Query psy3281
Match_columns 317
No_of_seqs 248 out of 1183
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 21:02:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dms_A Homeobox protein OTX2; 99.8 8.4E-20 2.9E-24 141.2 7.5 71 236-306 5-75 (80)
2 2dmq_A LIM/homeobox protein LH 99.8 1.1E-19 3.7E-24 140.2 7.2 69 236-304 5-73 (80)
3 2r5y_A Homeotic protein sex co 99.8 1.1E-19 3.7E-24 143.1 6.4 63 236-298 26-88 (88)
4 2kt0_A Nanog, homeobox protein 99.8 1.3E-19 4.5E-24 141.0 6.9 64 236-299 20-83 (84)
5 2dmt_A Homeobox protein BARH-l 99.8 1.8E-19 6.3E-24 139.4 6.2 65 235-299 14-78 (80)
6 1b8i_A Ultrabithorax, protein 99.8 1.1E-19 3.8E-24 141.2 4.9 71 228-298 7-80 (81)
7 1ahd_P Antennapedia protein mu 99.8 2.2E-19 7.4E-24 135.1 5.3 65 238-302 2-66 (68)
8 2cra_A Homeobox protein HOX-B1 99.8 2.3E-19 8E-24 135.4 5.3 63 236-298 5-67 (70)
9 2da3_A Alpha-fetoprotein enhan 99.8 2.2E-19 7.4E-24 138.2 5.1 64 236-299 15-78 (80)
10 2dmu_A Homeobox protein goosec 99.8 3E-19 1E-23 134.7 5.7 63 237-299 6-68 (70)
11 2cue_A Paired box protein PAX6 99.8 1.7E-19 6E-24 139.5 4.2 66 236-301 5-70 (80)
12 2da1_A Alpha-fetoprotein enhan 99.8 2.5E-19 8.5E-24 135.0 4.7 64 236-299 5-68 (70)
13 2da2_A Alpha-fetoprotein enhan 99.8 3.1E-19 1E-23 134.5 5.2 64 236-299 5-68 (70)
14 2l7z_A Homeobox protein HOX-A1 99.8 5E-19 1.7E-23 134.9 6.0 66 236-301 5-70 (73)
15 1nk2_P Homeobox protein VND; h 99.8 6.6E-19 2.3E-23 135.3 6.3 67 236-302 7-73 (77)
16 2djn_A Homeobox protein DLX-5; 99.8 4.2E-19 1.4E-23 134.0 4.8 63 236-298 5-67 (70)
17 1zq3_P PRD-4, homeotic bicoid 99.8 6.8E-19 2.3E-23 132.3 5.9 65 238-302 2-66 (68)
18 2e1o_A Homeobox protein PRH; D 99.8 7.1E-19 2.4E-23 132.7 5.9 63 237-299 6-68 (70)
19 1b72_A Protein (homeobox prote 99.8 6.4E-19 2.2E-23 141.1 6.0 63 237-299 33-95 (97)
20 1ftt_A TTF-1 HD, thyroid trans 99.8 7.2E-19 2.5E-23 132.1 5.7 64 238-301 2-65 (68)
21 2h1k_A IPF-1, pancreatic and d 99.7 6.2E-19 2.1E-23 130.5 5.0 61 237-297 2-62 (63)
22 2m0c_A Homeobox protein arista 99.7 6.2E-19 2.1E-23 133.9 5.1 65 235-299 6-70 (75)
23 2vi6_A Homeobox protein nanog; 99.7 5.5E-19 1.9E-23 130.2 4.4 60 237-296 2-61 (62)
24 2ecb_A Zinc fingers and homeob 99.7 1.8E-18 6.2E-23 137.6 7.7 58 244-301 17-74 (89)
25 2hdd_A Protein (engrailed home 99.7 6.2E-19 2.1E-23 129.6 4.6 60 237-296 2-61 (61)
26 1puf_A HOX-1.7, homeobox prote 99.7 8.3E-19 2.8E-23 134.8 5.1 65 236-300 11-75 (77)
27 3a01_A Homeodomain-containing 99.7 9.2E-19 3.2E-23 139.5 5.5 69 236-304 15-83 (93)
28 2hi3_A Homeodomain-only protei 99.7 1.8E-18 6E-23 131.7 6.4 66 239-304 3-69 (73)
29 1ig7_A Homeotic protein MSX-1; 99.7 1.3E-18 4.3E-23 126.4 5.3 58 239-296 1-58 (58)
30 1uhs_A HOP, homeodomain only p 99.7 1.8E-18 6.3E-23 131.1 6.3 66 239-304 2-68 (72)
31 1wh5_A ZF-HD homeobox family p 99.7 1.3E-18 4.3E-23 135.4 5.5 60 236-295 15-78 (80)
32 1bw5_A ISL-1HD, insulin gene e 99.7 9.1E-19 3.1E-23 130.6 4.4 62 237-298 2-63 (66)
33 2da4_A Hypothetical protein DK 99.7 9.9E-19 3.4E-23 135.1 4.5 63 236-298 6-72 (80)
34 1fjl_A Paired protein; DNA-bin 99.7 1.4E-18 4.7E-23 134.7 5.3 64 235-298 15-78 (81)
35 2cuf_A FLJ21616 protein; homeo 99.7 2E-18 6.9E-23 137.7 6.3 69 236-304 5-88 (95)
36 1yz8_P Pituitary homeobox 2; D 99.7 8.2E-19 2.8E-23 131.7 3.7 64 237-300 2-65 (68)
37 2da5_A Zinc fingers and homeob 99.7 2.9E-18 9.9E-23 131.4 6.3 64 239-302 8-71 (75)
38 1jgg_A Segmentation protein EV 99.7 2E-18 6.8E-23 126.4 4.8 58 239-296 2-59 (60)
39 2k40_A Homeobox expressed in E 99.7 2.2E-18 7.5E-23 128.9 5.1 61 239-299 2-62 (67)
40 2ecc_A Homeobox and leucine zi 99.7 4.4E-18 1.5E-22 131.8 6.8 64 240-303 5-68 (76)
41 1wh7_A ZF-HD homeobox family p 99.7 2.7E-18 9.1E-23 133.8 5.3 60 235-295 14-78 (80)
42 2dn0_A Zinc fingers and homeob 99.7 2.8E-18 9.5E-23 131.5 5.2 63 239-301 9-71 (76)
43 3rkq_A Homeobox protein NKX-2. 99.7 2.7E-18 9.1E-23 124.1 4.8 57 238-294 2-58 (58)
44 2ly9_A Zinc fingers and homeob 99.7 5.4E-18 1.9E-22 128.9 6.1 65 237-301 5-69 (74)
45 3a02_A Homeobox protein arista 99.7 2.6E-18 8.9E-23 125.8 4.1 58 241-298 2-59 (60)
46 1akh_A Protein (mating-type pr 99.7 2.8E-18 9.6E-23 125.8 3.9 59 236-294 3-61 (61)
47 3nar_A ZHX1, zinc fingers and 99.7 5.1E-18 1.7E-22 135.7 4.7 63 236-298 23-85 (96)
48 2dmp_A Zinc fingers and homeob 99.7 2.4E-17 8.1E-22 130.4 8.2 61 242-302 17-77 (89)
49 2dmn_A Homeobox protein TGIF2L 99.7 1.6E-17 5.3E-22 129.8 7.0 67 236-302 5-74 (83)
50 1x2n_A Homeobox protein pknox1 99.7 1.1E-17 3.6E-22 127.1 5.7 64 236-299 5-71 (73)
51 1b72_B Protein (PBX1); homeodo 99.7 2.3E-18 7.8E-23 134.8 2.0 63 239-301 2-67 (87)
52 3a03_A T-cell leukemia homeobo 99.7 9.8E-18 3.3E-22 121.4 4.5 54 243-296 2-55 (56)
53 1puf_B PRE-B-cell leukemia tra 99.7 1.3E-17 4.5E-22 126.6 5.4 63 239-301 2-67 (73)
54 2xsd_C POU domain, class 3, tr 99.7 9.8E-18 3.4E-22 146.5 4.2 68 234-301 95-162 (164)
55 2da6_A Hepatocyte nuclear fact 99.7 2.2E-17 7.4E-22 134.5 5.6 71 235-305 3-94 (102)
56 1du6_A PBX1, homeobox protein 99.7 1E-17 3.6E-22 123.9 3.4 59 237-295 2-63 (64)
57 1e3o_C Octamer-binding transcr 99.7 2E-17 6.9E-22 143.6 4.4 62 235-296 98-159 (160)
58 1mnm_C Protein (MAT alpha-2 tr 99.7 1.9E-17 6.6E-22 129.9 3.8 61 235-295 24-87 (87)
59 1k61_A Mating-type protein alp 99.7 5E-17 1.7E-21 118.8 4.7 56 241-296 1-59 (60)
60 1lfb_A Liver transcription fac 99.7 3.5E-17 1.2E-21 132.4 3.7 69 233-301 4-93 (99)
61 2cqx_A LAG1 longevity assuranc 99.6 2.3E-17 7.9E-22 125.9 2.1 59 239-297 9-68 (72)
62 1au7_A Protein PIT-1, GHF-1; c 99.6 7.1E-17 2.4E-21 138.4 4.9 62 235-296 84-145 (146)
63 1le8_B Mating-type protein alp 99.6 5.7E-17 1.9E-21 126.4 3.7 61 239-299 3-66 (83)
64 2l9r_A Homeobox protein NKX-3. 99.6 9E-17 3.1E-21 122.1 4.5 59 243-301 9-67 (69)
65 1wi3_A DNA-binding protein SAT 99.6 1.3E-16 4.4E-21 121.1 4.6 60 236-295 5-65 (71)
66 3d1n_I POU domain, class 6, tr 99.6 1.8E-16 6.1E-21 136.2 4.9 60 236-295 91-150 (151)
67 3nau_A Zinc fingers and homeob 99.6 2.5E-16 8.6E-21 118.8 4.1 51 246-296 12-62 (66)
68 2e19_A Transcription factor 8; 99.6 2.8E-16 9.4E-21 117.4 4.0 55 242-296 7-61 (64)
69 3l1p_A POU domain, class 5, tr 99.6 4.8E-16 1.7E-20 134.4 4.1 60 237-296 95-154 (155)
70 2d5v_A Hepatocyte nuclear fact 99.6 5E-16 1.7E-20 134.8 4.0 66 236-301 95-160 (164)
71 1x2m_A LAG1 longevity assuranc 99.6 3.4E-16 1.2E-20 117.5 2.2 50 247-296 9-59 (64)
72 3k2a_A Homeobox protein MEIS2; 99.5 2.3E-15 7.8E-20 113.2 4.0 59 243-301 3-64 (67)
73 2lk2_A Homeobox protein TGIF1; 99.5 4E-14 1.4E-18 112.6 5.3 74 243-316 10-86 (89)
74 1ic8_A Hepatocyte nuclear fact 99.4 2.1E-14 7.2E-19 128.8 2.2 61 235-295 112-193 (194)
75 2da7_A Zinc finger homeobox pr 99.4 4.1E-13 1.4E-17 102.3 4.3 48 247-294 14-61 (71)
76 2h8r_A Hepatocyte nuclear fact 99.3 6.2E-13 2.1E-17 121.4 3.9 60 235-294 139-219 (221)
77 1mh3_A Maltose binding-A1 home 99.3 8.6E-13 2.9E-17 125.7 1.7 56 239-294 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.5 2.4E-08 8.4E-13 67.1 0.5 23 280-302 1-23 (37)
79 2ys9_A Homeobox and leucine zi 95.4 0.0077 2.6E-07 45.6 2.6 39 250-288 18-56 (70)
80 3oka_C N-terminal His-affinity 90.5 0.083 2.8E-06 30.3 1.0 6 148-153 2-7 (21)
81 2l4h_A Calcium and integrin-bi 90.5 0.067 2.3E-06 46.4 0.8 31 240-270 40-83 (214)
82 2elh_A CG11849-PA, LD40883P; s 89.4 0.52 1.8E-05 35.7 5.0 45 239-288 17-61 (87)
83 2glo_A Brinker CG9653-PA; prot 88.6 0.35 1.2E-05 33.9 3.3 46 242-288 3-48 (59)
84 1hlv_A CENP-B, major centromer 86.6 0.68 2.3E-05 36.8 4.3 50 240-292 3-52 (131)
85 1jko_C HIN recombinase, DNA-in 86.2 0.37 1.3E-05 31.5 2.2 43 244-291 5-47 (52)
86 3hug_A RNA polymerase sigma fa 84.5 0.42 1.4E-05 36.2 2.0 51 244-299 37-87 (92)
87 1tc3_C Protein (TC3 transposas 83.7 1.1 3.7E-05 28.6 3.5 40 244-288 5-44 (51)
88 2o8x_A Probable RNA polymerase 82.0 0.66 2.3E-05 32.6 2.1 49 244-297 15-63 (70)
89 2p7v_B Sigma-70, RNA polymeras 80.9 0.89 3E-05 32.4 2.5 53 244-297 5-57 (68)
90 3c57_A Two component transcrip 80.9 0.93 3.2E-05 34.8 2.7 51 243-299 26-76 (95)
91 3tla_A MCCF; serine protease, 80.6 0.33 1.1E-05 47.0 0.0 10 249-258 97-106 (371)
92 1je8_A Nitrate/nitrite respons 80.3 1 3.5E-05 33.6 2.7 49 242-296 19-67 (82)
93 3bni_A Putative TETR-family tr 77.1 0.61 2.1E-05 39.8 0.6 40 250-290 49-88 (229)
94 1fse_A GERE; helix-turn-helix 77.0 1.5 5.2E-05 31.0 2.7 48 242-295 9-56 (74)
95 1p4w_A RCSB; solution structur 76.7 1.7 5.9E-05 34.0 3.1 47 242-294 32-78 (99)
96 2yjp_A Putative ABC transporte 75.9 0.55 1.9E-05 41.6 0.0 11 248-258 80-90 (291)
97 1x3u_A Transcriptional regulat 75.8 1.5 5.3E-05 31.5 2.5 47 244-296 16-62 (79)
98 1ydx_A Type I restriction enzy 74.9 0.6 2.1E-05 43.8 0.0 15 262-276 162-177 (406)
99 2rnj_A Response regulator prot 73.7 1.3 4.5E-05 33.4 1.7 48 243-296 28-75 (91)
100 3mzy_A RNA polymerase sigma-H 73.6 2.1 7E-05 34.1 2.9 51 244-300 109-159 (164)
101 3uau_A JLPA, surface-exposed l 73.2 0.7 2.4E-05 43.5 0.0 10 282-291 58-67 (379)
102 2qko_A Possible transcriptiona 72.8 2 7E-05 35.7 2.8 42 250-292 34-75 (215)
103 3ulq_B Transcriptional regulat 72.0 2.5 8.5E-05 32.3 2.9 49 240-294 25-73 (90)
104 1iuf_A Centromere ABP1 protein 71.9 4.3 0.00015 33.4 4.6 51 239-289 6-60 (144)
105 1ku3_A Sigma factor SIGA; heli 71.9 2.3 7.8E-05 30.6 2.6 50 244-294 10-59 (73)
106 2lv7_A Calcium-binding protein 69.5 4.6 0.00016 31.0 4.0 48 240-287 25-79 (100)
107 1rp3_A RNA polymerase sigma fa 67.7 2.8 9.4E-05 35.7 2.6 49 244-297 187-235 (239)
108 2yln_A Putative ABC transporte 67.4 1.1 3.8E-05 39.5 0.0 11 247-257 81-91 (283)
109 3aqt_A Bacterial regulatory pr 66.0 1.7 5.8E-05 37.4 0.9 41 250-291 52-92 (245)
110 1tty_A Sigma-A, RNA polymerase 65.6 4.4 0.00015 30.2 3.0 52 244-296 18-69 (87)
111 1fi6_A EH domain protein REPS1 65.0 4.2 0.00014 30.3 2.8 44 244-287 2-50 (92)
112 2jn6_A Protein CGL2762, transp 64.8 4.8 0.00016 30.4 3.2 44 242-288 3-46 (97)
113 2px7_A 2-C-methyl-D-erythritol 64.6 1.4 4.7E-05 38.7 0.0 10 262-271 118-127 (236)
114 2lfw_A PHYR sigma-like domain; 64.6 2.9 0.0001 34.2 2.1 50 244-298 93-142 (157)
115 1svj_A Potassium-transporting 63.5 1.5 5.1E-05 37.3 0.0 34 246-279 34-69 (156)
116 2c07_A 3-oxoacyl-(acyl-carrier 63.2 1.5 5.2E-05 39.2 0.0 6 266-271 106-111 (285)
117 1s7o_A Hypothetical UPF0122 pr 63.1 4.5 0.00015 32.2 2.8 48 244-296 22-69 (113)
118 1or7_A Sigma-24, RNA polymeras 63.0 4.5 0.00015 33.4 2.9 48 245-297 141-188 (194)
119 1yx4_A 26S proteasome non-ATPa 62.5 1.6 5.4E-05 36.6 0.0 7 270-276 114-120 (132)
120 3b9f_I Protein C inhibitor; mi 62.2 1.6 5.5E-05 42.0 0.0 35 242-278 53-87 (395)
121 3g7r_A Putative transcriptiona 60.9 3.7 0.00013 34.5 2.1 41 249-290 40-80 (221)
122 2pmy_A RAS and EF-hand domain- 60.6 4.2 0.00014 29.9 2.1 46 242-287 18-68 (91)
123 3a5i_A Flagellar biosynthesis 60.1 1.9 6.3E-05 42.2 0.0 22 266-287 86-107 (389)
124 2l72_A Tgadf, actin depolymeri 59.7 1.9 6.5E-05 35.9 0.0 8 268-275 67-74 (139)
125 1c07_A Protein (epidermal grow 59.7 5.7 0.0002 29.8 2.8 44 244-287 3-51 (95)
126 2d2a_A SUFA protein; iron-sulf 59.6 1.9 6.5E-05 36.4 0.0 18 243-260 41-58 (145)
127 2hxo_A Putative TETR-family tr 59.6 8.2 0.00028 33.5 4.2 51 240-291 11-62 (237)
128 3fwy_A Light-independent proto 58.6 2 7E-05 40.0 0.0 7 151-157 1-7 (314)
129 1xsv_A Hypothetical UPF0122 pr 58.5 7.3 0.00025 30.8 3.3 49 244-297 25-73 (113)
130 2x48_A CAG38821; archeal virus 58.0 5.3 0.00018 26.8 2.1 39 244-287 13-53 (55)
131 4fl4_A Glycoside hydrolase fam 56.9 2.3 7.7E-05 33.3 0.0 11 246-256 32-42 (88)
132 3fiw_A Putative TETR-family tr 56.6 4.1 0.00014 34.8 1.6 51 241-292 21-72 (211)
133 3clo_A Transcriptional regulat 56.5 6.3 0.00022 35.0 2.9 49 243-297 196-244 (258)
134 2q24_A Putative TETR family tr 56.2 4.6 0.00016 32.9 1.8 40 249-290 20-59 (194)
135 2qwt_A Transcriptional regulat 56.1 2.1 7.1E-05 35.4 -0.4 40 249-290 18-57 (196)
136 3k9f_C DNA topoisomerase 4 sub 56.0 2.4 8.2E-05 39.5 0.0 6 148-153 2-7 (268)
137 3a4u_B Multiple coagulation fa 56.0 2.4 8.2E-05 34.3 0.0 16 260-275 82-97 (143)
138 2bu3_A ALR0975 protein; phytoc 56.0 2.4 8.2E-05 39.2 0.0 10 146-155 10-19 (254)
139 3kz9_A SMCR; transcriptional r 55.8 6.9 0.00023 31.5 2.8 40 250-290 23-62 (206)
140 3odm_A Pepcase, PEPC, phosphoe 55.3 2.5 8.5E-05 43.1 0.0 7 148-154 2-8 (560)
141 2jpc_A SSRB; DNA binding prote 55.0 3.3 0.00011 28.3 0.6 29 268-296 16-44 (61)
142 2q0o_A Probable transcriptiona 54.9 7.2 0.00025 34.0 3.0 48 242-295 173-220 (236)
143 2k27_A Paired box protein PAX- 53.9 11 0.00037 30.8 3.7 42 243-289 24-65 (159)
144 2rek_A Putative TETR-family tr 53.7 2.9 9.8E-05 34.2 0.1 39 250-290 22-60 (199)
145 1k8w_A TRNA pseudouridine synt 53.7 2.7 9.4E-05 40.1 0.0 13 245-257 116-128 (327)
146 3tla_A MCCF; serine protease, 53.2 2.8 9.7E-05 40.4 0.0 8 148-155 2-9 (371)
147 2v57_A TETR family transcripti 53.2 4.5 0.00015 32.6 1.2 38 250-290 20-57 (190)
148 4g2c_A DYP2; DYE peroxidase, o 53.2 2.8 9.7E-05 42.1 0.0 14 147-160 1-14 (493)
149 2qrj_A Saccharopine dehydrogen 53.0 2.9 9.8E-05 40.9 0.0 18 239-256 36-53 (394)
150 3fmy_A HTH-type transcriptiona 52.8 13 0.00045 26.4 3.6 41 243-290 9-49 (73)
151 3i5g_B Myosin regulatory light 52.7 19 0.00066 29.0 5.1 41 240-280 5-50 (153)
152 1ydx_A Type I restriction enzy 52.7 2.9 9.9E-05 39.1 0.0 6 148-153 2-7 (406)
153 2rn7_A IS629 ORFA; helix, all 52.5 10 0.00036 28.9 3.2 47 242-288 4-53 (108)
154 2r9r_B Paddle chimera voltage 52.2 3 0.0001 41.7 0.0 21 264-284 124-144 (514)
155 4faj_A PRGZ; substrate binding 52.1 3 0.0001 39.8 0.0 10 270-279 221-230 (564)
156 2iai_A Putative transcriptiona 51.6 8.4 0.00029 32.4 2.7 40 250-290 36-75 (230)
157 2apo_A Probable tRNA pseudouri 51.0 3.2 0.00011 40.0 0.0 6 148-153 2-7 (357)
158 1u78_A TC3 transposase, transp 50.9 13 0.00045 29.0 3.7 42 243-289 5-46 (141)
159 3dcf_A Transcriptional regulat 50.3 6.7 0.00023 32.0 1.9 42 249-291 36-77 (218)
160 3qrx_A Centrin; calcium-bindin 50.1 13 0.00043 29.3 3.5 52 235-286 12-70 (169)
161 3t21_A Endo-type membrane-boun 50.0 3.4 0.00012 36.5 0.0 27 265-291 138-165 (206)
162 4e4j_A Arginine deiminase; L-a 49.9 3.4 0.00012 40.2 0.0 7 280-286 113-119 (433)
163 3b0g_A NII3, nitrite reductase 49.9 3.4 0.00012 42.1 0.0 6 148-153 2-7 (591)
164 3t72_q RNA polymerase sigma fa 49.8 9.7 0.00033 29.8 2.6 53 244-297 19-71 (99)
165 1u78_A TC3 transposase, transp 49.8 14 0.00047 28.9 3.6 45 243-291 59-105 (141)
166 2qib_A TETR-family transcripti 49.5 4.6 0.00016 34.2 0.8 41 250-291 19-59 (231)
167 3bru_A Regulatory protein, TET 49.3 7.5 0.00026 31.9 2.0 41 250-291 36-76 (222)
168 1tyg_B YJBS; alpha beta barrel 49.2 3.6 0.00012 31.8 0.0 18 268-285 39-56 (87)
169 2rgt_A Fusion of LIM/homeobox 48.9 0.34 1.2E-05 41.0 -6.5 30 236-265 134-163 (169)
170 1l3l_A Transcriptional activat 48.6 11 0.00039 32.7 3.2 48 242-295 171-218 (234)
171 1j7q_A CAVP, calcium vector pr 48.1 17 0.00058 25.7 3.6 46 242-287 5-60 (86)
172 3j1z_P YIIP, cation efflux fam 47.8 4.9 0.00017 37.2 0.7 8 146-153 294-301 (306)
173 2y2z_A SIM16, SIMR, putative r 47.5 9.5 0.00033 34.1 2.6 50 244-294 26-76 (267)
174 2qtq_A Transcriptional regulat 47.4 8.6 0.0003 31.2 2.1 41 249-290 21-61 (213)
175 3q0w_A HTH-type transcriptiona 47.3 6.3 0.00022 33.4 1.3 40 250-290 50-89 (236)
176 2g7l_A TETR-family transcripti 47.3 11 0.00038 32.9 3.0 52 242-294 16-68 (243)
177 2q1z_A RPOE, ECF SIGE; ECF sig 46.4 3.2 0.00011 34.1 -0.7 47 245-296 136-182 (184)
178 1qwz_A NPQTN specific sortase 45.2 7.5 0.00026 35.1 1.5 20 242-261 126-145 (235)
179 3lys_A Prophage PI2 protein 01 45.2 14 0.00049 27.7 2.9 28 124-153 83-111 (112)
180 1pdn_C Protein (PRD paired); p 45.0 12 0.00043 28.3 2.6 40 244-288 17-56 (128)
181 2k27_A Paired box protein PAX- 44.8 19 0.00063 29.3 3.8 47 242-288 81-134 (159)
182 3g1o_A Transcriptional regulat 44.7 7.6 0.00026 33.3 1.4 40 250-290 49-88 (255)
183 2ktg_A Calmodulin, putative; e 44.5 16 0.00055 25.6 3.0 46 242-287 5-57 (85)
184 3cwr_A Transcriptional regulat 44.5 5.9 0.0002 32.0 0.6 41 250-291 23-63 (208)
185 1pdn_C Protein (PRD paired); p 44.1 20 0.00069 27.1 3.7 46 243-288 74-126 (128)
186 1iq3_A Ralbp1-interacting prot 44.0 6.3 0.00022 30.9 0.7 45 243-287 14-63 (110)
187 2px7_A 2-C-methyl-D-erythritol 44.0 4.8 0.00016 35.1 0.0 13 245-257 119-131 (236)
188 2np3_A Putative TETR-family re 43.5 7.3 0.00025 32.1 1.1 40 250-290 36-75 (212)
189 1dtl_A Cardiac troponin C; hel 43.4 23 0.00077 27.5 3.9 48 240-287 7-62 (161)
190 3on2_A Probable transcriptiona 43.3 11 0.00036 30.2 2.0 42 249-291 17-58 (199)
191 3qp6_A CVIR transcriptional re 43.1 18 0.00063 32.4 3.8 49 242-296 195-243 (265)
192 1l0o_C Sigma factor; bergerat 43.0 5.1 0.00017 33.9 0.0 44 245-293 199-242 (243)
193 3ako_A Venus; fluorescent prot 42.8 5.1 0.00018 35.0 0.0 6 260-265 91-96 (173)
194 2xi8_A Putative transcription 42.7 7.5 0.00025 26.2 0.8 23 268-290 17-39 (66)
195 1k78_A Paired box protein PAX5 42.7 36 0.0012 27.1 5.2 48 242-289 88-142 (149)
196 3gzi_A Transcriptional regulat 42.5 8 0.00027 31.7 1.2 40 250-290 23-62 (218)
197 3ccy_A Putative TETR-family tr 42.2 19 0.00067 29.2 3.5 41 249-290 19-59 (203)
198 2hxi_A Putative transcriptiona 41.4 16 0.00053 31.9 2.9 49 242-291 26-75 (241)
199 3c3w_A Two component transcrip 41.3 13 0.00046 31.4 2.4 46 243-294 148-193 (225)
200 3him_A Probable transcriptiona 41.3 21 0.00071 28.7 3.5 41 249-290 21-61 (211)
201 3bd1_A CRO protein; transcript 41.2 7.4 0.00025 27.9 0.7 23 268-290 14-36 (79)
202 3t21_A Endo-type membrane-boun 41.0 5.7 0.00019 35.0 0.0 6 272-277 96-101 (206)
203 2r1j_L Repressor protein C2; p 40.7 8.4 0.00029 26.1 0.9 24 268-291 21-44 (68)
204 3fwb_A Cell division control p 40.5 29 0.00099 26.8 4.2 48 239-286 11-65 (161)
205 2iu5_A DHAS, YCEG, HTH-type dh 40.3 17 0.00059 29.4 2.9 42 249-291 18-59 (195)
206 1avs_A Troponin C; muscle cont 40.3 24 0.00081 25.2 3.4 45 243-287 12-63 (90)
207 2yln_A Putative ABC transporte 40.0 6.1 0.00021 34.7 0.0 7 271-277 90-96 (283)
208 1d1d_A Protein (capsid protein 39.9 6.1 0.00021 36.6 0.0 28 245-274 54-81 (262)
209 2opo_A Polcalcin CHE A 3; calc 39.8 17 0.00058 25.6 2.4 44 244-287 4-53 (86)
210 2hku_A A putative transcriptio 39.8 8.9 0.0003 31.7 1.0 40 250-291 26-65 (215)
211 4amu_A Ornithine carbamoyltran 39.7 6.1 0.00021 38.2 0.0 9 245-253 39-47 (365)
212 1zug_A Phage 434 CRO protein; 39.6 8.9 0.0003 26.3 0.9 24 268-291 19-42 (71)
213 2fq4_A Transcriptional regulat 39.5 9.8 0.00033 31.0 1.2 43 250-293 18-60 (192)
214 2g7g_A RHA04620, putative tran 39.3 13 0.00043 31.6 1.9 40 250-292 17-56 (213)
215 2bnk_A Early protein GP16.7; D 39.0 36 0.0012 24.8 4.0 57 245-301 5-61 (67)
216 3v6g_A Probable transcriptiona 39.0 12 0.0004 31.5 1.7 40 250-290 20-59 (208)
217 3dew_A Transcriptional regulat 39.0 8.5 0.00029 30.9 0.7 41 249-290 13-53 (206)
218 2hin_A GP39, repressor protein 38.7 14 0.00048 27.3 1.9 23 268-290 13-35 (71)
219 2bgs_A Aldose reductase; holoe 38.6 6.6 0.00022 37.0 0.0 12 247-258 60-71 (344)
220 3f1b_A TETR-like transcription 38.5 9.7 0.00033 30.6 1.0 40 250-290 20-59 (203)
221 2rae_A Transcriptional regulat 38.4 16 0.00054 29.6 2.4 41 249-290 22-62 (207)
222 3kkc_A TETR family transcripti 37.9 5.4 0.00018 31.7 -0.6 42 249-291 17-58 (177)
223 2ofy_A Putative XRE-family tra 37.9 28 0.00095 24.9 3.4 24 267-290 29-52 (86)
224 3oe3_A Putative periplasmic pr 37.9 6.4 0.00022 31.3 -0.2 11 115-125 79-89 (98)
225 3bdn_A Lambda repressor; repre 37.8 13 0.00044 32.1 1.8 23 268-290 33-55 (236)
226 1eh2_A EPS15; calcium binding, 37.8 31 0.0011 26.7 3.9 45 242-286 6-54 (106)
227 3bs3_A Putative DNA-binding pr 37.8 10 0.00034 26.4 0.9 24 268-291 26-49 (76)
228 3rd3_A Probable transcriptiona 37.7 12 0.00042 29.8 1.6 42 249-291 15-56 (197)
229 2oi8_A Putative regulatory pro 37.5 11 0.00039 31.7 1.3 41 249-290 21-61 (216)
230 1adr_A P22 C2 repressor; trans 37.1 10 0.00035 26.3 0.9 24 268-291 21-44 (76)
231 3nxc_A HTH-type protein SLMA; 37.0 14 0.00046 30.0 1.7 35 256-291 37-71 (212)
232 2zcx_A SCO7815, TETR-family tr 37.0 11 0.00039 32.1 1.3 40 250-290 29-68 (231)
233 3ppb_A Putative TETR family tr 36.9 17 0.00057 28.9 2.2 42 249-291 14-55 (195)
234 3he0_A Transcriptional regulat 36.8 14 0.00049 29.5 1.8 42 248-290 15-56 (196)
235 3o9x_A Uncharacterized HTH-typ 36.8 19 0.00066 28.4 2.6 40 244-290 70-109 (133)
236 3fia_A Intersectin-1; EH 1 dom 36.7 28 0.00096 28.3 3.5 45 241-285 23-72 (121)
237 3jsj_A Putative TETR-family tr 36.6 13 0.00044 29.8 1.5 42 247-290 12-53 (190)
238 3omt_A Uncharacterized protein 36.6 12 0.0004 26.2 1.1 23 268-290 24-46 (73)
239 3c2b_A Transcriptional regulat 36.2 9.3 0.00032 31.4 0.6 45 249-294 20-64 (221)
240 3kkd_A Transcriptional regulat 36.2 14 0.00048 31.0 1.7 41 249-290 40-80 (237)
241 1k78_A Paired box protein PAX5 36.1 20 0.00068 28.7 2.6 41 243-288 31-71 (149)
242 1a04_A Nitrate/nitrite respons 35.9 22 0.00075 29.4 2.9 47 243-295 153-199 (215)
243 2dg7_A Putative transcriptiona 35.7 18 0.00062 29.1 2.3 42 249-291 12-53 (195)
244 3jrx_A Acetyl-COA carboxylase 35.4 7.9 0.00027 39.4 0.0 14 141-154 566-579 (587)
245 2dg8_A Putative TETR-family tr 35.4 13 0.00043 30.2 1.3 42 248-290 13-54 (193)
246 2np5_A Transcriptional regulat 35.2 11 0.00037 31.1 0.8 41 249-290 14-54 (203)
