Query psy3274
Match_columns 115
No_of_seqs 96 out of 98
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 20:53:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3274.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3274hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ld7_A Histone deacetylase com 100.0 6.6E-39 2.3E-43 225.4 11.8 90 24-113 4-94 (94)
2 2kdp_A Histone deacetylase com 99.5 5.2E-15 1.8E-19 99.3 1.0 27 2-28 45-71 (71)
3 2do1_A Nuclear protein HCC-1; 92.6 0.25 8.5E-06 31.0 5.0 42 39-82 6-47 (55)
4 2rnn_A E3 SUMO-protein ligase 90.3 1 3.6E-05 32.1 6.8 58 41-100 35-98 (114)
5 1zrj_A E1B-55KDA-associated pr 90.3 0.79 2.7E-05 28.2 5.4 42 38-81 5-46 (50)
6 1h1j_S THO1 protein; SAP domai 88.3 1.1 3.7E-05 27.6 4.9 40 41-82 3-42 (51)
7 1jjr_A KU70, thyroid autoantig 85.5 0.96 3.3E-05 33.5 4.2 40 40-81 58-97 (151)
8 2kvu_A MKL/myocardin-like prot 84.2 2.4 8.2E-05 28.3 5.3 43 37-81 20-62 (75)
9 1y02_A CARP2, FYVE-ring finger 75.6 3.4 0.00012 29.2 4.1 38 42-79 75-112 (120)
10 1jjr_A KU70, thyroid autoantig 74.9 0.6 2.1E-05 34.6 0.0 37 42-80 114-150 (151)
11 1b0n_A Protein (SINR protein); 72.4 7.1 0.00024 24.6 4.7 57 46-102 42-110 (111)
12 1jey_A KU70; double-strand DNA 57.8 2.1 7.3E-05 36.6 0.0 37 42-80 572-608 (609)
13 2out_A MU-like prophage flumu 55.2 11 0.00036 27.6 3.3 39 39-77 85-123 (131)
14 4eqy_A Acyl-[acyl-carrier-prot 39.5 37 0.0013 25.5 4.4 51 45-95 223-275 (283)
15 2ktg_A Calmodulin, putative; e 36.6 62 0.0021 18.7 4.8 47 45-93 7-56 (85)
16 2jns_A Bromodomain-containing 35.3 28 0.00096 22.8 2.7 22 37-58 58-79 (90)
17 2jnf_A Troponin C; stretch act 34.5 88 0.003 19.8 5.3 46 42-89 3-52 (158)
18 3lfp_A CSP231I C protein; tran 34.2 30 0.001 21.5 2.7 50 46-96 45-94 (98)
19 3ivp_A Putative transposon-rel 33.0 56 0.0019 21.2 4.0 57 46-102 52-114 (126)
20 1avs_A Troponin C; muscle cont 31.0 84 0.0029 18.5 5.1 47 45-93 13-62 (90)
21 1owf_B IHF-beta, integration H 30.9 50 0.0017 21.1 3.4 34 66-99 1-35 (94)
22 3j20_F 30S ribosomal protein S 29.4 15 0.0005 29.0 0.6 24 80-106 40-63 (236)
23 2kgr_A Intersectin-1; structur 28.3 1.2E+02 0.0041 19.4 5.6 31 46-76 8-41 (111)
24 1a62_A RHO; transcription term 23.9 92 0.0031 21.7 3.9 36 42-77 5-40 (130)
25 3j04_B Myosin regulatory light 23.5 1.4E+02 0.0047 18.4 5.8 31 47-77 2-35 (143)
26 4ds7_A Calmodulin, CAM; protei 22.6 1.4E+02 0.0048 18.3 5.0 42 46-89 5-49 (147)
27 2joj_A Centrin protein; N-term 22.3 1.1E+02 0.0038 17.0 4.1 45 47-93 2-49 (77)
28 1wdc_B Scallop myosin; calcium 22.0 1.6E+02 0.0054 18.6 5.4 45 43-89 9-56 (156)
29 1exe_A Transcription factor 1; 21.6 1.1E+02 0.0039 19.7 3.9 33 66-99 1-34 (99)
30 4aeq_A Colicin-M immunity prot 21.5 44 0.0015 23.1 1.8 27 55-81 4-30 (98)
31 1b8z_A Protein (histonelike pr 21.4 85 0.0029 19.7 3.1 33 66-99 1-34 (90)
32 3i5g_B Myosin regulatory light 21.4 1.9E+02 0.0064 19.2 5.5 44 45-90 9-55 (153)
33 3amj_B Zinc peptidase inactive 20.7 1.1E+02 0.0037 23.0 4.0 43 42-84 168-216 (424)
34 1mul_A NS2, HU-2, DNA binding 20.6 88 0.003 19.7 3.1 33 66-99 1-34 (90)
35 3hdi_A Processing protease; CA 20.5 86 0.0029 23.6 3.4 44 41-85 161-210 (421)
36 2mys_B Myosin; muscle protein, 20.4 1.8E+02 0.006 18.6 5.3 36 43-78 16-54 (166)
No 1
