Query psy3276
Match_columns 62
No_of_seqs 30 out of 32
Neff 2.4
Searched_HMMs 13730
Date Fri Aug 16 20:55:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3276.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3276hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jata_ d.20.1.1 (A:) Ubiquiti 55.4 1.9 0.00014 25.7 1.0 14 36-49 1-14 (152)
2 d2cxaa1 d.108.1.6 (A:1-232) Le 38.8 3.2 0.00023 27.9 0.1 33 27-59 62-94 (232)
3 d1wyha1 g.39.1.3 (A:35-66) Fou 38.6 3.9 0.00028 20.6 0.4 13 28-40 3-15 (32)
4 d1x4ka1 g.39.1.3 (A:35-66) Fou 38.3 4.6 0.00034 20.2 0.7 13 28-40 3-15 (32)
5 d2a7la1 d.20.1.1 (A:1-117) Ubi 35.8 6 0.00044 22.2 1.0 13 37-49 2-14 (117)
6 d1feca2 c.3.1.5 (A:170-286) Tr 28.3 24 0.0018 18.7 2.8 38 21-59 47-84 (117)
7 d3bpya1 a.4.5.14 (A:93-177) Af 24.6 17 0.0012 20.4 1.6 19 31-49 2-20 (85)
8 d1wg8a1 a.60.13.1 (A:109-206) 19.8 11 0.00077 21.6 0.0 28 34-61 41-68 (98)
9 d2gdga1 d.80.1.3 (A:1-114) Mic 19.7 18 0.0013 20.3 1.0 38 19-57 54-92 (114)
10 d1lvla2 c.3.1.5 (A:151-265) Di 19.5 43 0.0031 17.7 2.6 37 21-58 47-83 (115)
No 1
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Probab=55.38 E-value=1.9 Score=25.71 Aligned_cols=14 Identities=36% Similarity=0.356 Sum_probs=12.1
Q ss_pred CchhHHHHHHHHhh
Q psy3276 36 NASYSKRIQQIVTQ 49 (62)
Q Consensus 36 nASySKRIQKtV~Q 49 (62)
.||.+|||+|-+++
T Consensus 1 ~~~~~rRl~~E~~~ 14 (152)
T d1jata_ 1 AASLPKRIIKETEK 14 (152)
T ss_dssp CCSCCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 48999999999875
No 2
>d2cxaa1 d.108.1.6 (A:1-232) Leucyl/phenylalanyl-tRNA-protein transferase, LFTR (Aat) {Escherichia coli [TaxId: 562]}
Probab=38.83 E-value=3.2 Score=27.86 Aligned_cols=33 Identities=6% Similarity=0.057 Sum_probs=27.1
Q ss_pred CCccCCCCCCchhHHHHHHHHhhhhhccccccC
Q psy3276 27 GVRCPRPIGNASYSKRIQQIVTQKRLKLHLDNF 59 (62)
Q Consensus 27 geRC~r~AGnASySKRIQKtV~QkklKL~~D~~ 59 (62)
..||.-+-..--.||+++|++.+++..+++|..
T Consensus 62 ~~R~vl~~~~~~iskslrk~lk~~~f~itin~~ 94 (232)
T d2cxaa1 62 DPRAVLWPESLHISRSMKRFHKRSPYRVTMNYA 94 (232)
T ss_dssp SSEEEECGGGCCCCHHHHHHHHTCCCEEEESSC
T ss_pred CCCEEECCCCcccChHHHHHHccCCceEEECch
Confidence 456666667778899999999999999999864
No 3
>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.58 E-value=3.9 Score=20.55 Aligned_cols=13 Identities=31% Similarity=0.874 Sum_probs=11.1
Q ss_pred CccCCCCCCchhH
Q psy3276 28 VRCPRPIGNASYS 40 (62)
Q Consensus 28 eRC~r~AGnASyS 40 (62)
.+|.+|.|+-||-
T Consensus 3 ~~C~qPIGtkSFi 15 (32)
T d1wyha1 3 SGCEQPLGSRSFV 15 (32)
T ss_dssp TTTCCBTTTSCEE
T ss_pred ccccCcccccccc
Confidence 3899999999984
No 4
>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.32 E-value=4.6 Score=20.23 Aligned_cols=13 Identities=46% Similarity=1.007 Sum_probs=11.2
Q ss_pred CccCCCCCCchhH
Q psy3276 28 VRCPRPIGNASYS 40 (62)
Q Consensus 28 eRC~r~AGnASyS 40 (62)
.+|.+|.|+-||-
T Consensus 3 ~~C~qPIGtksfi 15 (32)
T d1x4ka1 3 HRCQQPIGTKSFI 15 (32)
T ss_dssp SSSCCCCCSSSEE
T ss_pred ccccCcccccccc
Confidence 4899999999984
No 5
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.82 E-value=6 Score=22.22 Aligned_cols=13 Identities=38% Similarity=0.439 Sum_probs=10.7
Q ss_pred chhHHHHHHHHhh
Q psy3276 37 ASYSKRIQQIVTQ 49 (62)
Q Consensus 37 ASySKRIQKtV~Q 49 (62)
||.+|||||-+++
T Consensus 2 ~~~~kRL~kEl~~ 14 (117)
T d2a7la1 2 ASMQKRLQKELLA 14 (117)
T ss_dssp TTSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 5678999998865
No 6
>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}
Probab=28.27 E-value=24 Score=18.73 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=28.7
Q ss_pred eeeeeCCCccCCCCCCchhHHHHHHHHhhhhhccccccC
Q psy3276 21 CCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLDNF 59 (62)
Q Consensus 21 CCLiddgeRC~r~AGnASySKRIQKtV~QkklKL~~D~~ 59 (62)
-=++|-+++--+.. ...+++.+++.+.++.+++.....
