RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3275
         (114 letters)



>gnl|CDD|216141 pfam00833, Ribosomal_S17e, Ribosomal S17. 
          Length = 122

 Score = 96.3 bits (240), Expect = 4e-27
 Identities = 46/60 (76%), Positives = 54/60 (90%), Gaps = 3/60 (5%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG---GLIKR 108
           +GRVRTKTVK+A+RVIIEKYY+KLTLDF TNKRIC+E+AIIP+K LRNKIAG    L+KR
Sbjct: 1   MGRVRTKTVKRAARVIIEKYYSKLTLDFQTNKRICDEVAIIPSKRLRNKIAGYVTHLMKR 60



 Score = 81.6 bits (202), Expect = 2e-21
 Identities = 37/53 (69%), Positives = 45/53 (84%)

Query: 1   MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRMLG 53
           MKR++   VRGIS+KLQEEERERRDNYVPEVS L+  +IEVD +TK+ML+ LG
Sbjct: 58  MKRIQRGPVRGISLKLQEEERERRDNYVPEVSELDVPLIEVDPDTKEMLKSLG 110


>gnl|CDD|240295 PTZ00154, PTZ00154, 40S ribosomal protein S17; Provisional.
          Length = 134

 Score = 95.9 bits (239), Expect = 9e-27
 Identities = 41/52 (78%), Positives = 49/52 (94%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +GRVRTKTVK+A+R I+EKYY+KLTLDFHTNK+I EE+AIIP+K LRNKIAG
Sbjct: 1   MGRVRTKTVKRAARQIVEKYYSKLTLDFHTNKKIVEEVAIIPSKRLRNKIAG 52



 Score = 75.4 bits (186), Expect = 6e-19
 Identities = 34/53 (64%), Positives = 42/53 (79%)

Query: 1   MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRMLG 53
           MKR++   VRGIS+KLQEEERERR +YVPE S ++ D I VD +TKDML+ LG
Sbjct: 58  MKRIQKGPVRGISLKLQEEERERRMDYVPEKSEVDIDNITVDQDTKDMLKSLG 110


>gnl|CDD|224301 COG1383, RPS17A, Ribosomal protein S17E [Translation, ribosomal
           structure and biogenesis].
          Length = 74

 Score = 64.7 bits (158), Expect = 3e-15
 Identities = 30/52 (57%), Positives = 39/52 (75%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +GR+R K VK+ +R +IEKY  K T DF TNKR+ EE+A I +K LRN+IAG
Sbjct: 1   MGRIRPKFVKRTARELIEKYPDKFTDDFETNKRLVEELANIQSKKLRNRIAG 52


>gnl|CDD|179234 PRK01151, rps17E, 30S ribosomal protein S17e; Validated.
          Length = 58

 Score = 54.1 bits (131), Expect = 2e-11
 Identities = 22/51 (43%), Positives = 34/51 (66%)

Query: 53  GRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           G +R K +K+ +  ++EKY    T DF TNK++ EE+  I +K +RN+IAG
Sbjct: 1   GNIRPKYIKRTAEELLEKYPDLFTTDFETNKKLVEELTNIESKKVRNRIAG 51


>gnl|CDD|218581 pfam05416, Peptidase_C37, Southampton virus-type processing
           peptidase.  Corresponds to Merops family C37.
           Norwalk-like viruses (NLVs), including the Southampton
           virus, cause acute non-bacterial gastroenteritis in
           humans. The NLV genome encodes three open reading frames
           (ORFs). ORF1 encodes a polyprotein, which is processed
           by the viral protease into six proteins.
          Length = 535

 Score = 27.1 bits (60), Expect = 2.1
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 2   KRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRMLGRVRTKTVK 61
           K++R  +    SI+   E+RER +  + E  A E D  E + E K   R+ G  +T+  +
Sbjct: 262 KKIREERGGKYSIQEYLEDRERYEEELAERQATEADFCE-EEEAKIRQRIFGLRKTRKQR 320

