BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3281
(317 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24645|ANTP_DROSU Homeotic protein antennapedia OS=Drosophila subobscura GN=Antp PE=3
SV=1
Length = 394
Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 132/238 (55%), Positives = 144/238 (60%), Gaps = 48/238 (20%)
Query: 116 PVVYASCKLQAAVGNGIIPGPESPNDLVDPTLNNHH--------HHQHH----------- 156
PVVYASCKLQAAVG G+ PE + + + HH HH H
Sbjct: 169 PVVYASCKLQAAVGVGLGMVPEGGSPPLVDQMTGHHMNAQMSLPHHMGHPQAQLGYTDVG 228
Query: 157 -------HMNHHPHPHPQQQQ----PQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPP 205
H NHH QQQ P PPQ MM+ Q PPQ HQ + Q TPP+Q
Sbjct: 229 VPDVTEVHQNHHNMGMYGQQQTGVPPVGAPPQAMMHQGQGPPQMHQGHLPGQHTPPSQ-- 286
Query: 206 SQPPNQPPNQQPNNTSASLPSPLYPWMRSQF----ERKRGRQTYTRYQTLELEKEFHFNR 261
PN+ S+ +PSPLYPWMRSQF ERKRGRQTYTRYQTLELEKEFHFNR
Sbjct: 287 ----------NPNSQSSGMPSPLYPWMRSQFGKCQERKRGRQTYTRYQTLELEKEFHFNR 336
Query: 262 YLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKD--GGSDAGSDITPATSPQ 317
YLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK+K G G +ITP SPQ
Sbjct: 337 YLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKTKGEPGSGGEGDEITPPNSPQ 394
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 51/103 (49%), Gaps = 22/103 (21%)
Query: 1 MSSYFANSYMPDIKNGGVLPPEHHQQHHYGATVLPQNNGVEDPSMYDPRQVHHYGQVPNN 60
M+SYF NSYM + H H+ G NGV D D +Q+HHY Q PN+
Sbjct: 11 MTSYFTNSYMGA---------DMHHGHYPG-------NGVTD---LDAQQMHHYSQNPNH 51
Query: 61 GQPVHGMPYPRFPPYDRMDIRNAAYYGAHEGGMEQYPRPDSPS 103
MPYPRFPPYDRM N + + Y RPDSPS
Sbjct: 52 ---QGNMPYPRFPPYDRMPYYNGQGMDQQQQQHQGYSRPDSPS 91
>sp|P02833|ANTP_DROME Homeotic protein antennapedia OS=Drosophila melanogaster GN=Antp
PE=1 SV=1
Length = 378
Score = 208 bits (529), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 133/235 (56%), Positives = 145/235 (61%), Gaps = 51/235 (21%)
Query: 119 YASCKLQAAVGN-GIIPGPESPNDLVDPTLNNHH--------HHQHH------------- 156
YASCKLQAAVG G++P SP LVD ++ HH HH H
Sbjct: 159 YASCKLQAAVGGLGMVPEGGSP-PLVD-QMSGHHMNAQMTLPHHMGHPQAQLGYTDVGVP 216
Query: 157 -----HMNHHPHPHPQQQQ---PQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQP 208
H NHH QQQ P PPQ MM+ Q PPQ HQ P Q
Sbjct: 217 DVTEVHQNHHNMGMYQQQSGVPPVGAPPQGMMHQGQGPPQMHQ-------GHPGQ----- 264
Query: 209 PNQPPNQQPNNTSASLPSPLYPWMRSQF----ERKRGRQTYTRYQTLELEKEFHFNRYLT 264
+ PP+Q PN+ S+ +PSPLYPWMRSQF ERKRGRQTYTRYQTLELEKEFHFNRYLT
Sbjct: 265 -HTPPSQNPNSQSSGMPSPLYPWMRSQFGKCQERKRGRQTYTRYQTLELEKEFHFNRYLT 323
Query: 265 RRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKD--GGSDAGSDITPATSPQ 317
RRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK+K G G +ITP SPQ
Sbjct: 324 RRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKTKGEPGSGGEGDEITPPNSPQ 378
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 52/109 (47%), Gaps = 35/109 (32%)
Query: 1 MSSYFANSYMPDIKNGGVLPPEHHQQHHYGATVLPQNNGVEDPSMYDPRQVHHYGQVPNN 60
M+SYF NSYM + H H+ G NGV D D +Q+HHY Q N+
Sbjct: 11 MTSYFTNSYMG---------ADMHHGHYPG-------NGVTD---LDAQQMHHYSQNANH 51
Query: 61 GQPVHGMPYPRFPPYDRMDIRNAAYYGAHEGGMEQ------YPRPDSPS 103
MPYPRFPPYDRM N GM+Q Y RPDSPS
Sbjct: 52 ---QGNMPYPRFPPYDRMPYYNGQ-------GMDQQQQHQVYSRPDSPS 90
>sp|Q8AWY9|HXB7A_DANRE Homeobox protein Hox-B7a OS=Danio rerio GN=hoxb7a PE=2 SV=1
Length = 227
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/84 (83%), Positives = 74/84 (88%), Gaps = 1/84 (1%)
Query: 228 LYPWMRSQ-FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 286
+YPWMRS +RKRGRQTY+RYQTLELEKEFHFNRYL+RRRRIEIAHALCLTERQIKIWF
Sbjct: 134 IYPWMRSTGADRKRGRQTYSRYQTLELEKEFHFNRYLSRRRRIEIAHALCLTERQIKIWF 193
Query: 287 QNRRMKWKKENKSKDGGSDAGSDI 310
QNRRMKWKKENKS D S A I
Sbjct: 194 QNRRMKWKKENKSTDRCSPAADQI 217
>sp|A1YFA5|HXB7_GORGO Homeobox protein Hox-B7 OS=Gorilla gorilla gorilla GN=HOXB7 PE=3
SV=1
Length = 217
Score = 152 bits (383), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 71/102 (69%), Positives = 80/102 (78%), Gaps = 1/102 (0%)