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=100.00 E-value=6.6e-39 Score=225.40 Aligned_cols=90 Identities=53% Similarity=0.816 Sum_probs=86.4
Q ss_pred cCCCCCCCCCCCC-CCCccCcccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhhhcCCCCChHHHHHHHHHHHhhCCc
Q psy3274 24 RRKDSEDDSNEND-ESPDVDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTN 102 (115)
Q Consensus 24 ~~~~s~~~s~~~d-~~p~vDf~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kHF~s~pV~E~evI~~Fiy~VK~~k~ 102 (115)
+-|+|++||+++| +.|+|||++|+++|||||+++|+|+++|+++|+|||++|++||+++||+|+|||++|||+||++++
T Consensus 4 ~~~~~~~~~~~~~~~~p~vdf~kL~~~tLrrY~r~y~L~~~~~~sK~qLa~aV~kHF~s~~VdE~evI~~Fly~VK~~~~ 83 (94)
T 2ld7_A 4 GSDDDGGDSPVQDIDTPEVDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVEIVGCHFKSIPVNEKDTLTCFIYSVRNDKN 83 (94)
T ss_dssp SCCSCSSSSCSCSSCCCCCCCSSSCHHHHHHHHHHTTCCCCSSCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCSS
T ss_pred CcccccCCCCcccCCCCCcCHHHCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCc
Confidence 4568999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCC
Q psy3274 103 KLDQKNGNTGE 113 (115)
Q Consensus 103 Kfd~k~~~~~~ 113 (115)
||+||+|++++
T Consensus 84 kf~~~~~~~~~ 94 (94)
T 2ld7_A 84 KSDLKADSGVH 94 (94)
T ss_dssp CCCCCCCSCCC
T ss_pred cccCcCCCCCC
Confidence 99999998753
No 2
>2kdp_A Histone deacetylase complex subunit SAP30; SIN3, zinc finger motif, nucleic acid interaction, nucleus, repressor, transcription; NMR {Homo sapiens}
Probab=99.47 E-value=5.2e-15 Score=99.35 Aligned_cols=27 Identities=74% Similarity=1.261 Sum_probs=25.8
Q ss_pred CccceeecccchhhhHHhhhhccCCCC
Q psy3274 2 KARHIYICEYHKCLIQSVRNKRRRKDS 28 (115)
Q Consensus 2 ~a~h~yicd~hk~~iqs~r~~r~~~~s 28 (115)
+|+|||||||||++|||||++|+||+|
T Consensus 45 ~a~HiYICd~HK~~iqs~Rskr~rk~s 71 (71)
T 2kdp_A 45 SARHLYICDYHKNLIQSVRNRRKRKGS 71 (71)
T ss_dssp TCSCCCCCHHHHHHHHTTSSSCSCSCC
T ss_pred CCcEEEehhhhhhhhhhhhhhhhhcCC
Confidence 699999999999999999999999976
No 3
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=92.61 E-value=0.25 Score=31.04 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=36.9
Q ss_pred CccCcccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhhhcCC
Q psy3274 39 PDVDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKTI 82 (115)
Q Consensus 39 p~vDf~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kHF~s~ 82 (115)
-.+|+++|.+.-|+...+..+|++. -+|++|++-|+.||..-
T Consensus 6 ~~~~l~klkV~eLK~~L~~rGL~~~--G~KaeLieRL~~~l~~~ 47 (55)
T 2do1_A 6 SGVELHKLKLAELKQECLARGLETK--GIKQDLIHRLQAYLEEH 47 (55)
T ss_dssp CCCCTTTSCHHHHHHHHHHHTCCCC--SCHHHHHHHHHHHHHHT
T ss_pred cccCHHHCcHHHHHHHHHHcCCCCC--CcHHHHHHHHHHHHhcC
Confidence 4679999999999999999999653 47999999999999765
No 4
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=90.28 E-value=1 Score=32.12 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=46.7
Q ss_pred cCcccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhhhcCCCC----C--hHHHHHHHHHHHhhC
Q psy3274 41 VDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKTIPV----V--EKDVLSFFFYTVKSN 100 (115)
Q Consensus 41 vDf~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kHF~s~pV----~--E~evI~~Fiy~VK~~ 100 (115)
..+.+|.++-|+.+.+..+|. ..-.|++|.+-|..||..... + -...|...||++...
