Query psy3275
Match_columns 114
No_of_seqs 195 out of 348
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 20:54:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rq6_A 30S ribosomal protein S 100.0 2E-34 7E-39 190.2 -1.2 61 52-112 1-61 (62)
2 3j20_S 30S ribosomal protein S 100.0 4.8E-34 1.6E-38 190.8 -0.8 60 52-111 1-60 (67)
3 3iz6_Q 40S ribosomal protein S 100.0 1.3E-32 4.3E-37 205.5 0.3 58 1-58 58-115 (141)
4 3u5c_R RP51A, 40S ribosomal pr 100.0 4.4E-32 1.5E-36 201.6 2.7 55 1-55 58-116 (136)
5 2xzm_V RPS17E; ribosome, trans 100.0 6.2E-32 2.1E-36 199.6 3.0 57 1-57 58-114 (130)
6 2xzm_V RPS17E; ribosome, trans 100.0 5.9E-31 2E-35 194.4 -0.5 61 52-112 1-61 (130)
7 3u5c_R RP51A, 40S ribosomal pr 100.0 5.2E-31 1.8E-35 195.9 -0.8 60 52-111 1-60 (136)
8 3iz6_Q 40S ribosomal protein S 100.0 8.7E-31 3E-35 195.6 -1.0 60 52-111 1-60 (141)
9 3k4t_A Virion-associated prote 50.8 3.2 0.00011 29.0 -0.1 61 30-91 10-72 (95)
10 1p94_A Plasmid partition prote 46.6 13 0.00043 24.3 2.4 36 37-72 37-72 (76)
11 2k9i_A Plasmid PRN1, complete 43.3 40 0.0014 18.9 4.1 35 38-72 13-51 (55)
12 1z9e_A PC4 and SFRS1 interacti 42.7 18 0.0006 26.2 2.8 51 41-91 48-101 (127)
13 1orn_A Endonuclease III; DNA r 39.9 20 0.00067 26.9 2.8 30 45-74 76-107 (226)
14 2pl3_A Probable ATP-dependent 39.2 51 0.0018 23.0 4.8 58 13-70 1-61 (236)
15 1kea_A Possible G-T mismatches 38.8 23 0.00079 26.2 3.1 32 44-75 77-110 (221)
16 2kel_A SVTR protein, uncharact 38.8 24 0.00081 21.5 2.6 35 38-72 17-51 (56)
17 2abk_A Endonuclease III; DNA-r 38.7 21 0.00073 26.1 2.8 29 45-73 72-102 (211)
18 3n5n_X A/G-specific adenine DN 30.3 34 0.0011 27.1 2.9 35 44-78 91-126 (287)
19 1or4_A Heme-based aerotactic t 28.3 29 0.00099 24.5 2.0 20 59-78 57-76 (178)
20 1kg2_A A/G-specific adenine gl 26.8 48 0.0017 24.5 3.1 31 45-75 73-104 (225)
21 2cpg_A REPA protein, transcrip 25.0 79 0.0027 17.0 3.1 32 38-69 6-41 (45)
22 2gpe_A Bifunctional protein PU 24.2 1E+02 0.0035 17.3 4.0 36 38-73 7-46 (52)
23 3f6n_A Virion-associated prote 21.8 15 0.0005 26.9 -0.6 57 34-91 14-72 (129)
24 3u5c_c S33, YS27, 40S ribosoma 21.2 16 0.00055 23.9 -0.5 20 5-24 44-64 (67)
25 2ay0_A Bifunctional PUTA prote 20.8 1.3E+02 0.0045 18.0 3.8 37 37-73 6-46 (58)
No 1
>1rq6_A 30S ribosomal protein S17E; alpha protein, structural genomics, protein structure initiative, PSI, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.15.1
Probab=99.97 E-value=2e-34 Score=190.20 Aligned_cols=61 Identities=41% Similarity=0.569 Sum_probs=59.2
Q ss_pred hCCccchhhhHHHHHHHHHhccccCCchhhhhhhhhhhccccCCceeeeeeeeeeeeeccc
Q psy3275 52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTLTA 112 (114)
Q Consensus 52 mg~VRtk~VKr~a~~Lieky~~~ft~DF~~NK~vv~eia~I~SKklRNkIAGYVTh~~~~~ 112 (114)
||+|||++||++|++|+|+||++||+|||+||++|+|+|+||||+|||+|||||||+++..