247 1r69_A Repressor protein CI; g 34.8 12 0.0004 25.4 0.8 24 268-291 17-40 (69)
248 2b5a_A C.BCLI; helix-turn-heli 34.3 12 0.00042 26.0 0.9 23 268-290 26-48 (77)
249 2kgr_A Intersectin-1; structur 34.3 23 0.00079 27.3 2.6 44 243-286 6-54 (111)
250 3kz3_A Repressor protein CI; f 34.1 13 0.00045 26.5 1.1 24 268-291 28-51 (80)
251 2kpj_A SOS-response transcript 34.0 12 0.00042 27.7 0.9 24 268-291 25-48 (94)
252 3f0c_A TETR-molecule A, transc 34.0 15 0.00052 29.9 1.5 41 249-290 16-56 (216)
253 3a5i_A Flagellar biosynthesis 34.0 8.6 0.00029 37.4 0.0 7 148-154 2-8 (389)
254 3lwj_A Putative TETR-family tr 33.7 11 0.00038 30.4 0.6 40 250-290 18-57 (202)
255 2joj_A Centrin protein; N-term 33.6 19 0.00066 24.6 1.8 43 245-287 1-50 (77)
256 3oti_A CALG3; calicheamicin, T 33.5 8.8 0.0003 35.3 0.0 14 269-282 144-157 (398)
257 1lmb_3 Protein (lambda repress 33.5 5.9 0.0002 29.0 -1.0 23 268-290 33-55 (92)
258 2i10_A Putative TETR transcrip 33.3 21 0.00072 29.3 2.3 43 248-291 15-57 (202)
259 2lhi_A Calmodulin, serine/thre 33.3 23 0.00078 29.2 2.6 39 242-280 2-45 (176)
260 3col_A Putative transcription 33.2 12 0.00042 29.7 0.9 41 249-290 15-55 (196)
261 2ef8_A C.ECOT38IS, putative tr 33.2 10 0.00034 27.0 0.3 23 268-290 26-48 (84)
262 1y7y_A C.AHDI; helix-turn-heli 33.2 13 0.00046 25.5 0.9 23 268-290 29-51 (74)
263 1pb6_A Hypothetical transcript 33.0 12 0.00042 30.3 0.8 40 250-290 24-63 (212)
264 1k8w_A TRNA pseudouridine synt 32.8 9.2 0.00031 36.5 0.0 9 263-271 116-124 (327)
265 3szt_A QCSR, quorum-sensing co 32.7 25 0.00086 30.7 2.9 48 241-294 172-219 (237)
266 2jrt_A Uncharacterized protein 32.7 34 0.0012 26.6 3.3 42 241-287 29-71 (95)
267 1eyb_A Homogentisate 1,2-dioxy 32.4 9.4 0.00032 38.1 0.0 7 148-154 2-8 (471)
268 3b7h_A Prophage LP1 protein 11 32.3 14 0.00048 25.8 0.9 23 268-290 23-45 (78)
269 3oc3_A Helicase MOT1, MOT1; re 31.9 9.7 0.00033 39.7 0.0 11 252-262 52-62 (800)
270 2oer_A Probable transcriptiona 31.8 23 0.00077 29.3 2.3 36 254-290 34-69 (214)
271 2cu7_A KIAA1915 protein; nucle 31.4 79 0.0027 22.7 5.0 47 240-290 7-54 (72)
272 2wiu_B HTH-type transcriptiona 31.3 44 0.0015 23.7 3.6 23 268-290 28-50 (88)
273 2a6c_A Helix-turn-helix motif; 31.3 15 0.00053 26.6 1.0 23 268-290 34-56 (83)
274 2roh_A RTBP1, telomere binding 31.2 1.7E+02 0.0058 23.8 7.4 35 236-270 25-59 (122)
275 3b81_A Transcriptional regulat 31.1 14 0.00049 29.7 0.9 41 249-290 16-56 (203)
276 2guh_A Putative TETR-family tr 30.7 13 0.00045 31.2 0.6 42 249-291 44-85 (214)
277 2k9q_A Uncharacterized protein 30.7 15 0.00051 26.0 0.9 23 268-290 18-40 (77)
278 4g2c_A DYP2; DYE peroxidase, o 30.2 11 0.00037 37.9 0.0 8 274-281 126-133 (493)
279 3vib_A MTRR; helix-turn-helix 30.1 16 0.00054 29.9 1.0 41 250-291 16-56 (210)
280 2wui_A MEXZ, transcriptional r 30.0 22 0.00076 29.2 2.0 41 250-291 17-57 (210)
281 3i5g_C Myosin catalytic light 29.7 45 0.0015 27.0 3.7 42 244-285 2-52 (159)
282 1rzs_A Antirepressor, regulato 29.7 15 0.00053 25.6 0.8 19 268-286 13-31 (61)
283 2w53_A Repressor, SMet; antibi 29.5 21 0.00072 29.4 1.7 41 249-290 16-56 (219)
284 2lie_A CCL2 lectin; sugar bind 35.3 12 0.00039 31.7 0.0 11 246-256 58-68 (153)
285 3mvp_A TETR/ACRR transcription 29.1 19 0.00065 29.1 1.3 40 250-290 32-71 (217)
286 3knw_A Putative transcriptiona 29.0 18 0.0006 29.3 1.1 42 249-291 19-60 (212)
287 2bu3_A ALR0975 protein; phytoc 28.9 12 0.0004 34.5 0.0 10 267-276 138-147 (254)
288 3tut_A RNA 3'-terminal phospha 28.7 12 0.00041 36.1 0.0 7 245-251 67-73 (358)
289 3tr9_A Dihydropteroate synthas 28.7 12 0.00041 35.4 0.0 9 121-129 282-290 (314)
290 3qkx_A Uncharacterized HTH-typ 28.4 21 0.00073 28.1 1.5 41 249-290 13-53 (188)
291 2zb9_A Putative transcriptiona 28.4 13 0.00046 30.5 0.2 41 250-291 29-69 (214)
292 3dpj_A Transcription regulator 28.4 18 0.00061 29.0 1.0 41 250-291 14-54 (194)
293 3e7q_A Transcriptional regulat 28.1 5.7 0.0002 32.2 -2.1 40 250-290 20-59 (215)
294 2ict_A Antitoxin HIGA; helix-t 28.0 17 0.00058 26.7 0.8 23 268-290 24-46 (94)
295 2kn2_A Calmodulin; S MAPK phos 27.8 42 0.0014 23.8 2.9 40 247-286 5-51 (92)
296 3f6w_A XRE-family like protein 27.6 18 0.00063 25.7 0.9 23 268-290 30-52 (83)
297 1wdc_B Scallop myosin; calcium 27.5 60 0.002 25.0 4.0 47 242-288 9-62 (156)
298 2d6y_A Putative TETR family re 27.2 22 0.00075 29.2 1.4 41 249-290 13-53 (202)
299 2yve_A Transcriptional regulat 27.1 33 0.0011 27.6 2.5 41 249-290 9-49 (185)
300 2pz9_A Putative regulatory pro 27.1 11 0.00039 31.5 -0.4 41 250-291 36-76 (226)
301 2fd5_A Transcriptional regulat 26.7 24 0.00082 28.0 1.5 41 249-290 12-52 (180)
302 3klo_A Transcriptional regulat 26.6 23 0.00077 29.8 1.4 45 244-294 159-203 (225)
303 3npi_A TETR family regulatory 26.4 15 0.00051 31.3 0.2 41 250-291 24-64 (251)
304 2ovk_B RLC, myosin regulatory 26.3 41 0.0014 25.9 2.8 47 240-286 5-58 (153)
305 2kvr_A Ubiquitin carboxyl-term 26.2 24 0.00082 28.9 1.4 23 268-290 72-94 (130)
306 2din_A Cell division cycle 5-l 26.1 97 0.0033 21.7 4.6 49 240-292 7-55 (66)
307 1j9i_A GPNU1 DBD;, terminase s 26.1 24 0.00081 25.0 1.2 22 268-289 5-26 (68)
308 2mys_C Myosin; muscle protein, 25.7 59 0.002 24.4 3.6 42 245-286 2-50 (149)
309 3lsg_A Two-component response 25.7 31 0.001 25.8 1.9 24 266-289 20-43 (103)
310 3s5r_A Transcriptional regulat 25.5 25 0.00084 28.5 1.4 41 249-290 15-55 (216)
311 1t33_A Putative transcriptiona 25.3 22 0.00074 29.2 1.0 40 250-291 18-57 (224)
312 2mys_B Myosin; muscle protein, 25.3 59 0.002 25.3 3.6 44 244-287 18-69 (166)
313 2l49_A C protein; P2 bacteriop 25.2 23 0.00078 26.1 1.0 24 268-291 20-43 (99)
314 3s8q_A R-M controller protein; 25.1 22 0.00076 25.2 0.9 23 268-290 27-49 (82)
315 3t76_A VANU, transcriptional r 25.0 23 0.00078 26.7 1.0 19 270-288 42-60 (88)
316 3qq6_A HTH-type transcriptiona 25.0 22 0.00076 25.5 0.9 21 268-288 26-46 (78)
317 1yio_A Response regulatory pro 24.9 29 0.001 28.4 1.8 45 244-294 142-186 (208)
318 1zk8_A Transcriptional regulat 24.8 26 0.0009 27.7 1.4 41 249-290 13-53 (183)
319 2xdn_A HTH-type transcriptiona 24.6 36 0.0012 27.7 2.3 40 250-290 17-56 (210)
320 3oc3_A Helicase MOT1, MOT1; re 24.5 16 0.00054 38.2 0.0 6 253-258 64-69 (800)
321 3lhq_A Acrab operon repressor 24.4 12 0.00041 30.3 -0.8 41 249-290 19-59 (220)
322 1irz_A ARR10-B; helix-turn-hel 24.2 61 0.0021 23.7 3.1 57 239-295 4-62 (64)
323 2o7t_A Transcriptional regulat 24.2 14 0.00049 30.0 -0.4 41 249-290 13-53 (199)
324 3dtp_E RLC, myosin regulatory 24.1 1.5E+02 0.0053 24.0 6.2 45 242-286 48-99 (196)
325 2cqq_A RSGI RUH-037, DNAJ homo 24.0 87 0.003 23.0 4.0 43 242-284 8-50 (72)
326 2pij_A Prophage PFL 6 CRO; tra 24.0 22 0.00076 24.3 0.7 23 268-290 16-38 (67)
327 3qqa_A CMER; alpha-helical, he 23.9 47 0.0016 26.7 2.8 41 249-290 24-64 (216)
328 2ewt_A BLDD, putative DNA-bind 23.8 22 0.00074 24.3 0.6 22 268-289 24-47 (71)
329 3qbm_A TETR transcriptional re 23.6 33 0.0011 27.2 1.8 41 249-290 12-52 (199)
330 2ibd_A Possible transcriptiona 23.5 23 0.00079 28.9 0.8 40 250-290 20-59 (204)
331 3on4_A Transcriptional regulat 23.5 31 0.0011 27.2 1.6 41 249-290 15-55 (191)
332 3gyk_A 27KDA outer membrane pr 23.4 71 0.0024 25.6 3.8 43 250-292 85-127 (175)
333 3lph_A Protein REV; helix-loop 23.1 35 0.0012 25.7 1.6 35 250-298 18-52 (72)
334 1x57_A Endothelial differentia 23.1 23 0.0008 25.8 0.7 23 268-290 29-51 (91)
335 3nrg_A TETR family transcripti 23.0 51 0.0017 26.6 2.9 41 249-290 18-58 (217)
336 1uxc_A FRUR (1-57), fructose r 23.0 25 0.00084 25.2 0.8 23 268-290 3-25 (65)
337 2fjr_A Repressor protein CI; g 23.0 30 0.001 28.6 1.5 25 267-291 22-46 (189)
338 3j04_B Myosin regulatory light 22.9 1.1E+02 0.0038 22.9 4.7 43 245-287 1-50 (143)
339 3trb_A Virulence-associated pr 22.8 54 0.0018 25.3 2.8 37 243-279 26-70 (104)
340 2a6h_F RNA polymerase sigma fa 22.6 44 0.0015 32.3 2.7 50 244-294 360-409 (423)
341 3qx3_A DNA topoisomerase 2-bet 22.6 18 0.00062 38.4 0.0 12 70-81 406-417 (803)
342 2zcm_A Biofilm operon icaabcd 22.5 37 0.0013 27.1 1.9 42 248-290 11-52 (192)
343 3c07_A Putative TETR-family tr 22.4 23 0.00077 31.2 0.6 42 249-291 46-87 (273)
344 3bqz_B HTH-type transcriptiona 22.3 38 0.0013 26.8 1.9 41 249-290 7-47 (194)
345 3vpr_A Transcriptional regulat 22.2 34 0.0012 27.4 1.6 43 250-293 9-51 (190)
346 2ppx_A AGR_C_3184P, uncharacte 22.2 27 0.00092 26.1 0.9 24 268-291 46-69 (99)
347 3t76_A VANU, transcriptional r 22.2 36 0.0012 25.6 1.6 45 240-284 33-84 (88)
348 4hku_A LMO2814 protein, TETR t 22.1 64 0.0022 25.7 3.3 41 250-291 13-53 (178)
349 3iz6_M 40S ribosomal protein S 22.1 47 0.0016 28.2 2.5 30 261-290 57-87 (152)
350 3hta_A EBRA repressor; TETR fa 22.1 24 0.00082 29.4 0.7 42 249-291 33-74 (217)
351 1exr_A Calmodulin; high resolu 22.0 68 0.0023 24.6 3.3 43 244-286 3-52 (148)
352 2pjp_A Selenocysteine-specific 21.9 49 0.0017 26.0 2.5 42 246-288 2-43 (121)
353 1aih_A HP1 integrase; DNA inte 21.7 1.1E+02 0.0039 24.1 4.8 42 240-281 2-43 (170)
354 1sgm_A Putative HTH-type trans 21.7 43 0.0015 26.3 2.1 41 249-290 11-52 (191)
355 3crj_A Transcription regulator 21.7 26 0.00089 28.6 0.8 40 250-290 20-59 (199)
356 2jml_A DNA binding domain/tran 21.6 26 0.0009 25.6 0.7 20 268-287 8-27 (81)
357 2f07_A YVDT; helix-turn-helix, 21.6 42 0.0014 27.2 2.0 41 249-290 15-55 (197)
358 3u0k_A Rcamp; fluorescent prot 21.5 78 0.0027 31.3 4.3 46 241-286 292-344 (440)
359 1qv0_A Obelin, OBL; photoprote 21.5 90 0.0031 24.8 4.1 39 242-280 10-59 (195)
360 4aci_A HTH-type transcriptiona 21.4 14 0.00047 29.6 -1.0 41 250-291 20-60 (191)
361 3ox6_A Calcium-binding protein 21.3 1.4E+02 0.0049 22.2 5.1 37 243-279 3-44 (153)
362 4ds7_A Calmodulin, CAM; protei 21.1 70 0.0024 23.9 3.2 44 243-286 3-53 (147)
363 3loc_A HTH-type transcriptiona 21.0 7.4 0.00025 31.6 -2.7 36 254-290 28-63 (212)
364 2ras_A Transcriptional regulat 20.9 40 0.0014 27.3 1.8 41 250-291 17-57 (212)
365 3osg_A MYB21; transcription-DN 20.9 63 0.0022 25.7 3.0 47 237-287 6-53 (126)
366 1yx7_A Calsensin, LAN3-6 antig 20.9 36 0.0012 23.5 1.4 33 252-284 8-49 (83)
367 1qjt_A EH1, epidermal growth f 20.9 24 0.00083 26.7 0.4 28 260-287 25-52 (99)
368 1y66_A Engrailed homeodomain; 20.9 9.1 0.00031 26.3 -1.8 44 245-288 4-47 (52)
369 1qgp_A Protein (double strande 20.8 27 0.00093 25.7 0.7 32 255-286 21-52 (77)
370 3ljl_A Transcriptional regulat 20.8 15 0.00052 29.1 -0.8 41 250-291 20-60 (156)
371 3eus_A DNA-binding protein; st 20.8 33 0.0011 25.0 1.1 23 268-290 30-52 (86)
372 2id3_A Putative transcriptiona 20.8 16 0.00056 30.5 -0.7 41 250-291 46-86 (225)
373 1op4_A Neural-cadherin; beta s 20.7 21 0.00071 30.6 0.0 14 281-294 101-114 (159)
374 1qbj_A Protein (double-strande 20.6 32 0.0011 25.8 1.0 20 267-286 29-48 (81)
375 1ug2_A 2610100B20RIK gene prod 20.6 3.1E+02 0.011 21.5 8.5 47 241-288 32-79 (95)
376 1l9z_H Sigma factor SIGA; heli 20.6 48 0.0016 32.5 2.6 50 244-294 375-424 (438)
377 1g2h_A Transcriptional regulat 20.6 1E+02 0.0034 21.3 3.6 37 245-286 18-54 (61)
378 3egq_A TETR family transcripti 20.5 37 0.0013 26.5 1.5 41 250-291 10-50 (170)
379 2l8n_A Transcriptional repress 20.5 36 0.0012 24.5 1.2 24 267-290 11-34 (67)
380 3eup_A Transcriptional regulat 20.4 22 0.00076 28.4 0.1 40 250-290 17-56 (204)
381 2hyt_A TETR-family transcripti 20.2 48 0.0016 26.8 2.1 40 250-290 18-57 (197)
382 3cjd_A Transcriptional regulat 20.2 25 0.00087 28.8 0.4 41 249-290 17-57 (198)
383 3jrx_A Acetyl-COA carboxylase 20.0 22 0.00075 36.2 0.0 12 152-163 574-585 (587)
384 2x7l_M HIV REV; nuclear export 20.0 48 0.0016 27.0 2.0 34 251-298 16-49 (115)
No 1
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=8.4e-20 Score=141.17 Aligned_cols=71 Identities=32% Similarity=0.520 Sum_probs=64.6
Q ss_pred cccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccCCCCCC
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKDGGSDA 306 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~~~~s~ 306 (317)
.+.||.|++|+.+|+.+||.+|..++||+..++++||.+|+|++++|++||+|||+|+||..+........
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~~~~~~ 75 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQS 75 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccCCCCCC
Confidence 45688999999999999999999999999999999999999999999999999999999988776654433
No 2
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=140.24 Aligned_cols=69 Identities=25% Similarity=0.434 Sum_probs=63.7
Q ss_pred cccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccCCCC
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKDGGS 304 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~~~~ 304 (317)
.+.||.|+.|+.+|+.+||.+|..++||+..++++||.+|||++++|++||+|||+|+||..+.....+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~~~~ 73 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENGG 73 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHHhcCC
Confidence 356889999999999999999999999999999999999999999999999999999999887766543
No 3
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.79 E-value=1.1e-19 Score=143.09 Aligned_cols=63 Identities=89% Similarity=1.328 Sum_probs=56.2
Q ss_pred cccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhc
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 298 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k 298 (317)
.+.||.|+.||.+|+.+||.+|..+.||+..+|++||..|||++++|++||+|||+|+||..|
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 88 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEHK 88 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhcC
Confidence 356889999999999999999999999999999999999999999999999999999998754
No 4
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-19 Score=140.99 Aligned_cols=64 Identities=31% Similarity=0.561 Sum_probs=60.5
Q ss_pred cccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcc
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKS 299 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~ 299 (317)
.++||.|+.|+.+|+.+||.+|..+.||+..++++||..|||++++|++||+|||+|+||..+.
T Consensus 20 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k~ 83 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKN 83 (84)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 4668899999999999999999999999999999999999999999999999999999997654
No 5
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-19 Score=139.39 Aligned_cols=65 Identities=43% Similarity=0.770 Sum_probs=60.5
Q ss_pred ccccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcc
Q psy3281 235 QFERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKS 299 (317)
Q Consensus 235 ~~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~ 299 (317)
..+.||.|+.|+.+|+.+||.+|..+.||+..++++||..|||++++|++||+|||+|+||..+.
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~s 78 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGPS 78 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccCC
Confidence 34667899999999999999999999999999999999999999999999999999999987653
No 6
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.78 E-value=1.1e-19 Score=141.17 Aligned_cols=71 Identities=80% Similarity=1.216 Sum_probs=57.8
Q ss_pred CCcchhc---ccccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhc
Q psy3281 228 LYPWMRS---QFERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 298 (317)
Q Consensus 228 ~~P~~~s---~~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k 298 (317)
.+||+.. ..++||.|+.||.+|+.+||.+|..+.||+..++++||.+|||++++|++||+|||+|+||..+
T Consensus 7 ~~p~~~~~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 7 FYPWMAIAGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp CCTTCC-----------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCccccCCCCCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhcc
Confidence 4555543 2456789999999999999999999999999999999999999999999999999999998654
No 7
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.77 E-value=2.2e-19 Score=135.10 Aligned_cols=65 Identities=94% Similarity=1.412 Sum_probs=61.3
Q ss_pred cCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccCC
Q psy3281 238 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKDG 302 (317)
Q Consensus 238 rRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~~ 302 (317)
+||.|+.||.+|+.+||..|..+.||+..++++||..|||++++|++||+|||+|+||..+.+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~~~ 66 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTKGE 66 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCCSS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccccCC
Confidence 47899999999999999999999999999999999999999999999999999999998876654
No 8
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=2.3e-19 Score=135.39 Aligned_cols=63 Identities=43% Similarity=0.688 Sum_probs=59.5
Q ss_pred cccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhc
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 298 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k 298 (317)
.+.||+|+.||.+|+.+||.+|..++||+..++++||.+|||++++|++||+|||+|+||..+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 356789999999999999999999999999999999999999999999999999999998664
No 9
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-19 Score=138.25 Aligned_cols=64 Identities=33% Similarity=0.412 Sum_probs=60.2
Q ss_pred cccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcc
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKS 299 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~ 299 (317)
.++||.|+.||.+|+.+||.+|..++||+..++++||.+|||++++|++||+|||+|+||..+.
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 78 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPS 78 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhccC
Confidence 4668899999999999999999999999999999999999999999999999999999986643
No 10
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3e-19 Score=134.65 Aligned_cols=63 Identities=32% Similarity=0.606 Sum_probs=59.7
Q ss_pred ccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcc
Q psy3281 237 ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKS 299 (317)
Q Consensus 237 krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~ 299 (317)
+.||.|+.|+.+|+.+||.+|..++||+..++++||.+|||++++|++||+|||+|+||..+.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGPS 68 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTSTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCCC
Confidence 567899999999999999999999999999999999999999999999999999999997653
No 11
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=1.7e-19 Score=139.53 Aligned_cols=66 Identities=36% Similarity=0.630 Sum_probs=62.0
Q ss_pred cccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccC
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKD 301 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~ 301 (317)
.+.||.|+.|+.+|+.+||.+|..++||+..++++||..|||++++|++||+|||+|+||..+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRN 70 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhh
Confidence 356789999999999999999999999999999999999999999999999999999999887655
No 12
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=2.5e-19 Score=134.96 Aligned_cols=64 Identities=28% Similarity=0.321 Sum_probs=60.3
Q ss_pred cccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcc
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKS 299 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~ 299 (317)
.+.||.|+.||.+|+.+||.+|..+.||+..++++||..|||++++|++||+|||+|+||..+.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhccc
Confidence 3568899999999999999999999999999999999999999999999999999999997654
No 13
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=3.1e-19 Score=134.46 Aligned_cols=64 Identities=31% Similarity=0.445 Sum_probs=60.1
Q ss_pred cccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcc
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKS 299 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~ 299 (317)
.+.||.|++|+.+|+.+||.+|..++||+..++++||..|||++++|++||+|||+|+||..+.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence 3568899999999999999999999999999999999999999999999999999999986654
No 14
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.76 E-value=5e-19 Score=134.86 Aligned_cols=66 Identities=41% Similarity=0.666 Sum_probs=61.1
Q ss_pred cccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccC
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKD 301 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~ 301 (317)
.+.||.|+.|+.+|+.+||.+|..++||+..++++||..|||++++|++||+|||+|+||..+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 70 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcccC
Confidence 356889999999999999999999999999999999999999999999999999999999765543
No 15
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.76 E-value=6.6e-19 Score=135.35 Aligned_cols=67 Identities=39% Similarity=0.609 Sum_probs=62.4
Q ss_pred cccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccCC
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKDG 302 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~~ 302 (317)
.++||.|+.||.+|+.+||.+|..+.||+..++++||..|||++++|++||+|||+|+|+..+.+..