T Consensus 35 ~~l~kLtVaELK~~cr~~GL~--~sGkKaeLi~RI~~yl~~~~~~g~~D~~rl~ai~~lI~~~~~g 98 (114)
T 2rnn_A 35 TLMELLKVSELKDICRSVSFP--VSGRKAVLQDLIRNFLQNALVVGKSDPYRVQAVKFLIERIRKN 98 (114)
T ss_dssp HHHTTCCHHHHHHHHHHTTCC--TTSCHHHHHHHHHHHHHHTTCTTCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHcCCC--cCCcHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHhcC
Confidence 358899999999999999985 445699999999999987543 2 236677899999863
No 5
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=90.26 E-value=0.79 Score=28.18 Aligned_cols=42 Identities=31% Similarity=0.284 Sum_probs=36.4
Q ss_pred CCccCcccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhhhcC
Q psy3274 38 SPDVDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKT 81 (115)
Q Consensus 38 ~p~vDf~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kHF~s 81 (115)
...+|+++|.+.-|+...+..+|++ .-+|++|++-++.+...
T Consensus 5 ~s~~~~~klkV~eLK~eLk~RgL~~--~G~Ka~Li~RL~~~~~~ 46 (50)
T 1zrj_A 5 SSGMDVRRLKVNELREELQRRGLDT--RGLKAELAERLQAALSG 46 (50)
T ss_dssp SCCCCGGGSCHHHHHHHHHHTTCCC--CSCHHHHHHHHHHHHCC
T ss_pred cCcCCHHHCcHHHHHHHHHHcCCCC--CCcHHHHHHHHHHHHhc
Confidence 4578999999999999999999965 45599999999998764
No 6
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=88.27 E-value=1.1 Score=27.64 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=34.9
Q ss_pred cCcccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhhhcCC
Q psy3274 41 VDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKTI 82 (115)
Q Consensus 41 vDf~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kHF~s~ 82 (115)
.|+++|.+.-|+...+..+|++ .-+|++|++-+..|+...
T Consensus 3 ~~~~kltV~eLK~~Lk~RGL~~--~G~KadLieRL~~~~~~~ 42 (51)
T 1h1j_S 3 ADYSSLTVVQLKDLLTKRNLSV--GGLKNELVQRLIKDDEES 42 (51)
T ss_dssp CSGGGCCHHHHHHHHHHTTCCC--CSSHHHHHHHHHHHHHHS
T ss_pred chHHHCcHHHHHHHHHHcCCCC--CCcHHHHHHHHHHHHHhc
Confidence 4899999999999999999965 456999999999998753
No 7
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=85.50 E-value=0.96 Score=33.48 Aligned_cols=40 Identities=30% Similarity=0.449 Sum_probs=35.1
Q ss_pred ccCcccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhhhcC
Q psy3274 40 DVDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKT 81 (115)
Q Consensus 40 ~vDf~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kHF~s 81 (115)
.-.|.+|.++.|+-|.+.++|. ....|++|++.|..||..
T Consensus 58 ~g~L~kltV~eLK~~l~~~gL~--~~GkKadLI~Ri~~~l~~ 97 (151)
T 1jjr_A 58 KGTLGKFTVPMLKEACRAYGLK--SGLKKQELLEALTKHFQD 97 (151)
T ss_dssp HTCTTSSCHHHHHHHHHHHTCC--CCSSSHHHHHHHHHTTCC
T ss_pred cCcHHhccHHHHHHHHHHcCCC--CcccHHHHHHHHHHHHhh
Confidence 4588999999999999999875 456699999999999976
No 8
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=84.25 E-value=2.4 Score=28.25 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=36.2
Q ss_pred CCCccCcccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhhhcC
Q psy3274 37 ESPDVDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKT 81 (115)
Q Consensus 37 ~~p~vDf~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kHF~s 81 (115)
+..+.|+++|.+.-|+...+..+|++. -+|++|++-++.++..
T Consensus 20 g~l~~~l~klkVaeLK~eLk~RGL~~s--G~KaeLIeRL~~~~~~ 62 (75)
T 2kvu_A 20 GALPANLDDMKVAELKQELKLRSLPVS--GTKTELIERLRAYQDQ 62 (75)
T ss_dssp SSCCTTTTTSCHHHHHHHHHHTTCCCC--SCHHHHHHHHHHHHHT
T ss_pred ccchHHHHHCcHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHHc
Confidence 345569999999999999999999554 4599999999999764
No 9
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=75.57 E-value=3.4 Score=29.18 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=34.8
Q ss_pred CcccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhhh
Q psy3274 42 DLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHF 79 (115)
Q Consensus 42 Df~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kHF 79 (115)
++-+|....|+.|-.-.++++..-.-|+||++.|-.|=
T Consensus 75 ~l~~lkvkdL~~yL~~~~I~~~~c~EKedLv~lvl~~~ 112 (120)
T 1y02_A 75 ELMKMKVKDLRDYLSLHDISTEMCREKEELVLLVLGQQ 112 (120)
T ss_dssp HHHTSCHHHHHHHHHHTTCCCTTCCSHHHHHHHHHHTC
T ss_pred HHhcccHHHHHHHHHhCCCCcccceeHHHHHHHHHhcC
Confidence 56678899999999999999999999999999999986
No 10
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=74.95 E-value=0.6 Score=34.59 Aligned_cols=37 Identities=32% Similarity=0.511 Sum_probs=0.0
Q ss_pred CcccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhhhc
Q psy3274 42 DLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFK 80 (115)
Q Consensus 42 Df~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kHF~ 80 (115)
.|++|.+..|+-|.+.++|. .+..|++|++.|..||.
