 AKSVALTISALQLEDSAKYFCALGESLTRADKL 238
Score = 26.7 bits (59), Expect = 1.7
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 19/63 (30%)
Query: 4 MSWYQD------TFLI-----------EPSVSDRRLMETRGNKHT--LTIKNVQSTDFGN 44
+ WY L+ E +S + + + ++N+ D G
Sbjct: 34 IHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIENDSGV 93
Query: 45 YSC 47
Y C
Sbjct: 94 YYC 96
>3bdb_A Novel immune-type receptor 11; immunoglobulin variable
domain-like beta-sandwich, stalk region, immune system;
2.80A {Ictalurus punctatus}
Length = 137
Score = 29.6 bits (67), Expect = 0.13
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 27 GNKHTLTIKNVQSTDFGNYSC 47
K L I + D G Y C
Sbjct: 73 DQKFDLNIIGAREDDGGEYFC 93
Score = 29.6 bits (67), Expect = 0.13
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
K L I + D G Y C
Sbjct: 73 DQKFDLNIIGAREDDGGEYFC 93
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 29.3 bits (66), Expect = 0.13
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 16/78 (20%)
Query: 4 MSWYQD------TFLIEPSVSDRRLMETR--------GNKHTLTIKNVQSTDFGNYSCVA 49
W Q L+E S++ + + R T+T+++++ +D G Y C
Sbjct: 34 KYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGI 93
Query: 50 DNNLGRAKKYMELSVSVS 67
G +++V++
Sbjct: 94 TK--GGLDPMFKVTVNIG 109
Score = 26.2 bits (58), Expect = 1.7
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 80 TLTIKNVQSTDFGNYSCVADNN 101
T+T+++++ +D G Y C
Sbjct: 75 TVTMEDLRMSDAGIYWCGITKG 96
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin;
immune system/receptor, immune system/receptor/complex,
TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A
2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D
3qeq_D
Length = 215
Score = 30.0 bits (67), Expect = 0.13
Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 14/66 (21%)
Query: 4 MSWY-QD-----TFLI-----EPSVSDRRLMET--RGNKH-TLTIKNVQSTDFGNYSCVA 49
+ WY Q+ L+ +RL K +L I Q D G Y C
Sbjct: 32 LQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAG 91
Query: 50 DNNLGR 55
+ G
Sbjct: 92 AGSQGN 97
Score = 28.4 bits (63), Expect = 0.44
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGR 104
+L I Q D G Y C + G
Sbjct: 73 SLHITAAQPGDTGLYLCAGAGSQGN 97
>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single
chain FV, immune system; 2.67A {Homo sapiens}
Length = 143
Score = 29.5 bits (67), Expect = 0.13
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 31 TLTIKNVQSTDFGNYSC 47
TLTI N++ DF Y C
Sbjct: 71 TLTISNLEPEDFAVYYC 87
Score = 29.5 bits (67), Expect = 0.13
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 80 TLTIKNVQSTDFGNYSC 96
TLTI N++ DF Y C
Sbjct: 71 TLTISNLEPEDFAVYYC 87
>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain;
antibody-peptide complex, immunoglobulin fold, type II'
beta turn., immune system; 1.80A {Mus musculus} SCOP:
b.1.1.1 PDB: 1i8i_A
Length = 107
Score = 29.0 bits (66), Expect = 0.14
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 31 TLTIKNVQSTDFGNYSC 47
TI+N S D G+Y C
Sbjct: 72 VFTIENTLSEDVGDYYC 88
Score = 29.0 bits (66), Expect = 0.14
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 80 TLTIKNVQSTDFGNYSC 96
TI+N S D G+Y C
Sbjct: 72 VFTIENTLSEDVGDYYC 88
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody,
virus/viral protein/antibiotic complex; 2.30A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.1
Length = 247
Score = 29.9 bits (68), Expect = 0.14
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 12/63 (19%)
Query: 4 MSWYQ------------DTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN 51
++WYQ D + DR G TLTI ++ DF Y C +
Sbjct: 167 LAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRS 226
Query: 52 NLG 54
N
Sbjct: 227 NWP 229
Score = 27.3 bits (61), Expect = 1.1
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVADNNLG 103
G TLTI ++ DF Y C +N
Sbjct: 202 GTDFTLTISRLEPEDFAVYYCQQRSNWP 229
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 30.0 bits (67), Expect = 0.14
Identities = 7/70 (10%), Positives = 19/70 (27%), Gaps = 3/70 (4%)
Query: 4 MSWYQDT---FLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60
++W + + +++ T TL + + Y C +
Sbjct: 149 LTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMR 208
Query: 61 ELSVSVSDRR 70
+ + R
Sbjct: 209 STTKTSGPRA 218
Score = 26.9 bits (59), Expect = 1.4
Identities = 7/44 (15%), Positives = 14/44 (31%)
Query: 57 KKYMELSVSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN 100
K + S +++ T TL + + Y C +
Sbjct: 156 GKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTH 199
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 29.0 bits (65), Expect = 0.14
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSD 68
L I NV+ D G Y K ++ V D
Sbjct: 74 ALHISNVRKEDKGTYYMRVLRETENELKI---TLEVFD 108
Score = 28.3 bits (63), Expect = 0.34
Identities = 8/29 (27%), Positives = 9/29 (31%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKY 108
L I NV+ D G Y K
Sbjct: 74 ALHISNVRKEDKGTYYMRVLRETENELKI 102
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 30.0 bits (67), Expect = 0.15
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 17/61 (27%)
Query: 4 MSWYQDT------FLI----------EPSVSDRRLMETRGNKH-TLTIKNVQSTDFGNYS 46
+ WYQ FLI R E N +L I++ ++ D Y
Sbjct: 58 VFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYL 117
Query: 47 C 47
C
Sbjct: 118 C 118
Score = 25.4 bits (55), Expect = 5.0
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 66 VSDRRLMETRGNKH-TLTIKNVQSTDFGNYSC 96
R E N +L I++ ++ D Y C
Sbjct: 87 TEKRFSAECPSNSPCSLEIQSSEAGDSALYLC 118
>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble
protein, KD, protein engineering, immunotherapy,
immune-suppressor, immune system; 2.10A {Homo sapiens}
PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A
Length = 114
Score = 29.2 bits (66), Expect = 0.15
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 27 GNKHTLTIKNVQSTDFGNYSCVA-DNNLG 54
G+ LT+ + + + G Y C A N++
Sbjct: 74 GDTFVLTLSDFRRENEGYYFCSALSNSIM 102
Score = 29.2 bits (66), Expect = 0.15
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVA-DNNLG 103
G+ LT+ + + + G Y C A N++
Sbjct: 74 GDTFVLTLSDFRRENEGYYFCSALSNSIM 102
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 29.9 bits (67), Expect = 0.16
Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 18/62 (29%)
Query: 4 MSWYQ----------------DTFLIEPSVSDRRLMETRGNK--HTLTIKNVQSTDFGNY 45
M WY+ E V + + + TLT+ + D Y
Sbjct: 56 MFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSFY 115
Query: 46 SC 47
C
Sbjct: 116 IC 117
Score = 27.5 bits (61), Expect = 0.78
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
TLT+ + D Y C
Sbjct: 97 LTLSTLTVTSAHPEDSSFYIC 117
>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein,
cytochrome C oxidase, high- resolution structure,
immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB:
1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A
1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A
1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...
