BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3276
(62 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7PXY4|SAP30_ANOGA Histone deacetylase complex subunit SAP30 homolog OS=Anopheles
gambiae GN=AGAP001654 PE=3 SV=4
Length = 174
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 46/57 (80%), Gaps = 2/57 (3%)
Query: 2 NGFSIGEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLDN 58
NGFS GEEDS GP D QICCL+DDG RC + GNASYSKRIQ+ VTQ+RLKL +D+
Sbjct: 5 NGFSTGEEDSRGPAD--QICCLLDDGERCRKQAGNASYSKRIQKTVTQRRLKLSIDS 59
>sp|Q17Q39|SAP30_AEDAE Histone deacetylase complex subunit SAP30 homolog OS=Aedes
aegypti GN=AAEL000149 PE=3 SV=1
Length = 173
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 44/56 (78%), Gaps = 2/56 (3%)
Query: 2 NGFSIGEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57
NGFS GEEDS GP D Q+CCL+DDG RC GNASYSKRIQ+ VTQ+RLKL +D
Sbjct: 4 NGFSTGEEDSRGPAD--QVCCLLDDGDRCRNQAGNASYSKRIQKTVTQRRLKLSID 57
>sp|A4FVD8|S30LA_XENLA Histone deacetylase complex subunit SAP30L-A OS=Xenopus laevis
GN=sap30l-a PE=2 SV=1
Length = 181
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 45/68 (66%), Gaps = 6/68 (8%)
Query: 1 MNGFSIGEEDSHGPTD-----LQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLH 55
MNGFS E+ GP Q CCL+D G RCPRP GNAS+SKR+Q+ ++QK+LKL
Sbjct: 1 MNGFSTEEDSRDGPPAQAAPFFGQTCCLIDGGERCPRPAGNASFSKRVQKSISQKKLKLD 60
Query: 56 LD-NFREL 62
+D N R L
Sbjct: 61 IDKNVRHL 68
>sp|Q9VXB3|SAP30_DROME Histone deacetylase complex subunit SAP30 homolog OS=Drosophila
melanogaster GN=Sap30 PE=1 SV=1
Length = 173
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 2 NGFSIGEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57
NGFS GEEDS G TD Q CCL+DD RC G ASYSKRIQ+ V QKRLKL D
Sbjct: 3 NGFSTGEEDSRGHTD--QTCCLIDDMERCRNQAGYASYSKRIQKTVAQKRLKLSSD 56
>sp|Q28H91|SP30L_XENTR Histone deacetylase complex subunit SAP30L OS=Xenopus tropicalis
GN=sap30l PE=2 SV=1
Length = 181
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 42/62 (67%), Gaps = 5/62 (8%)
Query: 1 MNGFSIGEEDSHGPTD-----LQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLH 55
MNGFS E+ GP Q CCL+D G RCPRP GNAS+SKR+Q+ ++QK+LKL
Sbjct: 1 MNGFSTEEDSRDGPPAQAAPFFGQTCCLIDGGERCPRPAGNASFSKRVQKSISQKKLKLD 60
Query: 56 LD 57
+D
Sbjct: 61 ID 62
>sp|Q2TAD4|S30LB_XENLA Histone deacetylase complex subunit SAP30L-B OS=Xenopus laevis
GN=sap30l-b PE=2 SV=1
Length = 181
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 42/62 (67%), Gaps = 5/62 (8%)
Query: 1 MNGFSIGEEDSHGPTD-----LQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLH 55
MNGFS E+ GP Q CCL+D G RCPRP GNAS+SKR+Q+ ++QK+LKL
Sbjct: 1 MNGFSTEEDSRDGPPAQAAPFFGQTCCLIDGGERCPRPAGNASFSKRVQKSISQKKLKLD 60
Query: 56 LD 57
+D
Sbjct: 61 ID 62
>sp|Q29IK8|SAP30_DROPS Histone deacetylase complex subunit SAP30 homolog OS=Drosophila
pseudoobscura pseudoobscura GN=Sap30 PE=3 SV=1
Length = 173
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 2 NGFSIGEEDSHGPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57
NGFS GEEDS G D Q CCL+DD RC G ASYSKRIQ+ V QKRL+L D
