BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3274
(115 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q17Q39|SAP30_AEDAE Histone deacetylase complex subunit SAP30 homolog OS=Aedes aegypti
GN=AAEL000149 PE=3 SV=1
Length = 173
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 77/114 (67%), Positives = 99/114 (86%), Gaps = 1/114 (0%)
Query: 3 ARHIYICEYHKCLIQSVRNKRRRKDSEDDSNEND-ESPDVDLFQLQVNTLRRYKKYFKVT 61
ARHIYIC++HK IQ R KRRR+DSEDDSNE D + P+VDL+QLQVNTLRRYK+++KV+
Sbjct: 60 ARHIYICDFHKGRIQCARTKRRRRDSEDDSNETDTDLPEVDLYQLQVNTLRRYKRFYKVS 119
Query: 62 SRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKNGNTGENT 115
+RPG+NKAQL+ET++KHFKTIP+ EK++L++F Y VKSN+NKLDQKN + E T
Sbjct: 120 TRPGINKAQLSETIMKHFKTIPIKEKEILTYFIYMVKSNSNKLDQKNNTSNEAT 173
>sp|Q7PXY4|SAP30_ANOGA Histone deacetylase complex subunit SAP30 homolog OS=Anopheles
gambiae GN=AGAP001654 PE=3 SV=4
Length = 174
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 76/114 (66%), Positives = 97/114 (85%), Gaps = 1/114 (0%)
Query: 3 ARHIYICEYHKCLIQSVRNKRRRKDSEDDSNEND-ESPDVDLFQLQVNTLRRYKKYFKVT 61
ARHIYIC++HK IQ R KRRR+DSEDDSNE D + P+VDL+QLQVNTLRRYK+++KV+
Sbjct: 61 ARHIYICDFHKARIQCARTKRRRRDSEDDSNETDTDLPEVDLYQLQVNTLRRYKRFYKVS 120
Query: 62 SRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKNGNTGENT 115
+RP NKAQL+ET++KHFKTIP+ EK++L++F Y VKSN+NKLDQKN + E T
Sbjct: 121 TRPSSNKAQLSETIMKHFKTIPIKEKEILTYFIYMVKSNSNKLDQKNNASAEAT 174
>sp|Q29IK8|SAP30_DROPS Histone deacetylase complex subunit SAP30 homolog OS=Drosophila
pseudoobscura pseudoobscura GN=Sap30 PE=3 SV=1
Length = 173
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/117 (63%), Positives = 93/117 (79%), Gaps = 6/117 (5%)
Query: 3 ARHIYICEYHKCLIQSVRNKRRRKDSEDDSNEND----ESPDVDLFQLQVNTLRRYKKYF 58
A+HIYIC++HK IQSVR KRRRKDSEDDSNE D E PD L+QL V+TLRRYK++F
Sbjct: 59 AQHIYICDHHKERIQSVRTKRRRKDSEDDSNETDTDLHEFPD--LYQLSVSTLRRYKRHF 116
Query: 59 KVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKNGNTGENT 115
KV +R G+ +AQLA+T++KHFKTIP+ EK++++FF Y VK TNKLDQKNG + T
Sbjct: 117 KVQTRQGMKRAQLADTIMKHFKTIPIKEKEIITFFVYMVKMGTNKLDQKNGIGNDTT 173
>sp|Q9VXB3|SAP30_DROME Histone deacetylase complex subunit SAP30 homolog OS=Drosophila
melanogaster GN=Sap30 PE=1 SV=1
Length = 173
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 72/111 (64%), Positives = 91/111 (81%), Gaps = 6/111 (5%)
Query: 3 ARHIYICEYHKCLIQSVRNKRRRKDSEDDSNEND----ESPDVDLFQLQVNTLRRYKKYF 58
A+HIYIC++HK IQSVR KRRRKDSEDDSNE D E PD L+QL V+TLRRYK++F
Sbjct: 59 AQHIYICDHHKERIQSVRTKRRRKDSEDDSNETDTDLHEFPD--LYQLGVSTLRRYKRHF 116