T Consensus 114 ~l~klTV~~Lk~~l~~~gl~--~~GkKaeLieRi~~~~~ 150 (151)
T 1jjr_A 114 TLGKFTVPMLKEACRAYGLK--SGLKKQELLEALTKHFQ 150 (151)
T ss_dssp ---------------------------------------
T ss_pred ccccccHHHHHHHHHHcCCC--CCCcHHHHHHHHHHHhc
Confidence 78889999999999999874 55679999999999984
No 11
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=72.42 E-value=7.1 Score=24.62 Aligned_cols=57 Identities=9% Similarity=0.053 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHhcCCCCC-----C------CCCHHHHHHHHHhhh-cCCCCChHHHHHHHHHHHhhCCc
Q psy3274 46 LQVNTLRRYKKYFKVTSR-----P------GLNKAQLAETLLKHF-KTIPVVEKDVLSFFFYTVKSNTN 102 (115)
Q Consensus 46 L~~~tLrRYkr~f~L~~~-----p------~~sK~QLa~~V~kHF-~s~pV~E~evI~~Fiy~VK~~k~ 102 (115)
.+.++|.+..+.|+++.. . .....+....+..+| ..++-.|.+.|..||-.++...+
T Consensus 42 p~~~~l~~ia~~l~v~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~e~~~~i~~~i~~l~~~~k 110 (111)
T 1b0n_A 42 PSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLDYQKWRKSQKE 110 (111)
T ss_dssp CCHHHHHHHHHHHTCCHHHHHCCTTCC-----CCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHCcCHHHHhcCCCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccc
Confidence 467788999998887531 1 112256777888899 88999999999999999887765
No 12
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=57.76 E-value=2.1 Score=36.56 Aligned_cols=37 Identities=32% Similarity=0.511 Sum_probs=0.0
Q ss_pred CcccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhhhc
Q psy3274 42 DLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFK 80 (115)
Q Consensus 42 Df~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kHF~ 80 (115)
.|++|+++.|+.|.+.++|. .+..|++|++.|..||.
T Consensus 572 ~l~~~tv~~Lk~~l~~~~~~--~~~kK~~li~~i~~~~~ 608 (609)
T 1jey_A 572 TLGKFTVPMLKEACRAYGLK--SGLKKQELLEALTKHFQ 608 (609)
T ss_dssp ---------------------------------------
T ss_pred CchhccHHHHHHHHHHcCCC--CCCcHHHHHHHHHHHhc
Confidence 46779999999999999874 56779999999999984
No 13
>2out_A MU-like prophage flumu protein GP35, protein HI1507 in MU-like prophage flumu region...; structural genomics, hypothetical protein; NMR {Haemophilus influenzae} SCOP: a.140.3.2 d.344.1.1
Probab=55.15 E-value=11 Score=27.59 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=35.6
Q ss_pred CccCcccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHh
Q psy3274 39 PDVDLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLK 77 (115)
Q Consensus 39 p~vDf~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~k 77 (115)
.+.||+.|.++-|+.+-+.-++....+..|+||+..+..
T Consensus 85 ~~~~l~~lTV~ELKa~Lde~gIe~~ssakKaELiaLL~~ 123 (131)
T 2out_A 85 PSTDLNTFTVEQLKAQLTERGITFKQSATKAELIALFAP 123 (131)
T ss_dssp CCCSSTTCCSHHHHHHHHHHTCCCSSSCCSHHHHHHCCS
T ss_pred ccCccccccHHHHHHHHHHcCCcccccCCHHHHHHHHHH
Confidence 478999999999999999999999999999999987653
No 14
>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}
Probab=39.46 E-value=37 Score=25.49 Aligned_cols=51 Identities=8% Similarity=0.043 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhhhcCCCCC--hHHHHHHHHH
Q psy3274 45 QLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKTIPVV--EKDVLSFFFY 95 (115)
Q Consensus 45 kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kHF~s~pV~--E~evI~~Fiy 95 (115)
.++.+.+...++.|++-.+.+.+-+|.++.+.+.+...|-. |.+-|..||-
T Consensus 223 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 275 (283)
T 4eqy_A 223 GFSPDAISALRSAYRILYKNSLSLEEAKVQLSELAQAGGDGDAAVKALVDFVE 275 (283)
T ss_dssp TCCHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTSSSTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccCCchHHHHHHHHHHHh
Confidence 36677777777777776677788899999999988766643 8888888884
No 15
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=36.56 E-value=62 Score=18.65 Aligned_cols=47 Identities=13% Similarity=0.225 Sum_probs=32.1
Q ss_pred cCCHHHHHHHHHhcCC-CCC-C-CCCHHHHHHHHHhhhcCCCCChHHHHHHH
Q psy3274 45 QLQVNTLRRYKKYFKV-TSR-P-GLNKAQLAETLLKHFKTIPVVEKDVLSFF 93 (115)
Q Consensus 45 kL~~~tLrRYkr~f~L-~~~-p-~~sK~QLa~~V~kHF~s~pV~E~evI~~F 93 (115)
+|+.+.+..++..|.+ +.. . -+++++|..++... +.++.+.++-.-|
T Consensus 7 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~--g~~~~~~~~~~~~ 56 (85)
T 2ktg_A 7 VLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRAL--GANPTKQKISEIV 56 (85)
T ss_dssp SSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTT--SSCCCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHh--CCCCCHHHHHHHH
Confidence 4677778888888876 332 2 38899999998875 4566666654444
No 16
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=35.28 E-value=28 Score=22.83 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=18.0
Q ss_pred CCCccCcccCCHHHHHHHHHhc
Q psy3274 37 ESPDVDLFQLQVNTLRRYKKYF 58 (115)
Q Consensus 37 ~~p~vDf~kL~~~tLrRYkr~f 58 (115)
+..++||..|+..|||+-.+..