Query: 206 SQPPNQPPNQQPNNTSASLPSPLYPWMRSQ-FERKRGRQTYTRYQTLELEKEFHFNRYLT 264
S Q+ ++ +A +YPWMRS +RKRGRQTYTRYQTLELEKEFH+NRYLT
Sbjct: 104 SAKAAGAKEQRDSDLAAESNFRIYPWMRSSGTDRKRGRQTYTRYQTLELEKEFHYNRYLT 163
Query: 265 RRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKDGGSDA 306
RRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK+ G+ A
Sbjct: 164 RRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKTAGPGTTA 205
>sp|P18864|HXB7_RAT Homeobox protein Hox-B7 OS=Rattus norvegicus GN=Hoxb7 PE=2 SV=2
Length = 219
Score = 151 bits (381), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 69/86 (80%), Positives = 76/86 (88%), Gaps = 1/86 (1%)
Query: 215 QQPNNTSASLPSPLYPWMRSQ-FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAH 273
Q+ ++ +A +YPWMRS ERKRGRQTYTRYQTLELEKEFH+NRYLTRRRRIEIAH
Sbjct: 113 QRDSDLAAESNFRIYPWMRSSGTERKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAH 172
Query: 274 ALCLTERQIKIWFQNRRMKWKKENKS 299
ALCLTERQIKIWFQNRRMKWKKENK+
Sbjct: 173 ALCLTERQIKIWFQNRRMKWKKENKT 198
>sp|Q9TT89|HXB7_BOVIN Homeobox protein Hox-B7 OS=Bos taurus GN=HOXB7 PE=2 SV=1
Length = 217
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/95 (72%), Positives = 77/95 (81%), Gaps = 1/95 (1%)
Query: 206 SQPPNQPPNQQPNNTSASLPSPLYPWMRSQ-FERKRGRQTYTRYQTLELEKEFHFNRYLT 264
S Q+ ++ +A +YPWMRS +RKRGRQTYTRYQTLELEKEFH+NRYLT
Sbjct: 104 SAKAAGAKEQRDSDLAAESNFRIYPWMRSSGTDRKRGRQTYTRYQTLELEKEFHYNRYLT 163
Query: 265 RRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKS 299
RRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK+
Sbjct: 164 RRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKT 198
>sp|P09629|HXB7_HUMAN Homeobox protein Hox-B7 OS=Homo sapiens GN=HOXB7 PE=1 SV=4
Length = 217
Score = 149 bits (375), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 68/95 (71%), Positives = 76/95 (80%), Gaps = 1/95 (1%)
Query: 206 SQPPNQPPNQQPNNTSASLPSPLYPWMRSQ-FERKRGRQTYTRYQTLELEKEFHFNRYLT 264
S Q+ ++ +A +YPWMRS +RKRGRQTYTRYQTLELEKEFH+NRYLT
Sbjct: 104 SAKAAGAKEQRDSDLAAESNFRIYPWMRSSGTDRKRGRQTYTRYQTLELEKEFHYNRYLT 163
Query: 265 RRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKS 299
RRRRIEIAH LCLTERQIKIWFQNRRMKWKKENK+
Sbjct: 164 RRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKT 198
>sp|Q91771|HXB7A_XENLA Homeobox protein Hox-B7-A OS=Xenopus laevis GN=hoxb7-a PE=2 SV=1
Length = 220
Score = 149 bits (375), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 67/80 (83%), Positives = 72/80 (90%), Gaps = 1/80 (1%)
Query: 228 LYPWMRSQ-FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 286
+YPWMRS +RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAH LCLTERQIKIWF
Sbjct: 129 IYPWMRSAGADRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHVLCLTERQIKIWF 188
Query: 287 QNRRMKWKKENKSKDGGSDA 306
QNRRMKWKKENK+ S++
Sbjct: 189 QNRRMKWKKENKASSPSSNS 208
>sp|P09071|HXA7_XENLA Homeobox protein Hox-A7 OS=Xenopus laevis GN=hoxa7 PE=2 SV=1
Length = 209
Score = 148 bits (374), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 78/90 (86%), Gaps = 2/90 (2%)
Query: 228 LYPWMRSQF-ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 286
+YPWMRS +RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF
Sbjct: 111 IYPWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 170
Query: 287 QNRRMKWKKENKSK-DGGSDAGSDITPATS 315
QNRRMKWKKE+K + D DAG + T T+
Sbjct: 171 QNRRMKWKKEHKEESDQTPDAGEESTAPTT 200
>sp|P04476|HXB7B_XENLA Homeobox protein Hox-B7-B OS=Xenopus laevis GN=hoxb7-b PE=2 SV=1
Length = 220
Score = 148 bits (373), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 67/80 (83%), Positives = 72/80 (90%), Gaps = 1/80 (1%)
Query: 228 LYPWMRSQ-FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 286
+YPWMRS +RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAH LCLTERQIKIWF
Sbjct: 127 IYPWMRSAGSDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHTLCLTERQIKIWF 186
Query: 287 QNRRMKWKKENKSKDGGSDA 306
QNRRMKWKKENK+ S++
Sbjct: 187 QNRRMKWKKENKASSPSSNS 206