Query: 59 KVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKNG 109
KV +R G+ +AQLA+T++KHFKTIP+ EK++++FF Y VK +NKLDQKNG
Sbjct: 117 KVQTRQGMKRAQLADTIMKHFKTIPIKEKEIITFFVYMVKMGSNKLDQKNG 167
>sp|Q28H91|SP30L_XENTR Histone deacetylase complex subunit SAP30L OS=Xenopus tropicalis
GN=sap30l PE=2 SV=1
Length = 181
Score = 145 bits (365), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 70/108 (64%), Positives = 92/108 (85%), Gaps = 3/108 (2%)
Query: 4 RHIYICEYHKCLIQSVRNKRRRKDSED--DSNEND-ESPDVDLFQLQVNTLRRYKKYFKV 60
RH+YIC++HK IQSVRNKR+RK S+D DS E++ + P+VDLFQLQVNTLRRYK+Y+K+
Sbjct: 66 RHLYICDFHKNYIQSVRNKRKRKTSDDGGDSPEHETDVPEVDLFQLQVNTLRRYKRYYKL 125
Query: 61 TSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKN 108
+RPGLNKAQLAET+ +HF+ IPV EK+ L++F Y VKSN ++LDQK+
Sbjct: 126 QTRPGLNKAQLAETVSRHFRNIPVNEKETLAYFIYMVKSNRSRLDQKS 173
>sp|Q2TAD4|S30LB_XENLA Histone deacetylase complex subunit SAP30L-B OS=Xenopus laevis
GN=sap30l-b PE=2 SV=1
Length = 181
Score = 145 bits (365), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 70/108 (64%), Positives = 92/108 (85%), Gaps = 3/108 (2%)
Query: 4 RHIYICEYHKCLIQSVRNKRRRKDSED--DSNEND-ESPDVDLFQLQVNTLRRYKKYFKV 60
RH+YIC++HK IQSVRNKR+RK S+D DS E++ + P+VDLFQLQVNTLRRYK+Y+K+
Sbjct: 66 RHLYICDFHKNYIQSVRNKRKRKTSDDGGDSPEHETDVPEVDLFQLQVNTLRRYKRYYKL 125
Query: 61 TSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKN 108
+RPGLNKAQLAET+ +HF+ IPV EK+ L++F Y VKSN ++LDQK+
Sbjct: 126 QTRPGLNKAQLAETVSRHFRNIPVNEKETLAYFIYMVKSNRSRLDQKS 173
>sp|A4FVD8|S30LA_XENLA Histone deacetylase complex subunit SAP30L-A OS=Xenopus laevis
GN=sap30l-a PE=2 SV=1
Length = 181
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/108 (64%), Positives = 92/108 (85%), Gaps = 3/108 (2%)
Query: 4 RHIYICEYHKCLIQSVRNKRRRKDSED--DSNEND-ESPDVDLFQLQVNTLRRYKKYFKV 60
RH+YIC++HK IQSVRNKR+RK S+D DS E++ + P+VDLFQLQVNTLRRYK+Y+K+
Sbjct: 66 RHLYICDFHKNYIQSVRNKRKRKTSDDGGDSPEHETDIPEVDLFQLQVNTLRRYKRYYKL 125
Query: 61 TSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKN 108
+RPGLNKAQLAET+ +HF+ IPV EK+ L++F Y VKSN ++LDQK+
Sbjct: 126 QTRPGLNKAQLAETVSRHFRNIPVNEKETLAYFIYMVKSNRSRLDQKS 173
>sp|Q5SQF8|SP30L_MOUSE Histone deacetylase complex subunit SAP30L OS=Mus musculus
GN=Sap30l PE=1 SV=1
Length = 182
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 90/108 (83%), Gaps = 3/108 (2%)
Query: 4 RHIYICEYHKCLIQSVRNKRRRKDSED--DSNENDES-PDVDLFQLQVNTLRRYKKYFKV 60
RH+YIC++HK IQSVRNKR+RK S+D DS E+D P+VDLFQLQVNTLRRYK+++K+
Sbjct: 68 RHLYICDFHKNFIQSVRNKRKRKASDDGGDSPEHDADIPEVDLFQLQVNTLRRYKRHYKL 127
Query: 61 TSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKN 108