T Consensus 1 MG~vr~k~iK~~a~~liekY~~~~t~DF~~NK~~v~e~a~i~SK~lRNkIAGYvT~l~k~~ 61 (62)
T 1rq6_A 1 MGNIRTSFVKRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAGYITRIISQQ 61 (62)
T ss_dssp CCCCCCHHHHHHHHHHHTTSCCCCCCCHHHHHHHHHTTCCCSSTTHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHhHhHhcCCHHHhhHHHHHHcccccHhHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999999999999999999999999999999999988754
No 2
>3j20_S 30S ribosomal protein S17E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.97 E-value=4.8e-34 Score=190.78 Aligned_cols=60 Identities=32% Similarity=0.579 Sum_probs=58.6
Q ss_pred hCCccchhhhHHHHHHHHHhccccCCchhhhhhhhhhhccccCCceeeeeeeeeeeeecc
Q psy3275 52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTLT 111 (114)
Q Consensus 52 mg~VRtk~VKr~a~~Lieky~~~ft~DF~~NK~vv~eia~I~SKklRNkIAGYVTh~~~~ 111 (114)
||+|||++||++|++|+|+||++||+|||+||++|+|+|+||||+|||+|||||||+++.
T Consensus 1 MG~vr~k~VKr~a~~liekY~~~~t~DF~~NK~vv~eia~i~SKklRNkIAGYvT~l~k~ 60 (67)
T 3j20_S 1 MGKIRQGFIKRVARELVNKYPNEFTTDFEHNKKKVQELTNVTSKKIRNRIAGYVTKLVRM 60 (67)
T ss_dssp CCCCCCHHHHHHHHHHHHHSGGGCCSCHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHhhhhhcccHHHhhHHHHHHhcccchhhhHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999998764
No 3
>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=1.3e-32 Score=205.53 Aligned_cols=58 Identities=57% Similarity=0.812 Sum_probs=55.2
Q ss_pred CcccccccccceeeehhhHHHhhhcCCCcccccccccceeechHHHHHHHHhCCccch
Q psy3275 1 MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRMLGRVRTK 58 (114)
Q Consensus 1 mkriq~gpvrgis~klqEeererr~n~vp~~s~ld~~~i~vd~~t~~ml~~mg~VRtk 58 (114)
|||||+||||||||||||||||||||||||+|+||++.|+|||||+|||++||+-...
T Consensus 58 mKriq~GpvrgisiklqEeERerrdnyvpe~S~ld~~~ieVD~dT~eMlk~l~~~~~~ 115 (141)
T 3iz6_Q 58 MRRIQRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLP 115 (141)
T ss_dssp HHHHCSCCCCCSSCCSSCCCCCSCSSSSCCCSEEEECCCCSSHHHHHHHHHTTTTCCS
T ss_pred hhccccCCccccceehhHHHHHHHhccCCccccccccceeECHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999999999999999999999999985443
No 4
>3u5c_R RP51A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Q 3o30_K 3o2z_K 3u5g_R
Probab=99.97 E-value=4.4e-32 Score=201.64 Aligned_cols=55 Identities=60% Similarity=0.937 Sum_probs=48.7
Q ss_pred CcccccccccceeeehhhHHHhhhcCCCccccccccc----ceeechHHHHHHHHhCCc
Q psy3275 1 MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQD----VIEVDSETKDMLRMLGRV 55 (114)
Q Consensus 1 mkriq~gpvrgis~klqEeererr~n~vp~~s~ld~~----~i~vd~~t~~ml~~mg~V 55 (114)
|||||+||||||||||||||||||||||||+|+||++ .|+|||||+|||++||+-
T Consensus 58 mKriq~GpvrgisiklqEeERerrdnyvpe~S~ld~~~~~~~ieVD~~T~~mlk~l~~~ 116 (136)
T 3u5c_R 58 MKRIQKGPVRGISFKLQEEERERKDQYVPEVSALDLSRSNGVLNVDNQTSDLVKSLGLK 116 (136)
T ss_dssp HHHHTTSCBTTBCCSHHHHHHHTTCCCCSSCC-----CCSSSCCBCHHHHHHHHHHCCC
T ss_pred hcccccCCcccceeehhHHHHHHhhccCCcchhhcccccCCceEEChHHHHHHHHcCCC
Confidence 7999999999999999999999999999999999998 899999999999999985
No 5
>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_V
Probab=99.97 E-value=6.2e-32 Score=199.64 Aligned_cols=57 Identities=53% Similarity=0.832 Sum_probs=54.5
Q ss_pred CcccccccccceeeehhhHHHhhhcCCCcccccccccceeechHHHHHHHHhCCccc
Q psy3275 1 MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRMLGRVRT 57 (114)
Q Consensus 1 mkriq~gpvrgis~klqEeererr~n~vp~~s~ld~~~i~vd~~t~~ml~~mg~VRt 57 (114)
|||||+|||||||||||||||||||||||++|+||+++|+|||||+|||++||+-..
