Query psy3275
Match_columns 114
No_of_seqs 195 out of 348
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 20:53:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3275.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3275hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0187|consensus 100.0 5.7E-34 1.2E-38 211.7 2.8 59 1-59 58-116 (134)
2 PRK01151 rps17E 30S ribosomal 100.0 3.7E-32 8.1E-37 178.3 0.7 58 53-110 1-58 (58)
3 PTZ00154 40S ribosomal protein 100.0 2.3E-30 5E-35 193.0 3.7 55 1-55 58-112 (134)
4 PF00833 Ribosomal_S17e: Ribos 100.0 1.9E-30 4E-35 190.8 -1.4 60 52-111 1-60 (121)
5 PTZ00154 40S ribosomal protein 100.0 7.2E-30 1.6E-34 190.4 0.1 61 52-112 1-61 (134)
6 COG1383 RPS17A Ribosomal prote 100.0 2.4E-30 5.2E-35 176.9 -2.3 61 52-112 1-61 (74)
7 KOG0187|consensus 99.9 1.1E-29 2.4E-34 188.8 -1.0 59 52-110 1-59 (134)
8 PF00833 Ribosomal_S17e: Ribos 99.9 5.1E-29 1.1E-33 183.2 2.3 57 1-57 58-114 (121)
9 COG0177 Nth Predicted EndoIII- 72.3 5 0.00011 32.1 3.5 37 44-80 71-109 (211)
10 PF10723 RepB-RCR_reg: Replica 71.2 2.9 6.3E-05 28.9 1.7 56 21-76 27-83 (84)
11 PRK10702 endonuclease III; Pro 56.5 15 0.00032 28.8 3.4 33 44-76 71-105 (211)
12 PRK13910 DNA glycosylase MutY; 55.8 11 0.00023 31.3 2.6 36 44-79 35-71 (289)
13 PF06584 DIRP: DIRP; InterPro 52.5 13 0.00029 27.0 2.4 47 32-79 3-53 (109)
14 PF01402 RHH_1: Ribbon-helix-h 51.4 37 0.00081 19.0 3.7 32 38-69 3-38 (39)
15 COG1194 MutY A/G-specific DNA 48.7 15 0.00033 31.6 2.5 54 28-84 63-117 (342)
16 TIGR01083 nth endonuclease III 47.9 21 0.00046 27.0 3.0 33 44-76 68-102 (191)
17 PF05550 Peptidase_C53: Pestiv 43.2 11 0.00023 29.6 0.7 13 5-17 74-86 (168)
18 TIGR01084 mutY A/G-specific ad 37.0 35 0.00075 27.9 2.8 36 44-79 68-104 (275)
19 PRK10880 adenine DNA glycosyla 33.6 35 0.00076 29.0 2.4 36 44-79 72-108 (350)
20 PF12596 Tnp_P_element_C: 87kD 33.1 4.4 9.6E-05 29.6 -2.6 11 100-110 81-91 (106)
21 cd04457 S1_S28E S1_S28E: S28E, 28.8 35 0.00076 22.8 1.3 21 5-25 37-58 (60)
22 PF13046 DUF3906: Protein of u 27.8 43 0.00094 22.6 1.6 34 63-105 30-63 (64)
23 PF01200 Ribosomal_S28e: Ribos 27.2 22 0.00049 24.3 0.2 20 5-24 46-66 (69)
24 PTZ00085 40S ribosomal protein 25.6 42 0.00091 23.2 1.3 20 5-24 50-70 (73)
25 PF14384 DUF4415: Domain of un 25.4 67 0.0015 20.6 2.2 26 36-61 30-55 (62)
26 COG2247 LytB Putative cell wal 24.8 89 0.0019 27.1 3.3 50 27-76 74-131 (337)
27 PF12651 RHH_3: Ribbon-helix-h 23.6 1.6E+02 0.0034 17.7 3.4 35 38-72 6-44 (44)
28 PF14401 RLAN: RimK-like ATPgr 23.6 73 0.0016 24.0 2.4 60 13-74 34-114 (153)
29 PRK04007 rps28e 30S ribosomal 23.3 51 0.0011 22.7 1.3 20 5-24 45-65 (70)
30 PF14251 DUF4346: Domain of un 20.6 29 0.00062 26.0 -0.3 48 34-81 40-95 (119)
No 1
>KOG0187|consensus
Probab=99.98 E-value=5.7e-34 Score=211.70 Aligned_cols=59 Identities=69% Similarity=1.012 Sum_probs=56.8
Q ss_pred CcccccccccceeeehhhHHHhhhcCCCcccccccccceeechHHHHHHHHhCCccchh
Q psy3275 1 MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRMLGRVRTKT 59 (114)
Q Consensus 1 mkriq~gpvrgis~klqEeererr~n~vp~~s~ld~~~i~vd~~t~~ml~~mg~VRtk~ 59 (114)
|||||+|||||||||||||||||||||||++|+||++.|+||+||+|||+++|+.-+..