T Consensus 58 dEIEiDid~L~~~TL~~L~~yV 79 (90)
T 2jns_A 58 DEIEIDFETLKPSTLRELERYV 79 (90)
T ss_dssp TSCCCCTTTSCHHHHHHHHHHH
T ss_pred CeEEEeccCCCHHHHHHHHHHH
Confidence 4578999999999999876543
No 17
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=34.50 E-value=88 Score=19.77 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=28.8
Q ss_pred CcccCCHHHHHHHHHhcCC-C-CCC--CCCHHHHHHHHHhhhcCCCCChHHH
Q psy3274 42 DLFQLQVNTLRRYKKYFKV-T-SRP--GLNKAQLAETLLKHFKTIPVVEKDV 89 (115)
Q Consensus 42 Df~kL~~~tLrRYkr~f~L-~-~~p--~~sK~QLa~~V~kHF~s~pV~E~ev 89 (115)
++..|+...+.+++..|.. + ... .++.+||..++..- +.++.+.++
T Consensus 3 ~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~--~~~~~~~~~ 52 (158)
T 2jnf_A 3 DVSKLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVL--GIQQTKSTI 52 (158)
T ss_dssp CSTTSCHHHHHHHHHHHHHSBCSSSCSSEEHHHHHHHHHHT--TCSCSHHHH
T ss_pred chhhCCHHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHHHh--CCCCCHHHH
Confidence 3456777778888877765 4 332 37788888877662 344444443
No 18
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=34.17 E-value=30 Score=21.54 Aligned_cols=50 Identities=10% Similarity=0.145 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhhhcCCCCChHHHHHHHHHH
Q psy3274 46 LQVNTLRRYKKYFKVTSRPGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYT 96 (115)
Q Consensus 46 L~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~kHF~s~pV~E~evI~~Fiy~ 96 (115)
.+.++|.+..+.|+++...-..-++-...+...|..++-.+.+.| .||-.
T Consensus 45 p~~~~l~~la~~l~v~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~-~~l~~ 94 (98)
T 3lfp_A 45 PDFEMANRLAKVLKIPVSYLYTPEDDLAQIILTWNELNEQERKRI-NFYIR 94 (98)
T ss_dssp CCHHHHHHHHHHHTSCGGGGGCCCHHHHHHHHHHTTCCHHHHHHH-HHHHT
T ss_pred CCHHHHHHHHHHHCcCHHHHhCCChhHHHHHHHHHhCCHHHHHHH-HHHHH
Confidence 467788888888887543211111223446678999999999999 88764
No 19
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=33.04 E-value=56 Score=21.16 Aligned_cols=57 Identities=7% Similarity=0.045 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHhcCCCCC------CCCCHHHHHHHHHhhhcCCCCChHHHHHHHHHHHhhCCc
Q psy3274 46 LQVNTLRRYKKYFKVTSR------PGLNKAQLAETLLKHFKTIPVVEKDVLSFFFYTVKSNTN 102 (115)
Q Consensus 46 L~~~tLrRYkr~f~L~~~------p~~sK~QLa~~V~kHF~s~pV~E~evI~~Fiy~VK~~k~ 102 (115)
.+.++|.+..+.|+++.. ...........+..-+..++-.+.+.|..||-.+...+.