T Consensus 58 mkriq~gpvrgis~klqEeererrd~yvPe~S~ld~~~i~vD~~t~emlk~l~~~~~ 114 (130)
T 2xzm_V 58 MKRIQKGPVRGISLKVQEEERERRLDYVPEKSIIDIEKVTIDNETKEMLKKLGYQNI 114 (130)
T ss_dssp HHHTTTSCCTTCCCTTTTHHHHHTTSCCCSSCSSCSSSCCBCHHHHHHHHHHTCSSS
T ss_pred hhhcccCcccccccchhHHHHHhhhccCCcccccccceeEECHHHHHHHHHcCCCCC
Confidence 789999999999999999999999999999999999999999999999999997543
No 6
>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_V
Probab=99.96 E-value=5.9e-31 Score=194.45 Aligned_cols=61 Identities=56% Similarity=0.796 Sum_probs=58.3
Q ss_pred hCCccchhhhHHHHHHHHHhccccCCchhhhhhhhhhhccccCCceeeeeeeeeeeeeccc
Q psy3275 52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTLTA 112 (114)
Q Consensus 52 mg~VRtk~VKr~a~~Lieky~~~ft~DF~~NK~vv~eia~I~SKklRNkIAGYVTh~~~~~ 112 (114)
||+|||++||++|++|+|+||++||+|||+||++|+++|+||||+|||+|||||||+++..
T Consensus 1 MG~Vrtk~VKr~a~~liEkY~~~ft~DFe~NK~vv~eia~I~SKklRNkIAGYVThlmkri 61 (130)
T 2xzm_V 1 MGRVRTKTVKRAAKSLIEHYYSKLTNDFHFNKKILSEVAQVPSKRLRNKIAGFATHLMKRI 61 (130)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHSBCCSHHHHHHHHHHHHHHHHHT
T ss_pred CCCcchHHHHHHHHHHHHHHHhhhcCCHHHhhHHHHHHccCCChhheecccchhhhHhhhc
Confidence 8999999999999999999999999999999999999999999999999999999988754
No 7
>3u5c_R RP51A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Q 3o30_K 3o2z_K 3u5g_R
Probab=99.96 E-value=5.2e-31 Score=195.87 Aligned_cols=60 Identities=63% Similarity=0.938 Sum_probs=57.7
Q ss_pred hCCccchhhhHHHHHHHHHhccccCCchhhhhhhhhhhccccCCceeeeeeeeeeeeecc
Q psy3275 52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTLT 111 (114)
Q Consensus 52 mg~VRtk~VKr~a~~Lieky~~~ft~DF~~NK~vv~eia~I~SKklRNkIAGYVTh~~~~ 111 (114)
||+|||++||++|++|+|+||++||+|||+||++|+++|+||||+|||+|||||||+++.
T Consensus 1 MG~Vrtk~VKr~Ar~IiEkY~~~ft~DFetNK~vveeia~I~SKklRNkIAGYVThLmKr 60 (136)
T 3u5c_R 1 MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKR 60 (136)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCCSCHHHHHHHHHHHEECSCHHHHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHhhhhhcCcHHhhhHHHHHhhcccchhheeehhhhhhhhhcc
Confidence 899999999999999999999999999999999999999999999999999999998864
No 8
>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.95 E-value=8.7e-31 Score=195.62 Aligned_cols=60 Identities=60% Similarity=0.924 Sum_probs=58.6
Q ss_pred hCCccchhhhHHHHHHHHHhccccCCchhhhhhhhhhhccccCCceeeeeeeeeeeeecc
Q psy3275 52 LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAGGLIKRTLT 111 (114)
Q Consensus 52 mg~VRtk~VKr~a~~Lieky~~~ft~DF~~NK~vv~eia~I~SKklRNkIAGYVTh~~~~ 111 (114)
||+|||++||++|++|+|+||++||+|||+||++|+++|+||||+|||+|||||||+++.