>sp|Q90VZ9|HXA7_CHICK Homeobox protein Hox-A7 OS=Gallus gallus GN=HOXA7 PE=2 SV=1
Length = 219
Score = 147 bits (371), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 69/89 (77%), Positives = 77/89 (86%), Gaps = 1/89 (1%)
Query: 228 LYPWMRSQF-ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 286
+YPWMRS +RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF
Sbjct: 118 IYPWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 177
Query: 287 QNRRMKWKKENKSKDGGSDAGSDITPATS 315
QNRRMKWKKE+K + + A ++ T A +
Sbjct: 178 QNRRMKWKKEHKEESSSTPAPNEPTSAAA 206
>sp|P09024|HXB7_MOUSE Homeobox protein Hox-B7 OS=Mus musculus GN=Hoxb7 PE=2 SV=2
Length = 217
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/91 (74%), Positives = 77/91 (84%), Gaps = 1/91 (1%)
Query: 215 QQPNNTSASLPSPLYPWMRSQF-ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAH 273
Q+ ++ +A +YPWMRS +RKRGRQTYTRYQTLELEKEFH+NRYLTRRRRIEIAH
Sbjct: 113 QRDSDLAAESNFRIYPWMRSSGPDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAH 172
Query: 274 ALCLTERQIKIWFQNRRMKWKKENKSKDGGS 304
LCLTERQIKIWFQNRRMKWKKENK+ G+
Sbjct: 173 TLCLTERQIKIWFQNRRMKWKKENKTSGPGT 203
>sp|P02830|HXA7_MOUSE Homeobox protein Hox-A7 OS=Mus musculus GN=Hoxa7 PE=2 SV=2
Length = 229
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 75/90 (83%), Gaps = 2/90 (2%)
Query: 228 LYPWMRSQF-ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 286
+YPWMRS +RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF
Sbjct: 118 IYPWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 177
Query: 287 QNRRMKWKKENKSKDGGSDAG-SDITPATS 315
QNRRMKWKKE+K + A D P+ S
Sbjct: 178 QNRRMKWKKEHKDESQAPTAAPEDAVPSVS 207
>sp|Q9IA25|HXA7_HETFR Homeobox protein Hox-A7 OS=Heterodontus francisci GN=HOXA7 PE=3
SV=1
Length = 208
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/83 (81%), Positives = 73/83 (87%), Gaps = 3/83 (3%)
Query: 228 LYPWMRSQF-ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 286
+YPWMR+ +RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF
Sbjct: 124 IYPWMRNAGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 183
Query: 287 QNRRMKWKKENKSKDGGSDAGSD 309
QNRRMKWKKE K+ G S S+
Sbjct: 184 QNRRMKWKKETKA--GSSSTTSE 204
>sp|A2T7F3|HXA7_PANTR Homeobox protein Hox-A7 OS=Pan troglodytes GN=HOXA7 PE=3 SV=1
Length = 230
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/76 (89%), Positives = 71/76 (93%), Gaps = 2/76 (2%)
Query: 228 LYPWMRSQF-ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 286
+YPWMRS +RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF
Sbjct: 119 IYPWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 178
Query: 287 QNRRMKWKKENKSKDG 302
QNRRMKWKKE+K DG
Sbjct: 179 QNRRMKWKKEHKD-DG 193
>sp|P31268|HXA7_HUMAN Homeobox protein Hox-A7 OS=Homo sapiens GN=HOXA7 PE=2 SV=3
Length = 230
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/72 (91%), Positives = 69/72 (95%), Gaps = 1/72 (1%)
Query: 228 LYPWMRSQF-ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 286
+YPWMRS +RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF
Sbjct: 119 IYPWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 178
Query: 287 QNRRMKWKKENK 298
QNRRMKWKKE+K
Sbjct: 179 QNRRMKWKKEHK 190
>sp|P24061|HXA7_COTJA Homeobox protein Hox-A7 OS=Coturnix coturnix japonica GN=HOXA7 PE=2
SV=1
Length = 242
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/80 (82%), Positives = 71/80 (88%), Gaps = 1/80 (1%)
Query: 228 LYPWMRSQF-ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 286
+YPWMRS +RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIE AHALCLTERQIKIWF
Sbjct: 118 IYPWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEYAHALCLTERQIKIWF 177
Query: 287 QNRRMKWKKENKSKDGGSDA 306
QNRRMKWKKE+K + + A
Sbjct: 178 QNRRMKWKKEHKEESSSTPA 197
>sp|Q9PWD3|HXA5_MORSA Homeobox protein Hox-A5 OS=Morone saxatilis GN=hoxa5 PE=3 SV=1
Length = 281
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/113 (60%), Positives = 75/113 (66%), Gaps = 17/113 (15%)