T Consensus 52 p~~~~l~~ia~~l~v~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~i~~~i~~l~~~~~ 114 (126)
T 3ivp_A 52 PSLQVLYDLVSLLNVSVDEFFLPASSQVKSTKRRQLENKIDNFTDADLVIMESVADGIVKSKE 114 (126)
T ss_dssp CCHHHHHHHHHHHTCCSHHHHSCCCCCCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCcCHHHHhCCCccccchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 578899999999988642 122344566677778889999999999999988876554
No 20
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=30.95 E-value=84 Score=18.47 Aligned_cols=47 Identities=9% Similarity=0.171 Sum_probs=32.7
Q ss_pred cCCHHHHHHHHHhcCC-CCCC--CCCHHHHHHHHHhhhcCCCCChHHHHHHH
Q psy3274 45 QLQVNTLRRYKKYFKV-TSRP--GLNKAQLAETLLKHFKTIPVVEKDVLSFF 93 (115)
Q Consensus 45 kL~~~tLrRYkr~f~L-~~~p--~~sK~QLa~~V~kHF~s~pV~E~evI~~F 93 (115)
+|+.+.+.+++..|.+ +... -+++++|..++... +.++.+.++-.-|
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~--g~~~~~~~~~~l~ 62 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRML--GQNPTKEELDAII 62 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHT--TCCCCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHh--CCCCCHHHHHHHH
Confidence 3677778888888876 4332 38999999999874 4566766654443
No 21
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=30.91 E-value=50 Score=21.10 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHhhhcCCCCChH-HHHHHHHHHHhh
Q psy3274 66 LNKAQLAETLLKHFKTIPVVEK-DVLSFFFYTVKS 99 (115)
Q Consensus 66 ~sK~QLa~~V~kHF~s~pV~E~-evI~~Fiy~VK~ 99 (115)
++|.||++.|.+...+++-.+. .+|..|+-.+..
T Consensus 1 Mtk~eli~~ia~~~~~ls~~~~~~~l~~~~~~i~~ 35 (94)
T 1owf_B 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMAS 35 (94)
T ss_dssp CBHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 5899999999987544554433 566677766543
No 22
>3j20_F 30S ribosomal protein S5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.41 E-value=15 Score=29.00 Aligned_cols=24 Identities=8% Similarity=0.289 Sum_probs=17.7
Q ss_pred cCCCCChHHHHHHHHHHHhhCCccccc
Q psy3274 80 KTIPVVEKDVLSFFFYTVKSNTNKLDQ 106 (115)
Q Consensus 80 ~s~pV~E~evI~~Fiy~VK~~k~Kfd~ 106 (115)
-++|++|.|||-.|+ -..++.||.
T Consensus 40 ~~lpike~eiid~~l---~~Lk~~~~e 63 (236)
T 3j20_F 40 RGYQIKEPEIIDVLL---PEVNARENQ 63 (236)
T ss_dssp HTCCCCCSHHHHHHC---CSSSSCCEE
T ss_pred cCCCcccHHHHHHHH---HhhcccCCc
Confidence 469999999999998 344444443
No 23
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=28.27 E-value=1.2e+02 Score=19.43 Aligned_cols=31 Identities=19% Similarity=0.401 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHhcCC-CCC-CC-CCHHHHHHHHH
Q psy3274 46 LQVNTLRRYKKYFKV-TSR-PG-LNKAQLAETLL 76 (115)
Q Consensus 46 L~~~tLrRYkr~f~L-~~~-p~-~sK~QLa~~V~ 76 (115)
++.+...+|+..|++ +.. .| ++.+||..+++
T Consensus 8 ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~ 41 (111)
T 2kgr_A 8 VPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILM 41 (111)
T ss_dssp SCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 777788888888877 432 23 78888888877
No 24
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=23.86 E-value=92 Score=21.70 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=30.5
Q ss_pred CcccCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHh
Q psy3274 42 DLFQLQVNTLRRYKKYFKVTSRPGLNKAQLAETLLK 77 (115)
Q Consensus 42 Df~kL~~~tLrRYkr~f~L~~~p~~sK~QLa~~V~k 77 (115)
++.+++...|+..-+.+++.-...+.|.+|+..+.+
T Consensus 5 eLk~~~~~eL~eiAk~LgI~~~s~mrKqeLI~~IL~ 40 (130)
T 1a62_A 5 ELKNTPVSELITLGENMGLENLARMRKQDIIFAILK 40 (130)
T ss_dssp HHHTSCHHHHHHHHHTTTCCCCTTSCHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHcCCCCccccCHHHHHHHHHH
Confidence 456789999999999999987788899998777655
No 25
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=23.46 E-value=1.4e+02 Score=18.45 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=16.0
Q ss_pred CHHHHHHHHHhcCC-CCC--CCCCHHHHHHHHHh
Q psy3274 47 QVNTLRRYKKYFKV-TSR--PGLNKAQLAETLLK 77 (115)
Q Consensus 47 ~~~tLrRYkr~f~L-~~~--p~~sK~QLa~~V~k 77 (115)
+..-+.+++..|.. +.. -.++.+||..++..