Length = 120
Score = 29.1 bits (66), Expect = 0.17
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 31 TLTIKNVQSTDFGNYSC 47
+L I ++ DFG+Y C
Sbjct: 72 SLKINSLLPEDFGSYYC 88
Score = 29.1 bits (66), Expect = 0.17
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 80 TLTIKNVQSTDFGNYSC 96
+L I ++ DFG+Y C
Sbjct: 72 SLKINSLLPEDFGSYYC 88
>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP:
b.1.1.1 PDB: 3iy6_A
Length = 111
Score = 29.0 bits (66), Expect = 0.17
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 31 TLTIKNVQSTDFGNYSC 47
TLTI NVQS D +Y C
Sbjct: 75 TLTISNVQSEDLADYFC 91
Score = 29.0 bits (66), Expect = 0.17
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 80 TLTIKNVQSTDFGNYSC 96
TLTI NVQS D +Y C
Sbjct: 75 TLTISNVQSEDLADYFC 91
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 29.1 bits (65), Expect = 0.17
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSV 66
+L IKNV D G Y C K +EL + +
Sbjct: 73 SLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDI 108
Score = 28.0 bits (62), Expect = 0.45
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 80 TLTIKNVQSTDFGNYSC 96
+L IKNV D G Y C
Sbjct: 73 SLIIKNVTLDDHGTYCC 89
>1oga_E TRBC1, T-cell receptor beta chain C region; immune
system/receptor, immune system/receptor/complex, TCR,
MHC, immunodominance, FLU, complex; 1.40A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E
2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D*
3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D*
2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Length = 252
Score = 29.6 bits (66), Expect = 0.17
Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 16/60 (26%)
Query: 4 MSWYQDT------FLI---------EPSVSDRRLMETRGNKH-TLTIKNVQSTDFGNYSC 47
M WY+ + + +++ + + LT+ + Q Y C
Sbjct: 34 MYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFYLC 93
Score = 25.0 bits (54), Expect = 6.0
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 66 VSDRRLMETRGNKH-TLTIKNVQSTDFGNYSC 96
+++ + + LT+ + Q Y C
Sbjct: 62 IAEGYSVSREKKESFPLTVTSAQKNPTAFYLC 93
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling,
immune system; NMR {Homo sapiens}
Length = 523
Score = 29.8 bits (67), Expect = 0.17
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 12/61 (19%)
Query: 4 MSWYQDT------FLI------EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN 51
++WYQ LI V R G +L I +++ D +Y C + N
Sbjct: 32 VNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYYCASWN 91
Query: 52 N 52
+
Sbjct: 92 S 92
Score = 27.5 bits (61), Expect = 1.2
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 65 SVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN 101
V R G +L I +++ D +Y C + N+
Sbjct: 56 GVPTRFSGSKSGTSASLAISGLEAEDESDYYCASWNS 92
Score = 27.1 bits (60), Expect = 1.5
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 5 SWYQD---TFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN 51
+WY D + +++ T LT+ + D Y C N
Sbjct: 356 NWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSN 405
Score = 26.0 bits (57), Expect = 3.7
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Query: 9 DTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFG-NYSCVADNNLGRAKKYMELSVSVS 67
FL P D LM +R + T + +V D ++ D +
Sbjct: 319 SVFLFPPKPKDT-LMISRTPEVTCVVVDVSHEDPQVKFNWYVDG-----VQVHNAKTKPR 372
Query: 68 DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN 100
+++ T LT+ + D Y C N
Sbjct: 373 EQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSN 405
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein
hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Length = 108
Score = 29.0 bits (66), Expect = 0.18
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 31 TLTIKNVQSTDFGNYSC 47
TLTI +VQ+ DF +Y C
Sbjct: 72 TLTISSVQAEDFADYHC 88
Score = 29.0 bits (66), Expect = 0.18
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 80 TLTIKNVQSTDFGNYSC 96
TLTI +VQ+ DF +Y C
Sbjct: 72 TLTISSVQAEDFADYHC 88
>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain
amyloidosis, amyloid, immunoglobulin, protein fibril;
1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A
3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A
3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L*
1bvk_A ...