T Consensus 58 mkrIqkGpvRGISiKLQEEERErrdnyVPevSaLd~d~ieVD~dT~eMlk~lg~~~~~~ 116 (134)
T KOG0187|consen 58 MKRIQKGPVRGISIKLQEEERERRDNYVPEVSALDQDIIEVDPDTKEMLKLLGFGSLSG 116 (134)
T ss_pred HHHHHcCCccceeEeecHHHHHhhcccCcchhhcchhheeeChhHHHHHHHcCCCCcCc
Confidence 89999999999999999999999999999999999999999999999999999977654
No 2
>PRK01151 rps17E 30S ribosomal protein S17e; Validated
Probab=99.97 E-value=3.7e-32 Score=178.35 Aligned_cols=58 Identities=38% Similarity=0.653 Sum_probs=56.5
Q ss_pred CCccchhhhHHHHHHHHHhccccCCchhhhhhhhhhhccccCCceeeeeeeeeeeeec
Q psy3275 53 GRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTL 110 (114)
Q Consensus 53 g~VRtk~VKr~a~~Lieky~~~ft~DF~~NK~vv~eia~I~SKklRNkIAGYVTh~~~ 110 (114)
|+|||++||++|++|+|+||++||.|||+||++|+++|+|+||+|||+|||||||+++
T Consensus 1 G~Ir~k~IKr~a~~lieky~~~ft~DFe~NK~~v~e~a~i~SK~lRNrIAGYiT~~~~ 58 (58)
T PRK01151 1 GNIRPKYIKRTAEELLEKYPDLFTTDFETNKKLVEELTNIESKKVRNRIAGYITRKVK 58 (58)
T ss_pred CCcchHHHHHHHHHHHHHhHHHhcccHHHHHHHHHHHhcCccHhHHHHHhhhhhhccC
Confidence 7899999999999999999999999999999999999999999999999999999864
No 3
>PTZ00154 40S ribosomal protein S17; Provisional
Probab=99.96 E-value=2.3e-30 Score=193.05 Aligned_cols=55 Identities=62% Similarity=0.888 Sum_probs=53.8
Q ss_pred CcccccccccceeeehhhHHHhhhcCCCcccccccccceeechHHHHHHHHhCCc
Q psy3275 1 MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRMLGRV 55 (114)
Q Consensus 1 mkriq~gpvrgis~klqEeererr~n~vp~~s~ld~~~i~vd~~t~~ml~~mg~V 55 (114)
|||||+|||||||||||||||||||||||++|+||++.|+||++|+|||++||+-
T Consensus 58 mkri~~gpvrgis~klqeeererr~~yvPe~s~~~~~~i~vd~~t~~ml~~~~~~ 112 (134)
T PTZ00154 58 MKRIQKGPVRGISLKLQEEERERRMDYVPEKSEVDIDNITVDQDTKDMLKSLGLG 112 (134)
T ss_pred HhhhccCCccccceehhHHHHHHhhccCCcchhcccceeEECHHHHHHHHHcCCC
Confidence 7999999999999999999999999999999999999999999999999999984
No 4
>PF00833 Ribosomal_S17e: Ribosomal S17; InterPro: IPR001210 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped in this family of ribosomal proteins, S17e. They include, vertebrate, Drosophila and Neurospora crassa (crp-3) S17's as well as yeast S17a (RP51A) and S17b (RP51B) and archaebacterial S17e [, , ].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1RQ6_A 2XZM_V 2XZN_V 3IZ6_Q 3IZB_Q 3O30_K 3O2Z_K 3U5G_R 3U5C_R.
Probab=99.95 E-value=1.9e-30 Score=190.83 Aligned_cols=60 Identities=58% Similarity=0.890 Sum_probs=52.8
Q ss_pred hCCccchhhhHHHHHHHHHhccccCCchhhhhhhhhhhccccCCceeeeeeeeeeeeecc
Q psy3275 52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTLT 111 (114)
Q Consensus 52 mg~VRtk~VKr~a~~Lieky~~~ft~DF~~NK~vv~eia~I~SKklRNkIAGYVTh~~~~ 111 (114)
||+|||++||++|++|+|+||++||+|||+||++|+++|+||||+|||+|||||||+++.
