RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3275
         (114 letters)



>d1rq6a_ a.4.15.1 (A:) ribosomal protein S17e {Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 62

 Score = 83.5 bits (207), Expect = 2e-23
 Identities = 25/52 (48%), Positives = 36/52 (69%)

Query: 52  LGRVRTKTVKKASRVIIEKYYTKLTLDFHTNKRICEEIAIIPTKPLRNKIAG 103
           +G +RT  VK+ ++ +IE +  K T DF TNK++ EE + + TK LRNKIAG
Sbjct: 1   MGNIRTSFVKRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAG 52


>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 285

 Score = 24.7 bits (53), Expect = 2.8
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 29 PEVSALEQDVIEVDSETKDMLRMLGRVRTKTVKKASRVIIEKYYTK-LTLDFHTNKRICE 87
          P+   L +D  E+  E+  +   LG+     V   +     +   K L     + +   +
Sbjct: 2  PQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ 61

Query: 88 EIAII 92
          E  ++
Sbjct: 62 EAQVM 66


>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional
           regulator Rv1626 {Mycobacterium tuberculosis [TaxId:
           1773]}
          Length = 190

 Score = 24.0 bits (51), Expect = 4.6
 Identities = 11/70 (15%), Positives = 23/70 (32%)

Query: 1   MKRLRHSQVRGISIKLQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRMLGRVRTKTV 60
           + R R        +    E  E R         L+      + +    ++     R  T+
Sbjct: 119 VSRFREITALEGEVATLSERLETRKLVERAKGLLQTKHGMTEPDAFKWIQRAAMDRRTTM 178

Query: 61  KKASRVIIEK 70
           K+ + V++E 
Sbjct: 179 KRVAEVVLET 188


>d2oo2a1 a.8.11.1 (A:1-75) Hypothetical protein AF1782
          {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 75

 Score = 23.2 bits (50), Expect = 5.3
 Identities = 5/36 (13%), Positives = 14/36 (38%), Gaps = 4/36 (11%)

Query: 16 LQEEERERRDNYVPEVSALEQDVIEVDSETKDMLRM 51
          L+EE R     ++       ++ ++     +  +R 
Sbjct: 1  LEEELRRETLKWLE----RIEERVKEIEGDEGFMRN 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.358 

Gapped
Lambda     K      H
   0.267   0.0632    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 407,019
Number of extensions: 17391
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 11
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)