Length = 109
Score = 28.6 bits (65), Expect = 0.18
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 31 TLTIKNVQSTDFGNYSC 47
T TI ++Q D Y C
Sbjct: 74 TFTISSLQPEDIATYYC 90
Score = 28.6 bits (65), Expect = 0.18
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 80 TLTIKNVQSTDFGNYSC 96
T TI ++Q D Y C
Sbjct: 74 TFTISSLQPEDIATYYC 90
>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer,
immunoglobulin superfamily (beta S fold, receptor,
signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A
{Homo sapiens} PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C*
3bx7_C
Length = 130
Score = 29.0 bits (64), Expect = 0.19
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 15/59 (25%)
Query: 4 MSWYQD-------------TFLIEPSVSDRRLME--TRGNKHTLTIKNVQSTDFGNYSC 47
++ + E + D + + GN+ LTI+ +++ D G Y C
Sbjct: 36 VTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYIC 94
Score = 28.2 bits (62), Expect = 0.46
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
GN+ LTI+ +++ D G Y C
Sbjct: 74 GNQVNLTIQGLRAMDTGLYIC 94
>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen);
2.40A {Mus musculus} SCOP: b.1.1.1
Length = 108
Score = 28.6 bits (65), Expect = 0.19
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 31 TLTIKNVQSTDFGNYSC 47
TLTI +++ DF Y C
Sbjct: 72 TLTISSLEPEDFAMYIC 88
Score = 28.6 bits (65), Expect = 0.19
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 80 TLTIKNVQSTDFGNYSC 96
TLTI +++ DF Y C
Sbjct: 72 TLTISSLEPEDFAMYIC 88
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 29.6 bits (66), Expect = 0.19
Identities = 5/51 (9%), Positives = 15/51 (29%), Gaps = 3/51 (5%)
Query: 4 MSWYQD---TFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN 51
++W ++ +P V T + + ++C +
Sbjct: 48 VTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQH 98
>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex,
scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L
3h3p_L 3lhp_L
Length = 146
Score = 29.1 bits (66), Expect = 0.20
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 31 TLTIKNVQSTDFGNYSC 47
TLTI +++ DF Y C
Sbjct: 87 TLTISSLEPEDFAIYYC 103
Score = 29.1 bits (66), Expect = 0.20
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 80 TLTIKNVQSTDFGNYSC 96
TLTI +++ DF Y C
Sbjct: 87 TLTISSLEPEDFAIYYC 103
>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus
musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A
1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L
1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C
Length = 113
Score = 28.6 bits (65), Expect = 0.20
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 31 TLTIKNVQSTDFGNYSC 47
TL I V++ D G Y C
Sbjct: 77 TLKISRVEAEDLGVYFC 93
Score = 28.6 bits (65), Expect = 0.20
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 80 TLTIKNVQSTDFGNYSC 96
TL I V++ D G Y C
Sbjct: 77 TLKISRVEAEDLGVYFC 93
>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope
proteins, structural genomics, antibody epito
flavivirus, niaid; 2.50A {Mus musculus}
Length = 126
Score = 29.0 bits (66), Expect = 0.20
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 31 TLTIKNVQSTDFGNYSC 47
TLTI +V++ D Y C
Sbjct: 76 TLTIDSVETDDAATYYC 92
Score = 29.0 bits (66), Expect = 0.20
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 80 TLTIKNVQSTDFGNYSC 96
TLTI +V++ D Y C
Sbjct: 76 TLTIDSVETDDAATYYC 92
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 29.2 bits (65), Expect = 0.21
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 14/70 (20%)
Query: 4 MSWY-QD-----TFLI-----EPSVSDRRLMET--RGNKH-TLTIKNVQSTDFGNYSCVA 49
+ WY QD L E + S+ R T K +L I Q +D +Y CV
Sbjct: 35 LRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYICVV 94
Query: 50 DNNLGRAKKY 59
+ +
Sbjct: 95 SDRGSTLGRL 104
Score = 25.8 bits (56), Expect = 3.3
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKY 108
+L I Q +D +Y CV + +
Sbjct: 76 SLHITASQLSDSASYICVVSDRGSTLGRL 104
>2qhl_A Novel immune-type receptor 10; immunoglobulin variable
domain-like beta-sandwich, immune system; 1.56A
{Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A
Length = 111
Score = 28.7 bits (65), Expect = 0.21
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 27 GNKHTLTIKNVQSTDFGNYSC 47
K L I + D G Y C
Sbjct: 73 DQKFDLNIIGTREDDGGEYFC 93
Score = 28.7 bits (65), Expect = 0.21
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
K L I + D G Y C
Sbjct: 73 DQKFDLNIIGTREDDGGEYFC 93
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 29.3 bits (64), Expect = 0.22
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 23 METRGNKHTLTIKNVQSTDFGNYSCVADNNL 53
E G+ TLTI+ + D G Y+C +
Sbjct: 44 SEVLGSGKTLTIQVKEFGDAGQYTCHKGGEV 74
Score = 29.3 bits (64), Expect = 0.22
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 72 METRGNKHTLTIKNVQSTDFGNYSCVADNNL 102
E G+ TLTI+ + D G Y+C +
Sbjct: 44 SEVLGSGKTLTIQVKEFGDAGQYTCHKGGEV 74
>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain;
immunoglobulin, immune system; 1.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A
Length = 111
Score = 28.6 bits (65), Expect = 0.23
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 31 TLTIKNVQSTDFGNYSC 47
TL I V++ D Y C
Sbjct: 76 TLIIDPVEADDVATYYC 92
Score = 28.6 bits (65), Expect = 0.23
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 80 TLTIKNVQSTDFGNYSC 96
TL I V++ D Y C
Sbjct: 76 TLIIDPVEADDVATYYC 92
>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen
bonds, immune system; 1.50A {Homo sapiens} SCOP:
b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A
1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A
3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A*
...
Length = 114
Score = 28.6 bits (65), Expect = 0.23
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 31 TLTIKNVQSTDFGNYSC 47
TLTI ++Q+ D Y C
Sbjct: 78 TLTISSLQAEDVAVYYC 94
Score = 28.6 bits (65), Expect = 0.23
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 80 TLTIKNVQSTDFGNYSC 96
TLTI ++Q+ D Y C
Sbjct: 78 TLTISSLQAEDVAVYYC 94
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system;
2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Length = 112
Score = 28.8 bits (65), Expect = 0.23
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAK 57
L +VQ +D Y C N G K
Sbjct: 73 HLQKASVQESDSAVYYCALSENYGNEK 99
Score = 28.8 bits (65), Expect = 0.23
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAK 106