T Consensus 1 MG~Vrtk~IKr~a~~lieky~~~~t~DF~~NK~v~~eva~i~SKklRNkIAGYvThlmKr 60 (121)
T PF00833_consen 1 MGRVRTKTIKRAARELIEKYYDRFTNDFETNKKVVEEVAIIPSKKLRNKIAGYVTHLMKR 60 (121)
T ss_dssp ------HHHHHHHHHHHTTCTTTSSSSHHHHHHHHHHCSSSSSTTHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHccccchhhHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999998864
No 5
>PTZ00154 40S ribosomal protein S17; Provisional
Probab=99.95 E-value=7.2e-30 Score=190.40 Aligned_cols=61 Identities=67% Similarity=0.964 Sum_probs=59.2
Q ss_pred hCCccchhhhHHHHHHHHHhccccCCchhhhhhhhhhhccccCCceeeeeeeeeeeeeccc
Q psy3275 52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTLTA 112 (114)
Q Consensus 52 mg~VRtk~VKr~a~~Lieky~~~ft~DF~~NK~vv~eia~I~SKklRNkIAGYVTh~~~~~ 112 (114)
||+|||++||++|++|+|+||++||+|||+||++|+++|+|+||+|||+|||||||+++..
T Consensus 1 MG~VRtk~VKr~a~~LiEkY~~~ft~DFe~NKkvv~eva~I~SKrlRNrIAGYIThlmkri 61 (134)
T PTZ00154 1 MGRVRTKTVKRAARQIVEKYYSKLTLDFHTNKKIVEEVAIIPSKRLRNKIAGFVTHLMKRI 61 (134)
T ss_pred CCCcchHHHHHHHHHHHHHhHHHhcccHHHHHHHHHHHhcccchhhhhHHHHHHHHHHhhh
Confidence 8999999999999999999999999999999999999999999999999999999998754
No 6
>COG1383 RPS17A Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.4e-30 Score=176.92 Aligned_cols=61 Identities=49% Similarity=0.706 Sum_probs=59.3
Q ss_pred hCCccchhhhHHHHHHHHHhccccCCchhhhhhhhhhhccccCCceeeeeeeeeeeeeccc
Q psy3275 52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTLTA 112 (114)
Q Consensus 52 mg~VRtk~VKr~a~~Lieky~~~ft~DF~~NK~vv~eia~I~SKklRNkIAGYVTh~~~~~ 112 (114)
||+|||++|||+|++|+|+||+.||.||++||++|++++.|+||+|||+|||||||+++..
T Consensus 1 MG~IR~~~vKR~a~el~ekY~~~ft~dFe~NK~~V~e~~~i~SK~lRN~IAGYiT~~~~~~ 61 (74)
T COG1383 1 MGRIRPKFVKRTARELIEKYPDKFTDDFETNKRLVEELANIQSKKLRNRIAGYITRLVKRI 61 (74)
T ss_pred CCCcchHHHHHHHHHHHHHhHHHhcccHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999998754
No 7
>KOG0187|consensus
Probab=99.95 E-value=1.1e-29 Score=188.84 Aligned_cols=59 Identities=76% Similarity=1.120 Sum_probs=57.9
Q ss_pred hCCccchhhhHHHHHHHHHhccccCCchhhhhhhhhhhccccCCceeeeeeeeeeeeec
Q psy3275 52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTL 110 (114)
Q Consensus 52 mg~VRtk~VKr~a~~Lieky~~~ft~DF~~NK~vv~eia~I~SKklRNkIAGYVTh~~~ 110 (114)
||+||++++|++|+.|+|+||.++++|||+||++|+|+|+||||+|||+|||||||+++
T Consensus 1 MGrVrtktvKkaar~iiEkYy~rl~~dF~tNk~vceEvAII~SKkLrNkIAGyvtHLmk 59 (134)
T KOG0187|consen 1 MGRVRTKTVKKAARVIIEKYYTRLTLDFHTNKRVCEEVAIIPSKKLRNKIAGYVTHLMK 59 (134)
T ss_pred CCcchhHHHHHHHHHHHHHHhccccccccccchhehheeeecchhhhhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999875
No 8
>PF00833 Ribosomal_S17e: Ribosomal S17; InterPro: IPR001210 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped in this family of ribosomal proteins, S17e. They include, vertebrate, Drosophila and Neurospora crassa (crp-3) S17's as well as yeast S17a (RP51A) and S17b (RP51B) and archaebacterial S17e [, , ].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1RQ6_A 2XZM_V 2XZN_V 3IZ6_Q 3IZB_Q 3O30_K 3O2Z_K 3U5G_R 3U5C_R.
Probab=99.95 E-value=5.1e-29 Score=183.23 Aligned_cols=57 Identities=70% Similarity=1.017 Sum_probs=53.7
Q ss_pred CcccccccccceeeehhhHHHhhhcCCCcccccccccceeechHHHHHHHHhCCccc
Q psy3275 1 MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRMLGRVRT 57 (114)
Q Consensus 1 mkriq~gpvrgis~klqEeererr~n~vp~~s~ld~~~i~vd~~t~~ml~~mg~VRt 57 (114)
|||||+|||||||||||||||||||||||++|+||++.|+|||||+|||++||+-..