Query: 197 QQTPPNQPPSQPPNQPPNQQPNNTSASLPSPLYPWMRSQF--------ERKRGRQTYTRY 248
++ P P+ P N + QP +YPWMR E KR R YTRY
Sbjct: 165 EEKPAGSAPTTPQNVSDSTQPQ---------IYPWMRKLHINHDLAGPEGKRARTAYTRY 215
Query: 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKD 301
QTLELEKEFHFNRYLTRRRRIEIAHALCL+ERQIKIWFQNRRMKWKK+NK K
Sbjct: 216 QTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKS 268
>sp|Q9PWD4|HXA7_MORSA Homeobox protein Hox-A7 OS=Morone saxatilis GN=hoxa7 PE=3 SV=1
Length = 225
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/94 (70%), Positives = 77/94 (81%), Gaps = 4/94 (4%)
Query: 228 LYPWMRSQF-ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 286
+YPWMR+ RKRGRQTY+RYQTLELEKEFHFNRYLTRRRRIEIAHALCL+ERQIKIWF
Sbjct: 115 MYPWMRASDPTRKRGRQTYSRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWF 174
Query: 287 QNRRMKWKKENKSKDGGSDAG---SDITPATSPQ 317
QNRRMKWKK++K + + +G DI P + +
Sbjct: 175 QNRRMKWKKDHKEEPVSTPSGEKDCDIQPVSEAE 208
>sp|Q9IA23|HXA5_HETFR Homeobox protein Hox-A5 OS=Heterodontus francisci GN=HOXA5 PE=3
SV=1
Length = 275
Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/111 (61%), Positives = 77/111 (69%), Gaps = 9/111 (8%)
Query: 199 TPPNQPPSQPPNQPPNQQPNNTSASLPSPLYPWMRSQF---------ERKRGRQTYTRYQ 249
+P + + + PP+ Q ++A +YPWMR E KR R YTRYQ
Sbjct: 152 SPGTEDDTPASSDPPSSQNGQSTAQQQPQIYPWMRKLHISHDSMGGPEGKRARTAYTRYQ 211
Query: 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSK 300
TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK+NK K
Sbjct: 212 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKDNKLK 262
>sp|P15861|HXB6A_DANRE Homeobox protein Hox-B6a OS=Danio rerio GN=hoxb6a PE=2 SV=1
Length = 228
Score = 139 bits (349), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 72/90 (80%), Gaps = 8/90 (8%)
Query: 226 SPLYPWMR------SQF--ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL 277
+P+YPWM+ F +RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL
Sbjct: 130 APVYPWMQRMNSCNGTFGNAGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL 189
Query: 278 TERQIKIWFQNRRMKWKKENKSKDGGSDAG 307
TERQIKIWFQNRRMKWKKENK + +G
Sbjct: 190 TERQIKIWFQNRRMKWKKENKLINCSQTSG 219
>sp|P09092|HXA6_MOUSE Homeobox protein Hox-A6 OS=Mus musculus GN=Hoxa6 PE=2 SV=2
Length = 232
Score = 138 bits (348), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/99 (67%), Positives = 73/99 (73%), Gaps = 9/99 (9%)
Query: 220 TSASLPSPLYPWMRSQFER---------KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIE 270
T SP+YPWM+ +RGRQTYTRYQTLELEKEFHFNRYLTRRRRIE
Sbjct: 127 TDRKYTSPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIE 186
Query: 271 IAHALCLTERQIKIWFQNRRMKWKKENKSKDGGSDAGSD 309
IA+ALCLTERQIKIWFQNRRMKWKKENK + +G D
Sbjct: 187 IANALCLTERQIKIWFQNRRMKWKKENKLINSTQASGED 225
>sp|Q1KKY0|HXB6A_TAKRU Homeobox protein Hox-B6a OS=Takifugu rubripes GN=hoxb6a PE=3 SV=1
Length = 274
Score = 138 bits (348), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 65/80 (81%), Positives = 68/80 (85%), Gaps = 8/80 (10%)
Query: 227 PLYPWMR------SQFER--KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 278
P+YPWM+ F +RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT
Sbjct: 170 PIYPWMQRMNACNGTFGSPGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 229
Query: 279 ERQIKIWFQNRRMKWKKENK 298
ERQIKIWFQNRRMKWKKENK
Sbjct: 230 ERQIKIWFQNRRMKWKKENK 249
>sp|Q9YGT4|HXB6B_DANRE Homeobox protein Hox-B6b OS=Danio rerio GN=hoxb6b PE=2 SV=2
Length = 224
Score = 138 bits (347), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 62/82 (75%), Positives = 69/82 (84%), Gaps = 8/82 (9%)
Query: 226 SPLYPWMRSQ--------FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL 277
+P+YPWM+ +RGRQTYTR+QTLELEKEFHFNRYLTRRRRIEI+HALCL
Sbjct: 127 TPVYPWMQRMNSCNGMPGSTGRRGRQTYTRFQTLELEKEFHFNRYLTRRRRIEISHALCL 186
Query: 278 TERQIKIWFQNRRMKWKKENKS 299
TERQIKIWFQNRRMKWKKENK+
Sbjct: 187 TERQIKIWFQNRRMKWKKENKA 208
>sp|Q5YLH5|HXA6_CHICK Homeobox protein Hox-A6 OS=Gallus gallus GN=HOXA6 PE=2 SV=1
Length = 231