T Consensus 1 MG~Vrtk~VKr~Ar~IiEkY~~~ft~DFetNK~vveeia~I~SKklRNkIAGYVThlmKr 60 (141)
T 3iz6_Q 1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRR 60 (141)
T ss_dssp CCCCCCSHHHHHHHHHHTTTCCCCSCCHHHHHHHHHHSSSCCCTTTHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHhhhhhcCcHHhhhHHHHHhccccchhhhhhhhheeeehhhc
Confidence 899999999999999999999999999999999999999999999999999999998864
No 9
>3k4t_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding protein, P binding; 2.59A {Cauliflower mosaic virus}
Probab=50.82 E-value=3.2 Score=29.03 Aligned_cols=61 Identities=23% Similarity=0.359 Sum_probs=43.9
Q ss_pred ccccccccceeechHHHHHHHHhCCccc--hhhhHHHHHHHHHhccccCCchhhhhhhhhhhcc
Q psy3275 30 EVSALEQDVIEVDSETKDMLRMLGRVRT--KTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAI 91 (114)
Q Consensus 30 ~~s~ld~~~i~vd~~t~~ml~~mg~VRt--k~VKr~a~~Lieky~~~ft~DF~~NK~vv~eia~ 91 (114)
|+|.+-++.-..-.++..||..+|.-.| ..+..+|-.||..--+.. ++-+=||+++++++.
T Consensus 10 Ei~~~~~~~~~~~~~i~aiL~~~gs~~p~~~~lEsiAAKIIkDisdkI-d~C~Cnkei~e~L~~ 72 (95)
T 3k4t_A 10 EVSEILSDQKSMKADIKAILELLGSQNPIKESLETVAAKIVNDLTKLI-NDCPCNKEILEALGT 72 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHH-HHCTTHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHH-hcCcchHHHHHHHcc
Confidence 4455545555667889999999999988 777777777776554433 457788999988866
No 10
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=46.56 E-value=13 Score=24.29 Aligned_cols=36 Identities=6% Similarity=0.215 Sum_probs=32.1
Q ss_pred cceeechHHHHHHHHhCCccchhhhHHHHHHHHHhc
Q psy3275 37 DVIEVDSETKDMLRMLGRVRTKTVKKASRVIIEKYY 72 (114)
Q Consensus 37 ~~i~vd~~t~~ml~~mg~VRtk~VKr~a~~Lieky~ 72 (114)
-+|.+|++....||.+-.-+..++..+-+++++.|=
T Consensus 37 lti~i~~~lh~rlK~~Aa~~g~Smsdvvreli~~~L 72 (76)
T 1p94_A 37 VNVNFDEEKHTRFKAACARKGTSITDVVNQLVDNWL 72 (76)
T ss_dssp CCEEEEHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred EEEEcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 379999999999999988888899999999998874
No 11
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=43.31 E-value=40 Score=18.92 Aligned_cols=35 Identities=11% Similarity=0.070 Sum_probs=26.4
Q ss_pred ceeechHHHHHHHHh----CCccchhhhHHHHHHHHHhc
Q psy3275 38 VIEVDSETKDMLRML----GRVRTKTVKKASRVIIEKYY 72 (114)
Q Consensus 38 ~i~vd~~t~~ml~~m----g~VRtk~VKr~a~~Lieky~ 72 (114)
.|.+|++..+.|+.+ |.-+...|..+....++.+.