T Consensus 58 mKriq~g~vrgis~klqEeErerr~n~vpe~s~~d~~~i~VD~~T~emlk~l~~~~~ 114 (121)
T PF00833_consen 58 MKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKSLGFGSL 114 (121)
T ss_dssp HHHHTSSSSTTCSSCCCCHHHHCCTSSSSSSSEEESCS-ECTHHHHHHHHHTTTTSS
T ss_pred HHHHHhccccccchhhhHHHHHhhcccCCccccccCCcceeChhHHHHHHHcCCCCC
Confidence 799999999999999999999999999999999999999999999999999998543
No 9
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=72.30 E-value=5 Score=32.13 Aligned_cols=37 Identities=22% Similarity=0.469 Sum_probs=30.6
Q ss_pred HHHHHHHHhCCccc--hhhhHHHHHHHHHhccccCCchh
Q psy3275 44 ETKDMLRMLGRVRT--KTVKKASRVIIEKYYTKLTLDFH 80 (114)
Q Consensus 44 ~t~~ml~~mg~VRt--k~VKr~a~~Lieky~~~ft~DF~ 80 (114)
+..+.|+..|+-+. ++|+.+|+.|+|+|.....++++
T Consensus 71 ~l~~~I~~iGlyr~KAk~I~~~~~~l~e~~~g~vP~~~~ 109 (211)
T COG0177 71 ELEELIKSIGLYRNKAKNIKELARILLEKFGGEVPDTRE 109 (211)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHcCCCCCchHH
Confidence 34577888888776 78999999999999998888773
No 10
>PF10723 RepB-RCR_reg: Replication regulatory protein RepB; InterPro: IPR019661 This family of proteins regulates the replication of rolling circle replication (RCR) plasmids that have a double-strand replication origin (dso). Regulation of the replication of the RCR plasmids occurs mainly at the initiation of leading strand synthesis at the dso, such that concentration of Rep protein controls plasmid replication []. ; PDB: 2KEL_B.
Probab=71.20 E-value=2.9 Score=28.89 Aligned_cols=56 Identities=14% Similarity=0.083 Sum_probs=30.4
Q ss_pred HhhhcCCCccccccc-ccceeechHHHHHHHHhCCccchhhhHHHHHHHHHhccccC
Q psy3275 21 RERRDNYVPEVSALE-QDVIEVDSETKDMLRMLGRVRTKTVKKASRVIIEKYYTKLT 76 (114)
Q Consensus 21 rerr~n~vp~~s~ld-~~~i~vd~~t~~ml~~mg~VRtk~VKr~a~~Lieky~~~ft 76 (114)
.||...|+...+.-. .-.+.||++.+++|..|.....-+-..+-..||+.|++..+
T Consensus 27 aerqr~~~~RKr~t~k~i~v~I~~~~K~~L~~lc~~~GlTQae~IE~LI~~~~~~~~ 83 (84)
T PF10723_consen 27 AERQRASRARKRETHKRINVFIPNELKERLEELCKEQGLTQAEMIERLIKSELQQRN 83 (84)
T ss_dssp --------------EEEEEEEEEHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHhhcCeeEEEECHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHcc
Confidence 345555665555432 33588999999999999877776777777788888887543
No 11
>PRK10702 endonuclease III; Provisional
Probab=56.46 E-value=15 Score=28.84 Aligned_cols=33 Identities=18% Similarity=0.409 Sum_probs=26.3
Q ss_pred HHHHHHHHhCC--ccchhhhHHHHHHHHHhccccC
Q psy3275 44 ETKDMLRMLGR--VRTKTVKKASRVIIEKYYTKLT 76 (114)
Q Consensus 44 ~t~~ml~~mg~--VRtk~VKr~a~~Lieky~~~ft 76 (114)
+..+.|+.+|+ .|.++++++|+.|++.|...+.
T Consensus 71 ~l~~~i~~~G~y~~kA~~l~~~a~~i~~~~~~~~p 105 (211)
T PRK10702 71 GVKTYIKTIGLYNSKAENVIKTCRILLEQHNGEVP 105 (211)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 44567888997 6889999999999998865443
No 12
>PRK13910 DNA glycosylase MutY; Provisional
Probab=55.78 E-value=11 Score=31.31 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=29.0
Q ss_pred HHHHHHHHhCC-ccchhhhHHHHHHHHHhccccCCch
Q psy3275 44 ETKDMLRMLGR-VRTKTVKKASRVIIEKYYTKLTLDF 79 (114)
Q Consensus 44 ~t~~ml~~mg~-VRtk~VKr~a~~Lieky~~~ft~DF 79 (114)
+..++++.+|+ -|.++++++|+.|.++|...|+.++
T Consensus 35 el~~~~~glGyy~RAr~L~~~A~~i~~~~~g~~P~~~ 71 (289)
T PRK13910 35 EVLLLWRGLGYYSRAKNLKKSAEICVKEHHSQLPNDY 71 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHhCCCCChhH
Confidence 45577788884 5778999999999999987777665
No 13
>PF06584 DIRP: DIRP; InterPro: IPR010561 DIRP (Domain in Rb-related Pathway) is postulated to be involved in the Rb-related pathway, which is encoded by multiple eukaryotic genomes and is present in proteins including lin-9 of Caenorhabditis elegans, aly of Drosophila melanogaster and mustard weed. Studies of lin-9 and aly of fruit fly proteins containing DIRP suggest that this domain might be involved in development. Aly, lin-9, act in parallel to, or downstream of, activation of MAPK by the RTK-Ras signalling pathway.