T Consensus 47 Vtli~~~~~il~~~-d~~~~~~~~~~l~~~GI~v~~~~~ 84 (117)
T d1feca2 47 VDLAYRGDMILRGF-DSELRKQLTEQLRANGINVRTHEN 84 (117)
T ss_dssp EEEEESSSSSSTTS-CHHHHHHHHHHHHHTTEEEEETCC
T ss_pred cceecccccccccc-cchhhHHHHHHHhhCcEEEEcCCE
Confidence 34677777766443 467899999999999999887654
No 7
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.60 E-value=17 Score=20.44 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=15.9
Q ss_pred CCCCCCchhHHHHHHHHhh
Q psy3276 31 PRPIGNASYSKRIQQIVTQ 49 (62)
Q Consensus 31 ~r~AGnASySKRIQKtV~Q 49 (62)
+++-|+.||+.=|...|..
T Consensus 2 ~n~~~~~SY~~LI~~Ai~~ 20 (85)
T d3bpya1 2 RNAWGNQSYAELISQAIES 20 (85)
T ss_dssp CBTTBSCCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHh
Confidence 4677999999999988874
No 8
>d1wg8a1 a.60.13.1 (A:109-206) Putative methyltransferase TM0872, insert domain {Thermus thermophilus [TaxId: 274]}
Probab=19.76 E-value=11 Score=21.64 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=20.2
Q ss_pred CCCchhHHHHHHHHhhhhhccccccCCC
Q psy3276 34 IGNASYSKRIQQIVTQKRLKLHLDNFRE 61 (62)
Q Consensus 34 AGnASySKRIQKtV~QkklKL~~D~~~~ 61 (62)
-|.-.++++|.+.|-+.+-+=.|+.+.|
T Consensus 41 yGee~~a~~iA~~Iv~~R~~~~i~tT~d 68 (98)
T d1wg8a1 41 LGEEPQAYRIARAIVAAREKAPIETTTQ 68 (98)
T ss_dssp HHCCTTHHHHHHHHHHHHHHSCCCBHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHhccchhHH
Confidence 4666788999988877776666666544
No 9
>d2gdga1 d.80.1.3 (A:1-114) Microphage migration inhibition factor (MIF) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.73 E-value=18 Score=20.26 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=24.2
Q ss_pred ceeeeeeC-CCccCCCCCCchhHHHHHHHHhhhhhccccc
Q psy3276 19 QICCLVDD-GVRCPRPIGNASYSKRIQQIVTQKRLKLHLD 57 (62)
Q Consensus 19 q~CCLidd-geRC~r~AGnASySKRIQKtV~QkklKL~~D 57 (62)
..||++|= .----.+..|-.|||.|.+.+++ +|.+..|
T Consensus 54 ~P~a~~~l~siG~~~~~~n~~~s~~i~~~l~~-~LgI~~~ 92 (114)
T d2gdga1 54 DPCALCSLHSIGKIGGAQNRNYSKLLCGLLSD-RLHISPD 92 (114)
T ss_dssp SSCEEEEEEESSCCSHHHHHHHHHHHHHHHHH-HHCCCGG
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHH-HhCCCcc
Confidence 45888761 11125566788899999888764 4555443
No 10
>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}
Probab=19.52 E-value=43 Score=17.73 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=27.3
Q ss_pred eeeeeCCCccCCCCCCchhHHHHHHHHhhhhhcccccc
Q psy3276 21 CCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLDN 58 (62)
Q Consensus 21 CCLiddgeRC~r~AGnASySKRIQKtV~QkklKL~~D~ 58 (62)
-=|+|-+++--+.. ...++++++|.+.++.+++....
T Consensus 47 Vtlve~~~~il~~~-d~~~~~~l~~~l~~~gV~i~~~~ 83 (115)
T d1lvla2 47 VSVVEARERILPTY-DSELTAPVAESLKKLGIALHLGH 83 (115)
T ss_dssp EEEECSSSSSSTTS-CHHHHHHHHHHHHHHTCEEETTC
T ss_pred eEEEeeeccccccc-cchhHHHHHHHHHhhcceEEcCc
Confidence 45677776665444 56789999999999888887654
Done!