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~~~ 73 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGY 73 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccccC
Confidence 3567889999999999999999999999999999999999999999999999999999998776654
No 16
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.2e-19 Score=133.98 Aligned_cols=63 Identities=38% Similarity=0.644 Sum_probs=59.4
Q ss_pred cccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhc
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 298 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k 298 (317)
.+.||.|+.||.+|+.+||.+|..++||+..++++||.+|||++++|++||+|||+|+||..+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 356889999999999999999999999999999999999999999999999999999998654
No 17
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.75 E-value=6.8e-19 Score=132.26 Aligned_cols=65 Identities=38% Similarity=0.621 Sum_probs=61.2
Q ss_pred cCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccCC
Q psy3281 238 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKDG 302 (317)
Q Consensus 238 rRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~~ 302 (317)
.||.|+.||.+|+.+||..|..+.||+..++++||..|||++++|++||+|||+|+|+..+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~~~ 66 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKD 66 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccccc
Confidence 47899999999999999999999999999999999999999999999999999999998776553
No 18
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=7.1e-19 Score=132.71 Aligned_cols=63 Identities=44% Similarity=0.790 Sum_probs=59.5
Q ss_pred ccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcc
Q psy3281 237 ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKS 299 (317)
Q Consensus 237 krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~ 299 (317)
+.+|.|++|+.+|+.+||.+|..++||+..++++||..|||++++|++||+|||+|+|+..+.
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPS 68 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCCC
Confidence 457889999999999999999999999999999999999999999999999999999997653
No 19
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=6.4e-19 Score=141.10 Aligned_cols=63 Identities=57% Similarity=0.865 Sum_probs=57.2
Q ss_pred ccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcc
Q psy3281 237 ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKS 299 (317)
Q Consensus 237 krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~ 299 (317)
+.+|.|+.||.+|+.+||.+|..+.||+..++++||..|||++++|++||+|||+|+||..+.
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 457889999999999999999999999999999999999999999999999999999998764
No 20
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.75 E-value=7.2e-19 Score=132.13 Aligned_cols=64 Identities=39% Similarity=0.679 Sum_probs=60.4
Q ss_pred cCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccC
Q psy3281 238 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKD 301 (317)
Q Consensus 238 rRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~ 301 (317)
+||.|+.||.+|+.+||.+|..+.||+..++++||..|||++++|++||+|||+|+|+..+.+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~~ 65 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKA 65 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHhh
Confidence 5789999999999999999999999999999999999999999999999999999999876543
No 21
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.75 E-value=6.2e-19 Score=130.47 Aligned_cols=61 Identities=69% Similarity=1.097 Sum_probs=56.5
Q ss_pred ccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhh
Q psy3281 237 ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 297 (317)
Q Consensus 237 krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~ 297 (317)
+.||.|+.||.+|+.+||..|..++||+..++++||..|||++++|++||+|||+|+||.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 3578999999999999999999999999999999999999999999999999999999864
No 22
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.75 E-value=6.2e-19 Score=133.95 Aligned_cols=65 Identities=40% Similarity=0.670 Sum_probs=60.9
Q ss_pred ccccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcc
Q psy3281 235 QFERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKS 299 (317)
Q Consensus 235 ~~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~ 299 (317)
..+++|.|+.|+.+|+.+||.+|..+.||+..++++||..|||++++|++||+|||+|+||..+.
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhh
Confidence 34668899999999999999999999999999999999999999999999999999999997665
No 23
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.75 E-value=5.5e-19 Score=130.23 Aligned_cols=60 Identities=32% Similarity=0.574 Sum_probs=53.2
Q ss_pred ccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhh
Q psy3281 237 ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 296 (317)
Q Consensus 237 krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~ 296 (317)
+++|.|+.||.+|+.+||.+|..+.||+..++++||..|||++++|++||+|||+|+||.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 457899999999999999999999999999999999999999999999999999999985
No 24
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=1.8e-18 Score=137.63 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=55.3
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccC
Q psy3281 244 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKD 301 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~ 301 (317)
+||.+||.+||+.|..++||+..+|++||..|||++++|+|||+|||+|||++++...
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~~ 74 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKME 74 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHhh
Confidence 7899999999999999999999999999999999999999999999999998776655
No 25
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.75 E-value=6.2e-19 Score=129.57 Aligned_cols=60 Identities=48% Similarity=0.764 Sum_probs=53.8
Q ss_pred ccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhh
Q psy3281 237 ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 296 (317)
Q Consensus 237 krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~ 296 (317)
+.||.|+.||.+|+.+||..|..++||+..++++||..|||++++|++||+|||+|+||.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccccccC
Confidence 357899999999999999999999999999999999999999999999999999999973
No 26
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.74 E-value=8.3e-19 Score=134.79 Aligned_cols=65 Identities=65% Similarity=0.918 Sum_probs=61.1
Q ss_pred cccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhccc
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSK 300 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k 300 (317)
.+.+|.|+.||.+|+.+||.+|..+.||+..++++||..|||++++|++||+|||+|+|+..+.+
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~~ 75 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 75 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhhc
Confidence 35678999999999999999999999999999999999999999999999999999999987754
No 27
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.74 E-value=9.2e-19 Score=139.53 Aligned_cols=69 Identities=41% Similarity=0.748 Sum_probs=61.6
Q ss_pred cccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccCCCC
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKDGGS 304 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~~~~ 304 (317)
.++||.|+.||.+|+.+||.+|..+.||+..++++||..|||++++|++||+|||+|+||..+......
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~ 83 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAE 83 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999877665433
No 28
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=1.8e-18 Score=131.69 Aligned_cols=66 Identities=24% Similarity=0.266 Sum_probs=60.6
Q ss_pred CCCCcccCHHHHHHHHHHhhh-CCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccCCCC
Q psy3281 239 KRGRQTYTRYQTLELEKEFHF-NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKDGGS 304 (317)
Q Consensus 239 RR~Rt~fT~~Ql~~LE~~F~~-n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~~~~ 304 (317)
+++|+.||.+|+.+||.+|.. ++||+..++++||..|||++++|++||+|||+|+||..+.....+
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~~~~~~ 69 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPSECR 69 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTCCSSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccCCCcCC
Confidence 578999999999999999995 999999999999999999999999999999999999886655433
No 29
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=1.3e-18 Score=126.41 Aligned_cols=58 Identities=45% Similarity=0.720 Sum_probs=55.9
Q ss_pred CCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhh
Q psy3281 239 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 296 (317)
Q Consensus 239 RR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~ 296 (317)
||.|+.||.+|+.+||..|..++||+..++++||..|||++++|++||+|||+|+||.
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 58 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhccC
Confidence 5789999999999999999999999999999999999999999999999999999973
No 30
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=1.8e-18 Score=131.11 Aligned_cols=66 Identities=27% Similarity=0.340 Sum_probs=60.4
Q ss_pred CCCCcccCHHHHHHHHHHhhh-CCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccCCCC
Q psy3281 239 KRGRQTYTRYQTLELEKEFHF-NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKDGGS 304 (317)
Q Consensus 239 RR~Rt~fT~~Ql~~LE~~F~~-n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~~~~ 304 (317)
.++|+.|+.+|+.+||.+|.. ++||+..++++||.+|||++++|++||+|||+|+||..+.....+
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~~~~~~ 68 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPSECR 68 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccCCCcCC
Confidence 468899999999999999996 999999999999999999999999999999999999886655433
No 31
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.74 E-value=1.3e-18 Score=135.44 Aligned_cols=60 Identities=15% Similarity=0.131 Sum_probs=57.4
Q ss_pred cccCCCCcccCHHHHHHHHHHhhh----CCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhh
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHF----NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 295 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~----n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK 295 (317)
.++||.||.||.+|+.+||.+|+. ++||+..+|++||.+|||++++|+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 467889999999999999999999 999999999999999999999999999999999886
No 32
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.74 E-value=9.1e-19 Score=130.57 Aligned_cols=62 Identities=26% Similarity=0.324 Sum_probs=58.8
Q ss_pred ccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhc
Q psy3281 237 ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 298 (317)
Q Consensus 237 krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k 298 (317)
++||.|+.||.+|+.+||.+|..++||+..++++||..|||++++|++||+|||+|+|+...
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 46789999999999999999999999999999999999999999999999999999998653
No 33
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=9.9e-19 Score=135.14 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=59.2
Q ss_pred cccCCCCcccCHHHHHHHHHHhhhC----CCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhc
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHFN----RYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 298 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~n----~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k 298 (317)
.++||.|+.||.+|+.+||.+|+.+ +||+..++++||.+|||++++|++||+|||+|+|+...
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~ 72 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGI 72 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccC
Confidence 4568899999999999999999999 99999999999999999999999999999999998543
No 34
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.74 E-value=1.4e-18 Score=134.65 Aligned_cols=64 Identities=36% Similarity=0.594 Sum_probs=59.6
Q ss_pred ccccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhc
Q psy3281 235 QFERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 298 (317)
Q Consensus 235 ~~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k 298 (317)
..++||.|+.|+.+|+.+||.+|..++||+..++++||..|||++++|++||+|||+|+||..+
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 4567889999999999999999999999999999999999999999999999999999999764
No 35
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=2e-18 Score=137.72 Aligned_cols=69 Identities=26% Similarity=0.309 Sum_probs=63.7
Q ss_pred cccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcC---------------CCcccchhhcccchhhhhhhhccc
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC---------------LTERQIKIWFQNRRMKWKKENKSK 300 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~Lg---------------Lse~qVkiWFQNRRaK~KK~~k~k 300 (317)
.++||.|+.|+.+|+.+||.+|+.++||+..+|++||.+|+ |++.+|++||+|||+|+|++.+..
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~~ 84 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIA 84 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 46688999999999999999999999999999999999999 999999999999999999988875
Q ss_pred CCCC
Q psy3281 301 DGGS 304 (317)
Q Consensus 301 ~~~~ 304 (317)
....
T Consensus 85 ~~~~ 88 (95)
T 2cuf_A 85 AILE 88 (95)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 5433
No 36
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.73 E-value=8.2e-19 Score=131.67 Aligned_cols=64 Identities=39% Similarity=0.641 Sum_probs=60.3
Q ss_pred ccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhccc
Q psy3281 237 ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSK 300 (317)
Q Consensus 237 krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k 300 (317)
++||.|+.||.+|+.+||.+|..++||+..++++||..|||++++|++||+|||+|+||..+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhcc
Confidence 4578999999999999999999999999999999999999999999999999999999977653
No 37
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.9e-18 Score=131.37 Aligned_cols=64 Identities=25% Similarity=0.297 Sum_probs=58.9
Q ss_pred CCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccCC
Q psy3281 239 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKDG 302 (317)
Q Consensus 239 RR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~~ 302 (317)
.++|++||.+|+.+||..|..+.||+..++++||..|||++++|++||+|||+|+|+..+...+
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~~~ 71 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETKKSG 71 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhcccC
Confidence 3567789999999999999999999999999999999999999999999999999998766554
No 38
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.73 E-value=2e-18 Score=126.44 Aligned_cols=58 Identities=52% Similarity=0.751 Sum_probs=55.6
Q ss_pred CCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhh
Q psy3281 239 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 296 (317)
Q Consensus 239 RR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~ 296 (317)
||.|+.||.+|+.+||..|..++||+..++++||..|||++++|++||+|||+|+||.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 6889999999999999999999999999999999999999999999999999999984
No 39
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-18 Score=128.86 Aligned_cols=61 Identities=36% Similarity=0.537 Sum_probs=58.3
Q ss_pred CCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcc
Q psy3281 239 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKS 299 (317)
Q Consensus 239 RR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~ 299 (317)
||.|+.||.+|+.+||.+|..++||+..++++||..|||++++|++||+|||+|+|+..+.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 6889999999999999999999999999999999999999999999999999999987654
No 40
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=4.4e-18 Score=131.83 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=58.8
Q ss_pred CCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccCCC
Q psy3281 240 RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKDGG 303 (317)
Q Consensus 240 R~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~~~ 303 (317)
.+|++||.+|+.+||++|..++||+..+|++||+.|||++++|++||+|||+|+|+........
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~w~~~ 68 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKWFRD 68 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCSSTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHHHHHH
Confidence 4567799999999999999999999999999999999999999999999999999987766543
No 41
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.72 E-value=2.7e-18 Score=133.84 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=56.6
Q ss_pred ccccCCCCcccCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhh
Q psy3281 235 QFERKRGRQTYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 295 (317)
Q Consensus 235 ~~krRR~Rt~fT~~Ql~~LE~~F~~-----n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK 295 (317)
..++||.||.||.+|+.+|| .|.. ++||+..+|++||.+|+|++++|+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 34678899999999999999 7999 999999999999999999999999999999999986
No 42
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-18 Score=131.54 Aligned_cols=63 Identities=17% Similarity=0.316 Sum_probs=58.6
Q ss_pred CCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccC
Q psy3281 239 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKD 301 (317)
Q Consensus 239 RR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~ 301 (317)
++.|++||.+|+.+||.+|..++||+..++++||.+|||++++|++||+|||+|+||..+...
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~~ 71 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSRS 71 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSSC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccCC
Confidence 456899999999999999999999999999999999999999999999999999999766544
No 43
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.72 E-value=2.7e-18 Score=124.05 Aligned_cols=57 Identities=46% Similarity=0.727 Sum_probs=55.0
Q ss_pred cCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhh
Q psy3281 238 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 294 (317)
Q Consensus 238 rRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~K 294 (317)
+||.|+.|+.+|+.+||..|..+.||+..++++||..|||++++|++||+|||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 578899999999999999999999999999999999999999999999999999986
No 44
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.72 E-value=5.4e-18 Score=128.87 Aligned_cols=65 Identities=22% Similarity=0.297 Sum_probs=60.4
Q ss_pred ccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccC
Q psy3281 237 ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKD 301 (317)
Q Consensus 237 krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~ 301 (317)
..++.|+.||.+|+.+||..|..+.||+..++++||.+|||++++|++||+|||+|+||.+....
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 69 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQC 69 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSCC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCCC
Confidence 34688999999999999999999999999999999999999999999999999999999766544
No 45
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.72 E-value=2.6e-18 Score=125.83 Aligned_cols=58 Identities=45% Similarity=0.735 Sum_probs=50.7
Q ss_pred CCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhc
Q psy3281 241 GRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 298 (317)
Q Consensus 241 ~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k 298 (317)
.|+.||.+|+.+||..|..++||+..++++||..|||++++|++||+|||+|+||..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 5899999999999999999999999999999999999999999999999999998764
No 46
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.71 E-value=2.8e-18 Score=125.75 Aligned_cols=59 Identities=25% Similarity=0.450 Sum_probs=48.6
Q ss_pred cccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhh
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 294 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~K 294 (317)
.+.+|.|+.|+.+|+.+||.+|..++||+..++++||..|||++.+|++||+|||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45678899999999999999999999999999999999999999999999999999976
No 47
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.71 E-value=5.1e-18 Score=135.74 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=56.9
Q ss_pred cccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhc
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 298 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k 298 (317)
...+|+|++|+.+|+.+||..|..+.||+..++++||.+|||++++|++||+|||+|+||...
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcc
Confidence 455688999999999999999999999999999999999999999999999999999998654
No 48
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.4e-17 Score=130.44 Aligned_cols=61 Identities=21% Similarity=0.220 Sum_probs=56.1
Q ss_pred CcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccCC
Q psy3281 242 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKDG 302 (317)
Q Consensus 242 Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~~ 302 (317)
+..||.+||.+||.+|..++||+..+|++||.+|||++++|++||+|||+|+|++++....
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~~~ 77 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAVLD 77 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCCCC
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhhhc
Confidence 3448999999999999999999999999999999999999999999999999987776653
No 49
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=129.82 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=61.1
Q ss_pred cccCCCCcccCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccCC
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKDG 302 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~---n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~~ 302 (317)
.++||.|+.|+.+++.+||.+|.. ++||+..+|++||..+||++++|++||+|||+|+|+....+..
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~~~ 74 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRR 74 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCCCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHhcc
Confidence 356788999999999999999987 5999999999999999999999999999999999987766554
No 50
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1.1e-17 Score=127.09 Aligned_cols=64 Identities=23% Similarity=0.239 Sum_probs=59.4
Q ss_pred cccCCCCcccCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcc
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKS 299 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~---n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~ 299 (317)
.+.||.|+.|+.+++.+||.+|.. ++||+..++++||..+||++++|++||+|||+|+|+....
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 356788999999999999999987 9999999999999999999999999999999999987654
No 51
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.70 E-value=2.3e-18 Score=134.78 Aligned_cols=63 Identities=27% Similarity=0.455 Sum_probs=58.6
Q ss_pred CCCCcccCHHHHHHHHHHh---hhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccC
Q psy3281 239 KRGRQTYTRYQTLELEKEF---HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKD 301 (317)
Q Consensus 239 RR~Rt~fT~~Ql~~LE~~F---~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~ 301 (317)
||+|++|+.+++.+||.+| ..++||+..++++||..|||++++|++||+|||+|+|+..+...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 67 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGGH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccccc
Confidence 6889999999999999999 89999999999999999999999999999999999999766554
No 52
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.69 E-value=9.8e-18 Score=121.40 Aligned_cols=54 Identities=44% Similarity=0.863 Sum_probs=51.1
Q ss_pred cccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhh
Q psy3281 243 QTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 296 (317)
Q Consensus 243 t~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~ 296 (317)
|.||.+|+.+||+.|..++||+..+|++||..|||++++|++||+|||+|+||.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 679999999999999999999999999999999999999999999999999985
No 53
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.69 E-value=1.3e-17 Score=126.56 Aligned_cols=63 Identities=27% Similarity=0.455 Sum_probs=59.1
Q ss_pred CCCCcccCHHHHHHHHHHh---hhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccC
Q psy3281 239 KRGRQTYTRYQTLELEKEF---HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKD 301 (317)
Q Consensus 239 RR~Rt~fT~~Ql~~LE~~F---~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~ 301 (317)
||+|++|+.+++.+||.+| ..++||+..++++||..|||++++|++||+|||+|+|+..+...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~~ 67 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccccc
Confidence 6889999999999999999 89999999999999999999999999999999999998766544
No 54
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.68 E-value=9.8e-18 Score=146.52 Aligned_cols=68 Identities=22% Similarity=0.277 Sum_probs=53.0
Q ss_pred cccccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccC
Q psy3281 234 SQFERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKD 301 (317)
Q Consensus 234 s~~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~ 301 (317)
...++||+|++|+.+|+.+||++|..++||+..+|++||..|||++++|++||+|||+|+||..+...
T Consensus 95 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~ 162 (164)
T 2xsd_C 95 AQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPAAG 162 (164)
T ss_dssp -----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC---
T ss_pred ccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCCCC
Confidence 44577889999999999999999999999999999999999999999999999999999999776543
No 55
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.2e-17 Score=134.47 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=64.3
Q ss_pred ccccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHc---------------------CCCcccchhhcccchhhh
Q psy3281 235 QFERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL---------------------CLTERQIKIWFQNRRMKW 293 (317)
Q Consensus 235 ~~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~L---------------------gLse~qVkiWFQNRRaK~ 293 (317)
..++||.|+.|+..++.+||++|+.++||+..+|++||++| +|++.+|++||+|||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 34678999999999999999999999999999999999999 799999999999999999
Q ss_pred hhhhcccCCCCC
Q psy3281 294 KKENKSKDGGSD 305 (317)
Q Consensus 294 KK~~k~k~~~~s 305 (317)
|++.+......+
T Consensus 83 kr~~~~~~~~~~ 94 (102)
T 2da6_A 83 AFRQKLAMDAYS 94 (102)
T ss_dssp HHHHHHHHSSSS
T ss_pred HHhhHhhhcccc
Confidence 998877665444
No 56
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=1e-17 Score=123.95 Aligned_cols=59 Identities=25% Similarity=0.394 Sum_probs=56.2
Q ss_pred ccCCCCcccCHHHHHHHHHHh---hhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhh
Q psy3281 237 ERKRGRQTYTRYQTLELEKEF---HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 295 (317)
Q Consensus 237 krRR~Rt~fT~~Ql~~LE~~F---~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK 295 (317)
..+|.|+.|+.+++.+||.+| ..++||+..++++||..|||++++|++||+|||+|+||
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 347889999999999999999 89999999999999999999999999999999999987
No 57
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.67 E-value=2e-17 Score=143.63 Aligned_cols=62 Identities=31% Similarity=0.409 Sum_probs=55.1
Q ss_pred ccccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhh
Q psy3281 235 QFERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 296 (317)
Q Consensus 235 ~~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~ 296 (317)
..++||+|+.|+.+|+.+||++|..++||+..+|++||.+|||++++|++||+|||+|+||.
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 34678899999999999999999999999999999999999999999999999999999985
No 58
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.67 E-value=1.9e-17 Score=129.90 Aligned_cols=61 Identities=28% Similarity=0.328 Sum_probs=57.3
Q ss_pred ccccCCCCcccCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhh
Q psy3281 235 QFERKRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 295 (317)
Q Consensus 235 ~~krRR~Rt~fT~~Ql~~LE~~F~~---n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK 295 (317)
..+++|+|++|+.+|+.+||.+|.. ++||+..++++||..+||++++|++||+|||+|+|.
T Consensus 24 ~~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 24 KSTKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp EESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 4566778999999999999999999 999999999999999999999999999999999883
No 59
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.66 E-value=5e-17 Score=118.83 Aligned_cols=56 Identities=30% Similarity=0.348 Sum_probs=53.6
Q ss_pred CCcccCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhh
Q psy3281 241 GRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 296 (317)
Q Consensus 241 ~Rt~fT~~Ql~~LE~~F~~---n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~ 296 (317)
+|++|+.+|+.+||.+|.. ++||+..++++||.++||++++|++||+|||+|+||.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4689999999999999999 9999999999999999999999999999999999974
No 60
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.65 E-value=3.5e-17 Score=132.41 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=54.3
Q ss_pred hcccccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHH------------------cC---CCcccchhhcccchh
Q psy3281 233 RSQFERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHA------------------LC---LTERQIKIWFQNRRM 291 (317)
Q Consensus 233 ~s~~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~------------------Lg---Lse~qVkiWFQNRRa 291 (317)
+..+++||.|+.|+.+|+.+||.+|+.++||+..+|++||.. || |++.+|++||+|||+
T Consensus 4 ~~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~ 83 (99)
T 1lfb_A 4 DPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 83 (99)
T ss_dssp ---------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHH
Confidence 345677899999999999999999999999999999999999 88 999999999999999
Q ss_pred hhhhhhcccC
Q psy3281 292 KWKKENKSKD 301 (317)
Q Consensus 292 K~KK~~k~k~ 301 (317)
|+|++.+...
T Consensus 84 k~k~k~~~~~ 93 (99)
T 1lfb_A 84 EEAFRHKLAM 93 (99)
T ss_dssp TTSCCC----
T ss_pred HHHHhchhhh
Confidence 9987665544
No 61
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=2.3e-17 Score=125.91 Aligned_cols=59 Identities=24% Similarity=0.357 Sum_probs=54.9
Q ss_pred CCCCcccCHHHHHHHHHHh-hhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhh
Q psy3281 239 KRGRQTYTRYQTLELEKEF-HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 297 (317)
Q Consensus 239 RR~Rt~fT~~Ql~~LE~~F-~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~ 297 (317)
.+.|++++.+|+.+||+.| ..+.||+..+|++||.+|||++++|++||||||+|+|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 4566778899999999999 9999999999999999999999999999999999999754
No 62
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.64 E-value=7.1e-17 Score=138.43 Aligned_cols=62 Identities=23% Similarity=0.378 Sum_probs=55.9
Q ss_pred ccccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhh
Q psy3281 235 QFERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 296 (317)
Q Consensus 235 ~~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~ 296 (317)
..++||.|++|+.+|+.+||.+|..++||+..+|++||..|||++++|++||+|||+|+||.
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 34667889999999999999999999999999999999999999999999999999999985
No 63
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.64 E-value=5.7e-17 Score=126.40 Aligned_cols=61 Identities=26% Similarity=0.285 Sum_probs=55.4
Q ss_pred CCCCcccCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcc
Q psy3281 239 KRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKS 299 (317)
Q Consensus 239 RR~Rt~fT~~Ql~~LE~~F~~---n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~ 299 (317)
+++|++|+.+|+.+||.+|.. ++||+..++++||..+||++++|++||+|||+|+|+....
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 456677999999999999999 9999999999999999999999999999999999986543
No 64
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.64 E-value=9e-17 Score=122.08 Aligned_cols=59 Identities=42% Similarity=0.701 Sum_probs=54.4
Q ss_pred cccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccC
Q psy3281 243 QTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKD 301 (317)
Q Consensus 243 t~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~ 301 (317)
..+|..|+.+||+.|..++||+..+|++||.+|||++++|++||+|||+|+||..+..+
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~~~ 67 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSE 67 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSSCC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhhhh
Confidence 35789999999999999999999999999999999999999999999999998765543
No 65
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=1.3e-16 Score=121.13 Aligned_cols=60 Identities=22% Similarity=0.180 Sum_probs=56.5
Q ss_pred cccCCCCcccCHHHHHHHHHHhhh-CCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhh
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHF-NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 295 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~-n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK 295 (317)
+++||.||.|+.+||.+|+.+|+. +.||+.++|+.||.+|||++++|++||||||--.|.
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~ 65 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecC
Confidence 467899999999999999999999 999999999999999999999999999999987654
No 66
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.62 E-value=1.8e-16 Score=136.25 Aligned_cols=60 Identities=25% Similarity=0.426 Sum_probs=57.5
Q ss_pred cccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhh
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 295 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK 295 (317)
.++||+|++|+.+|+.+||++|..++||+..+|++||.+|||++++|++||+|||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 356788999999999999999999999999999999999999999999999999999997
No 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.61 E-value=2.5e-16 Score=118.81 Aligned_cols=51 Identities=20% Similarity=0.382 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhh
Q psy3281 246 TRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 296 (317)
Q Consensus 246 T~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~ 296 (317)
|.+||.+||+.|..++||+..++++||..|||++++|++||+|||+|+|+.
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 789999999999999999999999999999999999999999999999974
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.8e-16 Score=117.43 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=51.1
Q ss_pred CcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhh
Q psy3281 242 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 296 (317)
Q Consensus 242 Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~ 296 (317)
+..++.+|+.+||++|..++||+..+|++||++|||++++|++||+|||+|.++.
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 4456799999999999999999999999999999999999999999999998763
No 69
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.59 E-value=4.8e-16 Score=134.38 Aligned_cols=60 Identities=30% Similarity=0.426 Sum_probs=57.2
Q ss_pred ccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhh
Q psy3281 237 ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 296 (317)
Q Consensus 237 krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~ 296 (317)
++||+|+.|+.+|+.+||.+|..++||+..+|++||..|||++++|++||+|||+|+||.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 567889999999999999999999999999999999999999999999999999999984
No 70
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.58 E-value=5e-16 Score=134.77 Aligned_cols=66 Identities=21% Similarity=0.227 Sum_probs=55.0
Q ss_pred cccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccC
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKD 301 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~ 301 (317)
.+.||.|+.|+.+|+.+||.+|..++||+..+|++||..|||++++|++||+|||+|+|+......
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~~~ 160 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLEHH 160 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-----
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCCCC
Confidence 356889999999999999999999999999999999999999999999999999999998655433
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.58 E-value=3.4e-16 Score=117.48 Aligned_cols=50 Identities=26% Similarity=0.349 Sum_probs=46.7
Q ss_pred HHHHHHHHHHh-hhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhh
Q psy3281 247 RYQTLELEKEF-HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 296 (317)
Q Consensus 247 ~~Ql~~LE~~F-~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~ 296 (317)
.+++.+||++| ..++||+..+|++||++|||++++|++||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 45799999999 579999999999999999999999999999999999873
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=2.3e-15 Score=113.15 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=50.8
Q ss_pred cccCHHHHHHHHHHhh---hCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccC
Q psy3281 243 QTYTRYQTLELEKEFH---FNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKD 301 (317)
Q Consensus 243 t~fT~~Ql~~LE~~F~---~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~ 301 (317)
.+|+.+++.+|+.+|. .++||+..++++||..+||++++|++||+|||+|+||....+.