Probab=52.46 E-value=13 Score=27.00 Aligned_cols=47 Identities=17% Similarity=0.328 Sum_probs=39.0
Q ss_pred ccccccceeechHHHHHH-HHhCCccchhhhHHHHHHHHHh---ccccCCch
Q psy3275 32 SALEQDVIEVDSETKDML-RMLGRVRTKTVKKASRVIIEKY---YTKLTLDF 79 (114)
Q Consensus 32 s~ld~~~i~vd~~t~~ml-~~mg~VRtk~VKr~a~~Lieky---~~~ft~DF 79 (114)
|.||..... +.|-+++| ..+|...++..-|..|..|.+= +-+|+.-|
T Consensus 3 S~iDk~~f~-~neF~~~L~e~~p~l~t~~ltR~eW~~IRr~mGKPRRfS~aF 53 (109)
T PF06584_consen 3 SFIDKPLFE-DNEFQECLRESFPLLKTRKLTRVEWQKIRRSMGKPRRFSPAF 53 (109)
T ss_pred ccccHHHHh-hhHHHHHHHHhCCcccCCccCHHHHHHHHHHcCCCCcCcHHH
Confidence 889999888 99999999 7889999999999999988753 44555555
No 14
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=51.37 E-value=37 Score=18.96 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=20.8
Q ss_pred ceeechHHHHHHHHh----CCccchhhhHHHHHHHH
Q psy3275 38 VIEVDSETKDMLRML----GRVRTKTVKKASRVIIE 69 (114)
Q Consensus 38 ~i~vd~~t~~ml~~m----g~VRtk~VKr~a~~Lie 69 (114)
+|.+|+++.+.|+.+ |.-+...|..+....++
T Consensus 3 ti~l~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l~ 38 (39)
T PF01402_consen 3 TIRLPDELYERLDELAKELGRSRSELIREAIREYLE 38 (39)
T ss_dssp EEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHH
T ss_pred EEEeCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 477888888888765 66555555555544443
No 15
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=48.66 E-value=15 Score=31.60 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=40.2
Q ss_pred CcccccccccceeechHHHHHHHHhC-CccchhhhHHHHHHHHHhccccCCchhhhhh
Q psy3275 28 VPEVSALEQDVIEVDSETKDMLRMLG-RVRTKTVKKASRVIIEKYYTKLTLDFHTNKR 84 (114)
Q Consensus 28 vp~~s~ld~~~i~vd~~t~~ml~~mg-~VRtk~VKr~a~~Lieky~~~ft~DF~~NK~ 84 (114)
-|.+.+|-.. ..| |....-..|| .-|-+..+++|..+.+.|...|++|++.=+.
T Consensus 63 fPti~~LA~A--~~~-evl~~W~gLGYysRArnL~~~A~~v~~~~~G~~P~~~~~l~~ 117 (342)
T COG1194 63 FPTIKALAAA--PED-EVLKAWEGLGYYSRARNLHKAAQEVVERHGGEFPDDEEELAA 117 (342)
T ss_pred CCCHHHHhcC--CHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHh
Confidence 3666655432 233 5666666788 7788999999999999999999999965443
No 16
>TIGR01083 nth endonuclease III. This equivalog model identifes nth members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=47.94 E-value=21 Score=26.95 Aligned_cols=33 Identities=18% Similarity=0.491 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCc--cchhhhHHHHHHHHHhccccC
Q psy3275 44 ETKDMLRMLGRV--RTKTVKKASRVIIEKYYTKLT 76 (114)
Q Consensus 44 ~t~~ml~~mg~V--Rtk~VKr~a~~Lieky~~~ft 76 (114)
+..+.|+.+|+- |.++|+++|..|++.|...+.
