Query psy3276
Match_columns 62
No_of_seqs 30 out of 32
Neff 2.4
Searched_HMMs 29240
Date Fri Aug 16 20:55:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kdp_A Histone deacetylase com 100.0 7.2E-32 2.5E-36 168.6 3.2 44 18-61 4-47 (71)
2 1m46_B IQ4, IQ4 motif from MYO 75.7 1.4 4.7E-05 22.7 1.5 16 39-54 9-24 (26)
3 4b2u_A S67; toxin, ICK; NMR {S 49.6 5.4 0.00019 21.7 0.8 11 24-34 5-15 (36)
4 2cxa_A Leucyl/phenylalanyl-tRN 32.6 9.8 0.00034 27.6 0.1 37 23-59 75-111 (256)
5 3djh_A Macrophage migration in 32.2 16 0.00055 21.4 1.0 38 19-57 54-92 (114)
6 1jy2_P Fibrinogen gamma-B chai 28.7 11 0.00038 21.5 -0.1 31 19-49 6-38 (48)
7 3fwu_A Macrophage migration in 22.0 62 0.0021 19.8 2.4 38 19-57 76-114 (133)
8 3t5s_A Gilaa.00834.A, macropha 18.3 1E+02 0.0035 18.8 2.8 38 19-57 76-114 (135)
9 2dwf_A Pulmonary surfactant-as 16.5 55 0.0019 17.5 1.1 11 38-48 6-16 (34)
10 2ab9_A Pro-SFTI-1; protein, be 15.9 57 0.0019 17.1 1.0 12 23-34 10-21 (31)
No 1
>2kdp_A Histone deacetylase complex subunit SAP30; SIN3, zinc finger motif, nucleic acid interaction, nucleus, repressor, transcription; NMR {Homo sapiens}
Probab=99.97 E-value=7.2e-32 Score=168.57 Aligned_cols=44 Identities=52% Similarity=0.946 Sum_probs=42.3
Q ss_pred CceeeeeeCCCccCCCCCCchhHHHHHHHHhhhhhccccccCCC
Q psy3276 18 QQICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLDNFRE 61 (62)
Q Consensus 18 gq~CCLiddgeRC~r~AGnASySKRIQKtV~QkklKL~~D~~~~ 61 (62)
+|+|||+||||||.||||||||||||||||+||+|||++|++|.
T Consensus 4 ~q~CcL~ddgerC~r~AgnasySKRIqKtvaq~~LKL~~d~~a~ 47 (71)
T 2kdp_A 4 GQLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELDKSAR 47 (71)
T ss_dssp SSBCCEEETTBCCCSBCCSCCCCHHHHHHHHHHCCSEEECTTCS
T ss_pred CcEEEEecCCcCCcCcccchhHHHHHHHHHHHHhheeeccCCCc
Confidence 39999999999999999999999999999999999999999874
No 2
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=75.71 E-value=1.4 Score=22.67 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=14.0
Q ss_pred hHHHHHHHHhhhhhcc
Q psy3276 39 YSKRIQQIVTQKRLKL 54 (62)
Q Consensus 39 ySKRIQKtV~QkklKL 54 (62)
.-|+|+|.+.||.||-
T Consensus 9 lqkkirkelkqrqlkq 24 (26)
T 1m46_B 9 LQKKIRKELKQRQLKQ 24 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5689999999999984
No 3
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=49.62 E-value=5.4 Score=21.67 Aligned_cols=11 Identities=45% Similarity=1.084 Sum_probs=9.3
Q ss_pred eeCCCccCCCC
Q psy3276 24 VDDGVRCPRPI 34 (62)
Q Consensus 24 iddgeRC~r~A 34 (62)
||=||||++|.
T Consensus 5 ielgercpnpr 15 (36)
T 4b2u_A 5 IELGERCPNPR 15 (36)
T ss_dssp CCTTSBCCCGG
T ss_pred eeccccCcCCC
Confidence 67899999984
No 4
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA, protein degradation, structural genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB: 2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A* 2z3p_A*
Probab=32.64 E-value=9.8 Score=27.56 Aligned_cols=37 Identities=5% Similarity=0.020 Sum_probs=30.5
Q ss_pred eeeCCCccCCCCCCchhHHHHHHHHhhhhhccccccC
Q psy3276 23 LVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLDNF 59 (62)
Q Consensus 23 LiddgeRC~r~AGnASySKRIQKtV~QkklKL~~D~~ 59 (62)
-..-..||.-+-..--.||+++|++.+.+..+.+|..