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 3799999999999999 9999999999999999999999999999999999998766554
No 73
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.46 E-value=4e-14 Score=112.60 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=62.3
Q ss_pred cccCHHHHHHHHHHhhh---CCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccCCCCCCCCCCCCCCCC
Q psy3281 243 QTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKDGGSDAGSDITPATSP 316 (317)
Q Consensus 243 t~fT~~Ql~~LE~~F~~---n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~~~~s~~s~~sp~tSP 316 (317)
..|+.+++.+|+.+|.. ++||+.++|++||+++||++++|++||+|+|.|+|+....+.+.....-+++-..||
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~~~~~p~~~~i~r~~~~ 86 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAK 86 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHCSSCCSCCCCSSCCC
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHhcCCCcccccccCCCCC
Confidence 35889999999999987 899999999999999999999999999999999999877666554444455544444
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.43 E-value=2.1e-14 Score=128.83 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=54.0
Q ss_pred ccccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcC---------------------CCcccchhhcccchhhh
Q psy3281 235 QFERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC---------------------LTERQIKIWFQNRRMKW 293 (317)
Q Consensus 235 ~~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~Lg---------------------Lse~qVkiWFQNRRaK~ 293 (317)
..++||.|+.|+..|+.+||++|..++||+..+|++||..|+ |++.+|++||+|||+|+
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 356788999999999999999999999999999999999999 99999999999999998
Q ss_pred hh
Q psy3281 294 KK 295 (317)
Q Consensus 294 KK 295 (317)
|.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 75
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.1e-13 Score=102.28 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhh
Q psy3281 247 RYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 294 (317)
Q Consensus 247 ~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~K 294 (317)
++|+.+||.+|..|.+|+.+++..||..+||++++|++||+|||++..
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~~ 61 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQY 61 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccccc
Confidence 678999999999999999999999999999999999999999998533
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.31 E-value=6.2e-13 Score=121.35 Aligned_cols=60 Identities=18% Similarity=0.276 Sum_probs=54.0
Q ss_pred ccccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcC---------------------CCcccchhhcccchhhh
Q psy3281 235 QFERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC---------------------LTERQIKIWFQNRRMKW 293 (317)
Q Consensus 235 ~~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~Lg---------------------Lse~qVkiWFQNRRaK~ 293 (317)
.+++||.|+.|+..++.+||++|..++||+..+|++||..|+ |++.+|++||+|||+++
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 456788999999999999999999999999999999999988 89999999999999875
Q ss_pred h
Q psy3281 294 K 294 (317)
Q Consensus 294 K 294 (317)
.
T Consensus 219 ~ 219 (221)
T 2h8r_A 219 A 219 (221)
T ss_dssp C
T ss_pred h
Confidence 3
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.26 E-value=8.6e-13 Score=125.68 Aligned_cols=56 Identities=25% Similarity=0.414 Sum_probs=53.4
Q ss_pred CCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhh
Q psy3281 239 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 294 (317)
Q Consensus 239 RR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~K 294 (317)
++.|+.|+.+++.+||+.|..++||++.+|++||++|||++++|++||+|||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 46678899999999999999999999999999999999999999999999999986
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.46 E-value=2.4e-08 Score=67.09 Aligned_cols=23 Identities=70% Similarity=1.141 Sum_probs=20.1
Q ss_pred ccchhhcccchhhhhhhhcccCC
Q psy3281 280 RQIKIWFQNRRMKWKKENKSKDG 302 (317)
Q Consensus 280 ~qVkiWFQNRRaK~KK~~k~k~~ 302 (317)
++|+|||||||+||||..+....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~ 23 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDAR 23 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTT
T ss_pred CCceeccHHHHHHHHHHhHHHHH
Confidence 58999999999999998887553
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.40 E-value=0.0077 Score=45.58 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=36.6
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhccc
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 288 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQN 288 (317)
.++|+.+|...+.+..++...|+.+..|+..+|+.||-.
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 467999999999999999999999999999999999954
No 80
>3oka_C N-terminal His-affinity TAG; GT-B fold, alpha-mannosyltransferase, GDP-MAN binding, trans; HET: GDD; 2.20A {Escherichia coli}
Probab=90.55 E-value=0.083 Score=30.32 Aligned_cols=6 Identities=67% Similarity=1.420 Sum_probs=2.3
Q ss_pred CCCCCC
Q psy3281 148 NNHHHH 153 (317)
Q Consensus 148 ~hHhhh 153 (317)
+|||||
T Consensus 2 ghhhhh 7 (21)
T 3oka_C 2 GHHHHH 7 (26)
T ss_pred Cccccc
Confidence 343333
No 81
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=90.49 E-value=0.067 Score=46.42 Aligned_cols=31 Identities=10% Similarity=0.076 Sum_probs=24.0
Q ss_pred CCCcccCHHHHHHHHHHhhh-----------C--CCCCHHHHHH
Q psy3281 240 RGRQTYTRYQTLELEKEFHF-----------N--RYLTRRRRIE 270 (317)
Q Consensus 240 R~Rt~fT~~Ql~~LE~~F~~-----------n--~yPs~~er~e 270 (317)
+..|.|+.+++..|.+.|.. + .+++..|...
T Consensus 40 ~~~t~~s~~ei~~l~~~F~~~D~~~~~~d~~~~dG~I~~~E~~~ 83 (214)
T 2l4h_A 40 QDLTFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILS 83 (214)
T ss_dssp HSCCSCCHHHHHHHHHHHHHHSCGGGCCHHHHTTSEECHHHHTT
T ss_pred HHhCCCCHHHHHHHHHHHHHhCcccccccccccCCcCCHHHHHH
Confidence 45678999999999999976 4 6777766655
No 82
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=89.37 E-value=0.52 Score=35.65 Aligned_cols=45 Identities=18% Similarity=0.331 Sum_probs=32.8
Q ss_pred CCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhccc
Q psy3281 239 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 288 (317)
Q Consensus 239 RR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQN 288 (317)
|+.+..|+.++...+...+.. . ....+||+++||+...|..|...
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~-g----~s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHD-G----ESKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHH-T----CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHC-C----CCHHHHHHHHCcCHHHHHHHHHH
Confidence 456678899886555555542 2 23568899999999999999853
No 83
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=88.58 E-value=0.35 Score=33.90 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=32.6
Q ss_pred CcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhccc
Q psy3281 242 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 288 (317)
Q Consensus 242 Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQN 288 (317)
|..|+.+....+...+... ........++|+++||+...|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 4578888876665555433 322233678999999999999999754
No 84
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=86.57 E-value=0.68 Score=36.81 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=38.6
Q ss_pred CCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhh
Q psy3281 240 RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 292 (317)
Q Consensus 240 R~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK 292 (317)
++|+.||.++...+...+..+...+ ..+||+.+|++...|..|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 3577899999877777775555444 3368999999999999999877654
No 85
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=86.24 E-value=0.37 Score=31.52 Aligned_cols=43 Identities=7% Similarity=0.164 Sum_probs=28.7
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 244 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
.++.+++..+...+... ....+||+.||++...|..|+.....
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHccc
Confidence 34555555554445432 23568899999999999999975443
No 86
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=84.54 E-value=0.42 Score=36.21 Aligned_cols=51 Identities=10% Similarity=0.099 Sum_probs=39.3
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcc
Q psy3281 244 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKS 299 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~ 299 (317)
.++..+..+|...|-.. ....+||+.||++...|+.+...-|.|.|+..+.
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~ 87 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQE 87 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888887654322 3467899999999999999998888888876544
No 87
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=83.68 E-value=1.1 Score=28.62 Aligned_cols=40 Identities=8% Similarity=0.203 Sum_probs=28.1
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhccc
Q psy3281 244 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 288 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQN 288 (317)
.++.++...+...+.. .. ...+||+.||++...|..|+..
T Consensus 5 ~l~~~~~~~i~~~~~~-g~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL-NV----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHhh
Confidence 4667766555455532 22 3668899999999999999853
No 88
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=81.97 E-value=0.66 Score=32.56 Aligned_cols=49 Identities=12% Similarity=-0.063 Sum_probs=36.8
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhh
Q psy3281 244 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 297 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~ 297 (317)
.++..+..+|...|... ....+||..+|++...|+.|...-|.|.|+..
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 47888888888765322 34678999999999999999887777766543
No 89
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=80.93 E-value=0.89 Score=32.36 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=38.8
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhh
Q psy3281 244 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 297 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~ 297 (317)
.++..+..+|...|-.+.+ .....++||+.+|++...|+.+...-+.|.|+..
T Consensus 5 ~L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~ 57 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 57 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCC
T ss_pred cCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888743222 1234578999999999999999887777766543
No 90
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=80.88 E-value=0.93 Score=34.77 Aligned_cols=51 Identities=18% Similarity=0.131 Sum_probs=38.6
Q ss_pred cccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcc
Q psy3281 243 QTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKS 299 (317)
Q Consensus 243 t~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~ 299 (317)
..++..+..+|...++ . ....+||..||+++..|+.+..+-|.|.+...+.
T Consensus 26 ~~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~ 76 (95)
T 3c57_A 26 SGLTDQERTLLGLLSE--G----LTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRT 76 (95)
T ss_dssp -CCCHHHHHHHHHHHT--T----CCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred hcCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHH
Confidence 3588999999887533 2 2347899999999999999998777777665443
No 91
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=80.58 E-value=0.33 Score=46.97 Aligned_cols=10 Identities=10% Similarity=0.112 Sum_probs=5.5
Q ss_pred HHHHHHHHhh
Q psy3281 249 QTLELEKEFH 258 (317)
Q Consensus 249 Ql~~LE~~F~ 258 (317)
..+.|.+.|.
T Consensus 97 Ra~dL~~af~ 106 (371)
T 3tla_A 97 RAQEFNELVY 106 (371)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 4555666654
No 92
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=80.32 E-value=1 Score=33.58 Aligned_cols=49 Identities=20% Similarity=0.078 Sum_probs=37.4
Q ss_pred CcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhh
Q psy3281 242 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 296 (317)
Q Consensus 242 Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~ 296 (317)
-..++..+..+|..+++ . ....+||+.||+++..|+.+..+-+.|.+..
T Consensus 19 ~~~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQ--G----LPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp GGGSCHHHHHHHHHHTT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred HccCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 34688999999887432 2 3567899999999999999988766666543
No 93
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=77.08 E-value=0.61 Score=39.76 Aligned_cols=40 Identities=13% Similarity=0.019 Sum_probs=30.5
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
++...+.|....|-. ....+||++.|++...|-.+|.||-
T Consensus 49 l~aA~~l~~~~G~~~-~tv~~IA~~AGvs~~t~Y~~F~sKe 88 (229)
T 3bni_A 49 LDACADLLDEVGYDA-LSTRAVALRADVPIGSVYRFFGNKR 88 (229)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHhcChhh-ccHHHHHHHHCCCchhHHHHcCCHH
Confidence 444455577776644 3477889999999999999999974
No 94
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=76.98 E-value=1.5 Score=30.98 Aligned_cols=48 Identities=19% Similarity=0.177 Sum_probs=36.5
Q ss_pred CcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhh
Q psy3281 242 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 295 (317)
Q Consensus 242 Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK 295 (317)
...++..+..+|..++ ..+ ...+||+.+|++...|+.++.+-+.|.+.
T Consensus 9 ~~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 9 KPLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 4568899999998743 222 45789999999999999998776666554
No 95
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=76.74 E-value=1.7 Score=33.97 Aligned_cols=47 Identities=17% Similarity=-0.032 Sum_probs=36.1
Q ss_pred CcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhh
Q psy3281 242 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 294 (317)
Q Consensus 242 Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~K 294 (317)
...++..++++|+..++- ...++||+.||++++.|+.+..+-+.|..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G------~s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEG------FLVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHHT------CCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 456899999999876532 23488999999999999999876655544
No 96
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=75.86 E-value=0.55 Score=41.61 Aligned_cols=11 Identities=0% Similarity=-0.103 Sum_probs=4.3
Q ss_pred HHHHHHHHHhh
Q psy3281 248 YQTLELEKEFH 258 (317)
Q Consensus 248 ~Ql~~LE~~F~ 258 (317)
...++++.+|+
T Consensus 80 ~~~dl~~~i~~ 90 (291)
T 2yjp_A 80 FDVEIAKDLAK 90 (291)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 33344444443
No 97
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=75.80 E-value=1.5 Score=31.52 Aligned_cols=47 Identities=19% Similarity=0.130 Sum_probs=35.0
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhh
Q psy3281 244 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 296 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~ 296 (317)
.++..+..+|..+|. . ....+||..+|+++..|+.++.+-+.|.+..
T Consensus 16 ~L~~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 16 TLSERERQVLSAVVA--G----LPNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp HHCHHHHHHHHHHTT--T----CCHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred hCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 467888888876432 2 2456899999999999999988777666643
No 98
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=74.90 E-value=0.6 Score=43.80 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=10.3
Q ss_pred CC-CHHHHHHHHHHcC
Q psy3281 262 YL-TRRRRIEIAHALC 276 (317)
Q Consensus 262 yP-s~~er~eLA~~Lg 276 (317)
.| +.+|.++||..|.
T Consensus 162 lP~~l~eQ~~I~~~l~ 177 (406)
T 1ydx_A 162 FTSNKNEQHAIANTLS 177 (406)
T ss_dssp ECCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 47 7777777776654
No 99
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=73.75 E-value=1.3 Score=33.38 Aligned_cols=48 Identities=21% Similarity=0.063 Sum_probs=36.2
Q ss_pred cccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhh
Q psy3281 243 QTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 296 (317)
Q Consensus 243 t~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~ 296 (317)
..++..+..+|..++. . ....+||..||+++..|+.+..+-|.|.+..
T Consensus 28 ~~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK--G----YSNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp GGCCSHHHHHHHHHHT--T----CCTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred hcCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 4588889888887432 2 2346789999999999999988766666543
No 100
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=73.59 E-value=2.1 Score=34.12 Aligned_cols=51 Identities=20% Similarity=0.165 Sum_probs=37.6
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhccc
Q psy3281 244 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSK 300 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k 300 (317)
.++..+..+|. .| .......+||+.||++...|+.+...-|.|.|+.-+..
T Consensus 109 ~L~~~~r~v~~-~~-----~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~~ 159 (164)
T 3mzy_A 109 NFSKFEKEVLT-YL-----IRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIKEE 159 (164)
T ss_dssp HSCHHHHHHHH-HH-----TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HH-----HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 46666666666 32 23345788999999999999999988888887765543
No 101
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface, cell adhesion; 2.70A {Campylobacter jejuni subsp}
Probab=73.24 E-value=0.7 Score=43.49 Aligned_cols=10 Identities=40% Similarity=0.497 Sum_probs=4.7
Q ss_pred chhhcccchh
Q psy3281 282 IKIWFQNRRM 291 (317)
Q Consensus 282 VkiWFQNRRa 291 (317)
||+-|.|-..
T Consensus 58 ikIefsnF~C 67 (379)
T 3uau_A 58 IKIEFSDFKC 67 (379)
T ss_dssp CEEECCCCEE
T ss_pred ceEEeeccee
Confidence 4555554433
No 102
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=72.83 E-value=2 Score=35.69 Aligned_cols=42 Identities=5% Similarity=-0.122 Sum_probs=32.8
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhh
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 292 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK 292 (317)
++...+.|....|-. ....+||++.|++...|-.+|.||..-
T Consensus 34 l~aa~~lf~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~L 75 (215)
T 2qko_A 34 VNAAIEVLAREGARG-LTFRAVDVEANVPKGTASNYFPSRDDL 75 (215)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHSSSTTTCHHHHCSCHHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHcCCCcchHHHhCCCHHHH
Confidence 555566677777644 447789999999999999999998543
No 103
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=71.99 E-value=2.5 Score=32.31 Aligned_cols=49 Identities=24% Similarity=0.199 Sum_probs=34.9
Q ss_pred CCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhh
Q psy3281 240 RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 294 (317)
Q Consensus 240 R~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~K 294 (317)
.....||..++.+|...++ . ....+||..|+++++.|+....+-+.|..
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~~--G----~s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVEK--G----FTNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp ----CCCHHHHHHHHHHHT--T----CCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccccCCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 4456789999999987652 2 24678999999999999988766554443
No 104
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=71.93 E-value=4.3 Score=33.37 Aligned_cols=51 Identities=14% Similarity=0.185 Sum_probs=40.0
Q ss_pred CCCCcccCHHHHHHHHHHh-hhCCCCCHHHHHHHH-HHc--CCCcccchhhcccc
Q psy3281 239 KRGRQTYTRYQTLELEKEF-HFNRYLTRRRRIEIA-HAL--CLTERQIKIWFQNR 289 (317)
Q Consensus 239 RR~Rt~fT~~Ql~~LE~~F-~~n~yPs~~er~eLA-~~L--gLse~qVkiWFQNR 289 (317)
+++|.++|-++...|..++ +.++-.+..+...+| .++ +++...|..|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5788999999999999998 677777766555543 266 78999999999764
No 105
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=71.90 E-value=2.3 Score=30.57 Aligned_cols=50 Identities=12% Similarity=0.043 Sum_probs=37.2
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhh
Q psy3281 244 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 294 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~K 294 (317)
.++..+..+|...|-...- ......+||..+|+++..|+.|...-+.|.|
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4788888999888742110 1133568999999999999999887777766
No 106
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=69.54 E-value=4.6 Score=30.96 Aligned_cols=48 Identities=13% Similarity=0.218 Sum_probs=38.5
Q ss_pred CCCcccCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHcC--CCcccchhhcc
Q psy3281 240 RGRQTYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALC--LTERQIKIWFQ 287 (317)
Q Consensus 240 R~Rt~fT~~Ql~~LE~~F~~-----n~yPs~~er~eLA~~Lg--Lse~qVkiWFQ 287 (317)
+....++.+++..|+++|.. +.+++..|...+.+.+| +++..|+.+|+
T Consensus 25 ~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 25 QRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 44567899999999999863 56999999999888887 56777887774
No 107
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=67.72 E-value=2.8 Score=35.66 Aligned_cols=49 Identities=10% Similarity=0.038 Sum_probs=37.1
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhh
Q psy3281 244 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 297 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~ 297 (317)
.++..+..+|...|- ......+||+.||++...|+.++..-|.|.|+.-
T Consensus 187 ~L~~~~r~vl~l~~~-----~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 187 KLPEREKLVIQLIFY-----EELPAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TSCHHHHHHHHHHHT-----SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh-----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 356677777766552 2345678999999999999999988888877654
No 108
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=67.41 E-value=1.1 Score=39.49 Aligned_cols=11 Identities=9% Similarity=-0.073 Sum_probs=4.5
Q ss_pred HHHHHHHHHHh
Q psy3281 247 RYQTLELEKEF 257 (317)
Q Consensus 247 ~~Ql~~LE~~F 257 (317)
....++++.++
T Consensus 81 G~~~dl~~~i~ 91 (283)
T 2yln_A 81 GYDVEVTRAVA 91 (283)
T ss_dssp SHHHHHHHHHH
T ss_pred eehHHHHHHHH
Confidence 33334444444
No 109
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=66.00 E-value=1.7 Score=37.44 Aligned_cols=41 Identities=10% Similarity=0.004 Sum_probs=31.3
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
++...+.|....|-. ....+||++.|++...|-.+|.||..
T Consensus 52 l~aA~~lf~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sKe~ 92 (245)
T 3aqt_A 52 ITSARTLMAERGVDN-VGIAEITEGANIGTGTFYNYFPDREQ 92 (245)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHTTSCGGGGGGTCSSHHH
T ss_pred HHHHHHHHHhcCccc-CcHHHHHHHhCCChHHHHHHcCCHHH
Confidence 455555677766643 34678899999999999999999853
No 110
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=65.56 E-value=4.4 Score=30.24 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=37.5
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhh
Q psy3281 244 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 296 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~ 296 (317)
.++..+..+|...|-...- ......+||..+|++...|+.|...-+.|.|+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~ 69 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRHP 69 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTT
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4678888888877642100 123467889999999999999988777776654
No 111
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=65.03 E-value=4.2 Score=30.30 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=35.5
Q ss_pred ccCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHcCCCcccchhhcc
Q psy3281 244 TYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCLTERQIKIWFQ 287 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~-----n~yPs~~er~eLA~~LgLse~qVkiWFQ 287 (317)
+++.+++..|++.|.. +.+++..+...+.+.+|++...|..+|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4678889999999863 4588999998888888998888776664
No 112
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=64.84 E-value=4.8 Score=30.35 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=30.1
Q ss_pred CcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhccc
Q psy3281 242 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 288 (317)
Q Consensus 242 Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQN 288 (317)
|..||.++.......+.... .....+||+.+||+...|..|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~---g~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSD---GASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGG---GSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC---CChHHHHHHHHCcCHHHHHHHHHH
Confidence 35688887655554443220 124678999999999999999753
No 113
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=64.63 E-value=1.4 Score=38.70 Aligned_cols=10 Identities=10% Similarity=0.355 Sum_probs=4.3
Q ss_pred CCCHHHHHHH
Q psy3281 262 YLTRRRRIEI 271 (317)
Q Consensus 262 yPs~~er~eL 271 (317)
+.+.+....|
T Consensus 118 ~~~~~~i~~l 127 (236)
T 2px7_A 118 FVSRGLVARV 127 (236)
T ss_dssp CCCHHHHHHH
T ss_pred cCCHHHHHHH
Confidence 3444444444
No 114
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=64.62 E-value=2.9 Score=34.21 Aligned_cols=50 Identities=8% Similarity=0.030 Sum_probs=36.7
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhc
Q psy3281 244 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 298 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k 298 (317)
.++..+..+|.- .|......++||+.||+++..|+.+...-|.+.|+.-+
T Consensus 93 ~Lp~~~r~vl~L-----~~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~ 142 (157)
T 2lfw_A 93 RMTPLSRQALLL-----TAMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTR 142 (157)
T ss_dssp TSCTTHHHHHTT-----TSSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred hCCHHHHHHHHH-----HHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 356666666643 34444567899999999999999999877777776543
No 115
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=63.49 E-value=1.5 Score=37.25 Aligned_cols=34 Identities=12% Similarity=0.045 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHhhh-CCCCCHHHHHHHHHHc-CCCc
Q psy3281 246 TRYQTLELEKEFHF-NRYLTRRRRIEIAHAL-CLTE 279 (317)
Q Consensus 246 T~~Ql~~LE~~F~~-n~yPs~~er~eLA~~L-gLse 279 (317)
+.+++..|-..-+. +..|-...+.+.|++. +|..
T Consensus 34 ~e~elL~lAAs~E~~SeHPla~AIv~~A~~~~~l~~ 69 (156)
T 1svj_A 34 DEKTLADAAQLASLADETPEGRSIVILAKQRFNLRE 69 (156)
T ss_dssp CHHHHHHHHHHTTSSCCSHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHhCcCCCHHHHHHHHHHHHhcCCCc
Confidence 34444433333332 2245555555556655 5543
No 116
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=63.16 E-value=1.5 Score=39.17 Aligned_cols=6 Identities=17% Similarity=0.185 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy3281 266 RRRIEI 271 (317)
Q Consensus 266 ~er~eL 271 (317)
+..+++
T Consensus 106 ~~v~~~ 111 (285)
T 2c07_A 106 EEISEV 111 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 117
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=63.14 E-value=4.5 Score=32.23 Aligned_cols=48 Identities=13% Similarity=0.004 Sum_probs=37.8
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhh
Q psy3281 244 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 296 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~ 296 (317)
.++..+..+|...|... ....++|..+|++...|+.|...-|.|.|+.
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 57888888887765433 3467899999999999999998888777664
No 118
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=62.98 E-value=4.5 Score=33.39 Aligned_cols=48 Identities=8% Similarity=-0.060 Sum_probs=35.4
Q ss_pred cCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhh
Q psy3281 245 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 297 (317)
Q Consensus 245 fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~ 297 (317)
++..+..+|...|- .....++||+.||+++..|+.+...-|.|.|+.-
T Consensus 141 L~~~~r~vl~l~~~-----~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 141 LPEDLRMAITLREL-----DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp SCHHHHHHHHHHHT-----TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 56666666655442 2234678999999999999999988888877654
No 119
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=62.49 E-value=1.6 Score=36.64 Aligned_cols=7 Identities=14% Similarity=0.149 Sum_probs=2.6
Q ss_pred HHHHHcC
Q psy3281 270 EIAHALC 276 (317)
Q Consensus 270 eLA~~Lg 276 (317)
.+|.++.
T Consensus 114 a~ALqMS 120 (132)
T 1yx4_A 114 AYAMQMS 120 (132)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 3333333
No 120
>3b9f_I Protein C inhibitor; michaelis complex, acute phase, blood coagulation, cleavage of basic residues, disease mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens} PDB: 2ol2_A*
Probab=62.16 E-value=1.6 Score=41.99 Aligned_cols=35 Identities=9% Similarity=0.073 Sum_probs=16.6
Q ss_pred CcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCC
Q psy3281 242 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 278 (317)
Q Consensus 242 Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLs 278 (317)
-..|++.-+.......... -....+++|.+.|++.
T Consensus 53 Niv~SP~Si~~aLaml~~G--A~g~T~~el~~~L~~~ 87 (395)
T 3b9f_I 53 NIFFSPVSISMSLAMLSLG--AGSSTKMQILEGLGLN 87 (395)
T ss_dssp CEEECHHHHHHHHHHHGGG--CCHHHHHHHHHHTTC-
T ss_pred CEEEcHHHHHHHHHHHHHH--cccHHHHHHHHHhCCC
Confidence 4556666554444333222 1234555666666654
No 121
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=60.94 E-value=3.7 Score=34.46 Aligned_cols=41 Identities=10% Similarity=-0.033 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++.-.+.|....|-. ....+||++.|++...|-.+|.||-
T Consensus 40 Il~aA~~lf~~~G~~~-~t~~~IA~~AGvs~~tlY~~F~sKe 80 (221)
T 3g7r_A 40 LLGTATRIFYAEGIHS-VGIDRITAEAQVTRATLYRHFSGKD 80 (221)
T ss_dssp HHHHHHHHHHHHCSTT-SCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHhCccc-CCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 3445555577777654 3477889999999999999999984
No 122
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=60.61 E-value=4.2 Score=29.85 Aligned_cols=46 Identities=15% Similarity=0.089 Sum_probs=37.7
Q ss_pred CcccCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHcCCCcccchhhcc
Q psy3281 242 RQTYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCLTERQIKIWFQ 287 (317)
Q Consensus 242 Rt~fT~~Ql~~LE~~F~~-----n~yPs~~er~eLA~~LgLse~qVkiWFQ 287 (317)
...++.+++..|+..|.. +.+++..|...+...+|++...|+.+|.
T Consensus 18 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 18 GADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp -CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 346788889999998853 5689999999999999999888888874
No 123
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=60.09 E-value=1.9 Score=42.16 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCCCcccchhhcc
Q psy3281 266 RRRIEIAHALCLTERQIKIWFQ 287 (317)
Q Consensus 266 ~er~eLA~~LgLse~qVkiWFQ 287 (317)
.-|..||.++|+-.=.|+++..
T Consensus 86 ~iRr~~a~elG~~lP~IrIrDn 107 (389)
T 3a5i_A 86 SIRKKFAQDMGFLPPVVHIRDN 107 (389)
T ss_dssp HHHHHHHHHTSSCCCCEEEEEC
T ss_pred HHHHHHHHHcCCCCCceEEEeC
Confidence 3478899999998888888763
No 124
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii}
Probab=59.75 E-value=1.9 Score=35.89 Aligned_cols=8 Identities=38% Similarity=0.194 Sum_probs=3.4
Q ss_pred HHHHHHHc
Q psy3281 268 RIEIAHAL 275 (317)
Q Consensus 268 r~eLA~~L 275 (317)
.++|...|
T Consensus 67 ~~el~~~L 74 (139)
T 2l72_A 67 ADEFRGAL 74 (139)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 34444443
No 125
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=59.73 E-value=5.7 Score=29.77 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=35.3
Q ss_pred ccCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHcCCCcccchhhcc
Q psy3281 244 TYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCLTERQIKIWFQ 287 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~-----n~yPs~~er~eLA~~LgLse~qVkiWFQ 287 (317)
.++.+++..|++.|.. +.+++..|...+.+.+|+++..|+.+|.
T Consensus 3 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3577788888888853 4589999999888889999888887764
No 126
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}
Probab=59.62 E-value=1.9 Score=36.36 Aligned_cols=18 Identities=11% Similarity=0.043 Sum_probs=13.8
Q ss_pred cccCHHHHHHHHHHhhhC
Q psy3281 243 QTYTRYQTLELEKEFHFN 260 (317)
Q Consensus 243 t~fT~~Ql~~LE~~F~~n 260 (317)
..+|+...+.|++.++..