T Consensus 68 ~L~~~ir~~G~~~~Ka~~i~~~a~~i~~~~~~~~~ 102 (191)
T TIGR01083 68 ELEEYIKSIGLYRNKAKNIIALCRILVERYGGEVP 102 (191)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCCc
Confidence 345668889975 789999999999998755433
No 17
>PF05550 Peptidase_C53: Pestivirus Npro endopeptidase C53; InterPro: IPR008751 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C53 (clan C-). The active site residues occur in the order E, H, C in the sequence which is unlike that in any other family. They are unique to pestiviruses. The N-terminal cysteine peptidase (Npro) encoded by the bovine viral diarrhoea virus genome is responsible for the self-cleavage that releases the N terminus of the core protein. This unique protease is dispensable for viral replication, and its coding region can be replaced by a ubiquitin gene directly fused in frame to the core [, , , ].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=43.25 E-value=11 Score=29.64 Aligned_cols=13 Identities=38% Similarity=0.442 Sum_probs=10.9
Q ss_pred ccccccceeeehh
Q psy3275 5 RHSQVRGISIKLQ 17 (114)
Q Consensus 5 q~gpvrgis~klq 17 (114)
.+|||.||+||.-
T Consensus 74 ~~GpVSGIYikpG 86 (168)
T PF05550_consen 74 HRGPVSGIYIKPG 86 (168)
T ss_pred cCCCcceEEecCC
Confidence 4799999999863
No 18
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=36.98 E-value=35 Score=27.91 Aligned_cols=36 Identities=25% Similarity=0.478 Sum_probs=26.9
Q ss_pred HHHHHHHHhCC-ccchhhhHHHHHHHHHhccccCCch
Q psy3275 44 ETKDMLRMLGR-VRTKTVKKASRVIIEKYYTKLTLDF 79 (114)
Q Consensus 44 ~t~~ml~~mg~-VRtk~VKr~a~~Lieky~~~ft~DF 79 (114)
+..++++.+|+ -|.++++++|+.|.+.|...+..++
T Consensus 68 eL~~~~~~lG~y~RAr~L~~~A~~i~~~~~g~~p~~~ 104 (275)
T TIGR01084 68 EVLKLWEGLGYYARARNLHKAAQEVVEEFGGEFPQDF 104 (275)
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHHHHHHcCCCCcHHH
Confidence 44566788886 3467999999999998877666543
No 19
>PRK10880 adenine DNA glycosylase; Provisional
Probab=33.64 E-value=35 Score=28.99 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=27.0
Q ss_pred HHHHHHHHhCC-ccchhhhHHHHHHHHHhccccCCch
Q psy3275 44 ETKDMLRMLGR-VRTKTVKKASRVIIEKYYTKLTLDF 79 (114)
Q Consensus 44 ~t~~ml~~mg~-VRtk~VKr~a~~Lieky~~~ft~DF 79 (114)
+..++++.+|+ -|.++++++|+.|+++|...|..++
T Consensus 72 el~~~~~glGyy~RAr~L~~~A~~i~~~~~g~~p~~~ 108 (350)
T PRK10880 72 EVLHLWTGLGYYARARNLHKAAQQVATLHGGEFPETF 108 (350)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCchhhH
Confidence 33455566775 3678999999999999887776555
No 20
>PF12596 Tnp_P_element_C: 87kDa Transposase; InterPro: IPR022242 This domain family is found in eukaryotes, and is typically between 78 and 110 amino acids in length. The family is found in association with PF05485 from PFAM. There are two completely conserved residues (D and G) that may be functionally important. This family is an 87kDa transposase protein which catalyses both the precise and imprecise excision of a nonautonomous P transposable element.
Probab=33.07 E-value=4.4 Score=29.57 Aligned_cols=11 Identities=36% Similarity=0.286 Sum_probs=8.7
Q ss_pred eeeeeeeeeec
Q psy3275 100 KIAGGLIKRTL 110 (114)
Q Consensus 100 kIAGYVTh~~~ 110 (114)
=|||||.|+.+
T Consensus 81 YiaGyVa~k~~ 91 (106)
T PF12596_consen 81 YIAGYVAKKFR 91 (106)
T ss_pred HHHHHHHHHHH
Confidence 38999988765
No 21
>cd04457 S1_S28E S1_S28E: S28E, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. S28E protein is a component of the 30S ribosomal subunit. S28E is highly conserved among archaea and eukaryotes. S28E may control precursor RNA splicing and turnover in mRNA maturation process but its function in the ribosome is largely unknown. The structure contains an OB-fold found in many oligosaccharide and nucleic acid binding proteins. This implies that S28E might be involved in protein synthesis.
Probab=28.82 E-value=35 Score=22.82 Aligned_cols=21 Identities=43% Similarity=0.491 Sum_probs=16.3
Q ss_pred cccccc-ceeeehhhHHHhhhc
Q psy3275 5 RHSQVR-GISIKLQEEERERRD 25 (114)
Q Consensus 5 q~gpvr-gis~klqEeererr~ 25 (114)
-+|||| |=-+-|-|-|||-|.