+RPG NKAQLAET+ +HF+ IPV EK+ L++F Y VKSN ++LDQK+
Sbjct: 128 QTRPGFNKAQLAETVSRHFRNIPVNEKETLAYFIYMVKSNRSRLDQKS 175
>sp|Q9HAJ7|SP30L_HUMAN Histone deacetylase complex subunit SAP30L OS=Homo sapiens
GN=SAP30L PE=1 SV=1
Length = 183
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/109 (63%), Positives = 91/109 (83%), Gaps = 3/109 (2%)
Query: 3 ARHIYICEYHKCLIQSVRNKRRRKDSED--DSNEND-ESPDVDLFQLQVNTLRRYKKYFK 59
RH+YIC++HK IQSVRNKR+RK S+D DS E+D + P+VDLFQLQVNTLRRYK+++K
Sbjct: 68 VRHLYICDFHKNFIQSVRNKRKRKTSDDGGDSPEHDTDIPEVDLFQLQVNTLRRYKRHYK 127
Query: 60 VTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKN 108
+ +RPG NKAQLAET+ +HF+ IPV EK+ L++F Y VKSN ++LDQK+
Sbjct: 128 LQTRPGFNKAQLAETVSRHFRNIPVNEKETLAYFIYMVKSNKSRLDQKS 176
>sp|Q6NYV5|SP30L_DANRE Histone deacetylase complex subunit SAP30L OS=Danio rerio GN=sap30l
PE=2 SV=1
Length = 178
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/112 (59%), Positives = 90/112 (80%), Gaps = 3/112 (2%)
Query: 3 ARHIYICEYHKCLIQSVRNKRRRKDSEDDSNEND---ESPDVDLFQLQVNTLRRYKKYFK 59
RH+YIC++HK IQSVRNKR+RK S+D D E P+VDLFQLQVNTLRRYK+++K
Sbjct: 63 VRHLYICDFHKNFIQSVRNKRKRKTSDDGGESPDHEVEVPEVDLFQLQVNTLRRYKRHYK 122
Query: 60 VTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQKNGNT 111
+ +RPGLNKAQLAET+ +HF+ IPV EK+ L++F Y VKS+ ++LDQK+ ++
Sbjct: 123 IQTRPGLNKAQLAETVSRHFRNIPVNEKETLTYFIYMVKSSKSRLDQKSDSS 174
>sp|O75446|SAP30_HUMAN Histone deacetylase complex subunit SAP30 OS=Homo sapiens GN=SAP30
PE=1 SV=1
Length = 220
Score = 142 bits (357), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 66/109 (60%), Positives = 89/109 (81%), Gaps = 4/109 (3%)
Query: 3 ARHIYICEYHKCLIQSVRNKRRRKDSEDDSNEND----ESPDVDLFQLQVNTLRRYKKYF 58
ARH+YIC+YHK LIQSVRN+R+RK S+DD ++ ++P+VDL+QLQVNTLRRYK++F
Sbjct: 106 ARHLYICDYHKNLIQSVRNRRKRKGSDDDGGDSPVQDIDTPEVDLYQLQVNTLRRYKRHF 165
Query: 59 KVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQK 107
K+ +RPGLNKAQL E + HF++IPV EKD L++F Y+VK++ NK D K
Sbjct: 166 KLPTRPGLNKAQLVEIVGCHFRSIPVNEKDTLTYFIYSVKNDKNKSDLK 214
>sp|O88574|SAP30_MOUSE Histone deacetylase complex subunit SAP30 OS=Mus musculus GN=Sap30
PE=1 SV=1
Length = 220
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/109 (60%), Positives = 88/109 (80%), Gaps = 4/109 (3%)
Query: 3 ARHIYICEYHKCLIQSVRNKRRRKDSEDDSNEND----ESPDVDLFQLQVNTLRRYKKYF 58
ARH+YIC+YHK LIQSVRN+R+RK S+DD ++ ++P+VDL+QLQVNTLRRYK++F
Sbjct: 106 ARHLYICDYHKNLIQSVRNRRKRKGSDDDGGDSPVQDIDTPEVDLYQLQVNTLRRYKRHF 165
Query: 59 KVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTNKLDQK 107
K+ +RPGLNKAQL E + HFK+IPV EKD L+ F Y+V+++ NK D K