T Consensus 13 ~vrl~~el~~~l~~~a~~~g~s~s~~ir~ai~~~l~~~~ 51 (55)
T 2k9i_A 13 GVYIPQEWHDRLMEIAKEKNLTLSDVCRLAIKEYLDNHD 51 (55)
T ss_dssp EEEECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHC
T ss_pred EEEcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhH
Confidence 588999999988876 77677777777666666554
No 12
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=42.69 E-value=18 Score=26.20 Aligned_cols=51 Identities=8% Similarity=0.070 Sum_probs=28.9
Q ss_pred echHHHHHHHHh-CCccchhhhHHHHHHHHHhcccc--CCchhhhhhhhhhhcc
Q psy3275 41 VDSETKDMLRML-GRVRTKTVKKASRVIIEKYYTKL--TLDFHTNKRICEEIAI 91 (114)
Q Consensus 41 vd~~t~~ml~~m-g~VRtk~VKr~a~~Lieky~~~f--t~DF~~NK~vv~eia~ 91 (114)
=+|+.-+.|+.+ .++-...|...|..|..+|...| +..++.-..+|.+...
T Consensus 48 Rnpe~V~TlkklRrY~gnq~Ir~kA~~iY~kFK~lf~~geg~~fw~~~~~~~~~ 101 (127)
T 1z9e_A 48 KHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNMFLVGEGDSVITQVLNKSLA 101 (127)
T ss_dssp GGHHHHHHHHHHTTCTTCSSHHHHHHHHHHHHHHHHHC----------------
T ss_pred hChHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 356666777777 66677899999999999999999 5555555666665443
No 13
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=39.95 E-value=20 Score=26.86 Aligned_cols=30 Identities=20% Similarity=0.483 Sum_probs=24.4
Q ss_pred HHHHHHHhCCc--cchhhhHHHHHHHHHhccc
Q psy3275 45 TKDMLRMLGRV--RTKTVKKASRVIIEKYYTK 74 (114)
Q Consensus 45 t~~ml~~mg~V--Rtk~VKr~a~~Lieky~~~ 74 (114)
..++|+.+|+- |.++|+.+|+.+++.|...
T Consensus 76 l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g~ 107 (226)
T 1orn_A 76 LEQDIRSIGLYRNKARNIQKLCAMLIDKYNGE 107 (226)
T ss_dssp HHHHTGGGSSHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Confidence 45678889984 7899999999999987543
No 14
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=39.25 E-value=51 Score=22.99 Aligned_cols=58 Identities=14% Similarity=0.084 Sum_probs=39.0
Q ss_pred eeehhhHHHhh-hcCCCcc--cccccccceeechHHHHHHHHhCCccchhhhHHHHHHHHH
Q psy3275 13 SIKLQEEERER-RDNYVPE--VSALEQDVIEVDSETKDMLRMLGRVRTKTVKKASRVIIEK 70 (114)
Q Consensus 13 s~klqEeerer-r~n~vp~--~s~ld~~~i~vd~~t~~ml~~mg~VRtk~VKr~a~~Liek 70 (114)
|+++++++=+| +.+|-+. .+..+-+.+.+++...+.|+.+|.-.+.-+-..|...+-.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~ 61 (236)
T 2pl3_A 1 SMQVERESISRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQ 61 (236)
T ss_dssp CCHHHHHHHHHHHHTTTTCCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHT
T ss_pred CccccHhHHHHHHhccccCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC
Confidence 56666665544 4555442 2222345577999999999999999888887777665543
No 15
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=38.82 E-value=23 Score=26.23 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=25.3
Q ss_pred HHHHHHHHhCC--ccchhhhHHHHHHHHHhcccc
Q psy3275 44 ETKDMLRMLGR--VRTKTVKKASRVIIEKYYTKL 75 (114)
Q Consensus 44 ~t~~ml~~mg~--VRtk~VKr~a~~Lieky~~~f 75 (114)
+..++|+.+|+ .|.++|+.+|+.+++.|...+
T Consensus 77 ~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g~~ 110 (221)
T 1kea_A 77 EIAKDIKEIGLSNQRAEQLKELARVVINDYGGRV 110 (221)
T ss_dssp HHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 34577788998 488999999999999875433
No 16
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=38.78 E-value=24 Score=21.53 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=30.4
Q ss_pred ceeechHHHHHHHHhCCccchhhhHHHHHHHHHhc
Q psy3275 38 VIEVDSETKDMLRMLGRVRTKTVKKASRVIIEKYY 72 (114)
Q Consensus 38 ~i~vd~~t~~ml~~mg~VRtk~VKr~a~~Lieky~ 72 (114)
.|.+||+...-|+.+--.+-+.+..+..+.|+.|-
T Consensus 17 ~vrId~eLH~rlk~~Aa~~g~Sln~~i~eAL~~yl 51 (56)
T 2kel_A 17 GIYMDKDLKTRLKVYCAKNNLQLTQAIEEAIKEYL 51 (56)
T ss_dssp EEEEEHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred EEEeCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 48999999999999887778888888888888874
No 17
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=38.75 E-value=21 Score=26.12 Aligned_cols=29 Identities=17% Similarity=0.435 Sum_probs=23.6
Q ss_pred HHHHHHHhCC--ccchhhhHHHHHHHHHhcc
Q psy3275 45 TKDMLRMLGR--VRTKTVKKASRVIIEKYYT 73 (114)
Q Consensus 45 t~~ml~~mg~--VRtk~VKr~a~~Lieky~~ 73 (114)
..++|+.+|+ .|.++|+.+|+.+++.|..