T Consensus 37 VKGPVr~GDIl~L~EteREArr 58 (60)
T cd04457 37 VKGPVREGDILMLLETEREARR 58 (60)
T ss_pred ccCCcccCcEEeehhhhhhhhh
Confidence 479998 555788899999763
No 22
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=27.80 E-value=43 Score=22.62 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=24.6
Q ss_pred HHHHHHHHhccccCCchhhhhhhhhhhccccCCceeeeeeeee
Q psy3275 63 ASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGL 105 (114)
Q Consensus 63 ~a~~Lieky~~~ft~DF~~NK~vv~eia~I~SKklRNkIAGYV 105 (114)
++..-+|+|+-..+. +.+++....|+++|- ||||
T Consensus 30 ~~e~eler~fl~~P~--------v~e~~l~EKKri~~G-~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPE--------VKEVALYEKKRIRKG-AGYV 63 (64)
T ss_pred HHHHHhhhhccCCCC--------ceEEEEEEEEeeeCC-ceeE
Confidence 556667777654443 678999998888875 7887
No 23
>PF01200 Ribosomal_S28e: Ribosomal protein S28e; InterPro: IPR000289 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. Examples are: Mammalian S28 [] Plant S28 [] Fungi S33 [] Archaebacterial S28e. These proteins have from 64 to 78 amino acids and a highly conserved C-terminal region.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZ6_Y 2XZN_1 2XZM_1 1NY4_A 1NE3_A 3U5C_c 3U5G_c 3O30_R 3O2Z_R 3IZB_Y.
Probab=27.20 E-value=22 Score=24.25 Aligned_cols=20 Identities=45% Similarity=0.546 Sum_probs=12.2
Q ss_pred cccccc-ceeeehhhHHHhhh
Q psy3275 5 RHSQVR-GISIKLQEEERERR 24 (114)
Q Consensus 5 q~gpvr-gis~klqEeererr 24 (114)
-+|||| |=-|.|.|-|||-|
T Consensus 46 VkGPVr~GDil~LlEtEREAr 66 (69)
T PF01200_consen 46 VKGPVREGDILTLLETEREAR 66 (69)
T ss_dssp ECSTTSTT-EEEESSSS----
T ss_pred ccCCcccCcEEEEeehhhhhh
Confidence 479998 44488999999865
No 24
>PTZ00085 40S ribosomal protein S28; Provisional
Probab=25.59 E-value=42 Score=23.25 Aligned_cols=20 Identities=45% Similarity=0.556 Sum_probs=16.1
Q ss_pred cccccc-ceeeehhhHHHhhh
Q psy3275 5 RHSQVR-GISIKLQEEERERR 24 (114)
Q Consensus 5 q~gpvr-gis~klqEeererr 24 (114)
-+|||| |=-|-|-|-|||-|
T Consensus 50 VkGPVr~GDIl~L~EteREAr 70 (73)
T PTZ00085 50 VKGPVREGDILSLMETEREAR 70 (73)
T ss_pred ccCCcccCcEEeehhhhhhhh
Confidence 479998 56678899999866
No 25
>PF14384 DUF4415: Domain of unknown function (DUF4415)
Probab=25.42 E-value=67 Score=20.57 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=21.1
Q ss_pred ccceeechHHHHHHHHhCCccchhhh
Q psy3275 36 QDVIEVDSETKDMLRMLGRVRTKTVK 61 (114)
Q Consensus 36 ~~~i~vd~~t~~ml~~mg~VRtk~VK 61 (114)
.-+|.+|+|+.+-+++.|.-.++.|.
T Consensus 30 ~Vtirld~dVl~~fka~G~gyQtriN 55 (62)
T PF14384_consen 30 QVTIRLDPDVLEWFKAQGKGYQTRIN 55 (62)
T ss_pred eEEEEeCHHHHHHHHHHChhHHHHHH
Confidence 34699999999999999987666553
No 26
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=24.83 E-value=89 Score=27.13 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=37.8
Q ss_pred CCcccccccccceeechHHHHHHHHhCC--------ccchhhhHHHHHHHHHhccccC
Q psy3275 27 YVPEVSALEQDVIEVDSETKDMLRMLGR--------VRTKTVKKASRVIIEKYYTKLT 76 (114)
Q Consensus 27 ~vp~~s~ld~~~i~vd~~t~~ml~~mg~--------VRtk~VKr~a~~Lieky~~~ft 76 (114)
..|+.=.+=-..+-|.|++.++|++||. -|.-+-.++|..+-++||..|+
T Consensus 74 lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~ 131 (337)
T COG2247 74 LNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFK 131 (337)
T ss_pred hCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhc
Confidence 4455444445678899999999999996 3455667888888888888887
No 27
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=23.63 E-value=1.6e+02 Score=17.70 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=26.8
Q ss_pred ceeechHHHHHHHHh----CCccchhhhHHHHHHHHHhc
Q psy3275 38 VIEVDSETKDMLRML----GRVRTKTVKKASRVIIEKYY 72 (114)
Q Consensus 38 ~i~vd~~t~~ml~~m----g~VRtk~VKr~a~~Lieky~ 72 (114)
.+.+|++..+-|+.+ |.-+.+.|-.|-..++++|.