T Consensus 41 ItiTe~Aa~~lk~ll~~~ 58 (145)
T 2d2a_A 41 LTLTPAAAIHIRELVAKQ 58 (145)
T ss_dssp CEECHHHHHHHHHHHHHS
T ss_pred EEECHHHHHHHHHHHhcC
Confidence 578888888888777654
No 127
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=59.58 E-value=8.2 Score=33.55 Aligned_cols=51 Identities=10% Similarity=-0.049 Sum_probs=34.5
Q ss_pred CCCcccCHHH-HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 240 RGRQTYTRYQ-TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 240 R~Rt~fT~~Q-l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
+.|...+.+. ++...+.|....|-. ....+||+++|++...|-..|.||-.
T Consensus 11 ~~~~~~~r~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~ 62 (237)
T 2hxo_A 11 RRQEPLSRERIVGAAVELLDTVGERG-LTFRALAERLATGPGAIYWHITGKAE 62 (237)
T ss_dssp -----CCHHHHHHHHHHHHHHTTTTT-CCHHHHHHHHTSCGGGGGGTCCCHHH
T ss_pred CCCCccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHHCCChHHHHHhcCCHHH
Confidence 3344455554 555566677777654 44778899999999999999999853
No 128
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=58.60 E-value=2 Score=40.03 Aligned_cols=7 Identities=71% Similarity=1.421 Sum_probs=0.0
Q ss_pred CCCCCCC
Q psy3281 151 HHHQHHH 157 (317)
Q Consensus 151 hhh~hHH 157 (317)
|||||||
T Consensus 1 ~~~~~~~ 7 (314)
T 3fwy_A 1 MHHHHHH 7 (314)
T ss_dssp -------
T ss_pred CCccccc
Confidence 3444433
No 129
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=58.54 E-value=7.3 Score=30.83 Aligned_cols=49 Identities=14% Similarity=-0.018 Sum_probs=37.4
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhh
Q psy3281 244 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 297 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~ 297 (317)
.++..+..+|...|... ....++|..+|+++..|+.++..-|.+.|+..
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 46777877777664322 34678999999999999999988887777643
No 130
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=58.02 E-value=5.3 Score=26.77 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=26.9
Q ss_pred ccC--HHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcc
Q psy3281 244 TYT--RYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQ 287 (317)
Q Consensus 244 ~fT--~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQ 287 (317)
.++ .++...+...+.. .+ ...+||+.||++...|..|+.
T Consensus 13 ~l~~~~~~~~~i~~l~~~-g~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAKM-GY----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHHT-TC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 455 5555555554432 22 466889999999999999985
No 131
>4fl4_A Glycoside hydrolase family 9; structural genomics, montreal-kingston bacterial structural initiative, BSGI, dockerin; 2.80A {Clostridium thermocellum} PDB: 3p0d_A
Probab=56.93 E-value=2.3 Score=33.25 Aligned_cols=11 Identities=9% Similarity=-0.025 Sum_probs=4.5
Q ss_pred CHHHHHHHHHH
Q psy3281 246 TRYQTLELEKE 256 (317)
Q Consensus 246 T~~Ql~~LE~~ 256 (317)
+...+..|.++
T Consensus 32 n~~D~~llk~y 42 (88)
T 4fl4_A 32 NSTDLTLLKRY 42 (88)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 34444444443
No 132
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=56.62 E-value=4.1 Score=34.82 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=34.7
Q ss_pred CCcccCHHH-HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhh
Q psy3281 241 GRQTYTRYQ-TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 292 (317)
Q Consensus 241 ~Rt~fT~~Q-l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK 292 (317)
.|...+.+. ++...+.|....|-. ....+||+++|++...|-.+|.||..-
T Consensus 21 ~r~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~~K~~L 72 (211)
T 3fiw_A 21 GMTKMNRETVITEALDLLDEVGLDG-VSTRRLAKRLGVEQPSLYWYFRTKRDL 72 (211)
T ss_dssp ---CCCHHHHHHHHHHHHHHHCGGG-CCHHHHHHHHTSCTHHHHTTCSSHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCHHHH
Confidence 334445443 555566677766543 347788999999999999999998543
No 133
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=56.53 E-value=6.3 Score=35.03 Aligned_cols=49 Identities=18% Similarity=0.034 Sum_probs=38.2
Q ss_pred cccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhh
Q psy3281 243 QTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 297 (317)
Q Consensus 243 t~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~ 297 (317)
..++..+..+|.-.+ .. ...++||+.||+++..|++...+-|.|.|..+
T Consensus 196 ~~L~~~erevl~L~~--~G----~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~ 244 (258)
T 3clo_A 196 NILSEREKEILRCIR--KG----LSSKEIAATLYISVNTVNRHRQNILEKLSVGN 244 (258)
T ss_dssp TSSCHHHHHHHHHHH--TT----CCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred ccCCHHHHHHHHHHH--cC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 468999988888754 22 24678999999999999999887777776543
No 134
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=56.17 E-value=4.6 Score=32.90 Aligned_cols=40 Identities=13% Similarity=0.023 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++.-.+.|....| . ....+||++.|++...|-.+|.||-
T Consensus 20 Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~ 59 (194)
T 2q24_A 20 ILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTRE 59 (194)
T ss_dssp HHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHH
T ss_pred HHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHH
Confidence 45556666888888 5 7889999999999999999999975
No 135
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=56.11 E-value=2.1 Score=35.36 Aligned_cols=40 Identities=13% Similarity=-0.005 Sum_probs=33.0
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++.-.+.|....| . ....+||++.|++...|-.+|.||.
T Consensus 18 Il~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~ 57 (196)
T 2qwt_A 18 VLEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQ 57 (196)
T ss_dssp HHHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 34555566888888 5 6789999999999999999999975
No 136
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=55.99 E-value=2.4 Score=39.48 Aligned_cols=6 Identities=67% Similarity=1.420 Sum_probs=0.0
Q ss_pred CCCCCC
Q psy3281 148 NNHHHH 153 (317)
Q Consensus 148 ~hHhhh 153 (317)
+|||||
T Consensus 2 ~~~~~~ 7 (268)
T 3k9f_C 2 GHHHHH 7 (268)
T ss_dssp ------
T ss_pred Cccccc
Confidence 344333
No 137
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C
Probab=55.98 E-value=2.4 Score=34.28 Aligned_cols=16 Identities=13% Similarity=0.009 Sum_probs=9.8
Q ss_pred CCCCCHHHHHHHHHHc
Q psy3281 260 NRYLTRRRRIEIAHAL 275 (317)
Q Consensus 260 n~yPs~~er~eLA~~L 275 (317)
+.+++..|...+...+
T Consensus 82 dG~I~~~El~~~l~~~ 97 (143)
T 3a4u_B 82 NNLLDGLELSTAITHV 97 (143)
T ss_dssp SSCEEHHHHHHTCC--
T ss_pred CCccCHHHHHHHHHHH
Confidence 3478888877765554
No 138
>2bu3_A ALR0975 protein; phytochelatin synthase, PCS, acyl-enzyme intermedia nostoc, glutathione metabolism, cysteine protease, transfer; HET: 3GC; 1.4A {Anabaena SP} SCOP: d.3.1.14 PDB: 2btw_A* 2btw_B
Probab=55.98 E-value=2.4 Score=39.17 Aligned_cols=10 Identities=60% Similarity=1.268 Sum_probs=0.0
Q ss_pred CcCCCCCCCC
Q psy3281 146 TLNNHHHHQH 155 (317)
Q Consensus 146 ~~~hHhhh~h 155 (317)
.|+|||||||
T Consensus 10 ~~~~~~~~~~ 19 (254)
T 2bu3_A 10 TMGHHHHHHH 19 (254)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 4666555544
No 139
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=55.75 E-value=6.9 Score=31.50 Aligned_cols=40 Identities=13% Similarity=0.031 Sum_probs=30.9
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
++...+.|....|-. ....+||++.|++...|-..|.||.
T Consensus 23 l~aa~~l~~~~G~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~ 62 (206)
T 3kz9_A 23 MEIALEVFARRGIGR-GGHADIAEIAQVSVATVFNYFPTRE 62 (206)
T ss_dssp HHHHHHHHHHSCCSS-CCHHHHHHHHTSCHHHHHHHCCSHH
T ss_pred HHHHHHHHHhcCccc-ccHHHHHHHhCCCHHHHHHHcCCHH
Confidence 444455577777654 3467889999999999999999974
No 140
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens}
Probab=55.30 E-value=2.5 Score=43.09 Aligned_cols=7 Identities=57% Similarity=1.274 Sum_probs=0.0
Q ss_pred CCCCCCC
Q psy3281 148 NNHHHHQ 154 (317)
Q Consensus 148 ~hHhhh~ 154 (317)
+||||||
T Consensus 2 ~~~~~~~ 8 (560)
T 3odm_A 2 GHHHHHH 8 (560)
T ss_dssp -------
T ss_pred Ccccccc
Confidence 4444333
No 141
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=55.03 E-value=3.3 Score=28.26 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=23.7
Q ss_pred HHHHHHHcCCCcccchhhcccchhhhhhh
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRRMKWKKE 296 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRRaK~KK~ 296 (317)
..++|..||+++..|+.++.+-+.|.+..
T Consensus 16 ~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 16 NHGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp SHHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 46899999999999999988766666543
No 142
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=54.91 E-value=7.2 Score=34.04 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=36.7
Q ss_pred CcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhh
Q psy3281 242 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 295 (317)
Q Consensus 242 Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK 295 (317)
...+|..++++|.-.++ . ..-++||+.||++++.|+.+..|-+.|..-
T Consensus 173 ~~~Lt~~e~~vl~~~~~--g----~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASK--G----KTASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp GGSCCHHHHHHHHHHHT--T----CCHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 34689999999976542 2 235789999999999999998877666553
No 143
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=53.94 E-value=11 Score=30.80 Aligned_cols=42 Identities=10% Similarity=0.066 Sum_probs=31.1
Q ss_pred cccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccc
Q psy3281 243 QTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNR 289 (317)
Q Consensus 243 t~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNR 289 (317)
..++.+....+...+... ....+||+.||++...|..|++.-
T Consensus 24 ~~~s~e~r~~ii~l~~~G-----~s~~~IA~~lgis~~TV~rwl~r~ 65 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-----VRPCDISRQLRVSHGCVSKILGRY 65 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-----CCHHHHHHHHTCCSHHHHHHHCCS
T ss_pred CCCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 467888776666666432 235678999999999999999753
No 144
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=53.71 E-value=2.9 Score=34.21 Aligned_cols=39 Identities=15% Similarity=0.046 Sum_probs=32.8
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
++...+.|....| . ....+||++.|+++..|-..|.||-
T Consensus 22 l~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~ 60 (199)
T 2rek_A 22 IEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRW 60 (199)
T ss_dssp HHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHH
Confidence 5555666888888 5 5789999999999999999999974
No 145
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=53.70 E-value=2.7 Score=40.10 Aligned_cols=13 Identities=15% Similarity=0.179 Sum_probs=7.3
Q ss_pred cCHHHHHHHHHHh
Q psy3281 245 YTRYQTLELEKEF 257 (317)
Q Consensus 245 fT~~Ql~~LE~~F 257 (317)
++.+.++.....|
T Consensus 116 ~t~e~i~~~l~~f 128 (327)
T 1k8w_A 116 FSAEQLAAALDTF 128 (327)
T ss_dssp CCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHhc
Confidence 5566655555555
No 146
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=53.20 E-value=2.8 Score=40.39 Aligned_cols=8 Identities=63% Similarity=1.365 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q psy3281 148 NNHHHHQH 155 (317)
Q Consensus 148 ~hHhhh~h 155 (317)
+|||||||
T Consensus 2 ~~~~~~~~ 9 (371)
T 3tla_A 2 GHHHHHHH 9 (371)
T ss_dssp --------
T ss_pred Cccccccc
Confidence 44444433
No 147
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=53.19 E-value=4.5 Score=32.56 Aligned_cols=38 Identities=11% Similarity=0.016 Sum_probs=29.7
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
++.-.+.|... ......+||++.|++...|-.+|.||.
T Consensus 20 l~aA~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 57 (190)
T 2v57_A 20 LDAAMLVLADH---PTAALGDIAAAAGVGRSTVHRYYPERT 57 (190)
T ss_dssp HHHHHHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 34444456555 666788999999999999999999985
No 148
>4g2c_A DYP2; DYE peroxidase, oxidoreductase; HET: HEM; 2.25A {Amycolatopsis SP}
Probab=53.17 E-value=2.8 Score=42.09 Aligned_cols=14 Identities=50% Similarity=1.092 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCC
Q psy3281 147 LNNHHHHQHHHMNH 160 (317)
Q Consensus 147 ~~hHhhh~hHH~~H 160 (317)
|+||||||||||..
T Consensus 1 ~~~~~~~~~~~~~~ 14 (493)
T 4g2c_A 1 MGHHHHHHHHHHGA 14 (493)
T ss_dssp --------------
T ss_pred Cccccccccccccc
Confidence 34554444444333
No 149
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=53.02 E-value=2.9 Score=40.88 Aligned_cols=18 Identities=17% Similarity=0.091 Sum_probs=12.4
Q ss_pred CCCCcccCHHHHHHHHHH
Q psy3281 239 KRGRQTYTRYQTLELEKE 256 (317)
Q Consensus 239 RR~Rt~fT~~Ql~~LE~~ 256 (317)
.-+|..+|++.+..|.+.
T Consensus 36 ~E~RValtP~~V~~L~~~ 53 (394)
T 2qrj_A 36 LEARAALTPTTVKKLIAK 53 (394)
T ss_dssp TCCCCSSCHHHHHHHHHT
T ss_pred CCceeccCHHHHHHHHhC
Confidence 345677888888887644
No 150
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=52.76 E-value=13 Score=26.45 Aligned_cols=41 Identities=7% Similarity=0.053 Sum_probs=32.7
Q ss_pred cccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 243 QTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 243 t~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
..++.+.+..|.+.... ..++||+.+|++...|..|-.+++
T Consensus 9 ~~~~g~~lr~~R~~~gl-------tq~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSL-------TQKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTTC-------CHHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcCC-------CHHHHHHHhCcCHHHHHHHHcCCC
Confidence 46888888888765432 257899999999999999998765
No 151
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=52.74 E-value=19 Score=29.01 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=32.7
Q ss_pred CCCcccCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHcCCCcc
Q psy3281 240 RGRQTYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCLTER 280 (317)
Q Consensus 240 R~Rt~fT~~Ql~~LE~~F~~-----n~yPs~~er~eLA~~LgLse~ 280 (317)
.+|..+|.+|+..|+.+|.. +.+++..+...+.+.||+...
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 34567999999999999963 568999999998888886553
No 152
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=52.72 E-value=2.9 Score=39.07 Aligned_cols=6 Identities=67% Similarity=1.420 Sum_probs=0.0
Q ss_pred CCCCCC
Q psy3281 148 NNHHHH 153 (317)
Q Consensus 148 ~hHhhh 153 (317)
+|||||
T Consensus 2 ~~~~~~ 7 (406)
T 1ydx_A 2 GHHHHH 7 (406)
T ss_dssp ------
T ss_pred Cccccc
Confidence 444433
No 153
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=52.51 E-value=10 Score=28.89 Aligned_cols=47 Identities=11% Similarity=0.222 Sum_probs=31.0
Q ss_pred CcccCHHHHHHHHHHh-hhC-CCCCH-HHHHHHHHHcCCCcccchhhccc
Q psy3281 242 RQTYTRYQTLELEKEF-HFN-RYLTR-RRRIEIAHALCLTERQIKIWFQN 288 (317)
Q Consensus 242 Rt~fT~~Ql~~LE~~F-~~n-~yPs~-~er~eLA~~LgLse~qVkiWFQN 288 (317)
+.+|+.++.......+ +.. .+.+. ....+||..+||+...|..|...
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 3468888765444433 321 12222 45678999999999999999753
No 154
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=52.25 E-value=3 Score=41.66 Aligned_cols=21 Identities=14% Similarity=-0.021 Sum_probs=11.9
Q ss_pred CHHHHHHHHHHcCCCcccchh
Q psy3281 264 TRRRRIEIAHALCLTERQIKI 284 (317)
Q Consensus 264 s~~er~eLA~~LgLse~qVki 284 (317)
+.....+-|+-.||.+..+..
T Consensus 124 ~~~~~~~E~~f~~i~~~~~~~ 144 (514)
T 2r9r_B 124 PLDIFSEEIRFYELGEEAMEM 144 (514)
T ss_dssp CHHHHHHHHHHTTCCHHHHHH
T ss_pred cHHHHHHHHHhcCCCHHHHhh
Confidence 333344446667787766553
No 155
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=52.07 E-value=3 Score=39.76 Aligned_cols=10 Identities=10% Similarity=0.225 Sum_probs=4.1
Q ss_pred HHHHHcCCCc
Q psy3281 270 EIAHALCLTE 279 (317)
Q Consensus 270 eLA~~LgLse 279 (317)
+..+..|++.
T Consensus 221 eygkdygvsq 230 (564)
T 4faj_A 221 EYGKDYGVSQ 230 (564)
T ss_dssp HHGGGTTSST
T ss_pred HhccccCccc
Confidence 3344444433
No 156
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=51.56 E-value=8.4 Score=32.45 Aligned_cols=40 Identities=10% Similarity=0.014 Sum_probs=31.0
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
++...+.|....|-. ....+||++.|++...|-..|.+|-
T Consensus 36 l~aA~~lf~~~G~~~-~t~~~IA~~Agvs~~t~Y~~F~sKe 75 (230)
T 2iai_A 36 LSVAVQVFIERGYDG-TSMEHLSKAAGISKSSIYHHVTGKE 75 (230)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHTTTCSSHH
T ss_pred HHHHHHHHHHcCccc-cCHHHHHHHHCCChhHHHHhCCCHH
Confidence 555566677667644 3477889999999999999999884
No 157
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=51.04 E-value=3.2 Score=40.03 Aligned_cols=6 Identities=67% Similarity=1.420 Sum_probs=0.0
Q ss_pred CCCCCC
Q psy3281 148 NNHHHH 153 (317)
Q Consensus 148 ~hHhhh 153 (317)
+|||||
T Consensus 2 ~~~~~~ 7 (357)
T 2apo_A 2 GHHHHH 7 (357)
T ss_dssp ------
T ss_pred Cccccc
Confidence 343333
No 158
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=50.86 E-value=13 Score=28.97 Aligned_cols=42 Identities=7% Similarity=0.180 Sum_probs=30.9
Q ss_pred cccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccc
Q psy3281 243 QTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNR 289 (317)
Q Consensus 243 t~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNR 289 (317)
..++.++...+...+.. . ....+||+.||++...|..|+..-
T Consensus 5 ~~~s~~~r~~i~~~~~~-G----~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMKLL-N----VSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHHHT-T----CCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHHHc-C----CCHHHHHHHHCcCHHHHHHHHHcc
Confidence 45777777666666643 2 235678999999999999999643
No 159
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=50.31 E-value=6.7 Score=31.98 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=32.3
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
-++...+.|....|-. ....+||++.|++...|-.+|.+|-.
T Consensus 36 Il~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~ 77 (218)
T 3dcf_A 36 IIKVATELFREKGYYA-TSLDDIADRIGFTKPAIYYYFKSKED 77 (218)
T ss_dssp HHHHHHHHHHHTCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHcCccc-CcHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 3555566677777653 44778899999999999999999853
No 160
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=50.15 E-value=13 Score=29.34 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=34.2
Q ss_pred ccccCCCCcccCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHcCCC--cccchhhc
Q psy3281 235 QFERKRGRQTYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCLT--ERQIKIWF 286 (317)
Q Consensus 235 ~~krRR~Rt~fT~~Ql~~LE~~F~~-----n~yPs~~er~eLA~~LgLs--e~qVkiWF 286 (317)
.....+.+..++.+++..|+..|.. +.+++..|...+...+|+. ...|...|
T Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 70 (169)
T 3qrx_A 12 RRDQKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMI 70 (169)
T ss_dssp --------CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCCCCHHHHHHHH
T ss_pred hhcccccCCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3344566788999999999999963 4589999998888888764 34454444
No 161
>3t21_A Endo-type membrane-bound lytic murein transglycos; goose type lysozyme-like structure, lytic transglycosylase,; HET: NAG; 1.90A {Escherichia coli} PDB: 3t1z_A* 4hjy_A* 4hjz_A* 3t36_A 3t4i_A* 4hjv_A* 2y8p_A
Probab=50.02 E-value=3.4 Score=36.47 Aligned_cols=27 Identities=7% Similarity=-0.090 Sum_probs=16.8
Q ss_pred HHHHHHH-HHHcCCCcccchhhcccchh
Q psy3281 265 RRRRIEI-AHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 265 ~~er~eL-A~~LgLse~qVkiWFQNRRa 291 (317)
..++..| ....+..+..|+.||...|.
T Consensus 138 ~~~~~~lalaAYNaG~g~V~r~~~~~r~ 165 (206)
T 3t21_A 138 PKVLQYALVVSYANGAGALLRTFSSDRK 165 (206)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHTTCCC-C
T ss_pred cHHHHHHHHHHHhChHHHHHHHHhccch
Confidence 3444333 45677778889999865443
No 162
>4e4j_A Arginine deiminase; L-arginine, L-citrulline, NH3, hydrolase; 2.30A {Mycoplasma penetrans}
Probab=49.90 E-value=3.4 Score=40.23 Aligned_cols=7 Identities=14% Similarity=0.529 Sum_probs=2.9
Q ss_pred ccchhhc
Q psy3281 280 RQIKIWF 286 (317)
Q Consensus 280 ~qVkiWF 286 (317)
..++.||
T Consensus 113 ~~~r~~~ 119 (433)
T 4e4j_A 113 KEVRNSF 119 (433)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344444
No 163
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A*
Probab=49.89 E-value=3.4 Score=42.13 Aligned_cols=6 Identities=67% Similarity=1.420 Sum_probs=0.0
Q ss_pred CCCCCC
Q psy3281 148 NNHHHH 153 (317)
Q Consensus 148 ~hHhhh 153 (317)
+|||||
T Consensus 2 ~~~~~~ 7 (591)
T 3b0g_A 2 GHHHHH 7 (591)
T ss_dssp ------
T ss_pred Cccccc
Confidence 343333
No 164
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=49.79 E-value=9.7 Score=29.76 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=38.1
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhh
Q psy3281 244 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 297 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~ 297 (317)
.++..+..+|...|-.+.. .....++||..+|++...|+.+...-+.|.|+..
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~ 71 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 71 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777643211 1234678999999999999999887777776644
No 165
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=49.75 E-value=14 Score=28.86 Aligned_cols=45 Identities=13% Similarity=0.097 Sum_probs=30.6
Q ss_pred cccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcC--CCcccchhhcccchh
Q psy3281 243 QTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC--LTERQIKIWFQNRRM 291 (317)
Q Consensus 243 t~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~Lg--Lse~qVkiWFQNRRa 291 (317)
..++.+++..|... ..++..+. .+|+.+|| ++...|..|+.....
T Consensus 59 ~~l~~~~~~~i~~~-~~~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 59 KALSVRDERNVIRA-ASNSCKTA---RDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp CSSCHHHHHHHHHH-HHHCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred CcCCHHHHHHHHHH-HhCCCCCH---HHHHHHHCCCccHHHHHHHHHHCCC
Confidence 35788887777666 44444444 45777788 788999999965544
No 166
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=49.51 E-value=4.6 Score=34.19 Aligned_cols=41 Identities=15% Similarity=-0.031 Sum_probs=31.7
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
++...+.|.+..|- .....+||++.|++...|-.+|.||-.
T Consensus 19 l~AA~~l~~~~G~~-~~tv~~IA~~agvs~~t~Y~~F~sK~~ 59 (231)
T 2qib_A 19 IGVALDLFSRRSPD-EVSIDEIASAAGISRPLVYHYFPGKLS 59 (231)
T ss_dssp HHHHHHHHHHSCGG-GCCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCch-hcCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 45555667777763 344778899999999999999999853
No 167
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=49.30 E-value=7.5 Score=31.95 Aligned_cols=41 Identities=15% Similarity=0.068 Sum_probs=31.6
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
++...+.|....|-. ....+||++.|++...|-.+|.||-.
T Consensus 36 l~aA~~l~~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sK~~ 76 (222)
T 3bru_A 36 IRAGLEHLTEKGYSS-VGVDEILKAARVPKGSFYHYFRNKAD 76 (222)
T ss_dssp HHHHHHHHHHSCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCCCc-CcHHHHHHHhCCCcchhhhhCCCHHH
Confidence 455555677777654 44778899999999999999999853
No 168
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=49.20 E-value=3.6 Score=31.81 Aligned_cols=18 Identities=6% Similarity=0.064 Sum_probs=10.0
Q ss_pred HHHHHHHcCCCcccchhh
Q psy3281 268 RIEIAHALCLTERQIKIW 285 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiW 285 (317)
..+|.++|++..+.|.+-
T Consensus 39 v~dLL~~L~~~~~~vaVa 56 (87)
T 1tyg_B 39 IQDLLASYQLENKIVIVE 56 (87)
T ss_dssp HHHHHHHTTCTTSCCEEE
T ss_pred HHHHHHHhCCCCCCEEEE
Confidence 344555566666666543
No 169
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=48.93 E-value=0.34 Score=41.02 Aligned_cols=30 Identities=7% Similarity=-0.048 Sum_probs=21.5
Q ss_pred cccCCCCcccCHHHHHHHHHHhhhCCCCCH
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHFNRYLTR 265 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~ 265 (317)
.+.||.||.|+..|+++|+..|+.+++++.
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 355789999999999999999999998864
No 170
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=48.56 E-value=11 Score=32.69 Aligned_cols=48 Identities=8% Similarity=-0.007 Sum_probs=36.4
Q ss_pred CcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhh
Q psy3281 242 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 295 (317)
Q Consensus 242 Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK 295 (317)
...+|..++++|.-.++ ....++||+.||++++.|+....|-|.|..-
T Consensus 171 ~~~Lt~~e~~vl~~~~~------g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 218 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAV------GKTMEEIADVEGVKYNSVRVKLREAMKRFDV 218 (234)
T ss_dssp CCCCCHHHHHHHHHHTT------TCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 45689999999876432 2346789999999999999998876666543
No 171
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=48.12 E-value=17 Score=25.71 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=33.8
Q ss_pred CcccCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHcCC--Cccc---chhhcc
Q psy3281 242 RQTYTRYQTLELEKEFH-----FNRYLTRRRRIEIAHALCL--TERQ---IKIWFQ 287 (317)
Q Consensus 242 Rt~fT~~Ql~~LE~~F~-----~n~yPs~~er~eLA~~LgL--se~q---VkiWFQ 287 (317)
...++.+++..|+..|. .+.+++..+...+...+|+ +... |..+|.
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 60 (86)
T 1j7q_A 5 ARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEAR 60 (86)
T ss_dssp CCCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34567788888888885 3568999999998888885 4455 666663
No 172
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=47.84 E-value=4.9 Score=37.18 Aligned_cols=8 Identities=63% Similarity=1.128 Sum_probs=1.3
Q ss_pred CcCCCCCC
Q psy3281 146 TLNNHHHH 153 (317)
Q Consensus 146 ~~~hHhhh 153 (317)
+..|||||
T Consensus 294 t~~~~~~~ 301 (306)
T 3j1z_P 294 TTQHHHHH 301 (306)
T ss_dssp CCC-----
T ss_pred Cccccccc
Confidence 44444443
No 173
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=47.49 E-value=9.5 Score=34.09 Aligned_cols=50 Identities=12% Similarity=-0.021 Sum_probs=36.5
Q ss_pred ccCHHH-HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhh
Q psy3281 244 TYTRYQ-TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 294 (317)
Q Consensus 244 ~fT~~Q-l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~K 294 (317)
.++.+. ++.-.+.|....|-. ....+||+++|++...|-..|.||..-..
T Consensus 26 ~~tr~~Il~AA~~L~~e~G~~~-~Smr~IA~~aGVs~~tlY~hF~~K~~Ll~ 76 (267)
T 2y2z_A 26 TLSRDQIVRAAVKVADTEGVEA-ASMRRVAAELGAGTMSLYYYVPTKEDLVE 76 (267)
T ss_dssp EECHHHHHHHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHTTCCSHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 556554 455566677777644 34678899999999999999999864443
No 174
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=47.36 E-value=8.6 Score=31.16 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=31.8
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++...+.|....|-.. ...+||++.|++...|-..|.||.
