BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3274
         (115 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LD7|A Chain A, Solution Structure Of The Msin3a Pah3-Sap30 Sid Complex
          Length = 94

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 57/69 (82%)

Query: 39  PDVDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVK 98
           P+VDL+QLQVNTLRRYK++FK+ +RPGLNKAQL E +  HFK+IPV EKD L+ F Y+V+
Sbjct: 20  PEVDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVEIVGCHFKSIPVNEKDTLTCFIYSVR 79

Query: 99  SNTNKLDQK 107
           ++ NK D K
Sbjct: 80  NDKNKSDLK 88


>pdb|2KDP|A Chain A, Solution Structure Of The Sap30 Zinc Finger Motif
          Length = 71

 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/24 (79%), Positives = 23/24 (95%)

Query: 3  ARHIYICEYHKCLIQSVRNKRRRK 26
          ARH+YIC+YHK LIQSVRN+R+RK
Sbjct: 46 ARHLYICDYHKNLIQSVRNRRKRK 69


>pdb|1K46|A Chain A, Crystal Structure Of The Type Iii Secretory Domain Of
           Yersinia Yoph Reveals A Domain-Swapped Dimer
 pdb|1M0V|A Chain A, Nmr Structure Of The Type Iii Secretory Domain Of Yersinia
           Yoph Complexed With The Skap-Hom Phospho-Peptide
           N-Acetyl- Depyddpf-Nh2
          Length = 136

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 72  AETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQK---NGNT 111
           A+T+L H   + + ++D       TVK N N  D +   NGN+
Sbjct: 56  AQTVLSHVANVVLTQEDTAKLLQSTVKHNLNNYDLRSVGNGNS 98


>pdb|1HUF|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Tyrosine
           Phosphatase Yoph From Yersinia Pestis
          Length = 140

 Score = 27.7 bits (60), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 72  AETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQK---NGNT 111
           A+T+L H   + + ++D       TVK N N  D +   NGN+
Sbjct: 61  AQTVLSHVANVVLTQEDTAKLLQSTVKHNLNNYDLRSVGNGNS 103


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,807,295
Number of Sequences: 62578
Number of extensions: 80303
Number of successful extensions: 188
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 6
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)