Sbjct: 3 NGFSTGEEDSRGHAD--QTCCLIDDMERCRNQAGYASYSKRIQKTVAQKRLRLSSD 56
>sp|Q6NYV5|SP30L_DANRE Histone deacetylase complex subunit SAP30L OS=Danio rerio
GN=sap30l PE=2 SV=1
Length = 178
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 43/61 (70%), Gaps = 5/61 (8%)
Query: 1 MNGFSIGEEDSH----GPTDLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHL 56
MNGFS EEDSH P Q CCL++D RC RP GNAS+SKRIQ+ ++Q++LKL +
Sbjct: 1 MNGFST-EEDSHDGPPAPPFFGQSCCLIEDAERCGRPAGNASFSKRIQKSISQRKLKLDI 59
Query: 57 D 57
D
Sbjct: 60 D 60
>sp|Q9HAJ7|SP30L_HUMAN Histone deacetylase complex subunit SAP30L OS=Homo sapiens
GN=SAP30L PE=1 SV=1
Length = 183
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 8/65 (12%)
Query: 1 MNGFSIGEEDSHGPTDLQ--------QICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRL 52
MNGFS E+ GP Q CCL++DG RC RP GNAS+SKR+Q+ ++QK+L
Sbjct: 1 MNGFSTEEDSREGPPAAPAAAAPGYGQSCCLIEDGERCVRPAGNASFSKRVQKSISQKKL 60
Query: 53 KLHLD 57
KL +D
Sbjct: 61 KLDID 65
>sp|Q5SQF8|SP30L_MOUSE Histone deacetylase complex subunit SAP30L OS=Mus musculus
GN=Sap30l PE=1 SV=1
Length = 182
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 7/64 (10%)
Query: 1 MNGFSIGEEDSHGPTDLQ-------QICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLK 53
MNGFS E+ GP Q CCL+ DG RC RP GNAS+SKR+Q+ ++QK+LK
Sbjct: 1 MNGFSTEEDSREGPPAAPAAAPGYGQSCCLIADGERCVRPAGNASFSKRVQKSISQKKLK 60
Query: 54 LHLD 57
L +D
Sbjct: 61 LDID 64
>sp|O75446|SAP30_HUMAN Histone deacetylase complex subunit SAP30 OS=Homo sapiens GN=SAP30
PE=1 SV=1
Length = 220
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 32/39 (82%)
Query: 19 QICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57
Q+CCL +DG RC R GNAS+SKRIQ+ ++QK++K+ LD
Sbjct: 65 QLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELD 103
>sp|O88574|SAP30_MOUSE Histone deacetylase complex subunit SAP30 OS=Mus musculus GN=Sap30
PE=1 SV=1
Length = 220
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 32/39 (82%)
Query: 19 QICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57
Q+CCL +DG RC R GNAS+SKRIQ+ ++QK++K+ LD
Sbjct: 65 QLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELD 103
>sp|Q3A585|ACCA_PELCD Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
GN=accA PE=3 SV=1
Length = 317
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 16 DLQQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLDNFREL 62
D+Q + C++D+ + P P+G A + + LK HLD+ ++L
Sbjct: 252 DIQNLGCVIDEVI--PEPLGGAHSDHKAAAEQVRICLKKHLDDLKDL 296
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,707,303
Number of Sequences: 539616
Number of extensions: 780936
Number of successful extensions: 1206
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1184
Number of HSP's gapped (non-prelim): 13
length of query: 62
length of database: 191,569,459
effective HSP length: 34
effective length of query: 28
effective length of database: 173,222,515
effective search space: 4850230420
effective search space used: 4850230420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)