Sbjct: 166 KLPTRPGLNKAQLVEIVGCHFKSIPVNEKDTLTCFIYSVRNDKNKSDLK 214
>sp|Q9VW09|LTN1_DROME E3 ubiquitin-protein ligase listerin OS=Drosophila melanogaster
GN=l(3)76BDr PE=1 SV=2
Length = 1747
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 6 IYICEYHKCLIQSVRNKRRRKDSEDDSNENDESPDVDLFQLQVNTLRRYKKYF----KVT 61
+ + E LI +R+++++ +E N DE LF +VN L +K Y+ +V+
Sbjct: 1269 VAVYELFAALIDFIRSEKQKSSTELLKNMIDEWDS--LFAKEVN-LVLFKSYYLLTHEVS 1325
Query: 62 SRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTN 102
PG E LL+ PV+E+ SF + KSN+N
Sbjct: 1326 VDPGFQACY--EALLEQIT--PVIERLDYSFVYSFCKSNSN 1362
>sp|P38065|AP2A_YEAST AP-2 complex subunit alpha OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=APL3 PE=1 SV=1
Length = 1025
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 16/70 (22%)
Query: 55 KKYFKVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKS-------------NT 101
+KYF S P + KA + T++K +KT P + +V+ FF + S N
Sbjct: 588 EKYF---SAPNVAKAMILTTMIKLYKTSPEIGSNVIKFFQLELNSLDIELQTRSFEYLNI 644
Query: 102 NKLDQKNGNT 111
+L + NGNT
Sbjct: 645 IQLAKVNGNT 654
>sp|O14114|YEJJ_SCHPO Uncharacterized AAA domain-containing protein C31G5.19
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC31G5.19 PE=3 SV=1
Length = 1190
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 30 DDSNENDESPDVDLFQLQ-----VNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKTIPV 84
DD END F+ Q TLR YK F + R GL + L +L+ ++ + V
Sbjct: 579 DDPKEND-------FEYQQRLETFETLRIYKPRFLICGRKGLGQTALGPAILQQYEGVHV 631
Query: 85 VEKDVLSFF 93
D+ +
Sbjct: 632 QSFDMSTLL 640
>sp|Q7PCJ6|RPOC2_CHLRE DNA-directed RNA polymerase subunit beta'' OS=Chlamydomonas
reinhardtii GN=rpoC2 PE=2 SV=1
Length = 3120
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 2 KARHIYICEYHKCLIQSVRNKRRRKDSEDDSNENDESPDVDLFQLQVNTLRRYKKYFKVT 61
K +HI + E +K ++ V+NK+ R + D+D+ L+VN L R K K++
Sbjct: 1661 KLQHIVLTEQYKNNLRWVKNKKPRFLPK----------DIDINTLEVN-LDRIKPKNKLS 1709
Query: 62 SRPGLNKAQLAETLLKHFKTIPVVEKDV 89
+ + QL+ +LL+ KTI + D+
Sbjct: 1710 NLNPTQQLQLSNSLLEFVKTIKINPTDL 1737
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,669,466
Number of Sequences: 539616
Number of extensions: 1553015
Number of successful extensions: 6593
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 6557
Number of HSP's gapped (non-prelim): 46
length of query: 115
length of database: 191,569,459
effective HSP length: 83
effective length of query: 32
effective length of database: 146,781,331
effective search space: 4697002592
effective search space used: 4697002592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)