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/88 (73%), Positives = 69/88 (78%), Gaps = 9/88 (10%)
Query: 220 TSASLPSPLYPWMRSQFER---------KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIE 270
T SP+YPWM+ +RGRQTYTRYQTLELEKEFHFNRYLTRRRRIE
Sbjct: 126 TDRKYTSPVYPWMQRMNSCAGTVYGAHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIE 185
Query: 271 IAHALCLTERQIKIWFQNRRMKWKKENK 298
IA+ALCLTERQIKIWFQNRRMKWKKENK
Sbjct: 186 IANALCLTERQIKIWFQNRRMKWKKENK 213
>sp|P31267|HXA6_HUMAN Homeobox protein Hox-A6 OS=Homo sapiens GN=HOXA6 PE=2 SV=2
Length = 233
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/93 (70%), Positives = 72/93 (77%), Gaps = 9/93 (9%)
Query: 226 SPLYPWMRSQFER---------KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC 276
SP+YPWM+ +RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIA+ALC
Sbjct: 134 SPVYPWMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALC 193
Query: 277 LTERQIKIWFQNRRMKWKKENKSKDGGSDAGSD 309
LTERQIKIWFQNRRMKWKKENK + +G D
Sbjct: 194 LTERQIKIWFQNRRMKWKKENKLINSTQPSGED 226
>sp|Q1KL14|HXA5A_TAKRU Homeobox protein Hox-A5a OS=Takifugu rubripes GN=hoxa5a PE=3 SV=1
Length = 274
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 84/141 (59%), Gaps = 9/141 (6%)
Query: 168 QQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSASLPSP 227
+ QPQ ++ + ++VN + P + P N + S
Sbjct: 121 ETQPQHRVVKNSVTTPCSSSSGGTLLVN-RDCASKSSPLEEEKPAGGATPQNVNDSTQPQ 179
Query: 228 LYPWMR--------SQFERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTE 279
+YPWMR S E KR R YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL+E
Sbjct: 180 IYPWMRKIHISHELSGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSE 239
Query: 280 RQIKIWFQNRRMKWKKENKSK 300
RQIKIWFQNRRMKWKK+NK K
Sbjct: 240 RQIKIWFQNRRMKWKKDNKLK 260
>sp|Q6B3N0|HXA5_CHICK Homeobox protein Hox-A5 OS=Gallus gallus GN=HOXA5 PE=2 SV=1
Length = 270
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/113 (60%), Positives = 75/113 (66%), Gaps = 11/113 (9%)
Query: 199 TPPNQPPSQPPNQPPNQQPNNTSASLPSP--LYPWMRSQF---------ERKRGRQTYTR 247
T P + P++ S + PS +YPWMR E KR R YTR
Sbjct: 145 TSSGTEEDTPASSEQASAPSDQSTAQPSQPQIYPWMRKLHISHDNIGGPEGKRARTAYTR 204
Query: 248 YQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSK 300
YQTLELEKEFHFNRYLTRRRRIEIAHALCL+ERQIKIWFQNRRMKWKK+NK K
Sbjct: 205 YQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLK 257
>sp|Q9IA24|HXA6_HETFR Homeobox protein Hox-A6 OS=Heterodontus francisci GN=HOXA6 PE=3
SV=1
Length = 229
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/119 (59%), Positives = 85/119 (71%), Gaps = 14/119 (11%)
Query: 205 PSQPPNQPPNQQPNNTSASLPSPLYPWMR-------SQF--ERKRGRQTYTRYQTLELEK 255
P N+ +++ N+ S +P+YPWM+ S F +RGRQTYTR+QTLELEK
Sbjct: 111 PDCAQNKILSEEGNDRKYS--TPIYPWMQRMNSSSSSVFGPHGRRGRQTYTRFQTLELEK 168
Query: 256 EFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK---SKDGGSDAGSDIT 311
EFHFNRYLTRRRRIEIA+ALCLTERQIKIWFQNRRMKWKKENK + + S+ D T
Sbjct: 169 EFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKLLNTTESNSEEAEDKT 227
>sp|A2D5Y4|HXA5_LEMCA Homeobox protein Hox-A5 OS=Lemur catta GN=HOXA5 PE=3 SV=1
Length = 270
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/83 (74%), Positives = 65/83 (78%), Gaps = 9/83 (10%)
Query: 228 LYPWMRSQF---------ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 278
+YPWMR E KR R YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL+
Sbjct: 176 IYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS 235
Query: 279 ERQIKIWFQNRRMKWKKENKSKD 301
ERQIKIWFQNRRMKWKK+NK K
Sbjct: 236 ERQIKIWFQNRRMKWKKDNKLKS 258
>sp|A1YGK7|HXA7_PANPA Homeobox protein Hox-A7 OS=Pan paniscus GN=HOXA7 PE=3 SV=1
Length = 230
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/72 (86%), Positives = 65/72 (90%), Gaps = 1/72 (1%)
Query: 228 LYPWMRSQF-ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 286
+YPWMRS +RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIE HALCLTERQI WF
Sbjct: 119 IYPWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEXXHALCLTERQIXXWF 178
Query: 287 QNRRMKWKKENK 298
QNRRMKWKKE+K
Sbjct: 179 QNRRMKWKKEHK 190
>sp|P20719|HXA5_HUMAN Homeobox protein Hox-A5 OS=Homo sapiens GN=HOXA5 PE=1 SV=2
Length = 270
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/82 (75%), Positives = 65/82 (79%), Gaps = 9/82 (10%)
Query: 228 LYPWMRSQF---------ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 278
+YPWMR E KR R YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL+
Sbjct: 176 IYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS 235
Query: 279 ERQIKIWFQNRRMKWKKENKSK 300
ERQIKIWFQNRRMKWKK+NK K
Sbjct: 236 ERQIKIWFQNRRMKWKKDNKLK 257
>sp|Q9IA11|HXD5_HETFR Homeobox protein Hox-D5 OS=Heterodontus francisci GN=HOXD5 PE=3
SV=1
Length = 252
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 94/192 (48%), Gaps = 10/192 (5%)
Query: 119 YASCKLQAAVGNGIIPGPESPNDLVDPTLNNHHHHQHHHMNHHPHPHPQQQQPQQPPPQH 178
Y L N + G + T +N H+ P+P P
Sbjct: 48 YTGIDLSMTRSNSNLCGDSERSTNYLQTASNTFHNSSGVKIKSPNPAFCSGSLISPSDSA 107
Query: 179 MMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQP-PNQQPNNTSASLPSPLYPWMR---- 233
+ H N +P N + N P P + +L +YPWM+
Sbjct: 108 IKMGANITEPSHSYSGNQDTSPVNDKHPKGTNSPKPENGQLDKDPALQMQIYPWMKKMHL 167
Query: 234 -----SQFERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 288
S E KR R YTRYQTLELEKEFH+NRYLTRRRRIEIAHALCLTERQIKIWFQN
Sbjct: 168 NQEGLSGLEGKRTRTAYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQN 227
Query: 289 RRMKWKKENKSK 300
RRMKWKK+NK K
Sbjct: 228 RRMKWKKDNKLK 239
>sp|P09021|HXA5_MOUSE Homeobox protein Hox-A5 OS=Mus musculus GN=Hoxa5 PE=1 SV=1
Length = 270
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/82 (75%), Positives = 65/82 (79%), Gaps = 9/82 (10%)
Query: 228 LYPWMRSQF---------ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 278
+YPWMR E KR R YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL+
Sbjct: 176 IYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS 235
Query: 279 ERQIKIWFQNRRMKWKKENKSK 300
ERQIKIWFQNRRMKWKK+NK K
Sbjct: 236 ERQIKIWFQNRRMKWKKDNKLK 257
>sp|Q1KKX9|HXB5A_TAKRU Homeobox protein Hox-B5a OS=Takifugu rubripes GN=hoxb5a PE=3 SV=1
Length = 319
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 65/81 (80%), Gaps = 8/81 (9%)
Query: 228 LYPWMRSQF--------ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTE 279
++PWMR + KR R YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTE
Sbjct: 226 IFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTE 285
Query: 280 RQIKIWFQNRRMKWKKENKSK 300
RQIKIWFQNRRMKWKK+NK K
Sbjct: 286 RQIKIWFQNRRMKWKKDNKLK 306
>sp|P17509|HXB6_HUMAN Homeobox protein Hox-B6 OS=Homo sapiens GN=HOXB6 PE=1 SV=4
Length = 224
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/82 (78%), Positives = 70/82 (85%), Gaps = 9/82 (10%)
Query: 226 SPLYPWMR-------SQF--ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC 276
+P+YPWM+ S F +RGRQTYTRYQTLELEKEFH+NRYLTRRRRIEIAHALC
Sbjct: 125 TPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALC 184
Query: 277 LTERQIKIWFQNRRMKWKKENK 298
LTERQIKIWFQNRRMKWKKE+K
Sbjct: 185 LTERQIKIWFQNRRMKWKKESK 206
>sp|P09023|HXB6_MOUSE Homeobox protein Hox-B6 OS=Mus musculus GN=Hoxb6 PE=2 SV=2
Length = 224
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/82 (78%), Positives = 70/82 (85%), Gaps = 9/82 (10%)
Query: 226 SPLYPWMR-------SQF--ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC 276
+P+YPWM+ S F +RGRQTYTRYQTLELEKEFH+NRYLTRRRRIEIAHALC
Sbjct: 125 TPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALC 184
Query: 277 LTERQIKIWFQNRRMKWKKENK 298
LTERQIKIWFQNRRMKWKKE+K
Sbjct: 185 LTERQIKIWFQNRRMKWKKESK 206
>sp|A2D5K9|HXA5_LAGLA Homeobox protein Hox-A5 OS=Lagothrix lagotricha GN=HOXA5 PE=3 SV=1
Length = 270
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/82 (75%), Positives = 65/82 (79%), Gaps = 9/82 (10%)
Query: 228 LYPWMRSQF---------ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 278
+YPWMR E KR R YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL+