T Consensus 6 t~~l~~el~~~L~~ls~~t~i~~S~Ll~eAle~~l~ky~ 44 (44)
T PF12651_consen 6 TFSLDKELYEKLKELSEETGIPKSKLLREALEDYLEKYE 44 (44)
T ss_pred EEecCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcC
Confidence 356778877777754 77777888888888998883
No 28
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=23.60 E-value=73 Score=23.96 Aligned_cols=60 Identities=18% Similarity=0.348 Sum_probs=43.5
Q ss_pred eeehhhHHHhhhcCCCcccccccc---------cceeechHHHHHHHH------------hCCccchhhhHHHHHHHHHh
Q psy3275 13 SIKLQEEERERRDNYVPEVSALEQ---------DVIEVDSETKDMLRM------------LGRVRTKTVKKASRVIIEKY 71 (114)
Q Consensus 13 s~klqEeererr~n~vp~~s~ld~---------~~i~vd~~t~~ml~~------------mg~VRtk~VKr~a~~Lieky 71 (114)
+-.|--|. |-..-+|+|+.+.. ..-++|+.....|+. +|.......+++|+.|.|.|
T Consensus 34 Y~SLLAEA--Rgh~viPsV~ti~DL~~~~l~~~~~~~l~~~l~~~l~~~~~~~~~~l~iyFG~~~~~~~~~lAr~lFe~F 111 (153)
T PF14401_consen 34 YCSLLAEA--RGHRVIPSVRTINDLSRKSLYRLALEELDPLLQKALAKLIKSERFELSIYFGQTPDPRLERLARQLFERF 111 (153)
T ss_pred eeeHHHHH--cCCCCCCchhhHHHhhhcccccccHHHHhHHHHHHHhcccCCceEEEEEEECCCCCHHHHHHHHHHHHhC
Confidence 34444443 44668899998843 445677777777776 57777888999999999999
Q ss_pred ccc
Q psy3275 72 YTK 74 (114)
Q Consensus 72 ~~~ 74 (114)
+-=
T Consensus 112 ~~P 114 (153)
T PF14401_consen 112 PCP 114 (153)
T ss_pred CCc
Confidence 853
No 29
>PRK04007 rps28e 30S ribosomal protein S28e; Validated
Probab=23.33 E-value=51 Score=22.66 Aligned_cols=20 Identities=45% Similarity=0.572 Sum_probs=16.0
Q ss_pred cccccc-ceeeehhhHHHhhh
Q psy3275 5 RHSQVR-GISIKLQEEERERR 24 (114)
Q Consensus 5 q~gpvr-gis~klqEeererr 24 (114)
-+|||| |=-|-|-|-|||-|
T Consensus 45 VkGPVR~GDIl~L~EteREAr 65 (70)
T PRK04007 45 VKGPVRVGDILMLRETEREAR 65 (70)
T ss_pred ccCCcccCcEEEEhhhhhHHH
Confidence 479998 56678889999866
No 30
>PF14251 DUF4346: Domain of unknown function (DUF4346)
Probab=20.63 E-value=29 Score=26.02 Aligned_cols=48 Identities=25% Similarity=0.361 Sum_probs=34.8
Q ss_pred ccccceeechHHHHHHHHhCCc--------cchhhhHHHHHHHHHhccccCCchhh
Q psy3275 34 LEQDVIEVDSETKDMLRMLGRV--------RTKTVKKASRVIIEKYYTKLTLDFHT 81 (114)
Q Consensus 34 ld~~~i~vd~~t~~ml~~mg~V--------Rtk~VKr~a~~Lieky~~~ft~DF~~ 81 (114)
+|...+.+||+|-+-|.--|.+ +.++-|.+...|+|.-..++-..+++
T Consensus 40 I~~~Gla~Dpetge~i~~~g~~~r~~~~~~~GrTAKeL~~~I~e~~~~~~vs~ldH 95 (119)
T PF14251_consen 40 IDDKGLAVDPETGEVIPCRGKVKRTPSIVFKGRTAKELYITIIEEQRPCLVSRLDH 95 (119)
T ss_pred cCcccceeCCCCCCEEEEecCCCCceeEEEecCCHHHHHHHHHhccCCCccchhHH
Confidence 4556799999999988877655 34667777777888766666666654
Done!