RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3276
         (62 letters)



>d3ejna1 a.118.8.6 (A:32-490) Uncharacterized protein BF3025
           {Bacteroides fragilis [TaxId: 817]}
          Length = 459

 Score = 25.8 bits (55), Expect = 0.31
 Identities = 5/27 (18%), Positives = 12/27 (44%)

Query: 35  GNASYSKRIQQIVTQKRLKLHLDNFRE 61
             +   ++I++I+ QK L        +
Sbjct: 369 QASGTEEQIERIIMQKYLVTFYQGNWD 395


>d1ufaa1 a.8.3.3 (A:413-517) Hypothetical protein TT1467, domain 2
          {Thermus thermophilus [TaxId: 274]}
          Length = 105

 Score = 22.8 bits (49), Expect = 3.2
 Identities = 4/13 (30%), Positives = 6/13 (46%)

Query: 50 KRLKLHLDNFREL 62
          +R + H   F  L
Sbjct: 64 ERYEEHARAFFHL 76


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0422    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 228,664
Number of extensions: 7411
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 2
Length of query: 62
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 30
Effective length of database: 1,968,236
Effective search space: 59047080
Effective search space used: 59047080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)