L +VQ +D Y C N G K
Sbjct: 73 HLQKASVQESDSAVYYCALSENYGNEK 99
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 29.1 bits (65), Expect = 0.25
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 7/91 (7%)
Query: 11 FLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFG-NYSCVADNNLGRAKKYMELSVSVSDR 69
FL P D LM +R + T + +V D ++ D + +
Sbjct: 26 FLFPPKPKDT-LMISRTPEVTCVVVDVSHEDPEVKFNWYVDG-----VEVHNAKTKPREE 79
Query: 70 RLMETRGNKHTLTIKNVQSTDFGNYSCVADN 100
+ T LT+ + + Y C N
Sbjct: 80 QYNSTYRVVSVLTVLHQDWLNGKEYKCKVSN 110
Score = 24.9 bits (54), Expect = 7.4
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRG---NKHTLTIKNVQSTDFGNYSCVADN 51
+WY D + + + R + LT+ + + Y C N
Sbjct: 61 NWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSN 110
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 29.1 bits (65), Expect = 0.25
Identities = 7/60 (11%), Positives = 16/60 (26%), Gaps = 16/60 (26%)
Query: 4 MSWYQDT------FLI---------EPSVSDRRLME-TRGNKHTLTIKNVQSTDFGNYSC 47
M WY+ + + + D + +L ++ + Y C
Sbjct: 30 MYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQTSVYFC 89
Score = 26.1 bits (57), Expect = 3.0
Identities = 3/21 (14%), Positives = 8/21 (38%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
+ +L ++ + Y C
Sbjct: 69 QEQFSLILELATPSQTSVYFC 89
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 28.8 bits (64), Expect = 0.26
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYME-LSVSVSD 68
TL+I++ + +D G Y + + + LSV+V+
Sbjct: 89 TLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVTA 127
Score = 26.1 bits (57), Expect = 2.4
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 80 TLTIKNVQSTDFGNYSCVADN 100
TL+I++ + +D G Y +
Sbjct: 89 TLSIRDARMSDAGRYFFRMEK 109
>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold,
fluorogen activation, dimethylindole RE binding
protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB:
3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A
Length = 123
Score = 28.2 bits (64), Expect = 0.29
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 13/62 (20%)
Query: 5 SWYQD------TFLI-----EPS-VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVA-DN 51
WYQ LI S V DR G +L I ++S D +Y C++ D+
Sbjct: 35 YWYQQFPGTTPKVLIYNDDRRSSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCLSWDD 94
Query: 52 NL 53
+L
Sbjct: 95 SL 96
Score = 24.8 bits (55), Expect = 5.8
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVA-DNNL 102
G +L I ++S D +Y C++ D++L
Sbjct: 69 GTSASLAISGLRSEDEADYYCLSWDDSL 96
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo
sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E
3mfg_B 2ij0_E
Length = 246
Score = 28.7 bits (64), Expect = 0.32
Identities = 11/62 (17%), Positives = 16/62 (25%), Gaps = 18/62 (29%)
Query: 4 MSWYQ----------------DTFLIEPSVSDRRLMETR--GNKHTLTIKNVQSTDFGNY 45
M WY+ E V + + TLT+ + D Y
Sbjct: 33 MFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSFY 92
Query: 46 SC 47
C
Sbjct: 93 IC 94
Score = 26.7 bits (59), Expect = 1.5
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
TLT+ + D Y C
Sbjct: 74 LTLSTLTVTSAHPEDSSFYIC 94
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 28.7 bits (64), Expect = 0.32
Identities = 6/49 (12%), Positives = 11/49 (22%), Gaps = 1/49 (2%)
Query: 4 MSWYQDTFLIEPS-VSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN 51
+W + +R L L ++C A
Sbjct: 39 FTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAY 87
Score = 26.0 bits (57), Expect = 2.7
Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 13/92 (14%)
Query: 11 FLIEPSVSDRRLMETRGNKHTLT--IKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSD 68
L P++ D L G++ LT + ++ ++ + +
Sbjct: 7 SLHRPALEDLLL----GSEANLTCTLTGLRDASGVTFTWTPSSG-------KSAVQGPPE 55
Query: 69 RRLMETRGNKHTLTIKNVQSTDFGNYSCVADN 100
R L L ++C A
Sbjct: 56 RDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAY 87
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 28.3 bits (63), Expect = 0.35
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRA--KKYMELSVSVS 67
T+T++N+ D G Y C D + +E+ VSV
Sbjct: 69 TVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEVSVF 107
Score = 24.4 bits (53), Expect = 8.2
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGR 104
T+T++N+ D G Y C D +
Sbjct: 69 TVTLENLTEEDAGTYWCGVDTPWLQ 93
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 28.2 bits (62), Expect = 0.36
Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQST-DFGNYSCVADNNLGRAKKY 59
+ W + I D+ + ++ L++K G Y C + +
Sbjct: 36 ILWQHNDKNIGGDEDDKNIGS---DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANF 89
Score = 25.5 bits (55), Expect = 3.2
Identities = 5/33 (15%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 77 NKHTLTIKNVQST-DFGNYSCVADNNLGRAKKY 108
++ L++K G Y C + +
Sbjct: 57 DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANF 89
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4;
beta barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 28.0 bits (62), Expect = 0.38
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 31 TLTIKNVQSTDFGNYSC 47
+LTI N D G Y C
Sbjct: 74 SLTISNTNRGDSGVYCC 90
Score = 28.0 bits (62), Expect = 0.38
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 80 TLTIKNVQSTDFGNYSC 96
+LTI N D G Y C
Sbjct: 74 SLTISNTNRGDSGVYCC 90
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY
high affinity, antibody binding, electrostatics,
directed evolution; HET: FLU; 1.50A {Homo sapiens}
Length = 268
Score = 28.5 bits (64), Expect = 0.43
Identities = 14/63 (22%), Positives = 19/63 (30%), Gaps = 12/63 (19%)
Query: 4 MSWYQ------------DTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN 51
+ WY V DR G TL I V++ D G Y C
Sbjct: 52 LRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAEDLGVYFCSQST 111
Query: 52 NLG 54
++
Sbjct: 112 HVP 114
Score = 26.6 bits (59), Expect = 1.8
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVADNNLG 103
G TL I V++ D G Y C ++
Sbjct: 87 GTDFTLKINRVEAEDLGVYFCSQSTHVP 114
>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta
sheet, immune system; 1.60A {Homo sapiens} SCOP:
b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A*
2w0l_A
Length = 109
Score = 27.8 bits (63), Expect = 0.43
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 12/57 (21%)
Query: 5 SWYQD----TFLI-----EPS-VSDR--RLMETRGNKHTLTIKNVQSTDFGNYSCVA 49