T Consensus 21 Il~aa~~lf~~~G~~~~-t~~~Ia~~agvs~~t~Y~~F~sK~ 61 (213)
T 2qtq_A 21 LLQTASNIMREGDVVDI-SLSELSLRSGLNSALVKYYFGNKA 61 (213)
T ss_dssp HHHHHHHHHHHHTSSCC-CHHHHHHHHCCCHHHHHHHHSSHH
T ss_pred HHHHHHHHHHHcCcccc-cHHHHHHHhCCChhhHhHhcCCHH
Confidence 35555666777776543 367889999999999999999985
No 175
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=47.33 E-value=6.3 Score=33.37 Aligned_cols=40 Identities=8% Similarity=0.085 Sum_probs=30.5
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
++...+.|.+..|-. ....+||++.|++...|-..|.||.
T Consensus 50 l~aA~~lf~e~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK~ 89 (236)
T 3q0w_A 50 LATAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSKE 89 (236)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCcHHHHHHHCCCHH
Confidence 444455577777643 3467889999999999999999985
No 176
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=47.26 E-value=11 Score=32.92 Aligned_cols=52 Identities=8% Similarity=-0.029 Sum_probs=36.9
Q ss_pred CcccCHHH-HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhh
Q psy3281 242 RQTYTRYQ-TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 294 (317)
Q Consensus 242 Rt~fT~~Q-l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~K 294 (317)
|...+.+. ++.-.+.|....|-. ....+||+++|++...|-..|.||..-..
T Consensus 16 r~~~tr~~Il~AA~~l~~e~G~~~-~S~~~IA~~aGvs~~tlY~hF~sK~~Ll~ 68 (243)
T 2g7l_A 16 KPALSRRWIVDTAVALMRAEGLEK-VTMRRLAQELDTGPASLYVYVANTAELHA 68 (243)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCSSS-CCHHHHHHHTTSCHHHHTTTCCSHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHhcCchh-cCHHHHHHHHCCChhHHHHHcCCHHHHHH
Confidence 34455554 555566677777644 44778899999999999999999864433
No 177
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=46.41 E-value=3.2 Score=34.08 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=32.0
Q ss_pred cCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhh
Q psy3281 245 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 296 (317)
Q Consensus 245 fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~ 296 (317)
++..+..+|...|-.. ....+||+.||+++..|+.|...-|.|.|+.
T Consensus 136 L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 136 LPEAQRALIERAFFGD-----LTHRELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp SCHHHHHHHHHHHHSC-----CSSCCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 4555555555543222 2234678889999999999998888777764
No 178
>1qwz_A NPQTN specific sortase B; beta barrel, transpeptidase, hydrolase; 1.75A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1qxa_A 1ng5_A 1qx6_A*
Probab=45.21 E-value=7.5 Score=35.08 Aligned_cols=20 Identities=0% Similarity=0.062 Sum_probs=10.3
Q ss_pred CcccCHHHHHHHHHHhhhCC
Q psy3281 242 RQTYTRYQTLELEKEFHFNR 261 (317)
Q Consensus 242 Rt~fT~~Ql~~LE~~F~~n~ 261 (317)
.+.|+.-....-+.+|+..+
T Consensus 126 g~MF~~L~~~~~~df~~~h~ 145 (235)
T 1qwz_A 126 NTMFDVLEDYLKQSFYEKHK 145 (235)
T ss_dssp SCGGGGGGGGGSHHHHHHCC
T ss_pred CchhhhHHHhhcchhhhcCC
Confidence 45666644333344566555
No 179
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=45.18 E-value=14 Score=27.66 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=13.9
Q ss_pred hhHHhhCCCCCCCCCCC-CCCCCCcCCCCCC
Q psy3281 124 LQAAVGNGIIPGPESPN-DLVDPTLNNHHHH 153 (317)
Q Consensus 124 lqaa~~~g~~~~~~sp~-pl~~~~~~hHhhh 153 (317)
|.-||..|.+.. .|+ .+..+.+.|||||
T Consensus 83 ~~~Av~~g~i~~--NP~~~v~~~~~~~~~~~ 111 (112)
T 3lys_A 83 IQCLIEEGRLQK--DFTTRAVVKGLEHHHHH 111 (112)
T ss_dssp HHHHHHTTSCSS--CTTSSTTCCCCCC----
T ss_pred HHHHHHCCCccc--CccccceeccccccccC
Confidence 456788998843 333 3333566665443
No 180
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=44.99 E-value=12 Score=28.29 Aligned_cols=40 Identities=10% Similarity=0.089 Sum_probs=29.3
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhccc
Q psy3281 244 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 288 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQN 288 (317)
.++.+....+...+. ..+ ...+||+.||++...|..|+..
T Consensus 17 ~~s~~~r~~i~~~~~-~g~----s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAA-DGI----RPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp CCCHHHHHHHHHHHH-TTC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 577777666665564 322 3467899999999999999864
No 181
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=44.84 E-value=19 Score=29.33 Aligned_cols=47 Identities=6% Similarity=-0.086 Sum_probs=31.6
Q ss_pred CcccCHHHHHHHHHHhhhCCCCCHHHHHH-HHHH------cCCCcccchhhccc
Q psy3281 242 RQTYTRYQTLELEKEFHFNRYLTRRRRIE-IAHA------LCLTERQIKIWFQN 288 (317)
Q Consensus 242 Rt~fT~~Ql~~LE~~F~~n~yPs~~er~e-LA~~------LgLse~qVkiWFQN 288 (317)
+..++.+....|.+.+..++..+..++.+ |.++ +.++...|..|+..
T Consensus 81 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~ 134 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRT 134 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHH
Confidence 44577778888888887777677665544 3222 24788889888854
No 182
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=44.67 E-value=7.6 Score=33.29 Aligned_cols=40 Identities=8% Similarity=0.085 Sum_probs=30.3
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
++...+.|....|-. ....+||++.|++...|-.+|.||.
T Consensus 49 l~AA~~lf~~~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK~ 88 (255)
T 3g1o_A 49 LATAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSKE 88 (255)
T ss_dssp HHHHHHHHTTSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcCCcc-CcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 444555577766543 3467889999999999999999985
No 183
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=44.55 E-value=16 Score=25.61 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=34.6
Q ss_pred CcccCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHcC--CCcccchhhcc
Q psy3281 242 RQTYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALC--LTERQIKIWFQ 287 (317)
Q Consensus 242 Rt~fT~~Ql~~LE~~F~~-----n~yPs~~er~eLA~~Lg--Lse~qVkiWFQ 287 (317)
...++.+++..|+..|.. +.+++..+...+...+| ++...|..+|.
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 5 KKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp CCSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 346788999999999863 45889999888888887 45556666663
No 184
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=44.48 E-value=5.9 Score=31.96 Aligned_cols=41 Identities=5% Similarity=-0.036 Sum_probs=30.2
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
++.-.+.|....|-. ....+||++.|++...|-..|.+|-.
T Consensus 23 l~aa~~lf~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~ 63 (208)
T 3cwr_A 23 VGAAQRLLSSGGAAA-MTMEGVASEAGIAKKTLYRFASGRAD 63 (208)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCHHh-ccHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 444445566666543 34678899999999999999999753
No 185
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=44.05 E-value=20 Score=27.08 Aligned_cols=46 Identities=9% Similarity=-0.145 Sum_probs=29.5
Q ss_pred cccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCC-------Ccccchhhccc
Q psy3281 243 QTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL-------TERQIKIWFQN 288 (317)
Q Consensus 243 t~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgL-------se~qVkiWFQN 288 (317)
..++.+....|++.+..++..+..++.....+.|+ +...|..|+..
T Consensus 74 ~~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 74 RIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp CSSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred CcCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 46777777888887777776676655443323274 77888888753
No 186
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=44.01 E-value=6.3 Score=30.85 Aligned_cols=45 Identities=9% Similarity=0.050 Sum_probs=33.2
Q ss_pred cccCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHcCCCcccchhhcc
Q psy3281 243 QTYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCLTERQIKIWFQ 287 (317)
Q Consensus 243 t~fT~~Ql~~LE~~F~~-----n~yPs~~er~eLA~~LgLse~qVkiWFQ 287 (317)
..++.+++..|++.|.. +.+++..|...+...+|+++..|..+|.
T Consensus 14 ~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~~ 63 (110)
T 1iq3_A 14 WRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWE 63 (110)
T ss_dssp CCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34566667777777753 4578888888887888898888887764
No 187
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=43.98 E-value=4.8 Score=35.13 Aligned_cols=13 Identities=8% Similarity=-0.084 Sum_probs=6.5
Q ss_pred cCHHHHHHHHHHh
Q psy3281 245 YTRYQTLELEKEF 257 (317)
Q Consensus 245 fT~~Ql~~LE~~F 257 (317)
++.+-+..|.+.|
T Consensus 119 ~~~~~i~~l~~~~ 131 (236)
T 2px7_A 119 VSRGLVARVLEAA 131 (236)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4555555554444
No 188
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=43.54 E-value=7.3 Score=32.14 Aligned_cols=40 Identities=8% Similarity=0.080 Sum_probs=7.8
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
++...+.|....|-. ....+||++.|++...|-.+|.+|-
T Consensus 36 l~aa~~l~~~~G~~~-~ti~~IA~~agvs~~t~Y~~F~sK~ 75 (212)
T 2np3_A 36 LTAARVCFAERGFDA-TSLRRIAETAGVDQSLVHHFYGTKE 75 (212)
T ss_dssp HHHHHHHC----------------------------CCC-C
T ss_pred HHHHHHHHHHcCccc-ccHHHHHHHcCCCHHHHHHHhCCHH
Confidence 455555666666544 4477889999999999999999884
No 189
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=43.40 E-value=23 Score=27.48 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=35.7
Q ss_pred CCCcccCHHHHHHHHHHhhh------CCCCCHHHHHHHHHHcC--CCcccchhhcc
Q psy3281 240 RGRQTYTRYQTLELEKEFHF------NRYLTRRRRIEIAHALC--LTERQIKIWFQ 287 (317)
Q Consensus 240 R~Rt~fT~~Ql~~LE~~F~~------n~yPs~~er~eLA~~Lg--Lse~qVkiWFQ 287 (317)
+....++.+++..|+..|.. +.+++..+...+...+| ++...|..+|.
T Consensus 7 ~~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 62 (161)
T 1dtl_A 7 AAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 62 (161)
T ss_dssp TGGGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34456889999999999852 56889999988888887 45556666663
No 190
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=43.25 E-value=11 Score=30.18 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=26.4
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
-+..-.+.|....|-. ....+||++.|++...|-..|.||..
T Consensus 17 Il~aA~~lf~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~ 58 (199)
T 3on2_A 17 LLARAESTLEKDGVDG-LSLRQLAREAGVSHAAPSKHFRDRQA 58 (199)
T ss_dssp HHHHHHHHHHHHCGGG-CCHHHHHHHTC-----CCCSSSSHHH
T ss_pred HHHHHHHHHHhcChhh-hhHHHHHHHhCCChHHHHHHhCCHHH
Confidence 3455555677666543 34678999999999999999999753
No 191
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=43.08 E-value=18 Score=32.42 Aligned_cols=49 Identities=18% Similarity=0.138 Sum_probs=38.1
Q ss_pred CcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhh
Q psy3281 242 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 296 (317)
Q Consensus 242 Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~ 296 (317)
...+|..++++|.-..+ ....++||+.||++++.|+....|-+.|..-.
T Consensus 195 ~~~Lt~re~~vl~~~~~------G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~~ 243 (265)
T 3qp6_A 195 NMPLSQREYDIFHWMSR------GKTNWEIATILNISERTVKFHVANVIRKLNAN 243 (265)
T ss_dssp CCCCCHHHHHHHHHHHT------TCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred cCCCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 35789999999987642 23467899999999999999988877765543
No 192
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=43.04 E-value=5.1 Score=33.89 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhh
Q psy3281 245 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 293 (317)
Q Consensus 245 fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~ 293 (317)
++..+..+|...| .......+||+.||++...|+.++..-|.|.
T Consensus 199 L~~~~r~vl~l~~-----~~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 242 (243)
T 1l0o_C 199 LDERERLIVYLRY-----YKDQTQSEVASRLGISQVQMSRLEKKILQHI 242 (243)
T ss_dssp -------------------------------------------------
T ss_pred CCHHHHHHHHHHH-----hcCCCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 4555555555433 3445678899999999999999987666554
No 193
>3ako_A Venus; fluorescent protein, GFP; HET: CR2 PE8; 2.10A {Plant transformation vector psiteii-4corganism_taxid}
Probab=42.78 E-value=5.1 Score=34.96 Aligned_cols=6 Identities=33% Similarity=0.584 Sum_probs=3.1
Q ss_pred CCCCCH
Q psy3281 260 NRYLTR 265 (317)
Q Consensus 260 n~yPs~ 265 (317)
.+||..
T Consensus 91 ~kYP~~ 96 (173)
T 3ako_A 91 ARYPDH 96 (173)
T ss_dssp SBCCGG
T ss_pred ccCCCC
Confidence 446554
No 194
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=42.74 E-value=7.5 Score=26.18 Aligned_cols=23 Identities=22% Similarity=0.197 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCcccchhhcccch
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRR 290 (317)
..+||+.+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999998765
No 195
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=42.71 E-value=36 Score=27.09 Aligned_cols=48 Identities=6% Similarity=-0.084 Sum_probs=32.6
Q ss_pred CcccCHHHHHHHHHHhhhCCCCCHHHHHH-HHHHc----C--CCcccchhhcccc
Q psy3281 242 RQTYTRYQTLELEKEFHFNRYLTRRRRIE-IAHAL----C--LTERQIKIWFQNR 289 (317)
Q Consensus 242 Rt~fT~~Ql~~LE~~F~~n~yPs~~er~e-LA~~L----g--Lse~qVkiWFQNR 289 (317)
+..++.+....|...+..++..+..++.+ |..+. | ++...|..|+...
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 45678888888888888777666655433 22221 5 7888899998643
No 196
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=42.49 E-value=8 Score=31.67 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=30.9
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
++...+.|....|-. ....+||++.|++...|-..|.||.
T Consensus 23 l~aA~~l~~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~ 62 (218)
T 3gzi_A 23 ILAARNLFIERPYAQ-VSIREIASLAGTDPGLIRYYFGSKE 62 (218)
T ss_dssp HHHHHHHHHTSCCSC-CCHHHHHHHHTSCTHHHHHHHSSHH
T ss_pred HHHHHHHHHHCCCCc-CCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 444455577777654 3467889999999999999999985
No 197
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=42.21 E-value=19 Score=29.23 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=32.7
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++...+.|....|-. ....+||++.|+++..|-..|.||-
T Consensus 19 Il~aA~~lf~~~G~~~-~s~~~Ia~~agvs~~t~Y~yF~sKe 59 (203)
T 3ccy_A 19 IIERAAAMFARQGYSE-TSIGDIARACECSKSRLYHYFDSKE 59 (203)
T ss_dssp HHHHHHHHHHHTCTTT-SCHHHHHHHTTCCGGGGTTTCSCHH
T ss_pred HHHHHHHHHHHcCccc-CCHHHHHHHhCCCcCeeeeeeCCHH
Confidence 3555666788888755 3477889999999999999999984
No 198
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=41.43 E-value=16 Score=31.88 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=34.2
Q ss_pred CcccCHHH-HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 242 RQTYTRYQ-TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 242 Rt~fT~~Q-l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
|...+.+. ++.-.+.|....|-. ....+||+++|++...|-.+|.||..
T Consensus 26 ~~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~ 75 (241)
T 2hxi_A 26 RRRWSTEQILDAAAELLLAGDAET-FSVRKLAASLGTDSSSLYRHFRNKTE 75 (241)
T ss_dssp --CCCHHHHHHHHHHHHSSSSCCC-CCHHHHHHHTTSCHHHHHHHTSSHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCcCHHHHHHHcCCHHH
Confidence 33445543 455556677666644 44678899999999999999999853
No 199
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=41.30 E-value=13 Score=31.42 Aligned_cols=46 Identities=17% Similarity=0.066 Sum_probs=35.3
Q ss_pred cccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhh
Q psy3281 243 QTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 294 (317)
Q Consensus 243 t~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~K 294 (317)
..+|..+.++|+-..+- ..+++||+.++++++.|++...|=|.|..
T Consensus 148 ~~LT~rE~~vL~~l~~g------~s~~eIa~~l~is~~TV~~hi~~l~~KL~ 193 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEG------LTNKQIADRMFLAEKTVKNYVSRLLAKLG 193 (225)
T ss_dssp TTSCHHHHHHHHHHHTT------CCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHCC------CCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 46888888888765432 24678999999999999998877666654
No 200
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=41.25 E-value=21 Score=28.65 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=31.9
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-+....+.|....|-. ....+||++.|++...|-..|.||-
T Consensus 21 Il~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~ 61 (211)
T 3him_A 21 IRAAAIEVFAAKGYGA-TTTREIAASLDMSPGAVYPHYKTKE 61 (211)
T ss_dssp HHHHHHHHHHHHCSTT-CCHHHHHHHTTCCTTSSTTTCSSHH
T ss_pred HHHHHHHHHHHcCCCc-CCHHHHHHHhCCCcChhhhcCCCHH
Confidence 4555556677777653 4477889999999999999999985
No 201
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=41.16 E-value=7.4 Score=27.93 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.8
Q ss_pred HHHHHHHcCCCcccchhhcccch
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRR 290 (317)
..+||+.+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 57899999999999999998776
No 202
>3t21_A Endo-type membrane-bound lytic murein transglycos; goose type lysozyme-like structure, lytic transglycosylase,; HET: NAG; 1.90A {Escherichia coli} PDB: 3t1z_A* 4hjy_A* 4hjz_A* 3t36_A 3t4i_A* 4hjv_A* 2y8p_A
Probab=41.03 E-value=5.7 Score=35.01 Aligned_cols=6 Identities=0% Similarity=-0.114 Sum_probs=2.6
Q ss_pred HHHcCC
Q psy3281 272 AHALCL 277 (317)
Q Consensus 272 A~~LgL 277 (317)
++.+|+
T Consensus 96 ~~~~G~ 101 (206)
T 3t21_A 96 YRRMGW 101 (206)
T ss_dssp HHHHTC
T ss_pred HHHcCC
Confidence 344444
No 203
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=40.71 E-value=8.4 Score=26.07 Aligned_cols=24 Identities=8% Similarity=0.263 Sum_probs=20.8
Q ss_pred HHHHHHHcCCCcccchhhcccchh
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRRa 291 (317)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 567999999999999999987653
No 204
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=40.48 E-value=29 Score=26.75 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=36.1
Q ss_pred CCCCcccCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHcCC--Ccccchhhc
Q psy3281 239 KRGRQTYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCL--TERQIKIWF 286 (317)
Q Consensus 239 RR~Rt~fT~~Ql~~LE~~F~~-----n~yPs~~er~eLA~~LgL--se~qVkiWF 286 (317)
...+..++.+++..|+..|.. +.+++..+...+...+|+ +...|+..|
T Consensus 11 ~~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~ 65 (161)
T 3fwb_A 11 GPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLI 65 (161)
T ss_dssp TTTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 345677999999999999963 468899999888888774 445555555
No 205
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=40.32 E-value=17 Score=29.41 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=32.7
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
-++...+.|.+..|-. ....+||++.|++...|-..|.+|..
T Consensus 18 Il~aa~~lf~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~ 59 (195)
T 2iu5_A 18 IAKAFKDLMQSNAYHQ-ISVSDIMQTAKIRRQTFYNYFQNQEE 59 (195)
T ss_dssp HHHHHHHHHHHSCGGG-CCHHHHHHHHTSCGGGGGGTCSSHHH
T ss_pred HHHHHHHHHHhCCCCe-eCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 4556666687777643 34778899999999999999999853
No 206
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=40.29 E-value=24 Score=25.19 Aligned_cols=45 Identities=9% Similarity=0.138 Sum_probs=34.7
Q ss_pred cccCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHcCC--Ccccchhhcc
Q psy3281 243 QTYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCL--TERQIKIWFQ 287 (317)
Q Consensus 243 t~fT~~Ql~~LE~~F~~-----n~yPs~~er~eLA~~LgL--se~qVkiWFQ 287 (317)
..++.+++..|+..|.. +.+++..+...+...+|+ +...|..+|.
T Consensus 12 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 12 AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp HHBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 35889999999999853 558999999998888874 4556776663
No 207
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=39.95 E-value=6.1 Score=34.66 Aligned_cols=7 Identities=29% Similarity=0.444 Sum_probs=2.8
Q ss_pred HHHHcCC
Q psy3281 271 IAHALCL 277 (317)
Q Consensus 271 LA~~LgL 277 (317)
|++++|+
T Consensus 90 i~~~~G~ 96 (283)
T 2yln_A 90 VAEKLGV 96 (283)
T ss_dssp HHHHHTC
T ss_pred HHHHcCC
Confidence 3344443
No 208
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=39.89 E-value=6.1 Score=36.62 Aligned_cols=28 Identities=11% Similarity=0.043 Sum_probs=15.1
Q ss_pred cCHHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q psy3281 245 YTRYQTLELEKEFHFNRYLTRRRRIEIAHA 274 (317)
Q Consensus 245 fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~ 274 (317)
++.+-+..|+..++ ...+..+...|++.
T Consensus 54 ~sPe~i~~f~ALse--~~~TP~D~~~ml~a 81 (262)
T 1d1d_A 54 RSPITMAEVEALMS--SPLLPHDVTNLMRV 81 (262)
T ss_dssp TSSHHHHHHHHHHT--SCCCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHc--CCCChHHHHHHHHH
Confidence 35666666665553 23455555555554
No 209
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=39.81 E-value=17 Score=25.64 Aligned_cols=44 Identities=11% Similarity=0.110 Sum_probs=30.9
Q ss_pred ccCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHcC-CCcccchhhcc
Q psy3281 244 TYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALC-LTERQIKIWFQ 287 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~-----n~yPs~~er~eLA~~Lg-Lse~qVkiWFQ 287 (317)
.++.+++..|+..|.. +.+++..+...+...+| ++...|..+|.
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 53 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMA 53 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4678888888888853 45788888888777776 55566666663
No 210
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=39.79 E-value=8.9 Score=31.67 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=32.0
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
++...+.|.... ......+||++.|++...|-.+|.||..
T Consensus 26 l~aA~~lf~~~G--~~~s~~~IA~~aGvs~~tlY~~F~sK~~ 65 (215)
T 2hku_A 26 FTAATELFLEHG--EGVPITQICAAAGAHPNQVTYYYGSKER 65 (215)
T ss_dssp HHHHHHHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 455555577766 6677889999999999999999999853
No 211
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=39.69 E-value=6.1 Score=38.16 Aligned_cols=9 Identities=22% Similarity=0.342 Sum_probs=4.3
Q ss_pred cCHHHHHHH
Q psy3281 245 YTRYQTLEL 253 (317)
Q Consensus 245 fT~~Ql~~L 253 (317)
|+.+++..|
T Consensus 39 ls~~ei~~l 47 (365)
T 4amu_A 39 FTTEEVQHL 47 (365)
T ss_dssp SCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 555554433
No 212
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=39.64 E-value=8.9 Score=26.26 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=21.0
Q ss_pred HHHHHHHcCCCcccchhhcccchh
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRRa 291 (317)
..+||+.+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 577999999999999999987664
No 213
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=39.54 E-value=9.8 Score=30.96 Aligned_cols=43 Identities=12% Similarity=0.061 Sum_probs=32.5
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhh
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 293 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~ 293 (317)
++...+.|....|-. ....+||++.|+++..|-.+|.||-.-.
T Consensus 18 l~aA~~lf~e~G~~~-~t~~~IA~~agvsk~tlY~~F~sKe~L~ 60 (192)
T 2fq4_A 18 LSASYELLLESGFKA-VTVDKIAERAKVSKATIYKWWPNKAAVV 60 (192)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCccc-ccHHHHHHHcCCCHHHHHHHCCCHHHHH
Confidence 444555577777654 3477889999999999999999986544
No 214
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=39.27 E-value=13 Score=31.58 Aligned_cols=40 Identities=13% Similarity=-0.017 Sum_probs=31.0
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhh
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 292 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK 292 (317)
++.-.+.|.... .....+||+++|++...|-..|.||-.-
T Consensus 17 l~aA~~l~~~~G---~~s~~~IA~~aGvs~~tlY~hF~~K~~L 56 (213)
T 2g7g_A 17 AEAALELVDRDG---DFRMPDLARHLNVQVSSIYHHAKGRAAV 56 (213)
T ss_dssp HHHHHHHHHHHS---SCCHHHHHHHTTSCHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHhCCCHhHHHHHcCCHHHH
Confidence 445555666666 5567889999999999999999997543
No 215
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=39.03 E-value=36 Score=24.81 Aligned_cols=57 Identities=16% Similarity=0.189 Sum_probs=44.1
Q ss_pred cCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhcccC
Q psy3281 245 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKD 301 (317)
Q Consensus 245 fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k~k~ 301 (317)
++.....+|..+=+.+-.....-+++|...---+++.|..+.-|.|+-||-++.++.
T Consensus 5 ls~~e~~vLDlYe~SnIrIP~DIIEdl~~~~L~te~EVmnYiEnqR~~WKLEN~KKl 61 (67)
T 2bnk_A 5 LSACEVAVLDLYEQSNIRIPSDIIEDLVNQRLQSEQEVLNYIETQRTYWKLENQKKL 61 (67)
T ss_dssp CCSSHHHHHHHHHHTTCCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTSCC
T ss_pred hhHHHHHHHHHHHHcCCcCcHHHHHHHHHHhhhhHHHHHHHHHhhHhHHhhhhhHHH
Confidence 455566777666566667777778888866656888999999999999998877765
No 216
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=39.02 E-value=12 Score=31.46 Aligned_cols=40 Identities=8% Similarity=-0.006 Sum_probs=30.8
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
++.-.+.|....|-. ....+||++.|+++..|..+|.+|.
T Consensus 20 l~AA~~lf~~~G~~~-~s~~~IA~~AGvs~~tlY~~F~sKe 59 (208)
T 3v6g_A 20 VEAAERVIARQGLGG-LSHRRVAAEANVPVGSTTYYFNDLD 59 (208)
T ss_dssp HHHHHHHHHHHCTTC-CCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCchhHHHHcCCHH
Confidence 444555677777644 3467889999999999999999874
No 217
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=38.99 E-value=8.5 Score=30.85 Aligned_cols=41 Identities=15% Similarity=0.070 Sum_probs=30.9
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++...+.|....|-. ....+||++.|++...|-.+|.||.
T Consensus 13 Il~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~ 53 (206)
T 3dew_A 13 LMEVATELFAQKGFYG-VSIRELAQAAGASISMISYHFGGKE 53 (206)
T ss_dssp HHHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHSCHHH
T ss_pred HHHHHHHHHhcCCccc-CcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3455555677666533 3467889999999999999999985
No 218
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=38.69 E-value=14 Score=27.29 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCcccchhhcccch
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRR 290 (317)
.++||+.||++...|..|+.++.
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~ 35 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGE 35 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHhCCC
Confidence 78899999999999999986643
No 219
>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase; HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A*
Probab=38.56 E-value=6.6 Score=37.01 Aligned_cols=12 Identities=0% Similarity=-0.028 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhh
Q psy3281 247 RYQTLELEKEFH 258 (317)
Q Consensus 247 ~~Ql~~LE~~F~ 258 (317)
.+..++|+.+++
T Consensus 60 ~~~~~~l~~Al~ 71 (344)
T 2bgs_A 60 SDTAHSVRTAIT 71 (344)
T ss_dssp GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344566666666
No 220
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=38.46 E-value=9.7 Score=30.60 Aligned_cols=40 Identities=8% Similarity=0.074 Sum_probs=30.5
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
++...+.|....|-. ....+||++.|++...|-..|.||-
T Consensus 20 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~ 59 (203)
T 3f1b_A 20 LDAAVDVFSDRGFHE-TSMDAIAAKAEISKPMLYLYYGSKD 59 (203)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHTTSCHHHHHHHCCSHH
T ss_pred HHHHHHHHHHcCccc-ccHHHHHHHhCCchHHHHHHhCCHH
Confidence 444455577766643 4477889999999999999999985
No 221
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=38.38 E-value=16 Score=29.64 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++...+.|....|-. ....+||++.|++...|-..|.||-
T Consensus 22 Il~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~ 62 (207)
T 2rae_A 22 ISTVGIELFTEQGFDA-TSVDEVAEASGIARRTLFRYFPSKN 62 (207)
T ss_dssp HHHHHHHHHHHHCTTT-SCHHHHHHHTTSCHHHHHHHCSSTT
T ss_pred HHHHHHHHHHHcCccc-CCHHHHHHHhCCCcchHhhhCCCHH
Confidence 3555556677777644 4477889999999999999999984
No 222
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=37.89 E-value=5.4 Score=31.67 Aligned_cols=42 Identities=5% Similarity=0.010 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
-++...+.|....|-. ....+||++.|++...|-..|.|+..