Query: 62  KASR 65
           K  R
Sbjct: 321 KEER 324


>gnl|CDD|234054 TIGR02904, spore_ysxE, spore coat protein YsxE.  Members of this
           family are homologs of the Bacillus subtilis spore coat
           protein CotS. Members of this family, designated YsxE,
           are found only in the family Bacillaceae, from among the
           endospore-forming members of the Firmicutes branch of
           the Bacteria. As a rule, the ysxE gene is found
           immediately downstream of spoVID, a gene necessary for
           spore coat assembly. The protein has been shown to be
           part of the spore coat [Cellular processes, Sporulation
           and germination].
          Length = 309

 Score = 26.3 bits (58), Expect = 4.3
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 40  EVDSETKDMLRMLGRVRTKTVK--KASRVIIEKYYTKLTLDFHTNKRICEE 88
           E + + + M + L  +  KTVK  + +   ++K+Y +    +       EE
Sbjct: 95  ERNYQHESMFQELALLHRKTVKTERVTEEELKKHYERTLSRWENIPEGLEE 145


>gnl|CDD|219191 pfam06822, DUF1235, Protein of unknown function (DUF1235).  This
           family contains a number of viral proteins of unknown
           function.
          Length = 265

 Score = 25.8 bits (57), Expect = 5.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 74  KLTLDFHTNKRICEEIAI 91
           +   D  T K +CE+I I
Sbjct: 172 RQLTDELTGKVVCEQILI 189


>gnl|CDD|116379 pfam07765, KIP1, KIP1-like protein.  This is a family of
          sequences found exclusively in plants. They are similar
          to kinase interacting protein 1 (KIP1), which has been
          found to interact with the kinase domain of PRK1, a
          receptor-like kinase. This particular region contains
          two coiled-coils, which are described as motifs
          involved in protein-protein interactions. It has also
          been suggested that the protein's coiled- coils allow
          it to dimerise in vivo.
          Length = 74

 Score = 24.7 bits (54), Expect = 7.3
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 5/41 (12%)

Query: 34 LEQDVIEVDSETKDMLRMLGRVRTKTVKKASRVIIEKYYTK 74
          LE+++ E+DS+ K+ML+++        K+A     E YY K
Sbjct: 16 LEENLQEMDSKVKEMLKLIEEDADSFAKRA-----EMYYKK 51


>gnl|CDD|178581 PLN03004, PLN03004, UDP-glycosyltransferase.
          Length = 451

 Score = 25.4 bits (55), Expect = 7.4
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 10/69 (14%)

Query: 32  SALEQDVIEVDSETKDMLRMLGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIA- 90
           S + + V+E D E  D+  M G    K + K+S +II  +     L+    K I EE+  
Sbjct: 182 SDMPKAVLERDDEVYDVFIMFG----KQLSKSSGIIINTFD---ALENRAIKAITEELCF 234

Query: 91  --IIPTKPL 97
             I P  PL
Sbjct: 235 RNIYPIGPL 243


>gnl|CDD|226405 COG3888, COG3888, Predicted transcriptional regulator
           [Transcription].
          Length = 321

 Score = 25.6 bits (56), Expect = 8.0
 Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 4/64 (6%)

Query: 30  EVSALEQDVIEVDSETKDMLRMLGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEI 89
              +       +  +  D L  L  +    VK++     E Y     LD    K   E I
Sbjct: 254 IEESYSWFRSSIRRDVIDSLSKLTNISYNIVKESL----ESYEFDYKLDLKEFKNYLEFI 309

Query: 90  AIIP 93
               
Sbjct: 310 GYPI 313


>gnl|CDD|177773 PLN00178, PLN00178, sulfite reductase.
          Length = 623

 Score = 25.5 bits (56), Expect = 8.5
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 53  GRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICE 87
           GR++ +  KKA R +IEKY   + L  + N  +C+
Sbjct: 415 GRIKGE-AKKALREVIEKYNLPVRLTPNQNLILCD 448


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.318    0.134    0.358 

Gapped
Lambda     K      H
   0.267   0.0816    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,775,307
Number of extensions: 501940
Number of successful extensions: 546
Number of sequences better than 10.0: 1
Number of HSP's gapped: 546
Number of HSP's successfully gapped: 41
Length of query: 114
Length of database: 10,937,602
Length adjustment: 78
Effective length of query: 36
Effective length of database: 7,477,990
Effective search space: 269207640
Effective search space used: 269207640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)