T Consensus 2 s~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~ 35 (143)
T 3j04_B 2 DQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS 35 (143)
T ss_dssp CHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Confidence 34455555555554 222 23566666666554
No 26
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=22.62 E-value=1.4e+02 Score=18.28 Aligned_cols=42 Identities=17% Similarity=0.315 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHhcCC-CCC--CCCCHHHHHHHHHhhhcCCCCChHHH
Q psy3274 46 LQVNTLRRYKKYFKV-TSR--PGLNKAQLAETLLKHFKTIPVVEKDV 89 (115)
Q Consensus 46 L~~~tLrRYkr~f~L-~~~--p~~sK~QLa~~V~kHF~s~pV~E~ev 89 (115)
|+..-+.++++.|.. +.. -.++.+||...+.. ...++.+.++
T Consensus 5 l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~--~~~~~~~~~~ 49 (147)
T 4ds7_A 5 LTEEQIAEFKEAFALFDKDNSGSISASELATVMRS--LGLSPSEAEV 49 (147)
T ss_dssp CCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHH--TTCCCCHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHH--hCCCCCHHHH
Confidence 555666666666655 332 23677777777765 3344555443
No 27
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=22.27 E-value=1.1e+02 Score=17.02 Aligned_cols=45 Identities=11% Similarity=0.223 Sum_probs=27.4
Q ss_pred CHHHHHHHHHhcCC-CCC--CCCCHHHHHHHHHhhhcCCCCChHHHHHHH
Q psy3274 47 QVNTLRRYKKYFKV-TSR--PGLNKAQLAETLLKHFKTIPVVEKDVLSFF 93 (115)
Q Consensus 47 ~~~tLrRYkr~f~L-~~~--p~~sK~QLa~~V~kHF~s~pV~E~evI~~F 93 (115)
+.+.+.+++..|.+ +.. -.+++++|..++... +.++.+.++-.-|
T Consensus 2 s~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~--g~~~~~~~~~~~~ 49 (77)
T 2joj_A 2 SEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRAL--GFDVKKPEILELM 49 (77)
T ss_dssp CHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHH--TCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHh--CCCCCHHHHHHHH
Confidence 44555666666655 332 238899999888875 4566665544333
No 28
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=22.03 E-value=1.6e+02 Score=18.61 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=27.2
Q ss_pred cccCCHHHHHHHHHhcCC-CCC--CCCCHHHHHHHHHhhhcCCCCChHHH
Q psy3274 43 LFQLQVNTLRRYKKYFKV-TSR--PGLNKAQLAETLLKHFKTIPVVEKDV 89 (115)
Q Consensus 43 f~kL~~~tLrRYkr~f~L-~~~--p~~sK~QLa~~V~kHF~s~pV~E~ev 89 (115)
+..|+...+..++..|.. +.. -.++.+||..++..- +.++.+.++
T Consensus 9 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~--g~~~~~~~~ 56 (156)
T 1wdc_B 9 LTKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQL--GRAPDDKEL 56 (156)
T ss_dssp ---CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHH--SSCCCHHHH
T ss_pred hccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHh--CCCCCHHHH
Confidence 455777777778877765 432 238888888887763 344444443
No 29
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=21.65 E-value=1.1e+02 Score=19.73 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHhhhcCCCCCh-HHHHHHHHHHHhh
Q psy3274 66 LNKAQLAETLLKHFKTIPVVE-KDVLSFFFYTVKS 99 (115)
Q Consensus 66 ~sK~QLa~~V~kHF~s~pV~E-~evI~~Fiy~VK~ 99 (115)
++|.||++.|...- +++-.+ ..+|..|+-.+..
T Consensus 1 Mtk~eLi~~ia~~~-~lsk~~~~~~l~~~~~~i~~ 34 (99)
T 1exe_A 1 MNKTELIKAIAQDT-GLTQVSVSKMLASFEKIITE 34 (99)
T ss_dssp CCTTHHHHHHHHHH-CSCCTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHH
Confidence 57899999999863 455444 3677778776654
No 30
>4aeq_A Colicin-M immunity protein; immune system, 3D domain SWAP; 1.89A {Escherichia coli} PDB: 2xgl_A
Probab=21.54 E-value=44 Score=23.14 Aligned_cols=27 Identities=7% Similarity=-0.122 Sum_probs=19.6
Q ss_pred HHhcCCCCCCCCCHHHHHHHHHhhhcC
Q psy3274 55 KKYFKVTSRPGLNKAQLAETLLKHFKT 81 (115)
Q Consensus 55 kr~f~L~~~p~~sK~QLa~~V~kHF~s 81 (115)
|...+.+.-.+++++|+|..|++-|+.
T Consensus 4 ~~~~~~p~C~~l~~~qvaa~VKrDflq 30 (98)
T 4aeq_A 4 WSEDKGPACYQVSDEQARTFVKNDYLQ 30 (98)
T ss_dssp ----CCCCGGGCCHHHHHHHHHHHHHH
T ss_pred eccCCccCccCcCHHHHHHHHHHHHHH
Confidence 445566666789999999999999973
No 31
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=21.40 E-value=85 Score=19.75 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHhhhcCCCCChH-HHHHHHHHHHhh
Q psy3274 66 LNKAQLAETLLKHFKTIPVVEK-DVLSFFFYTVKS 99 (115)
Q Consensus 66 ~sK~QLa~~V~kHF~s~pV~E~-evI~~Fiy~VK~ 99 (115)
++|.||++.|.+.- +++-.+. .+|..|+..+..