T Consensus 17 Il~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~ 58 (177)
T 3kkc_A 17 IYNAFISLLQENDYSK-ITVQDVIGLANVGRSTFYSHYESKEV 58 (177)
T ss_dssp HHHHHHHHTTTSCTTT-CCHHHHHHHHCCCHHHHTTTCSSTHH
T ss_pred HHHHHHHHHHhCChhH-hhHHHHHHHhCCcHhhHHHHcCCHHH
Confidence 3555666677776644 34678899999999999999998854
No 223
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=37.87 E-value=28 Score=24.93 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=19.3
Q ss_pred HHHHHHHHcCCCcccchhhcccch
Q psy3281 267 RRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 267 er~eLA~~LgLse~qVkiWFQNRR 290 (317)
...+||+.+|++...|..|..+++
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 345888889999888888887765
No 224
>3oe3_A Putative periplasmic protein; beta barrel, hydrolase inhibitor; 1.51A {Salmonella enterica}
Probab=37.86 E-value=6.4 Score=31.27 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=9.2
Q ss_pred CCeeecchhhh
Q psy3281 115 TPVVYASCKLQ 125 (317)
Q Consensus 115 ~p~~y~scklq 125 (317)
-=|||.-|+|.
T Consensus 79 g~~i~~~C~~~ 89 (98)
T 3oe3_A 79 DKPVLSNCSLA 89 (98)
T ss_dssp TEEEEEEEEEC
T ss_pred CCEEEcCcEec
Confidence 34799999998
No 225
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=37.84 E-value=13 Score=32.05 Aligned_cols=23 Identities=9% Similarity=0.205 Sum_probs=15.4
Q ss_pred HHHHHHHcCCCcccchhhcccch
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRR 290 (317)
..+||+.+|++...|..|..+++
T Consensus 33 ~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 33 QESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp SHHHHHHHTSCHHHHHHHTTTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45667777777777777776543
No 226
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=37.82 E-value=31 Score=26.72 Aligned_cols=45 Identities=9% Similarity=0.024 Sum_probs=35.1
Q ss_pred CcccCHHHHHHHHHHhhh----CCCCCHHHHHHHHHHcCCCcccchhhc
Q psy3281 242 RQTYTRYQTLELEKEFHF----NRYLTRRRRIEIAHALCLTERQIKIWF 286 (317)
Q Consensus 242 Rt~fT~~Ql~~LE~~F~~----n~yPs~~er~eLA~~LgLse~qVkiWF 286 (317)
...++.+++..+++.|.. +.+++..|...+-..+|++...|...|
T Consensus 6 ~w~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~~el~~i~ 54 (106)
T 1eh2_A 6 PWAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVW 54 (106)
T ss_dssp CCSSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCHHHHHHHH
Confidence 356788888889888853 457888888888888898888777655
No 227
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=37.80 E-value=10 Score=26.42 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=20.8
Q ss_pred HHHHHHHcCCCcccchhhcccchh
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRRa 291 (317)
..+||+.+|++...|..|..+++.
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 568999999999999999987653
No 228
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=37.72 E-value=12 Score=29.77 Aligned_cols=42 Identities=7% Similarity=0.007 Sum_probs=32.3
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
-+....+.|....|-. ....+||++.|++...|-..|.||..
T Consensus 15 Il~aa~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~~ 56 (197)
T 3rd3_A 15 LLDTGYRIMAVKGFSG-VGLNEILQSAGVPKGSFYHYFKSKEQ 56 (197)
T ss_dssp HHHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHTTTCSCHHH
T ss_pred HHHHHHHHHHHCCccc-CCHHHHHHHhCCChhhHHHHcCCHHH
Confidence 3555666677777654 34678899999999999999999853
No 229
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=37.50 E-value=11 Score=31.73 Aligned_cols=41 Identities=10% Similarity=0.021 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++.-.+.|....|-. ....+||++.|++...|-..|.||.
T Consensus 21 il~aA~~l~~~~G~~~-~s~~~IA~~agvs~~t~Y~~F~~K~ 61 (216)
T 2oi8_A 21 IKDHAWEQIATAGASA-LSLNAIAKRMGMSGPALYRYFDGRD 61 (216)
T ss_dssp HHHHHHHHHHHHCTTS-CCHHHHHHHTTCCHHHHHTTCSSHH
T ss_pred HHHHHHHHHHhcCccc-CCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3445555677777643 4477889999999999999999985
No 230
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=37.10 E-value=10 Score=26.30 Aligned_cols=24 Identities=8% Similarity=0.263 Sum_probs=20.9
Q ss_pred HHHHHHHcCCCcccchhhcccchh
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRRa 291 (317)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 568999999999999999987654
No 231
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=37.04 E-value=14 Score=30.01 Aligned_cols=35 Identities=9% Similarity=0.029 Sum_probs=24.1
Q ss_pred HhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 256 EFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 256 ~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
.|....|-. ....+||++.|++...|-.+|.||..
T Consensus 37 lf~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 71 (212)
T 3nxc_A 37 LESSDGSQR-ITTAKLAASVGVSEAALYRHFPSKTR 71 (212)
T ss_dssp HHC-------CCHHHHHHHTTSCHHHHHTTCSSHHH
T ss_pred HHhcCChhh-cCHHHHHHHhCCChhHHHHHCCCHHH
Confidence 455555443 44778999999999999999999853
No 232
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=37.01 E-value=11 Score=32.07 Aligned_cols=40 Identities=10% Similarity=0.023 Sum_probs=31.5
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
++...+.|....|-. ....+||++.|+++..|-..|.||.
T Consensus 29 l~aA~~lf~~~G~~~-~s~~~IA~~agvs~~tlY~~F~sKe 68 (231)
T 2zcx_A 29 LDAARELGTERGIRE-ITLTDIAATVGMHKSALLRYFETRE 68 (231)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHhCCccc-CCHHHHHHHhCCCHHHHHHhCCCHH
Confidence 455556677777654 4477889999999999999999984
No 233
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=36.86 E-value=17 Score=28.86 Aligned_cols=42 Identities=10% Similarity=0.022 Sum_probs=32.6
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
-++...+.|....|-. ....+||++.|++...|-..|.||..
T Consensus 14 Il~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~ 55 (195)
T 3ppb_A 14 ILETALQLFVSQGFHG-TSTATIAREAGVATGTLFHHFPSKEQ 55 (195)
T ss_dssp HHHHHHHHHHHTCSTT-SCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCHHH
Confidence 4555666677777654 44778899999999999999999853
No 234
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=36.83 E-value=14 Score=29.48 Aligned_cols=42 Identities=10% Similarity=0.078 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 248 YQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 248 ~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
.-++...+.|....|-. ....+||++.|++...|-..|.||.
T Consensus 15 ~il~aa~~lf~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~ 56 (196)
T 3he0_A 15 QILAAAEQLIAESGFQG-LSMQKLANEAGVAAGTIYRYFSDKE 56 (196)
T ss_dssp HHHHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHhCccc-CCHHHHHHHhCCCcchHHHhcCCHH
Confidence 34556666677777644 4477889999999999999999985
No 235
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=36.83 E-value=19 Score=28.35 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=28.3
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 244 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
.++.+.|..|.+... . ...+||+.+|++...|..|-.+++
T Consensus 70 ~~~~~~l~~~R~~~g----l---sq~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 70 TVAPEFIVKVRKKLS----L---TQKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp TCCHHHHHHHHHHTT----C---CHHHHHHHHCSCTTHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHcC----C---CHHHHHHHHCCCHHHHHHHHCCCC
Confidence 455666666654432 2 245789999999999999998765
No 236
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=36.72 E-value=28 Score=28.29 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=33.7
Q ss_pred CCcccCHHHHHHHHHHhhh----CCCCCHHHHHHHHHHcCCCcccch-hh
Q psy3281 241 GRQTYTRYQTLELEKEFHF----NRYLTRRRRIEIAHALCLTERQIK-IW 285 (317)
Q Consensus 241 ~Rt~fT~~Ql~~LE~~F~~----n~yPs~~er~eLA~~LgLse~qVk-iW 285 (317)
....+|.+++..+++.|.. +.+++..+...+-.+.+|+...+. ||
T Consensus 23 ~~W~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp~~~L~~Iw 72 (121)
T 3fia_A 23 DTWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIW 72 (121)
T ss_dssp TTSCCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCCHHHHHHHH
Confidence 3456788888888888864 347788888887778888877754 55
No 237
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=36.65 E-value=13 Score=29.81 Aligned_cols=42 Identities=7% Similarity=-0.070 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 247 RYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 247 ~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
..-++.-.+.|....|- ....+||++.|++...|-..|.||.
T Consensus 12 ~~Il~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~sK~ 53 (190)
T 3jsj_A 12 ERLLEAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFESKD 53 (190)
T ss_dssp HHHHHHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCSCHH
T ss_pred HHHHHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcCCHH
Confidence 33455566667777776 6688899999999999999999985
No 238
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=36.59 E-value=12 Score=26.20 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCcccchhhcccch
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRR 290 (317)
..+||+.+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999998764
No 239
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=36.24 E-value=9.3 Score=31.42 Aligned_cols=45 Identities=11% Similarity=0.022 Sum_probs=32.9
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhh
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 294 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~K 294 (317)
-++...+.|....|-. ....+||++.|++...|-..|.||-.-..
T Consensus 20 Il~aA~~lf~~~G~~~-~s~~~IA~~agvs~~t~Y~~F~sKe~L~~ 64 (221)
T 3c2b_A 20 VLDQALRLLVEGGEKA-LTTSGLARAANCSKESLYKWFGDRDGLLA 64 (221)
T ss_dssp HHHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHHhCCccc-CCHHHHHHHhCCCHHHHHHhCCCHHHHHH
Confidence 3455555677776643 34678899999999999999999854433
No 240
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=36.18 E-value=14 Score=31.04 Aligned_cols=41 Identities=7% Similarity=-0.035 Sum_probs=26.2
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++.-.+.|....|-. ....+||++.|+++..|-..|.||.
T Consensus 40 Il~AA~~lf~~~G~~~-~s~~~IA~~AGvs~~tlY~~F~sKe 80 (237)
T 3kkd_A 40 ILDAAMRLIVRDGVRA-VRHRAVAAEAQVPLSATTYYFKDID 80 (237)
T ss_dssp HHHHHHHHHHHHCGGG-CCHHHHHHHHTSCTTTC-----CHH
T ss_pred HHHHHHHHHHhcChhh-cCHHHHHHHhCCChhHHHHHcCCHH
Confidence 3444455577777643 3467889999999999999999985
No 241
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=36.10 E-value=20 Score=28.67 Aligned_cols=41 Identities=10% Similarity=0.097 Sum_probs=30.3
Q ss_pred cccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhccc
Q psy3281 243 QTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 288 (317)
Q Consensus 243 t~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQN 288 (317)
..++.+....+...+. .. ....+||+.||++...|..|+..
T Consensus 31 ~~~s~e~r~~iv~~~~-~G----~s~~~iA~~lgis~~TV~rw~~~ 71 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QG----VRPCDISRQLRVSHGCVSKILGR 71 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TT----CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cC----CCHHHHHHHHCcCHHHHHHHHHH
Confidence 4578887666666664 32 23567899999999999999864
No 242
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=35.93 E-value=22 Score=29.45 Aligned_cols=47 Identities=21% Similarity=0.052 Sum_probs=36.2
Q ss_pred cccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhh
Q psy3281 243 QTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 295 (317)
Q Consensus 243 t~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK 295 (317)
..+|..+.++|+-..+-. .+++||..++++++.|+....|=|.|...
T Consensus 153 ~~Lt~rE~~vl~~l~~g~------s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~ 199 (215)
T 1a04_A 153 NQLTPRERDILKLIAQGL------PNKMIARRLDITESTVKVHVKHMLKKMKL 199 (215)
T ss_dssp GGSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 458999988887665422 36789999999999999988777666543
No 243
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=35.73 E-value=18 Score=29.14 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
-++...+.|.+..|-. ....+||++.|++...|-.+|.+|..
T Consensus 12 Il~aA~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 53 (195)
T 2dg7_A 12 LKRAALELYSEHGYDN-VTVTDIAERAGLTRRSYFRYFPDKRE 53 (195)
T ss_dssp HHHHHHHHHHHSCGGG-CCHHHHHHHTTCCHHHHHHHCSSTTG
T ss_pred HHHHHHHHHHhcCccc-cCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 4555566677777643 34678899999999999999998753
No 244
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=35.40 E-value=7.9 Score=39.45 Aligned_cols=14 Identities=43% Similarity=0.828 Sum_probs=0.0
Q ss_pred CCCCCCcCCCCCCC
Q psy3281 141 DLVDPTLNNHHHHQ 154 (317)
Q Consensus 141 pl~~~~~~hHhhh~ 154 (317)
+.....+.||||||
T Consensus 566 ~~~~~~~~~~~~~~ 579 (587)
T 3jrx_A 566 DIMLGVLEHHHHHH 579 (587)
T ss_dssp --------------
T ss_pred cchhhhhhhcccch
Confidence 33334566666665
No 245
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=35.39 E-value=13 Score=30.20 Aligned_cols=42 Identities=7% Similarity=-0.104 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 248 YQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 248 ~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
.-+....+.|....|-. ....+||++.|++...|-.+|.||.
T Consensus 13 ~Il~aa~~l~~~~G~~~-~ti~~IA~~agvs~~t~Y~~F~sK~ 54 (193)
T 2dg8_A 13 RILAATLDLIAEEGIAR-VSHRRIAQRAGVPLGSMTYHFTGIE 54 (193)
T ss_dssp HHHHHHHHHHHHHCGGG-CCHHHHHHHHTSCTHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHhChhh-ccHHHHHHHhCCCchhhheeCCCHH
Confidence 34555566677777633 4477889999999999999999985
No 246
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=35.17 E-value=11 Score=31.06 Aligned_cols=41 Identities=10% Similarity=-0.019 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++.-.+.|....|-. ....+||++.|+++..|-.+|.||.
T Consensus 14 Il~AA~~lf~~~G~~~-~s~~~IA~~AGvs~gtlY~~F~sKe 54 (203)
T 2np5_A 14 LAAALFDVAAESGLEG-ASVREVAKRAGVSIGAVQHHFSTKD 54 (203)
T ss_dssp HHHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHhChhh-ccHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3555556677777653 3477889999999999999999985
No 247
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=34.77 E-value=12 Score=25.45 Aligned_cols=24 Identities=17% Similarity=0.219 Sum_probs=20.8
Q ss_pred HHHHHHHcCCCcccchhhcccchh
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRRa 291 (317)
..+||+.+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999987654
No 248
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=34.35 E-value=12 Score=26.01 Aligned_cols=23 Identities=22% Similarity=0.104 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCcccchhhcccch
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRR 290 (317)
..+||+.+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 56799999999999999998765
No 249
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=34.32 E-value=23 Score=27.33 Aligned_cols=44 Identities=16% Similarity=0.127 Sum_probs=31.5
Q ss_pred cccCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHcCCCcccchhhc
Q psy3281 243 QTYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCLTERQIKIWF 286 (317)
Q Consensus 243 t~fT~~Ql~~LE~~F~~-----n~yPs~~er~eLA~~LgLse~qVkiWF 286 (317)
..++.+++..|++.|.. +.+++..|...+....+++...|..+|
T Consensus 6 w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~ 54 (111)
T 2kgr_A 6 WAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIW 54 (111)
T ss_dssp SSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHH
Confidence 45677778888888853 447788888777667777777777665
No 250
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=34.05 E-value=13 Score=26.55 Aligned_cols=24 Identities=8% Similarity=0.162 Sum_probs=21.0
Q ss_pred HHHHHHHcCCCcccchhhcccchh
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRRa 291 (317)
..+||+.+|++...|..|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 467999999999999999987764
No 251
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=33.99 E-value=12 Score=27.67 Aligned_cols=24 Identities=17% Similarity=0.516 Sum_probs=20.9
Q ss_pred HHHHHHHcCCCcccchhhcccchh
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRRa 291 (317)
..+||+.+|++...|..|..+++.
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~~ 48 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCC
Confidence 567999999999999999987653
No 252
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=33.99 E-value=15 Score=29.89 Aligned_cols=41 Identities=15% Similarity=0.197 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++...+.|....|-. ....+||++.|++...|-..|.||.
T Consensus 16 Il~aA~~lf~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~ 56 (216)
T 3f0c_A 16 IINAAQKRFAHYGLCK-TTMNEIASDVGMGKASLYYYFPDKE 56 (216)
T ss_dssp HHHHHHHHHHHHCSSS-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHcCCCc-CCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3555556677777644 3467889999999999999999985
No 253
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=33.96 E-value=8.6 Score=37.45 Aligned_cols=7 Identities=57% Similarity=1.274 Sum_probs=0.0
Q ss_pred CCCCCCC
Q psy3281 148 NNHHHHQ 154 (317)
Q Consensus 148 ~hHhhh~ 154 (317)
+||||||
T Consensus 2 ~~~~~~~ 8 (389)
T 3a5i_A 2 GHHHHHH 8 (389)
T ss_dssp -------
T ss_pred Ccccccc
Confidence 4444433
No 254
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=33.67 E-value=11 Score=30.40 Aligned_cols=40 Identities=10% Similarity=0.006 Sum_probs=31.0
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
++...+.|....|-. ....+||++.|++...|-.+|.||.
T Consensus 18 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~ 57 (202)
T 3lwj_A 18 LTCSLDLFIEKGYYN-TSIRDIIALSEVGTGTFYNYFVDKE 57 (202)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHCSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCchhHHHHcCCHH
Confidence 455555677777643 4477889999999999999999875
No 255
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=33.61 E-value=19 Score=24.59 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=29.8
Q ss_pred cCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHcCC--Ccccchhhcc
Q psy3281 245 YTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCL--TERQIKIWFQ 287 (317)
Q Consensus 245 fT~~Ql~~LE~~F~~-----n~yPs~~er~eLA~~LgL--se~qVkiWFQ 287 (317)
++.+++..|+..|.. +.+++..+...+...+|+ +...|..+|.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 50 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMN 50 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 466778888888852 457888888888777775 4455665553
No 256
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=33.52 E-value=8.8 Score=35.31 Aligned_cols=14 Identities=14% Similarity=-0.035 Sum_probs=8.7
Q ss_pred HHHHHHcCCCcccc
Q psy3281 269 IEIAHALCLTERQI 282 (317)
Q Consensus 269 ~eLA~~LgLse~qV 282 (317)
..+|+.++++.-.+
T Consensus 144 ~~aA~~~giP~v~~ 157 (398)
T 3oti_A 144 LLAADRAGVPAVQR 157 (398)
T ss_dssp HHHHHHHTCCEEEE
T ss_pred HHHHHHcCCCEEEE
Confidence 35677888765433
No 257
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=33.45 E-value=5.9 Score=29.02 Aligned_cols=23 Identities=9% Similarity=0.205 Sum_probs=16.7
Q ss_pred HHHHHHHcCCCcccchhhcccch
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRR 290 (317)
..+||+.+|++...|..|..+++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45677788888888888876653
No 258
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=33.34 E-value=21 Score=29.30 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 248 YQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 248 ~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
.-++.-.+.|....|-. ....+||++.|+++..|-..|.||..
T Consensus 15 ~Il~aA~~lF~~~Gy~~-ts~~~IA~~aGvsk~tlY~~F~sKe~ 57 (202)
T 2i10_A 15 VALQTAMELFWRQGYEG-TSITDLTKALGINPPSLYAAFGSKRD 57 (202)
T ss_dssp HHHHHHHHHHHHHTTTT-CCHHHHHHHHTCCHHHHHHHHCSHHH
T ss_pred HHHHHHHHHHHHhCccc-CCHHHHHHHhCCChHHHHHHhCCHHH
Confidence 34555566688877754 34778899999999999999998754
No 259
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=33.33 E-value=23 Score=29.23 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=31.2
Q ss_pred CcccCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHcCCCcc
Q psy3281 242 RQTYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCLTER 280 (317)
Q Consensus 242 Rt~fT~~Ql~~LE~~F~~-----n~yPs~~er~eLA~~LgLse~ 280 (317)
++.||.+++..|+..|.. +.+++..|...+...+|+...
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPS 45 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChh
Confidence 467899999999999863 458999999888888886543
No 260
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=33.24 E-value=12 Score=29.65 Aligned_cols=41 Identities=7% Similarity=0.145 Sum_probs=30.8
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++...+.|....|-. ....+||++.|++...|-..|.||.
T Consensus 15 Il~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~ 55 (196)
T 3col_A 15 IQDAVAAIILAEGPAG-VSTTKVAKRVGIAQSNVYLYFKNKQ 55 (196)
T ss_dssp HHHHHHHHHHHHCGGG-CCHHHHHHHHTSCHHHHHTTCSSHH
T ss_pred HHHHHHHHHHhcCccc-CCHHHHHHHhCCcHHHHHHHhCCHH
Confidence 3555556676666533 3467889999999999999999985
No 261
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=33.23 E-value=10 Score=27.00 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=18.4
Q ss_pred HHHHHHHcCCCcccchhhcccch
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRR 290 (317)
..+||+.+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46788888888888888887765
No 262
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=33.18 E-value=13 Score=25.54 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCcccchhhcccch
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRR 290 (317)
..+||+.+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 56799999999999999998764
No 263
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=32.97 E-value=12 Score=30.30 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=30.7
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
++...+.|....|-. ....+||++.|++...|-..|.||.
T Consensus 24 l~aa~~l~~~~G~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~ 63 (212)
T 1pb6_A 24 LSAALDTFSQFGFHG-TRLEQIAELAGVSKTNLLYYFPSKE 63 (212)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHTTSCHHHHHHHSSSHH
T ss_pred HHHHHHHHHHcCcch-hhHHHHHHHHCCChhHHHHhCCCHH
Confidence 444555577766643 4477889999999999999999985
No 264
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=32.83 E-value=9.2 Score=36.46 Aligned_cols=9 Identities=0% Similarity=0.039 Sum_probs=3.9
Q ss_pred CCHHHHHHH
Q psy3281 263 LTRRRRIEI 271 (317)
Q Consensus 263 Ps~~er~eL 271 (317)
++.++.+++
T Consensus 116 ~t~e~i~~~ 124 (327)
T 1k8w_A 116 FSAEQLAAA 124 (327)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 344444443
No 265
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=32.74 E-value=25 Score=30.72 Aligned_cols=48 Identities=21% Similarity=0.133 Sum_probs=35.0
Q ss_pred CCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhh
Q psy3281 241 GRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 294 (317)
Q Consensus 241 ~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~K 294 (317)
....+|..++++|.-..+ ....++||+.||++++.|+.-..|-+.|..
T Consensus 172 ~~~~Lt~re~~vl~~~~~------G~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (237)
T 3szt_A 172 SNVRLTARETEMLKWTAV------GKTYGEIGLILSIDQRTVKFHIVNAMRKLN 219 (237)
T ss_dssp GGCCCCHHHHHHHHHHHT------TCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHc------CCCHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 345688888888876532 233678999999999999998776655543
No 266
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=32.71 E-value=34 Score=26.58 Aligned_cols=42 Identities=12% Similarity=0.239 Sum_probs=28.3
Q ss_pred CCcccCHHHHH-HHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcc
Q psy3281 241 GRQTYTRYQTL-ELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQ 287 (317)
Q Consensus 241 ~Rt~fT~~Ql~-~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQ 287 (317)
.+.+|+.+... +++..+. .. ....++|++++|+..+|..|-.
T Consensus 29 ~~rrWs~~~Kl~VV~~~~~-g~----~s~~e~arry~Is~s~i~~W~r 71 (95)
T 2jrt_A 29 DTRRWVASRKAAVVKAVIH-GL----ITEREALDRYSLSEEEFALWRS 71 (95)
T ss_dssp SCCCCCHHHHHHHHHHHHT-TS----SCHHHHHHHTTCCHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHc-CC----CCHHHHHHHhCCCHHHHHHHHH
Confidence 44557877644 4444332 22 2356889999999999999963
No 267
>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A
Probab=32.43 E-value=9.4 Score=38.14 Aligned_cols=7 Identities=57% Similarity=1.274 Sum_probs=0.0
Q ss_pred CCCCCCC
Q psy3281 148 NNHHHHQ 154 (317)
Q Consensus 148 ~hHhhh~ 154 (317)
+||||||
T Consensus 2 ~~~~~~~ 8 (471)
T 1eyb_A 2 GHHHHHH 8 (471)
T ss_dssp -------
T ss_pred Ccccccc
Confidence 4444433
No 268
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=32.26 E-value=14 Score=25.77 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.6
Q ss_pred HHHHHHHcCCCcccchhhcccch
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRR 290 (317)
..+||+.+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999998876
No 269
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=31.93 E-value=9.7 Score=39.71 Aligned_cols=11 Identities=18% Similarity=0.579 Sum_probs=4.1
Q ss_pred HHHHHhhhCCC
Q psy3281 252 ELEKEFHFNRY 262 (317)
Q Consensus 252 ~LE~~F~~n~y 262 (317)
.++++-...+|
T Consensus 52 ~~~ey~df~~~ 62 (800)
T 3oc3_A 52 QIKEYVDFTPY 62 (800)
T ss_dssp HHHHHCCCCSS
T ss_pred HHHHHhcchhH
Confidence 33333333333
No 270
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=31.80 E-value=23 Score=29.32 Aligned_cols=36 Identities=8% Similarity=0.053 Sum_probs=24.1
Q ss_pred HHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 254 EKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 254 E~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
.+.|....|-. ....+||++.|+++..|-..|.||.
T Consensus 34 ~~lf~e~G~~~-~s~~~IA~~aGvskgtlY~yF~sKe 69 (214)
T 2oer_A 34 VQVLASEGAQR-FTTARVAERAGVSIGSLYQYFPNKA 69 (214)
T ss_dssp HHC------CC-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHhhCccc-ccHHHHHHHhCCCCchHHHhCCCHH
Confidence 34466666654 3477889999999999999999985
No 271
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=31.43 E-value=79 Score=22.72 Aligned_cols=47 Identities=13% Similarity=-0.012 Sum_probs=32.2
Q ss_pred CCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHc-CCCcccchhhcccch
Q psy3281 240 RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL-CLTERQIKIWFQNRR 290 (317)
Q Consensus 240 R~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~L-gLse~qVkiWFQNRR 290 (317)
.++..||.++-..|...+..-.. .. ..||..+ |=+..+|+.-|.+--
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~-~W---~~Ia~~~~~Rt~~q~k~r~~~~l 54 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR-RW---TKISKLIGSRTVLQVKSYARQYF 54 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS-CH---HHHHHHHSSSCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-CH---HHHHHHcCCCCHHHHHHHHHHHH
Confidence 45678999999999888876554 32 3455555 567788887665543
No 272
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=31.26 E-value=44 Score=23.74 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=18.1
Q ss_pred HHHHHHHcCCCcccchhhcccch
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRR 290 (317)
..+||+.+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46688888888888888887654
No 273
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=31.25 E-value=15 Score=26.57 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=20.9
Q ss_pred HHHHHHHcCCCcccchhhcccch
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRR 290 (317)
..+||+.+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999998876
No 274
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=31.19 E-value=1.7e+02 Score=23.82 Aligned_cols=35 Identities=17% Similarity=0.044 Sum_probs=26.2
Q ss_pred cccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHH
Q psy3281 236 FERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIE 270 (317)
Q Consensus 236 ~krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~e 270 (317)
.+++|+|..||.++.+.|....++...-...++..
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~ 59 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKF 59 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence 45677889999999999999988766545554443
No 275
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=31.11 E-value=14 Score=29.65 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++...+.|....|-. ....+||++.|++...|-..|.||-
T Consensus 16 Il~aA~~lf~~~G~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~ 56 (203)
T 3b81_A 16 LANKIWDIFIANGYEN-TTLAFIINKLGISKGALYHYFSSKE 56 (203)
T ss_dssp HHHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHcCccc-CcHHHHHHHhCCCchhHHHHcCCHH
Confidence 3455555677777654 4477889999999999999999984
No 276
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=30.74 E-value=13 Score=31.20 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
-++...+.|....|-. ....+||++.|+++..|-..|.||-.