T Consensus 72 l~~~i~~~G~~~~KA~~l~~~a~~~~~~~~g 102 (211)
T 2abk_A 72 VKTYIKTIGLYNSKAENIIKTCRILLEQHNG 102 (211)
T ss_dssp HHHHHTTSTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 4566888897 4789999999999998754
No 18
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=30.30 E-value=34 Score=27.05 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=26.7
Q ss_pred HHHHHHHHhCCc-cchhhhHHHHHHHHHhccccCCc
Q psy3275 44 ETKDMLRMLGRV-RTKTVKKASRVIIEKYYTKLTLD 78 (114)
Q Consensus 44 ~t~~ml~~mg~V-Rtk~VKr~a~~Lieky~~~ft~D 78 (114)
+..++|+.+|+- |-++|+.+|+.|++.|...+..+
T Consensus 91 el~~~ir~lG~~~KA~~L~~~A~~i~~~~~g~~p~~ 126 (287)
T 3n5n_X 91 EVNQLWAGLGYYSRGRRLQEGARKVVEELGGHMPRT 126 (287)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHSTTCCCSS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 445778888863 66799999999999987665544
No 19
>1or4_A Heme-based aerotactic transducer hemat; globin fold, signaling protein; HET: HEM; 2.15A {Bacillus subtilis} SCOP: a.1.1.2 PDB: 1or6_A*
Probab=28.28 E-value=29 Score=24.48 Aligned_cols=20 Identities=15% Similarity=0.438 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHhccccCCc
Q psy3275 59 TVKKASRVIIEKYYTKLTLD 78 (114)
Q Consensus 59 ~VKr~a~~Lieky~~~ft~D 78 (114)
.+...+..|++.||+++..+
T Consensus 57 ~l~~~~~~ivd~FY~~l~~~ 76 (178)
T 1or4_A 57 LIQENIVNIVDAFYKNLDHE 76 (178)
T ss_dssp HHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 44555566777777776644
No 20
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=26.77 E-value=48 Score=24.48 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=23.0
Q ss_pred HHHHHHHhCCc-cchhhhHHHHHHHHHhcccc
Q psy3275 45 TKDMLRMLGRV-RTKTVKKASRVIIEKYYTKL 75 (114)
Q Consensus 45 t~~ml~~mg~V-Rtk~VKr~a~~Lieky~~~f 75 (114)
..++|+.+|+- |.++|+.+|+.|++.|...+
T Consensus 73 l~~~i~~~G~~~kA~~l~~~a~~i~~~~~g~~ 104 (225)
T 1kg2_A 73 VLHLWTGLGYYARARNLHKAAQQVATLHGGKF 104 (225)
T ss_dssp HHHHHTTSCCTHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHhCCCc
Confidence 34566778853 67899999999999875433
No 21
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=25.05 E-value=79 Score=17.03 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=22.2
Q ss_pred ceeechHHHHHHHH----hCCccchhhhHHHHHHHH
Q psy3275 38 VIEVDSETKDMLRM----LGRVRTKTVKKASRVIIE 69 (114)
Q Consensus 38 ~i~vd~~t~~ml~~----mg~VRtk~VKr~a~~Lie 69 (114)
.|.+|+++.+-|+. .|.-+...|..+....++
T Consensus 6 tv~l~~~l~~~Ld~~a~~~g~srS~~ir~ai~~~l~ 41 (45)
T 2cpg_A 6 TITLSESVLENLEKMAREMGLSKSAMISVALENYKK 41 (45)
T ss_dssp EEEEEHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred EEecCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 47788888887775 477677777666655554
No 22
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=24.20 E-value=1e+02 Score=17.30 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=27.5
Q ss_pred ceeechHHHHHHHHh----CCccchhhhHHHHHHHHHhcc
Q psy3275 38 VIEVDSETKDMLRML----GRVRTKTVKKASRVIIEKYYT 73 (114)
Q Consensus 38 ~i~vd~~t~~ml~~m----g~VRtk~VKr~a~~Lieky~~ 73 (114)
.|.+|.++.+-|+.+ |+-+...|+.+-..-++....