WYQ +I PS V DR ++ N +LTI +++ D +Y C +
Sbjct: 35 QWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEADYYCQS 91
Score = 24.4 bits (54), Expect = 6.4
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVA 98
N +LTI +++ D +Y C +
Sbjct: 69 SNSASLTISGLKTEDEADYYCQS 91
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 27.7 bits (62), Expect = 0.46
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 58 KYMELSVSVSDRRLMETR--GNKH-TLTIKNVQSTDFGNYSCVADNNLGR 104
E S+S R +ET G+K +L I ++ D G Y C ++ G
Sbjct: 43 SRNEESISDGGR-YVETVNRGSKSFSLRINDLTVKDSGTYRCKPESRYGS 91
Score = 27.7 bits (62), Expect = 0.58
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 12/61 (19%)
Query: 4 MSWYQ------DTFLIEPSVSDRRLMETR--GNKH-TLTIKNVQSTDFGNYSCVADNNLG 54
WY+ + I S R +ET G+K +L I ++ D G Y C ++ G
Sbjct: 34 GYWYRKPPGSRNEESI--SDGGR-YVETVNRGSKSFSLRINDLTVKDSGTYRCKPESRYG 90
Query: 55 R 55
Sbjct: 91 S 91
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 28.3 bits (63), Expect = 0.46
Identities = 5/54 (9%), Positives = 12/54 (22%), Gaps = 1/54 (1%)
Query: 3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 56
+++ + +K +I + G Y C
Sbjct: 37 HFLLHREGMFNDTLRLIGEH-HDGVSKANFSISRMTQDLAGTYRCYGSVTHSPY 89
Score = 27.6 bits (61), Expect = 0.77
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 2/62 (3%)
Query: 46 SCVADNNLGRAKKYMELSVSVSDRRLMET--RGNKHTLTIKNVQSTDFGNYSCVADNNLG 103
C +D + E + + R + E +K +I + G Y C
Sbjct: 28 QCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHS 87
Query: 104 RA 105
Sbjct: 88 PY 89
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family,
SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Length = 264
Score = 28.5 bits (64), Expect = 0.46
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 12/56 (21%)
Query: 4 MSWYQ------------DTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSC 47
++WYQ F + V DR G TLTI +V++ D Y C
Sbjct: 43 LAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAEDLAVYYC 98
Score = 24.6 bits (54), Expect = 7.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
G TLTI +V++ D Y C
Sbjct: 78 GTDFTLTIGSVKAEDLAVYYC 98
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 28.1 bits (62), Expect = 0.48
Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 14/61 (22%)
Query: 6 WY-QD-----TFLI-----EPSVSDRRL---METRGNKHTLTIKNVQSTDFGNYSCVADN 51
WY QD L + S+ R ++ TL I D Y CV +
Sbjct: 35 WYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDKDAKHSTLHITATLLDDTATYFCVVGD 94
Query: 52 N 52
Sbjct: 95 R 95
Score = 25.8 bits (56), Expect = 3.1
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 80 TLTIKNVQSTDFGNYSCVADNN 101
TL I D Y CV +
Sbjct: 74 TLHITATLLDDTATYFCVVGDR 95
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 28.5 bits (63), Expect = 0.49
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 17/66 (25%)
Query: 4 MSWYQDT------FLI---------EPSVSDRRLMETR--GNKHTLTIKNVQSTDFGNYS 46
+ WY+ + FLI + + + R R G+ TL I+ + D Y
Sbjct: 57 LYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERGDSAVYL 116
Query: 47 CVADNN 52
C
Sbjct: 117 CATSAL 122
Score = 25.4 bits (55), Expect = 5.0
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 74 TRGNKHTLTIKNVQSTDFGNYSCVADNN 101
G+ TL I+ + D Y C
Sbjct: 95 PEGSVSTLKIQRTERGDSAVYLCATSAL 122
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 28.2 bits (63), Expect = 0.49
Identities = 14/58 (24%), Positives = 17/58 (29%), Gaps = 14/58 (24%)
Query: 4 MSWY-QD-----TFLI------EPSVSDR--RLMETRGNKHTLTIKNVQSTDFGNYSC 47
WY Q LI + R R K +L I + Q D Y C
Sbjct: 159 FPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFC 216
Score = 25.5 bits (56), Expect = 4.4
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 16/62 (25%)
Query: 4 MSWY-QDT-----FLI---------EPSVSDRRLMETRGNKH-TLTIKNVQSTDFGNYSC 47
M WY QDT + + + D ++ +L ++ + Y C
Sbjct: 31 MYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSVYFC 90
Query: 48 VA 49
+
Sbjct: 91 AS 92
Score = 25.1 bits (55), Expect = 5.8
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 74 TRGNKHTLTIKNVQSTDFGNYSC 96
R K +L I + Q D Y C
Sbjct: 194 KREKKLSLHIADSQPGDSATYFC 216
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; 3.52A {Mus musculus}
Length = 254
Score = 28.1 bits (63), Expect = 0.50
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 12/56 (21%)
Query: 4 MSWYQDT------FLI------EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSC 47
+ WY+ LI + R G + TL+I +V++ DFG Y C
Sbjct: 169 LHWYRQKSHESPRLLIKYASQSIFGIPSRFSGSGSGTEFTLSINSVETEDFGIYFC 224
Score = 27.3 bits (61), Expect = 1.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
G + TL+I +V++ DFG Y C
Sbjct: 204 GTEFTLSINSVETEDFGIYFC 224
>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4;
immunoglobulin variable domain-like beta-sandwich,
homodimer, immune system; 2.00A {Mus musculus} SCOP:
b.1.1.1
Length = 117
Score = 27.7 bits (61), Expect = 0.50
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 15/59 (25%)
Query: 4 MSWYQD-------------TFLIEPSVSDRRLM--ETRGNKHTLTIKNVQSTDFGNYSC 47
++ + T D ++ LTI+ +++ D G Y C
Sbjct: 34 VTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTGLYLC 92
Score = 26.5 bits (58), Expect = 1.4
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
++ LTI+ +++ D G Y C
Sbjct: 72 ESRVNLTIQGLRAVDTGLYLC 92
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region;
superagonist peptide T-cell vaccines, transmembrane,
immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D
2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D*
3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 28.0 bits (62), Expect = 0.53
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 14/63 (22%)
Query: 6 WY-QD-----TFLI-----EPSVSDRRLMET--RGNKH-TLTIKNVQSTDFGNYSCVADN 51
W+ QD T L+ + + RL + + + TL I Q D Y C
Sbjct: 34 WFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRP 93
Query: 52 NLG 54
G
Sbjct: 94 TSG 96
Score = 26.5 bits (58), Expect = 1.9
Identities = 8/24 (33%), Positives = 8/24 (33%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLG 103
TL I Q D Y C G
Sbjct: 73 TLYIAASQPGDSATYLCAVRPTSG 96
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen
complex, HIV inhibiting antibody; 1.89A {Mus musculus}
PDB: 1jp5_A
Length = 247
Score = 28.0 bits (63), Expect = 0.61
Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 12/56 (21%)
Query: 4 MSWYQD------TFLI------EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSC 47