T Consensus 1 mtk~eli~~ia~~~-~ls~~~~~~~l~~~~~~i~~ 34 (90)
T 1b8z_A 1 MNKKELIDRVAKKA-GAKKKDVKLILDTILETITE 34 (90)
T ss_dssp CCHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CcCHHHHHHHHHHHHHHHHH
Confidence 58999999999864 4444433 566777766553
No 32
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=21.37 E-value=1.9e+02 Score=19.19 Aligned_cols=44 Identities=9% Similarity=0.118 Sum_probs=29.8
Q ss_pred cCCHHHHHHHHHhcCC-CCC--CCCCHHHHHHHHHhhhcCCCCChHHHH
Q psy3274 45 QLQVNTLRRYKKYFKV-TSR--PGLNKAQLAETLLKHFKTIPVVEKDVL 90 (115)
Q Consensus 45 kL~~~tLrRYkr~f~L-~~~--p~~sK~QLa~~V~kHF~s~pV~E~evI 90 (115)
+|+..-+..++..|.+ +.. -.++..+|..+++. .+++..+.++.
T Consensus 9 ~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~--lg~~~~~~~~~ 55 (153)
T 3i5g_B 9 KLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSS--LGRVPPDDELN 55 (153)
T ss_dssp TCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHH--TTSCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHH--cCCCccHHHHH
Confidence 4778888888888877 443 23888888888775 34555554443
No 33
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=20.69 E-value=1.1e+02 Score=22.96 Aligned_cols=43 Identities=12% Similarity=0.199 Sum_probs=32.1
Q ss_pred CcccCCHHHHHHHHHhcCCCC------CCCCCHHHHHHHHHhhhcCCCC
Q psy3274 42 DLFQLQVNTLRRYKKYFKVTS------RPGLNKAQLAETLLKHFKTIPV 84 (115)
Q Consensus 42 Df~kL~~~tLrRYkr~f~L~~------~p~~sK~QLa~~V~kHF~s~pV 84 (115)
++.+++.+.|+.|.+.+--+. --+++.+++...|.++|.++|-
T Consensus 168 ~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~ 216 (424)
T 3amj_B 168 TLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPA 216 (424)
T ss_dssp HHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCC
T ss_pred HHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCC
Confidence 566788899999886553321 1258889999999999988764
No 34
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=20.63 E-value=88 Score=19.74 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHhhhcCCCCChH-HHHHHHHHHHhh
Q psy3274 66 LNKAQLAETLLKHFKTIPVVEK-DVLSFFFYTVKS 99 (115)
Q Consensus 66 ~sK~QLa~~V~kHF~s~pV~E~-evI~~Fiy~VK~ 99 (115)
++|.||++.|.+. .+++-.+. .+|..|+..+..
T Consensus 1 m~k~eli~~ia~~-~~ls~~~~~~~l~~~~~~i~~ 34 (90)
T 1mul_A 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITE 34 (90)
T ss_dssp CCHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHH
Confidence 5899999999986 34544433 566677766543
No 35
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=20.55 E-value=86 Score=23.64 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=32.6
Q ss_pred cCcccCCHHHHHHHHHhcCCC------CCCCCCHHHHHHHHHhhhcCCCCC
Q psy3274 41 VDLFQLQVNTLRRYKKYFKVT------SRPGLNKAQLAETLLKHFKTIPVV 85 (115)
Q Consensus 41 vDf~kL~~~tLrRYkr~f~L~------~~p~~sK~QLa~~V~kHF~s~pV~ 85 (115)
=++.+++.+.|+.|.+.+--+ +--+++ +++...|.++|..+|-.
T Consensus 161 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~ 210 (421)
T 3hdi_A 161 ETLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPT 210 (421)
T ss_dssp HHHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCC
T ss_pred HHHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCCC
Confidence 366788999999987554332 122588 99999999999987654
No 36
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=20.39 E-value=1.8e+02 Score=18.57 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=24.8
Q ss_pred cccCCHHHHHHHHHhcCC-CCC--CCCCHHHHHHHHHhh
Q psy3274 43 LFQLQVNTLRRYKKYFKV-TSR--PGLNKAQLAETLLKH 78 (115)
Q Consensus 43 f~kL~~~tLrRYkr~f~L-~~~--p~~sK~QLa~~V~kH 78 (115)
+..|+...+.+++..|.. +.. -.++.+||..++..-
T Consensus 16 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~ 54 (166)
T 2mys_B 16 FSMFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAM 54 (166)
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHh
Confidence 445777777888877766 432 238888888887763
Done!