Sbjct: 176 IYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS 235
Query: 279 ERQIKIWFQNRRMKWKKENKSK 300
ERQIKIWFQNRRMKWKK+NK K
Sbjct: 236 ERQIKIWFQNRRMKWKKDNKLK 257
>sp|Q2HJ67|HXA5_BOVIN Homeobox protein Hox-A5 OS=Bos taurus GN=HOXA5 PE=2 SV=1
Length = 270
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/82 (75%), Positives = 65/82 (79%), Gaps = 9/82 (10%)
Query: 228 LYPWMRSQF---------ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 278
+YPWMR E KR R YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL+
Sbjct: 176 IYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS 235
Query: 279 ERQIKIWFQNRRMKWKKENKSK 300
ERQIKIWFQNRRMKWKK+NK K
Sbjct: 236 ERQIKIWFQNRRMKWKKDNKLK 257
>sp|P02832|HXC6_XENLA Homeobox protein Hox-C6 OS=Xenopus laevis GN=hoxc6 PE=2 SV=2
Length = 234
Score = 135 bits (339), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 63/94 (67%), Positives = 72/94 (76%), Gaps = 12/94 (12%)
Query: 228 LYPWMRSQ---------FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 278
+YPWM+ +R+RGRQ Y+RYQTLELEKEFHFNRYLTRRRRIEIA+ALCLT
Sbjct: 122 IYPWMQRMNSHSGVGYGTDRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLT 181
Query: 279 ERQIKIWFQNRRMKWKKENKSKD---GGSDAGSD 309
ERQIKIWFQNRRMKWKKE+ GG+ A +D
Sbjct: 182 ERQIKIWFQNRRMKWKKESNLSSTLPGGTGAAAD 215
>sp|P14858|HXC6_NOTVI Homeobox protein Hox-C6 OS=Notophthalmus viridescens GN=HOXC6 PE=2
SV=1
Length = 234
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 63/94 (67%), Positives = 72/94 (76%), Gaps = 12/94 (12%)
Query: 228 LYPWMRSQ---------FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 278
+YPWM+ +R+RGRQ Y+RYQTLELEKEFHFNRYLTRRRRIEIA+A CLT
Sbjct: 122 IYPWMQRMNSHSGVGYGTDRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANASCLT 181
Query: 279 ERQIKIWFQNRRMKWKKEN---KSKDGGSDAGSD 309
ERQIKIWFQNRRMKWKKE+ + GG+ A SD
Sbjct: 182 ERQIKIWFQNRRMKWKKESNLTSTLSGGTGAASD 215
>sp|Q1KKX1|HXB6B_TAKRU Homeobox protein Hox-B6b OS=Takifugu rubripes GN=hoxb6b PE=3 SV=1
Length = 233
Score = 134 bits (338), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 63/80 (78%), Positives = 67/80 (83%), Gaps = 9/80 (11%)
Query: 228 LYPWMRSQ-------F--ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 278
+YPWM+ F +RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEI+HALCLT
Sbjct: 136 IYPWMQRMNACSAGPFGNSGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEISHALCLT 195
Query: 279 ERQIKIWFQNRRMKWKKENK 298
ERQIKIWFQNRRMKWKKENK
Sbjct: 196 ERQIKIWFQNRRMKWKKENK 215
>sp|P09067|HXB5_HUMAN Homeobox protein Hox-B5 OS=Homo sapiens GN=HOXB5 PE=2 SV=3
Length = 269
Score = 134 bits (337), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 64/94 (68%), Positives = 70/94 (74%), Gaps = 9/94 (9%)
Query: 228 LYPWMRSQF--------ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTE 279
++PWMR + KR R YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL+E
Sbjct: 176 IFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSE 235
Query: 280 RQIKIWFQNRRMKWKKENKSKDGG-SDAGSDITP 312
RQIKIWFQNRRMKWKK+NK K + AGS P
Sbjct: 236 RQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP 269
>sp|P09079|HXB5_MOUSE Homeobox protein Hox-B5 OS=Mus musculus GN=Hoxb5 PE=2 SV=3
Length = 269
Score = 134 bits (337), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 64/94 (68%), Positives = 70/94 (74%), Gaps = 9/94 (9%)
Query: 228 LYPWMRSQF--------ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTE 279
++PWMR + KR R YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL+E
Sbjct: 176 IFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSE 235
Query: 280 RQIKIWFQNRRMKWKKENKSKDGG-SDAGSDITP 312
RQIKIWFQNRRMKWKK+NK K + AGS P
Sbjct: 236 RQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP 269
>sp|P09014|HXB5A_DANRE Homeobox protein Hox-B5a OS=Danio rerio GN=hoxb5a PE=2 SV=2
Length = 275
Score = 134 bits (337), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 64/94 (68%), Positives = 70/94 (74%), Gaps = 9/94 (9%)
