RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3276
         (62 letters)



>2kdp_A Histone deacetylase complex subunit SAP30; SIN3, zinc finger
          motif, nucleic acid interaction, nucleus, repressor,
          transcription; NMR {Homo sapiens}
          Length = 71

 Score = 60.5 bits (146), Expect = 1e-14
 Identities = 23/40 (57%), Positives = 32/40 (80%)

Query: 19 QICCLVDDGVRCPRPIGNASYSKRIQQIVTQKRLKLHLDN 58
          Q+CCL +DG RC R  GNAS+SKRIQ+ ++QK++K+ LD 
Sbjct: 5  QLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELDK 44


>3pj0_A LMO0305 protein; structural genomics, joint center for structural
           genomics, J protein structure initiative, PSI-biology,
           lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
          Length = 359

 Score = 23.8 bits (52), Expect = 4.2
 Identities = 5/20 (25%), Positives = 11/20 (55%)

Query: 38  SYSKRIQQIVTQKRLKLHLD 57
              ++I +   ++ + LHLD
Sbjct: 158 EELEKISEYCHEQGISLHLD 177


>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase;
           structural genomics, joint center for structural
           genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium
           sibiricum}
          Length = 357

 Score = 23.8 bits (52), Expect = 4.3
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 38  SYSKRIQQIVTQKRLKLHLD 57
           S  + I +   ++ ++LHLD
Sbjct: 156 SELETISRYCRERGIRLHLD 175


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0720    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 915,634
Number of extensions: 36884
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 3
Length of query: 62
Length of database: 6,701,793
Length adjustment: 33
Effective length of query: 29
Effective length of database: 5,780,400
Effective search space: 167631600
Effective search space used: 167631600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)