+ WY LI V DR G TL I V++ D G Y C
Sbjct: 38 LEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYC 93
Score = 26.5 bits (59), Expect = 2.2
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 66 VSDRRLMETRGNKHTLTIKNVQSTDFGNYSC 96
V DR G TL I V++ D G Y C
Sbjct: 63 VPDRFSGSGSGTDFTLKISRVEAEDLGIYYC 93
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 28.1 bits (62), Expect = 0.61
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 14/63 (22%)
Query: 4 MSWY-QD-----TFLI-----EPSVSDRRLMET--RGNKH-TLTIKNVQSTDFGNYSCVA 49
+ WY Q+ LI E RL T K +L I ++ D +Y C
Sbjct: 32 LQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCAT 91
Query: 50 DNN 52
D
Sbjct: 92 DTT 94
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 27.9 bits (61), Expect = 0.70
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 5 SWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA-KKYMELS 63
W Q + + + + ++ +R + + N D G Y C+ G Y EL
Sbjct: 198 LWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELV 257
Query: 64 V 64
V
Sbjct: 258 V 258
Score = 26.0 bits (56), Expect = 3.6
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 7/81 (8%)
Query: 30 HTLTIKNVQST--DFGNYSCVADNNLGRAKKYMELSVSVSDRRLMETRGNKH-----TLT 82
H L I+NV+ F + C A + + V D L E + +
Sbjct: 167 HFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFN 226
Query: 83 IKNVQSTDFGNYSCVADNNLG 103
+ N D G Y C+ G
Sbjct: 227 VVNTTKRDAGKYRCMIRTEGG 247
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 27.2 bits (61), Expect = 0.70
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 13/67 (19%)
Query: 4 MSWY-QD-----TFLI-------EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVAD 50
+ W+ Q+ L E R TL I++ Q D G Y C A+
Sbjct: 32 VQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAE 91
Query: 51 NNLGRAK 57
+ G +
Sbjct: 92 ASSGSWQ 98
Score = 25.7 bits (57), Expect = 3.0
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 70 RLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAK 106
R TL I++ Q D G Y C A+ + G +
Sbjct: 62 AFDSERARYSTLHIRDAQLEDSGTYFCAAEASSGSWQ 98
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 27.8 bits (61), Expect = 0.70
Identities = 9/72 (12%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFG-NYSCVADNNLGRAKKYMEL 62
+ ++ + + + T D N+SC+A +L + +
Sbjct: 123 LFLFRGNETLHYETFGKAAPAPQEATATFNST-ADREDGHRNFSCLAVLDLM--SRGGNI 179
Query: 63 SVSVSDRRLMET 74
S +++E
Sbjct: 180 FHKHSAPKMLEI 191
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune
system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A*
3uyp_A* 3uzv_B 1dzb_A
Length = 253
Score = 27.6 bits (62), Expect = 0.87
Identities = 14/56 (25%), Positives = 18/56 (32%), Gaps = 12/56 (21%)
Query: 4 MSWYQ------------DTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSC 47
M WYQ +E + R TLTI V++ D Y C
Sbjct: 169 MHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFC 224
Score = 26.1 bits (58), Expect = 2.9
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
TLTI V++ D Y C
Sbjct: 204 RTDFTLTINPVEADDVATYFC 224
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune
system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 229
Score = 27.7 bits (62), Expect = 0.88
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 18/64 (28%)
Query: 4 MSWYQD------TFLIE------PSVSDR----RLMETRGNKHTLTIKNVQSTDFGNYSC 47
++WY+ TF+ P D + N L I D G+Y C
Sbjct: 35 INWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDI--DIAKNLAVLKILAPSERDEGSYYC 92
Query: 48 VADN 51
D
Sbjct: 93 ACDT 96
Score = 25.7 bits (57), Expect = 3.3
Identities = 8/25 (32%), Positives = 9/25 (36%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVADN 100
N L I D G+Y C D
Sbjct: 72 KNLAVLKILAPSERDEGSYYCACDT 96
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 27.5 bits (60), Expect = 0.91
Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 4 MSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLG 54
+ + ++ + E T T+ + N+SC + +L
Sbjct: 121 VVLLRGEKELKREPAVGEPAEV-----TTTVLVRRDHHGANFSCRTELDLR 166
Score = 26.0 bits (56), Expect = 3.0
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLG 103
T T+ + N+SC + +L
Sbjct: 143 TTTVLVRRDHHGANFSCRTELDLR 166
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 27.1 bits (59), Expect = 0.95
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 32 LTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDR 69
L + V D G+Y C A+ + + ++ V+D
Sbjct: 75 LHFEPVLPNDNGSYRCSANFQSNLIESH-STTLYVTDV 111
Score = 26.3 bits (57), Expect = 1.7
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 81 LTIKNVQSTDFGNYSCVADNNLG 103
L + V D G+Y C A+
Sbjct: 75 LHFEPVLPNDNGSYRCSANFQSN 97
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized
SCFV), SCFV, monovalent antibo antibody engineering,
immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Length = 276
Score = 27.3 bits (61), Expect = 1.0
Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 12/63 (19%)
Query: 4 MSWYQ------------DTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN 51
++WYQ + V R G TLTI ++Q DF Y C
Sbjct: 44 VAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQHY 103
Query: 52 NLG 54
Sbjct: 104 TTP 106
Score = 24.6 bits (54), Expect = 8.2
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVADNNLG 103
G TLTI ++Q DF Y C
Sbjct: 79 GTDFTLTISSLQPEDFATYYCQQHYTTP 106
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 27.1 bits (59), Expect = 1.0
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 32 LTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDR 69
L K + +D G+YSC + N + +++ V +R
Sbjct: 81 LHFKPIHLSDNGSYSCSTNFNSQVINSH-SVTIHVRER 117
Score = 26.8 bits (58), Expect = 1.5
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 81 LTIKNVQSTDFGNYSCVADNNLG 103
L K + +D G+YSC + N
Sbjct: 81 LHFKPIHLSDNGSYSCSTNFNSQ 103
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F
membrane, envelope protein, fusion protein, membrane,
trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Length = 280
Score = 27.3 bits (61), Expect = 1.1
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 12/56 (21%)
Query: 4 MSWYQ------------DTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSC 47
+W Q +S+R GN +LTI +Q D +Y C
Sbjct: 173 AAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYC 228
Score = 25.7 bits (57), Expect = 3.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 66 VSDRRLMETRGNKHTLTIKNVQSTDFGNYSC 96