Query: 228 LYPWMRSQF--------ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTE 279
++PWMR + KR R YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL+E
Sbjct: 182 IFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSE 241
Query: 280 RQIKIWFQNRRMKWKKENKSKDGG-SDAGSDITP 312
RQIKIWFQNRRMKWKK+NK K + AGS P
Sbjct: 242 RQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP 275
>sp|Q1KKX0|HXB5B_TAKRU Homeobox protein Hox-B5b OS=Takifugu rubripes GN=hoxb5b PE=3 SV=1
Length = 280
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/100 (64%), Positives = 72/100 (72%), Gaps = 15/100 (15%)
Query: 216 QPNNTSASLPSP-------LYPWMRSQF--------ERKRGRQTYTRYQTLELEKEFHFN 260
Q N ++S P+ ++PWMR + KR R YTRYQTLELEKEFHFN
Sbjct: 168 QDQNATSSTPTSNDCQTPQIFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFN 227
Query: 261 RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSK 300
RYLTRRRRIEIAHALCL+ERQIKIWFQNRRMKWKK+NK K
Sbjct: 228 RYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLK 267
>sp|P09077|SCR_DROME Homeotic protein Sex combs reduced OS=Drosophila melanogaster
GN=Scr PE=1 SV=5
Length = 417
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/103 (63%), Positives = 73/103 (70%), Gaps = 10/103 (9%)
Query: 206 SQPPNQPPNQQPNNTSASLPSPLYPWMR----------SQFERKRGRQTYTRYQTLELEK 255
S N+ + Q + P +YPWM+ + E KR R +YTRYQTLELEK
Sbjct: 282 SDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANGETKRQRTSYTRYQTLELEK 341
Query: 256 EFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 298
EFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE+K
Sbjct: 342 EFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 384
>sp|P09013|HXB5B_DANRE Homeobox protein Hox-B5b OS=Danio rerio GN=hoxb5b PE=2 SV=2
Length = 276
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/81 (74%), Positives = 65/81 (80%), Gaps = 8/81 (9%)
Query: 228 LYPWMRSQF--------ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTE 279
++PWMR + KR R YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL+E
Sbjct: 183 IFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSE 242
Query: 280 RQIKIWFQNRRMKWKKENKSK 300
RQIKIWFQNRRMKWKK+NK K
Sbjct: 243 RQIKIWFQNRRMKWKKDNKLK 263
>sp|O42504|HXC6A_TAKRU Homeobox protein Hox-C6a OS=Takifugu rubripes GN=hoxc6a PE=3 SV=1
Length = 236
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/80 (75%), Positives = 67/80 (83%), Gaps = 9/80 (11%)
Query: 227 PLYPWMRSQ---------FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL 277
P+YPWM+ +R+RGRQ Y+RYQTLELEKEFHFNRYLTRRRRIEIA+ALCL
Sbjct: 120 PIYPWMQRMNSHSGVGYGTDRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCL 179
Query: 278 TERQIKIWFQNRRMKWKKEN 297
TERQIKIWFQNRRMKWKKE+
Sbjct: 180 TERQIKIWFQNRRMKWKKES 199
>sp|P09019|HXB5_XENLA Homeobox protein Hox-B5 (Fragment) OS=Xenopus laevis GN=hoxb5 PE=2
SV=1
Length = 230
Score = 131 bits (330), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 66/89 (74%), Gaps = 8/89 (8%)
Query: 228 LYPWMRSQF--------ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTE 279
++PWMR + KR R YTRYQTLELEKEFHFNRYLTRRRRIEIAH LCL+E
Sbjct: 137 IFPWMRKLHINHDMAGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHTLCLSE 196
Query: 280 RQIKIWFQNRRMKWKKENKSKDGGSDAGS 308
RQIKIWFQNRRMKWKK+NK K GS
Sbjct: 197 RQIKIWFQNRRMKWKKDNKLKSMSLATGS 225
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,190,368
Number of Sequences: 539616
Number of extensions: 7769711
Number of successful extensions: 84364
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2137
Number of HSP's successfully gapped in prelim test: 1240
Number of HSP's that attempted gapping in prelim test: 42423
Number of HSP's gapped (non-prelim): 20891
length of query: 317
length of database: 191,569,459
effective HSP length: 117
effective length of query: 200
effective length of database: 128,434,387
effective search space: 25686877400
effective search space used: 25686877400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)