RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3274
         (115 letters)



>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
          sphaeroides [TaxId: 1063]}
          Length = 288

 Score = 25.3 bits (55), Expect = 1.8
 Identities = 7/53 (13%), Positives = 22/53 (41%)

Query: 11 YHKCLIQSVRNKRRRKDSEDDSNENDESPDVDLFQLQVNTLRRYKKYFKVTSR 63
          +H+     ++ +  R+ +  D+  +  S + +  +      R Y +  +  +R
Sbjct: 43 FHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERVFREYGETGQGRTR 95


>d1g2ra_ d.192.1.1 (A:) Hypothetical cytosolic protein SP0554
          {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 94

 Score = 23.1 bits (50), Expect = 5.6
 Identities = 4/20 (20%), Positives = 9/20 (45%)

Query: 4  RHIYICEYHKCLIQSVRNKR 23
          R  YI   +   +++ + K 
Sbjct: 42 RGAYIKLDNAEALEAKKKKV 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 396,905
Number of extensions: 15686
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 5
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)