T Consensus 75 WwsP~pR~Vl~p~~~hisrSLrk~lr~~~f~vt~n~a 111 (256)
T 2cxa_A 75 WWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYA 111 (256)
T ss_dssp EECCSSEEEECGGGCCCCHHHHHHHHTCCCEEEESSC
T ss_pred eECCCCCEEeccccccCCHHHHHHHCCCCeEEEEcCc
Confidence 4445667777778888999999999999999998864
No 5
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=32.18 E-value=16 Score=21.38 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=24.5
Q ss_pred ceeeeee-CCCccCCCCCCchhHHHHHHHHhhhhhccccc
Q psy3276 19 QICCLVD-DGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57 (62)
Q Consensus 19 q~CCLid-dgeRC~r~AGnASySKRIQKtV~QkklKL~~D 57 (62)
..|++++ -.-....++-|..||+.|.+.+.+ +|.+..|
T Consensus 54 ~P~a~~~v~sig~~~~~~n~~~s~~i~~~l~~-~Lgi~~~ 92 (114)
T 3djh_A 54 EPCALCSLHSIGKIGGAQNRSYSKLLCGLLAE-RLRISPD 92 (114)
T ss_dssp SSCEEEEEEESSCCSHHHHHHHHHHHHHHHHH-HHCCCGG
T ss_pred CCEEEEEEEEccCCCHHHHHHHHHHHHHHHHH-HhCcCcc
Confidence 4477776 122234567789999999998854 4555443
No 6
>1jy2_P Fibrinogen gamma-B chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_P 2a45_I*
Probab=28.66 E-value=11 Score=21.52 Aligned_cols=31 Identities=32% Similarity=0.760 Sum_probs=26.9
Q ss_pred ceeeeeeC--CCccCCCCCCchhHHHHHHHHhh
Q psy3276 19 QICCLVDD--GVRCPRPIGNASYSKRIQQIVTQ 49 (62)
Q Consensus 19 q~CCLidd--geRC~r~AGnASySKRIQKtV~Q 49 (62)
+-||+.|| |.-|+-.-|=|.|--+-|.+|.+
T Consensus 6 ~~~Ci~d~rFGsYCPTTCGiadfL~~Yq~~vd~ 38 (48)
T 1jy2_P 6 DNCCILDERFGSYCPTTCGIADFLNNYQTSVDK 38 (48)
T ss_dssp CSSCCSBTTTBCEEECHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCcCCccccHHHHhcccccchhh
Confidence 34999998 56799999999999999998876
No 7
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=21.95 E-value=62 Score=19.78 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=25.3
Q ss_pred ceeeeee-CCCccCCCCCCchhHHHHHHHHhhhhhccccc
Q psy3276 19 QICCLVD-DGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57 (62)
Q Consensus 19 q~CCLid-dgeRC~r~AGnASySKRIQKtV~QkklKL~~D 57 (62)
..|++++ -.-....++-|..|+++|.+.+.+ +|.+..|
T Consensus 76 dP~a~v~i~sig~~~~e~n~~~s~~i~~~l~~-~LgI~~~ 114 (133)
T 3fwu_A 76 DPVACVRVEALGGYGPSEPEKVTSIVTAAITK-ECGIVAD 114 (133)
T ss_dssp SSCEEEEEECTTCCCTTHHHHHHHHHHHHHHH-HHCCCGG
T ss_pred CCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHH-HhCcChh
Confidence 4477776 222235568899999999998854 4555443
No 8
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=18.31 E-value=1e+02 Score=18.83 Aligned_cols=38 Identities=29% Similarity=0.470 Sum_probs=22.0
Q ss_pred ceeeeee-CCCccCCCCCCchhHHHHHHHHhhhhhccccc
Q psy3276 19 QICCLVD-DGVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57 (62)
Q Consensus 19 q~CCLid-dgeRC~r~AGnASySKRIQKtV~QkklKL~~D 57 (62)
..|++++ -.-....++-|..|||+|.+.+.+ +|.+..|
T Consensus 76 dp~a~v~i~sig~~t~e~n~~~s~~i~~~l~~-~Lgi~~~ 114 (135)
T 3t5s_A 76 DLCCFVDFYCIGVISQAKNPSISAAITGCLTQ-HFKVKPE 114 (135)
T ss_dssp CSCEEEEEECCC-----CCHHHHHHHHHHHHH-HHCCCGG
T ss_pred ceEEEEEEEEEEEEeccCCchHHHHHHHHHHH-hcccCcc
Confidence 3477766 222234778899999999998854 5555443
No 9
>2dwf_A Pulmonary surfactant-associated protein B; mini-B, SP-B, surfactant protein B, lipid associated protein, surface active protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 2jou_A
Probab=16.47 E-value=55 Score=17.50 Aligned_cols=11 Identities=36% Similarity=0.588 Sum_probs=8.7
Q ss_pred hhHHHHHHHHh
Q psy3276 38 SYSKRIQQIVT 48 (62)
Q Consensus 38 SySKRIQKtV~ 48 (62)
++-||||+.|-
T Consensus 6 tlikriq~vIP 16 (34)
T 2dwf_A 6 ALIKRIQAMIP 16 (34)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHhhcC
Confidence 67899998763
No 10
>2ab9_A Pro-SFTI-1; protein, beta-sheet, random coil, hydrolase inhibitor; NMR {Helianthus annuus}
Probab=15.91 E-value=57 Score=17.05 Aligned_cols=12 Identities=33% Similarity=0.825 Sum_probs=9.1
Q ss_pred eeeCCCccCCCC
Q psy3276 23 LVDDGVRCPRPI 34 (62)
Q Consensus 23 LiddgeRC~r~A 34 (62)
.|||..||....
T Consensus 10 tiedngrctksi 21 (31)
T 2ab9_A 10 TIEDNGRCTKSI 21 (31)
T ss_dssp SSCCCSSCCSSS
T ss_pred EEecCCeecccC
Confidence 478999998754
Done!