+S+R GN +LTI +Q D +Y C
Sbjct: 198 ISERFSASRSGNTASLTITGLQPEDEADYYC 228
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 242
Score = 27.2 bits (61), Expect = 1.2
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 11/80 (13%)
Query: 1 MGMMSWYQDTFLIEPSVSDR----RLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRA 56
+ +S+ S + R + TLTI NV+ D Y C
Sbjct: 49 LVSISYDGTVRKESGIPSGKFEVDR--IPETSTSTLTIHNVEKQDIATYYCALWEAQQEL 106
Query: 57 KKYMEL-----SVSVSDRRL 71
K +++ + ++D++L
Sbjct: 107 GKKIKVFGPGTKLIITDKQL 126
Score = 24.9 bits (55), Expect = 6.5
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYM 109
+ TLTI NV+ D Y C K +
Sbjct: 77 TSTSTLTIHNVEKQDIATYYCALWEAQQELGKKI 110
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain
FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus}
SCOP: b.1.1.1 b.1.1.1
Length = 282
Score = 27.0 bits (60), Expect = 1.2
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 12/63 (19%)
Query: 4 MSWYQDT------FLI------EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN 51
M W+Q I V R G ++LTI +++ D Y C +
Sbjct: 193 MHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRS 252
Query: 52 NLG 54
+
Sbjct: 253 SYP 255
Score = 25.8 bits (57), Expect = 3.1
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 76 GNKHTLTIKNVQSTDFGNYSCVADNNLG 103
G ++LTI +++ D Y C ++
Sbjct: 228 GTSYSLTISRMEAEDAATYYCQQRSSYP 255
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 26.4 bits (58), Expect = 1.4
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVS 65
+ I + D G Y C N + L V
Sbjct: 76 VVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVL 110
>3ux9_B SCFV antibody; five helices, long loop connecting helix,
hydrophobic intera cytokine-immune system complex;
2.80A {Homo sapiens}
Length = 256
Score = 26.8 bits (60), Expect = 1.4
Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 12/61 (19%)
Query: 4 MSWYQ------------DTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADN 51
+SWYQ D V DR G +L I +QS D +Y C +
Sbjct: 36 VSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADYYCQVRD 95
Query: 52 N 52
N
Sbjct: 96 N 96
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 26.2 bits (58), Expect = 1.5
Identities = 4/41 (9%), Positives = 11/41 (26%), Gaps = 2/41 (4%)
Query: 9 DTFLI--EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSC 47
+ ++ + + + + D G Y C
Sbjct: 33 AWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQC 73
Score = 25.4 bits (56), Expect = 2.7
Identities = 4/28 (14%), Positives = 8/28 (28%)
Query: 69 RRLMETRGNKHTLTIKNVQSTDFGNYSC 96
+ + + + D G Y C
Sbjct: 46 DKEKDKEQDAAEFSFAVTNLEDAGTYQC 73
>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like
polypeptide 1; immunoglobulin domain, beta sheet,
polymorphism, immune system; 2.00A {Homo sapiens} PDB:
2h3n_A
Length = 116
Score = 26.4 bits (59), Expect = 1.5
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 22/63 (34%)
Query: 5 SWYQD------TFLI---------EPS-VSDR----RLMETRGNKHTLTIKNVQSTDFGN 44
WYQ FL+ + V R + + N+ L+I +Q D
Sbjct: 34 YWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSK--DVARNRGYLSISELQPEDEAM 91
Query: 45 YSC 47
Y C
Sbjct: 92 YYC 94
Score = 26.4 bits (59), Expect = 1.7
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
N+ L+I +Q D Y C
Sbjct: 74 RNRGYLSISELQPEDEAMYYC 94
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system;
2.88A {Mus musculus}
Length = 291
Score = 26.9 bits (60), Expect = 1.6
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 12/56 (21%)
Query: 4 MSWYQDT------FLI------EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSC 47
++WYQ LI E V DR G TLTI +VQ+ D Y C
Sbjct: 197 LAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYC 252
Score = 25.4 bits (56), Expect = 4.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
G TLTI +VQ+ D Y C
Sbjct: 232 GTDFTLTISSVQAEDLAVYYC 252
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm,
mouse IGG, zinc-finger, DNA-binding, RNA-binding,
tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC;
1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 26.7 bits (59), Expect = 1.8
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 4 MSWYQD---TFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN 52
SW+ D + + + T + L I + + + C ++
Sbjct: 39 FSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSA 90
>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds,
immune system; 2.70A {Homo sapiens}
Length = 126
Score = 26.1 bits (58), Expect = 2.2
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 22/64 (34%)
Query: 4 MSWYQD------TFLI---------EPS-VSDR----RLMETRGNKHTLTIKNVQSTDFG 43
+ WYQ FL+ + V R + + N+ L+I +Q D
Sbjct: 35 VYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSK--DVARNRGYLSISELQPEDEA 92
Query: 44 NYSC 47
Y C
Sbjct: 93 MYYC 96
Score = 25.0 bits (55), Expect = 5.6
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
N+ L+I +Q D Y C
Sbjct: 76 RNRGYLSISELQPEDEAMYYC 96
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV,
allergen, antimicrobial, bacteriolytic enzyme,
glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo
sapiens} PDB: 2znw_A*
Length = 242
Score = 26.4 bits (58), Expect = 2.4
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 6 WYQDTFLIEPSVSDRRLM--ETRGNKHTLTIKNVQSTDFGNYSC 47
Y + PS+ R + +T N++ L + +V + D Y C
Sbjct: 174 SYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYC 217
Score = 24.8 bits (54), Expect = 8.8
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 72 METRGNKHTLTIKNVQSTDFGNYSC 96
+T N++ L + +V + D Y C
Sbjct: 193 RDTSKNQYYLDLNSVTTEDTATYYC 217
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 26.4 bits (58), Expect = 2.4
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 11/94 (11%)
Query: 11 FLIEPSVSDRRLMETRGNKHTLT--IKNVQSTDFG-NYSCVADNNLGRAKKYMELSVSVS 67
FL P D ++ +T + +V D ++ D +
Sbjct: 5 FLFPPKPKDTLMI---SRTPEVTCVVVDVSHEDPEVKFNWYVDG-----VEVHNAKTKPR 56
Query: 68 DRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNN 101
+ + T LT+ + + Y C N
Sbjct: 57 EEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNK 90
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 26.1 bits (57), Expect = 2.4
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 15/69 (21%)
Query: 4 MSWY-QD-----TFLI-----EPSVSDRRLMETRGNKH----TLTIKNVQSTDFGNYSCV 48
+ WY Q L+ +P V E +K L +V +D Y C