T Consensus 7 sirl~~~l~~~l~~lA~~~~rs~s~lir~Ai~~yl~~~e~ 46 (52)
T 2gpe_A 7 GVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLEN 46 (52)
T ss_dssp EEEEEHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHS
T ss_pred EEECCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 578888888888876 888888888777777765543
No 23
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=21.82 E-value=15 Score=26.86 Aligned_cols=57 Identities=19% Similarity=0.331 Sum_probs=41.1
Q ss_pred ccccceeechHHHHHHHHhCCccc--hhhhHHHHHHHHHhccccCCchhhhhhhhhhhcc
Q psy3275 34 LEQDVIEVDSETKDMLRMLGRVRT--KTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAI 91 (114)
Q Consensus 34 ld~~~i~vd~~t~~ml~~mg~VRt--k~VKr~a~~Lieky~~~ft~DF~~NK~vv~eia~ 91 (114)
+-.++.++-.++++||+..|...+ ..+..+|-.||..--+.. ++-+=||+++++++.
T Consensus 14 ~~~~i~~l~~~Ik~il~~~~st~~~~~~lEsiAAKIIkDisdkI-d~CeCnkei~e~L~~ 72 (129)
T 3f6n_A 14 ILSDQKSMKADIKAILELLGSQNPIKESLETVAAKIVNDLTKLI-NDCPCNKEILEALGT 72 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH-HTCTTHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHHHHHHHHHH-hcCcchHHHHHHHcc
Confidence 334556677788999999998777 666677777776555433 457888999998876
No 24
>3u5c_c S33, YS27, 40S ribosomal protein S28-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Y 3o30_R 3o2z_R 3u5g_c 3iz6_Y
Probab=21.19 E-value=16 Score=23.91 Aligned_cols=20 Identities=40% Similarity=0.428 Sum_probs=15.5
Q ss_pred cccccc-ceeeehhhHHHhhh
Q psy3275 5 RHSQVR-GISIKLQEEERERR 24 (114)
Q Consensus 5 q~gpvr-gis~klqEeererr 24 (114)
-+|||| |=-|.|.|-|||-|
T Consensus 44 VkGPVR~GDIl~L~EtEREar 64 (67)
T 3u5c_c 44 VKGPVRENDILVLMESEREAR 64 (67)
T ss_dssp CSSCCCTTCEEEESSSSCCCC
T ss_pred ccCCcccCCEEEEehhhhhhh
Confidence 479998 66678899888854
No 25
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=20.83 E-value=1.3e+02 Score=17.95 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=27.1
Q ss_pred cceeechHHHHHHHHh----CCccchhhhHHHHHHHHHhcc
Q psy3275 37 DVIEVDSETKDMLRML----GRVRTKTVKKASRVIIEKYYT 73 (114)
Q Consensus 37 ~~i~vd~~t~~ml~~m----g~VRtk~VKr~a~~Lieky~~ 73 (114)
-.|.+|+++.+.|+.+ |+-+...|+.+-..-+++...
T Consensus 6 ~svrL~~el~~rL~~lA~~~~rs~s~lireAi~~yl~~~E~ 46 (58)
T 2ay0_A 6 MGVMLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLEN 46 (58)
T ss_dssp EEEEECHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCC-
T ss_pred eEeECCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 3578899999888765 777777887777777766433
Done!