Sbjct: 41 LFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHWSDSAVYFCA 100
Query: 49 ADNNLGRAK 57
+K
Sbjct: 101 VSAKGTGSK 109
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 26.1 bits (57), Expect = 2.7
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYM 60
+L I++ Q +D Y C A A+
Sbjct: 74 SLHIRDSQPSDSALYFCAASEQNNYAQGLT 103
Score = 26.1 bits (57), Expect = 2.7
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 80 TLTIKNVQSTDFGNYSCVADNNLGRAKKYM 109
+L I++ Q +D Y C A A+
Sbjct: 74 SLHIRDSQPSDSALYFCAASEQNNYAQGLT 103
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral
virus, virus-immune SYST complex; 30.00A {Mus musculus}
SCOP: i.6.1.1
Length = 438
Score = 26.0 bits (58), Expect = 2.8
Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 12/56 (21%)
Query: 4 MSWYQ------------DTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSC 47
M WYQ +E + DR TLTI V++ D Y C
Sbjct: 37 MHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEADDVATYYC 92
Score = 25.6 bits (57), Expect = 4.0
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 1 MGMMSWYQDTFLIEPSVSDRRLM--ETRGNKHTLTIKNVQSTDFGNYSCVADNNLGR 55
+ +S SV R + + N L + +++S D Y CV + G
Sbjct: 266 VATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGD 322
>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold,
toxin-immune system complex; 2.95A {Rattus norvegicus}
Length = 125
Score = 25.6 bits (57), Expect = 3.0
Identities = 8/61 (13%), Positives = 18/61 (29%), Gaps = 18/61 (29%)
Query: 4 MSWYQDT------FLI---------EPSVSDRRLMETRGNKH--TLTIKNVQSTDFGNYS 46
M WY+ + + + D R ++ +L ++ + Y
Sbjct: 37 MYWYRQDTGHELRLIFMSHGIRNVEKGDIPDGYKAS-RPSQENFSLILELATPSQTSVYF 95
Query: 47 C 47
C
Sbjct: 96 C 96
Score = 24.1 bits (53), Expect = 9.8
Identities = 3/17 (17%), Positives = 7/17 (41%)
Query: 80 TLTIKNVQSTDFGNYSC 96
+L ++ + Y C
Sbjct: 80 SLILELATPSQTSVYFC 96
>3g5b_A Netrin receptor UNC5B; ZU5, death domain, UPA, apoptosis,
developmental protein, glycoprotein, immunoglobulin
domain, membrane, phosphoprotein; 2.00A {Rattus
norvegicus}
Length = 405
Score = 26.0 bits (56), Expect = 3.2
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 37 VQSTDFGNYSCVADNNLGRAKKYMELSVSVSDRR 70
+ G Y ++ A K ++L++
Sbjct: 132 ILLDQLGTYVFTGESYSRSAVKRLQLAIFAPALC 165
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 25.4 bits (56), Expect = 3.6
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 58 KYMELSVSVSDRRLMET-RGNKH-TLTIKNVQSTDFGNYSCVADNNLGRA 105
+ E S+S R + G+K +L I ++ D G Y C G
Sbjct: 43 EGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVAGGYC 92
Score = 24.6 bits (54), Expect = 6.1
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 12/62 (19%)
Query: 4 MSWYQ------DTFLIEPSVSDRRLMET--RGNKH-TLTIKNVQSTDFGNYSCVADNNLG 54
WY+ + I R +ET G+K +L I ++ D G Y C G
Sbjct: 34 TCWYRKKSGEGNEESIS---KGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVAGG 90
Query: 55 RA 56
Sbjct: 91 YC 92
>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; HET: NAG; 3.14A {Mus musculus}
Length = 259
Score = 25.7 bits (57), Expect = 3.9
Identities = 14/56 (25%), Positives = 18/56 (32%), Gaps = 12/56 (21%)
Query: 4 MSWYQ------------DTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSC 47
+SWYQ + V R TLTI ++Q D Y C
Sbjct: 33 LSWYQQRPGNIPKLLIYRASNLHTGVPSRFSGSGSATGFTLTISSLQPEDIATYYC 88
Score = 24.6 bits (54), Expect = 9.0
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 76 GNKHTLTIKNVQSTDFGNYSC 96
TLTI ++Q D Y C
Sbjct: 68 ATGFTLTISSLQPEDIATYYC 88
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A
{Mus musculus} PDB: 3c60_A
Length = 200
Score = 25.4 bits (55), Expect = 4.4
Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 14/61 (22%)
Query: 6 WY-QD-----TFLI-----EPSVSDRRLMET--RGNKH-TLTIKNVQSTDFGNYSCVADN 51
WY Q L+ S R T +G L +VQ D Y C A++
Sbjct: 34 WYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHLQKTSVQEIDSAVYYCAANS 93
Query: 52 N 52
Sbjct: 94 G 94
>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system;
2.35A {Mus musculus} PDB: 2e7l_C
Length = 121
Score = 24.9 bits (55), Expect = 5.2
Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 16/60 (26%)
Query: 4 MSWYQDT------FLI---------EPSVSDRRLMETRGNKH-TLTIKNVQSTDFGNYSC 47
M WY+ + + + D ++ +LT+++ + Y C
Sbjct: 32 MYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASRPSQENFSLTLESATPSQTSVYFC 91
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 24.8 bits (54), Expect = 5.2
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKY---MELSVSVSDR 69
+ + N+Q D G Y CV + L V++
Sbjct: 82 RVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVTLEHH 123
Score = 24.4 bits (53), Expect = 8.4
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 80 TLTIKNVQSTDFGNYSCVADN 100
+ + N+Q D G Y CV
Sbjct: 82 RVRMVNLQVEDSGLYQCVIYQ 102
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, domain swapping, collagen
receptor, structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 24.6 bits (54), Expect = 6.6
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 14 EPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSC 47
+ S + E + I V T G+YSC
Sbjct: 47 DGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSC 80
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 24.5 bits (53), Expect = 7.0
Identities = 6/39 (15%), Positives = 14/39 (35%)
Query: 31 TLTIKNVQSTDFGNYSCVADNNLGRAKKYMELSVSVSDR 69
L I +++ D G+Y + ++ + R
Sbjct: 73 NLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQIYRR 111
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 24.3 bits (52), Expect = 7.5
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 3 MMSWYQDTFLIEPSVSDRRLMETRGNKHTLTIKNVQSTDFGNYSCVADNNLGRAKKYMEL 62
+++WY D G+ L+IK+ + D G+Y N G+
Sbjct: 49 ILNWYNDGPSWSNVSFSDIYGFDYGDF-ALSIKSAKLQDSGHYLLEITNTGGKVCN-KNF 106
Query: 63 SVSVSD 68
+ + D
Sbjct: 107 QLLILD 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.128 0.366
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,574,620
Number of extensions: 72644
Number of successful extensions: 1164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1132
Number of HSP's successfully gapped: 983
Length of query: 115
Length of database: 6,701,793
Length adjustment: 78
Effective length of query: 37
Effective length of database: 4,523,955
Effective search space: 167386335
Effective search space used: 167386335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)