T Consensus 44 Il~AA~~lf~e~G~~~-~tv~~IA~~AGvs~~tlY~~F~sKe~ 85 (214)
T 2guh_A 44 IVDAAGRAFATRPYRE-ITLKDIAEDAGVSAPLIIKYFGSKEQ 85 (214)
T ss_dssp HHHHHHHHHHHSCGGG-CCHHHHHHHHTSCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHHcChhh-cCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 3555556677777643 34677899999999999999998753
No 277
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=30.68 E-value=15 Score=25.97 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=20.4
Q ss_pred HHHHHHHcCCCcccchhhcccch
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRR 290 (317)
..+||+++|++...|..|..+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56799999999999999998865
No 278
>4g2c_A DYP2; DYE peroxidase, oxidoreductase; HET: HEM; 2.25A {Amycolatopsis SP}
Probab=30.21 E-value=11 Score=37.86 Aligned_cols=8 Identities=25% Similarity=0.244 Sum_probs=3.7
Q ss_pred HcCCCccc
Q psy3281 274 ALCLTERQ 281 (317)
Q Consensus 274 ~LgLse~q 281 (317)
+||++...
T Consensus 126 aLGv~~~~ 133 (493)
T 4g2c_A 126 TLGVTAPA 133 (493)
T ss_dssp HHTCCCCC
T ss_pred HcCCCCCc
Confidence 34554443
No 279
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=30.05 E-value=16 Score=29.95 Aligned_cols=41 Identities=22% Similarity=0.161 Sum_probs=31.5
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
++.-.+.|....|-. ....+||++.|++...|-.+|.||..
T Consensus 16 l~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~t~Y~~F~sKe~ 56 (210)
T 3vib_A 16 MLAALETFYRKGIAR-TSLNEIAQAAGVTRDALYWHFKNKED 56 (210)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHHCcCHHHHHHHCCCHHH
Confidence 444455677777754 33778899999999999999999853
No 280
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=30.03 E-value=22 Score=29.18 Aligned_cols=41 Identities=15% Similarity=0.059 Sum_probs=31.8
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
++.-.+.|....|-. ....+||++.|+++..|-..|.||..
T Consensus 17 l~aA~~lf~~~G~~~-~s~~~IA~~aGvskgtlY~~F~sKe~ 57 (210)
T 2wui_A 17 LDAAERVFLEKGVGT-TAMADLADAAGVSRGAVYGHYKNKIE 57 (210)
T ss_dssp HHHHHHHHHHSCTTT-CCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCccc-cCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 444455588887764 34778899999999999999999854
No 281
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=29.71 E-value=45 Score=26.96 Aligned_cols=42 Identities=12% Similarity=0.190 Sum_probs=31.8
Q ss_pred ccCHHHHHHHHHHhhh-------CCCCCHHHHHHHHHHcCCCc--ccchhh
Q psy3281 244 TYTRYQTLELEKEFHF-------NRYLTRRRRIEIAHALCLTE--RQIKIW 285 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~-------n~yPs~~er~eLA~~LgLse--~qVkiW 285 (317)
.+|.+|+..|+.+|.. +.+++..+...+.+.||+.. ..|+..
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~t~~el~~~ 52 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQH 52 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCCCHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4789999999999852 35899999988888888654 445443
No 282
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=29.71 E-value=15 Score=25.56 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=17.8
Q ss_pred HHHHHHHcCCCcccchhhc
Q psy3281 268 RIEIAHALCLTERQIKIWF 286 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWF 286 (317)
..+||+.||++...|..|+
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 5789999999999999998
No 283
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=29.51 E-value=21 Score=29.39 Aligned_cols=41 Identities=17% Similarity=0.052 Sum_probs=32.5
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++.-.+.|....|-. ....+||++.|+++..|-..|.||.
T Consensus 16 Il~aA~~lf~~~G~~~-~s~~~IA~~aGvskgtlY~~F~sKe 56 (219)
T 2w53_A 16 ILDAAEACFHEHGVAR-TTLEMIGARAGYTRGAVYWHFKNKS 56 (219)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHhCccc-CCHHHHHHHhCCCchHHhhcCCCHH
Confidence 3555566687777654 4477889999999999999999985
No 284
>2lie_A CCL2 lectin; sugar binding protein; NMR {Coprinopsis cinerea} PDB: 2liq_A*
Probab=35.34 E-value=12 Score=31.67 Aligned_cols=11 Identities=18% Similarity=0.012 Sum_probs=5.1
Q ss_pred CHHHHHHHHHH
Q psy3281 246 TRYQTLELEKE 256 (317)
Q Consensus 246 T~~Ql~~LE~~ 256 (317)
+.+|.-+|+.+
T Consensus 58 Sa~q~Wil~~~ 68 (153)
T 2lie_A 58 SSEQAWILRSY 68 (153)
Confidence 44455555443
No 285
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=29.08 E-value=19 Score=29.14 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=29.7
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
++...+.|....|-. ....+||++.|++...|-..|.||.
T Consensus 32 l~aA~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~ 71 (217)
T 3mvp_A 32 LQVAKDLFSDKTYFN-VTTNEIAKKADVSVGTLYAYFASKE 71 (217)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcCccc-cCHHHHHHHhCCChhHHHHHcCCHH
Confidence 444445576666533 3467789999999999999999875
No 286
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=28.96 E-value=18 Score=29.30 Aligned_cols=42 Identities=7% Similarity=-0.040 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
-+....+.|....|-. ....+||++.|++...|-..|.||-.
T Consensus 19 Il~aa~~l~~~~G~~~-~ti~~IA~~agvs~~t~Y~~F~sK~~ 60 (212)
T 3knw_A 19 ILDSGFHLVLRKGFVG-VGLQEILKTSGVPKGSFYHYFESKEA 60 (212)
T ss_dssp HHHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHcCCcc-CCHHHHHHHhCCChHHHHHHCCCHHH
Confidence 3455555677777644 34778899999999999999999853
No 287
>2bu3_A ALR0975 protein; phytochelatin synthase, PCS, acyl-enzyme intermedia nostoc, glutathione metabolism, cysteine protease, transfer; HET: 3GC; 1.4A {Anabaena SP} SCOP: d.3.1.14 PDB: 2btw_A* 2btw_B
Probab=28.92 E-value=12 Score=34.53 Aligned_cols=10 Identities=0% Similarity=-0.183 Sum_probs=3.7
Q ss_pred HHHHHHHHcC
Q psy3281 267 RRIEIAHALC 276 (317)
Q Consensus 267 er~eLA~~Lg 276 (317)
+...|++..|
T Consensus 138 el~~La~c~G 147 (254)
T 2bu3_A 138 ELGRLIASYG 147 (254)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHhCC
Confidence 3333333333
No 288
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A
Probab=28.73 E-value=12 Score=36.11 Aligned_cols=7 Identities=14% Similarity=0.017 Sum_probs=2.5
Q ss_pred cCHHHHH
Q psy3281 245 YTRYQTL 251 (317)
Q Consensus 245 fT~~Ql~ 251 (317)
+....+.
T Consensus 67 L~~qhl~ 73 (358)
T 3tut_A 67 LLRQHLT 73 (358)
T ss_dssp CCHHHHH
T ss_pred ccHHHHH
Confidence 3333333
No 289
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=28.71 E-value=12 Score=35.43 Aligned_cols=9 Identities=11% Similarity=0.121 Sum_probs=4.3
Q ss_pred chhhhHHhh
Q psy3281 121 SCKLQAAVG 129 (317)
Q Consensus 121 scklqaa~~ 129 (317)
.+|+-.|+.
T Consensus 282 a~~~~~a~~ 290 (314)
T 3tr9_A 282 AIKIATYTR 290 (314)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555543
No 290
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=28.41 E-value=21 Score=28.10 Aligned_cols=41 Identities=10% Similarity=0.142 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-+....+.|....|-. ....+||++.|++...|-..|.||-
T Consensus 13 Il~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~ 53 (188)
T 3qkx_A 13 IFSATDRLMAREGLNQ-LSMLKLAKEANVAAGTIYLYFKNKD 53 (188)
T ss_dssp HHHHHHHHHHHSCSTT-CCHHHHHHHHTCCHHHHHHHSSSHH
T ss_pred HHHHHHHHHHhcCccc-CCHHHHHHHhCCCcchHHHHcCCHH
Confidence 3555566677777654 4477889999999999999999985
No 291
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=28.37 E-value=13 Score=30.45 Aligned_cols=41 Identities=5% Similarity=0.063 Sum_probs=30.4
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
++...+.|....|-. ....+||++.|++...|-.+|.||-.
T Consensus 29 l~aA~~lf~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~ 69 (214)
T 2zb9_A 29 LHAVGELLLTEGTAQ-LTFERVARVSGVSKTTLYKWWPSKGA 69 (214)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHCCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHHCCCHHHHHHHCCCHHH
Confidence 444445576666644 34678899999999999999999853
No 292
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=28.35 E-value=18 Score=28.99 Aligned_cols=41 Identities=10% Similarity=0.195 Sum_probs=30.8
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
++...+.|....|-. ....+||++.|++...|-.+|.||..
T Consensus 14 l~aA~~l~~~~G~~~-~t~~~IA~~Agvs~~tly~~F~sK~~ 54 (194)
T 3dpj_A 14 VAAADELFYRQGFAQ-TSFVDISAAVGISRGNFYYHFKTKDE 54 (194)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHHCCChHHHHHHcCCHHH
Confidence 444555576666644 34678899999999999999999853
No 293
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=28.09 E-value=5.7 Score=32.23 Aligned_cols=40 Identities=5% Similarity=-0.021 Sum_probs=29.0
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
++...+.|....|- .....+||++.|++...|-..|.||-
T Consensus 20 l~aa~~l~~~~G~~-~~t~~~Ia~~agvs~~t~Y~~F~sK~ 59 (215)
T 3e7q_A 20 IEATLACLKRHGFQ-GASVRKICAEAGVSVGLINHHYDGKD 59 (215)
T ss_dssp HHHHHHHHHHHHHH-HCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcCcc-cCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 44444456555542 33467889999999999999999985
No 294
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=28.05 E-value=17 Score=26.75 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=19.9
Q ss_pred HHHHHHHcCCCcccchhhcccch
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRR 290 (317)
..+||+.+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56789999999999999998764
No 295
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=27.78 E-value=42 Score=23.79 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhh-----hCCCCCHHHHHHHHHHcC--CCcccchhhc
Q psy3281 247 RYQTLELEKEFH-----FNRYLTRRRRIEIAHALC--LTERQIKIWF 286 (317)
Q Consensus 247 ~~Ql~~LE~~F~-----~n~yPs~~er~eLA~~Lg--Lse~qVkiWF 286 (317)
.+.+..|+..|. .+.+++..+...+...+| ++...|..+|
T Consensus 5 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~ 51 (92)
T 2kn2_A 5 TDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMI 51 (92)
T ss_dssp CHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 445555666663 234677777777777776 4455555555
No 296
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=27.57 E-value=18 Score=25.69 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCcccchhhcccch
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRR 290 (317)
..+||+.+|++...|..|..+++
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46799999999999999998764
No 297
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=27.54 E-value=60 Score=25.02 Aligned_cols=47 Identities=11% Similarity=0.290 Sum_probs=33.5
Q ss_pred CcccCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHcCC--Ccccchhhccc
Q psy3281 242 RQTYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCL--TERQIKIWFQN 288 (317)
Q Consensus 242 Rt~fT~~Ql~~LE~~F~~-----n~yPs~~er~eLA~~LgL--se~qVkiWFQN 288 (317)
-..++.+++..|+..|.. +.+++..+...+...+|+ +...|..+|.+
T Consensus 9 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 62 (156)
T 1wdc_B 9 LTKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKE 62 (156)
T ss_dssp ---CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSSCCCHHHHHHHHTT
T ss_pred hccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 346889999999999853 558999999888888774 45566666643
No 298
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=27.15 E-value=22 Score=29.17 Aligned_cols=41 Identities=17% Similarity=0.076 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++.-.+.|....|-. ....+||++.|+++..|-.+|.||-
T Consensus 13 Il~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~tiY~~F~sKe 53 (202)
T 2d6y_A 13 IFEAAVAEFARHGIAG-ARIDRIAAEARANKQLIYAYYGNKG 53 (202)
T ss_dssp HHHHHHHHHHHHTTTS-CCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred HHHHHHHHHHHcCccc-CCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3555556677777644 3477889999999999999999875
No 299
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=27.07 E-value=33 Score=27.64 Aligned_cols=41 Identities=15% Similarity=-0.023 Sum_probs=31.9
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++.....|....|-. ....+||++.|+++..|-.+|.+|-
T Consensus 9 Il~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~ 49 (185)
T 2yve_A 9 ILRTAIDYIGEYSLET-LSYDSLAEATGLSKSGLIYHFPSRH 49 (185)
T ss_dssp HHHHHHHHHHHSCSTT-CCHHHHHHHHCCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHcChhh-ccHHHHHHHhCCChHHHHHhCcCHH
Confidence 3555566677777643 4477889999999999999999974
No 300
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=27.06 E-value=11 Score=31.51 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=30.5
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
++.-.+.|....|-. ....+||++.|++...|-.+|.||-.
T Consensus 36 l~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~sK~~ 76 (226)
T 2pz9_A 36 VAAAKEEFARHGIAG-ARVDRIAKQARTSKERVYAYFRSKEA 76 (226)
T ss_dssp HHHHHHHHHHHHHHH-CCHHHHHHHTTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhCccc-CcHHHHHHHHCCChHHHHHHcCCHHH
Confidence 555555676666532 34678899999999999999998853
No 301
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=26.69 E-value=24 Score=27.98 Aligned_cols=41 Identities=15% Similarity=-0.024 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++...+.|....|-. ....+||++.|++...|-..|.||.
T Consensus 12 Il~aA~~l~~~~G~~~-~s~~~IA~~agvs~~tly~~F~sK~ 52 (180)
T 2fd5_A 12 ILGAATQALLERGAVE-PSVGEVMGAAGLTVGGFYAHFQSKD 52 (180)
T ss_dssp HHHHHHHHHHHHTTTS-CCHHHHHHHTTCCGGGGGGTCSCHH
T ss_pred HHHHHHHHHHHhCccc-CCHHHHHHHhCCCccHHHHHCCCHH
Confidence 3455555677777644 3477889999999999999999984
No 302
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=26.59 E-value=23 Score=29.81 Aligned_cols=45 Identities=22% Similarity=0.187 Sum_probs=33.9
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhh
Q psy3281 244 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 294 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~K 294 (317)
.+|..+.++|+.... ....++||..++++++.|+....+=|.|..
T Consensus 159 ~Lt~rE~~vL~~l~~------g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~ 203 (225)
T 3klo_A 159 KLTKREQQIIKLLGS------GASNIEIADKLFVSENTVKTHLHNVFKKIN 203 (225)
T ss_dssp TSCHHHHHHHHHHTT------TCCHHHHHHHTTCCHHHHHHHHHHHTTTSC
T ss_pred cCCHHHHHHHHHHHc------CCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 478888888877543 134678999999999999988776665543
No 303
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=26.37 E-value=15 Score=31.30 Aligned_cols=41 Identities=17% Similarity=0.094 Sum_probs=29.8
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
++.-.+.|....|-. ....+||++.|+++..|-..|.||..
T Consensus 24 l~AA~~lf~~~G~~~-~t~~~IA~~aGvs~~tlY~~F~sKe~ 64 (251)
T 3npi_A 24 LDIALSLFSELGFSD-AKLEAIAKKSGMSKRMIHYHFGDKRG 64 (251)
T ss_dssp HHHHHHHHHHHHHHH-CCHHHHHHHHCCCHHHHHHHHCSHHH
T ss_pred HHHHHHHHHHcCccc-cCHHHHHHHHCCCHHHHHHHcCCHHH
Confidence 444555566655432 33677899999999999999999853
No 304
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=26.34 E-value=41 Score=25.89 Aligned_cols=47 Identities=13% Similarity=0.251 Sum_probs=32.6
Q ss_pred CCCcccCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHcCC--Ccccchhhc
Q psy3281 240 RGRQTYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCL--TERQIKIWF 286 (317)
Q Consensus 240 R~Rt~fT~~Ql~~LE~~F~~-----n~yPs~~er~eLA~~LgL--se~qVkiWF 286 (317)
..++.++.+++..|+..|.. +.+++..+...+...+|+ +...|...|
T Consensus 5 ~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 58 (153)
T 2ovk_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAML 58 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 34677899999999999863 458888888887777664 334444444
No 305
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=26.25 E-value=24 Score=28.94 Aligned_cols=23 Identities=17% Similarity=0.475 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCcccchhhcccch
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRR 290 (317)
...||+.||++..+++.|+-..|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 46789999999999999986544
No 306
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.07 E-value=97 Score=21.73 Aligned_cols=49 Identities=14% Similarity=-0.005 Sum_probs=33.6
Q ss_pred CCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhh
Q psy3281 240 RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 292 (317)
Q Consensus 240 R~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK 292 (317)
.+|..||.++-..|....+.... . =..||+..|=+.++|+.-|.|-..+
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~-~---W~~Ia~~~gRt~~qcr~Rw~~~l~~ 55 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPT-Q---WRTIAPIIGRTAAQCLEHYEFLLDK 55 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTT-C---HHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC-C---HHHHhcccCcCHHHHHHHHHHHhCh
Confidence 45668999999999888776553 2 3455666688888888666554333
No 307
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=26.07 E-value=24 Score=24.95 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=18.7
Q ss_pred HHHHHHHcCCCcccchhhcccc
Q psy3281 268 RIEIAHALCLTERQIKIWFQNR 289 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNR 289 (317)
..++|+.||++.+.|..|..+.
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~G 26 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQG 26 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHCC
Confidence 5678999999999999998653
No 308
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=25.75 E-value=59 Score=24.44 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=28.5
Q ss_pred cCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHcCC--Ccccchhhc
Q psy3281 245 YTRYQTLELEKEFH-----FNRYLTRRRRIEIAHALCL--TERQIKIWF 286 (317)
Q Consensus 245 fT~~Ql~~LE~~F~-----~n~yPs~~er~eLA~~LgL--se~qVkiWF 286 (317)
++.+++..|+..|. .+.+++..+...+...+|+ +...|..+|
T Consensus 2 l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~l~ 50 (149)
T 2mys_C 2 FSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKIL 50 (149)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 56778888888874 2457888888777777664 344555555
No 309
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=25.67 E-value=31 Score=25.80 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCCCcccchhhcccc
Q psy3281 266 RRRIEIAHALCLTERQIKIWFQNR 289 (317)
Q Consensus 266 ~er~eLA~~LgLse~qVkiWFQNR 289 (317)
....+||+.+||+++.+...|+..
T Consensus 20 ~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 20 FTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 457789999999999888877543
No 310
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=25.49 E-value=25 Score=28.49 Aligned_cols=41 Identities=17% Similarity=0.153 Sum_probs=31.8
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++...+.|....|-. ....+||++.|++...|-..|.+|.
T Consensus 15 Il~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~ 55 (216)
T 3s5r_A 15 LLDAATTLFAEQGIAA-TTMAEIAASVGVNPAMIHYYFKTRD 55 (216)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHTTTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHcCccc-CCHHHHHHHHCCCHHHHHHHcCCHH
Confidence 3555566677777654 3477889999999999999999985
No 311
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=25.27 E-value=22 Score=29.21 Aligned_cols=40 Identities=13% Similarity=0.030 Sum_probs=32.1
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
++...+.|....|- ....+||++.|+++..|-.+|.||..
T Consensus 18 l~aA~~lf~~~G~~--~s~~~IA~~agvs~~tiY~~F~sK~~ 57 (224)
T 1t33_A 18 IAAALAQFGEYGLH--ATTRDIAALAGQNIAAITYYFGSKED 57 (224)
T ss_dssp HHHHHHHHHHHGGG--SCHHHHHHHHTSCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHhcCCHHH
Confidence 45555567777776 56888999999999999999999853
No 312
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=25.26 E-value=59 Score=25.33 Aligned_cols=44 Identities=7% Similarity=0.184 Sum_probs=34.0
Q ss_pred ccCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHcCC---Ccccchhhcc
Q psy3281 244 TYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCL---TERQIKIWFQ 287 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~-----n~yPs~~er~eLA~~LgL---se~qVkiWFQ 287 (317)
.++.+++..|+..|.. +.+++..+...+...+|+ +...|..+|.
T Consensus 18 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~ 69 (166)
T 2mys_B 18 MFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIK 69 (166)
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 6788999999999853 558999999888888876 4556666664
No 313
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=25.20 E-value=23 Score=26.06 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=20.9
Q ss_pred HHHHHHHcCCCcccchhhcccchh
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRRa 291 (317)
..+||+.+|++...|..|..+++.
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~~ 43 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRST 43 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999988654
No 314
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=25.06 E-value=22 Score=25.24 Aligned_cols=23 Identities=22% Similarity=0.095 Sum_probs=20.2
Q ss_pred HHHHHHHcCCCcccchhhcccch
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRR 290 (317)
..+||+.+|++...|..|..+++
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~~ 49 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNSR 49 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 56889999999999999998764
No 315
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=25.01 E-value=23 Score=26.73 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=9.0
Q ss_pred HHHHHcCCCcccchhhccc
Q psy3281 270 EIAHALCLTERQIKIWFQN 288 (317)
Q Consensus 270 eLA~~LgLse~qVkiWFQN 288 (317)
+||+++|++...|..|..+
T Consensus 42 eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 42 ELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp HHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHCcCHHHHHHHHcC
Confidence 4444444444444444444
No 316
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=24.98 E-value=22 Score=25.48 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCcccchhhccc
Q psy3281 268 RIEIAHALCLTERQIKIWFQN 288 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQN 288 (317)
..+||+.+|++...|..|..+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 467899999999999999988
No 317
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=24.90 E-value=29 Score=28.39 Aligned_cols=45 Identities=20% Similarity=0.120 Sum_probs=31.5
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhh
Q psy3281 244 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 294 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~K 294 (317)
.+|..+.++|+...+- ...++||..++++++.|++...|=|.|..
T Consensus 142 ~Lt~rE~~vl~~l~~g------~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~ 186 (208)
T 1yio_A 142 SLTGREQQVLQLTIRG------LMNKQIAGELGIAEVTVKVHRHNIMQKLN 186 (208)
T ss_dssp TSCHHHHHHHHHHTTT------CCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHcC------CcHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 3677777777654321 23567899999999999987776666654
No 318
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=24.80 E-value=26 Score=27.73 Aligned_cols=41 Identities=7% Similarity=-0.064 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++...+.|....|-. ....+||++.|++...|-.+|.||.
T Consensus 13 Il~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~ 53 (183)
T 1zk8_A 13 IVETAAEIADANGVQE-VTLASLAQTLGVRSPSLYNHVKGLQ 53 (183)
T ss_dssp HHHHHHHHHHHHCGGG-CCHHHHHHHHTSCHHHHTTTCSSHH
T ss_pred HHHHHHHHHHhcCccc-cCHHHHHHHcCCCchHHHHHcCCHH
Confidence 3455556676666543 3467889999999999999999974
No 319
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=24.62 E-value=36 Score=27.74 Aligned_cols=40 Identities=20% Similarity=0.153 Sum_probs=31.2
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
++.-.+.|....|-. ....+||++.|+++..|-.+|.||-
T Consensus 17 l~aA~~lf~~~G~~~-~s~~~IA~~aGvskgtlY~~F~sKe 56 (210)
T 2xdn_A 17 IEAAERAFYKRGVAR-TTLADIAELAGVTRGAIYWHFNNKA 56 (210)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCTTHHHHHCSSHH
T ss_pred HHHHHHHHHHcCccc-CcHHHHHHHHCCChHHHHHHhCCHH
Confidence 444555677777654 3477889999999999999999984
No 320
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=24.53 E-value=16 Score=38.19 Aligned_cols=6 Identities=17% Similarity=0.684 Sum_probs=2.3
Q ss_pred HHHHhh
Q psy3281 253 LEKEFH 258 (317)
Q Consensus 253 LE~~F~ 258 (317)
|...|.
T Consensus 64 ~~~~y~ 69 (800)
T 3oc3_A 64 LKQTYR 69 (800)
T ss_dssp CHHHHH
T ss_pred HHHHHH
Confidence 333343
No 321
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=24.43 E-value=12 Score=30.29 Aligned_cols=41 Identities=22% Similarity=0.105 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++...+.|....|-. ....+||++.|++...|-.+|.+|.
T Consensus 19 Il~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~ 59 (220)
T 3lhq_A 19 ILDVALRLFSQQGVSA-TSLAEIANAAGVTRGAIYWHFKNKS 59 (220)
T ss_dssp HHHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHcCccc-CCHHHHHHHhCCCceeehhhcCCHH
Confidence 3455555677777643 4467889999999999999999974
No 322
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=24.16 E-value=61 Score=23.68 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=37.8
Q ss_pred CCCCcccCHHH-HHHHHHHhhhCC-CCCHHHHHHHHHHcCCCcccchhhcccchhhhhh
Q psy3281 239 KRGRQTYTRYQ-TLELEKEFHFNR-YLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 295 (317)
Q Consensus 239 RR~Rt~fT~~Q-l~~LE~~F~~n~-yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK 295 (317)
++.|.++|.+. ...++....... .-+...+.++-..-||+..+|+.=+|.-|.+.||
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 67788889875 444444444441 2223444555555689999999999988888776
No 323
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=24.16 E-value=14 Score=29.98 Aligned_cols=41 Identities=10% Similarity=-0.068 Sum_probs=31.1
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++...+.|....|-. ....+||++.|++...|-.+|.||-
T Consensus 13 Il~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~ 53 (199)
T 2o7t_A 13 IITTTCNLYRTHHHDS-LTMENIAEQAGVGVATLYRNFPDRF 53 (199)
T ss_dssp HHHHHHHHHHHSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHCCCcc-CCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3445555677777643 3477889999999999999999974
No 324
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=24.12 E-value=1.5e+02 Score=24.04 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=33.3
Q ss_pred CcccCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHcCCC--cccchhhc
Q psy3281 242 RQTYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCLT--ERQIKIWF 286 (317)
Q Consensus 242 Rt~fT~~Ql~~LE~~F~~-----n~yPs~~er~eLA~~LgLs--e~qVkiWF 286 (317)
...|+.+++..|...|.. +.+++..+...+...+|+. ...|...|
T Consensus 48 ~~~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~l~ 99 (196)
T 3dtp_E 48 FAMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMV 99 (196)
T ss_dssp SCSSCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 446889999999999864 5689999998888888754 34454444
No 325
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=24.01 E-value=87 Score=23.01 Aligned_cols=43 Identities=19% Similarity=0.085 Sum_probs=29.4
Q ss_pred CcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchh
Q psy3281 242 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKI 284 (317)
Q Consensus 242 Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVki 284 (317)
+..+|.++...|++....-+--+...=+.||+.+|=+.++|+.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~ 50 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTT 50 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHH
Confidence 4569999999999997654422222234578888877777764
No 326
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=23.97 E-value=22 Score=24.30 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCcccchhhcccch
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRR 290 (317)
..++|+.||++...|..|..++|
T Consensus 16 ~~~~A~~lgis~~~vs~~~~~~~ 38 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVRAGR 38 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56789999999999999995543
No 327
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=23.93 E-value=47 Score=26.74 Aligned_cols=41 Identities=12% Similarity=-0.025 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++...+.|....|-. ....+||++.|++...|-..|.||-
T Consensus 24 Il~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~ 64 (216)
T 3qqa_A 24 IKAVALELFLTKGYQE-TSLSDIIKLSGGSYSNIYDGFKSKE 64 (216)
T ss_dssp HHHHHHHHHHHTCTTT-CCHHHHHHHHTTSCCSSSCSCCSHH
T ss_pred HHHHHHHHHHHcChhh-CCHHHHHHHhCCCHHHHHHhcCCHH
Confidence 3455556677777654 3467889999999999999999884
No 328
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=23.78 E-value=22 Score=24.33 Aligned_cols=22 Identities=0% Similarity=-0.129 Sum_probs=13.6
Q ss_pred HHHHHHHcC--CCcccchhhcccc
Q psy3281 268 RIEIAHALC--LTERQIKIWFQNR 289 (317)
Q Consensus 268 r~eLA~~Lg--Lse~qVkiWFQNR 289 (317)
..+||+.+| ++...|..|..++
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~g~ 47 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYERGD 47 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHTC
T ss_pred HHHHHHHHCCcCCHHHHHHHHCCC
Confidence 345666666 6666666666554
No 329
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=23.57 E-value=33 Score=27.21 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=31.1
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++...+.|....|-. ....+||++.|++...|-..|.||-
T Consensus 12 Il~aa~~l~~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~ 52 (199)
T 3qbm_A 12 VVAQAAALFNVSGYAG-TAISDIMAATGLEKGGIYRHFESKE 52 (199)
T ss_dssp HHHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHhCcCc-CCHHHHHHHhCCCccHHHHhCCCHH
Confidence 3455555677766554 3477889999999999999999984
No 330
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=23.49 E-value=23 Score=28.88 Aligned_cols=40 Identities=13% Similarity=0.023 Sum_probs=31.1
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
++.-.+.|....|-. ....+||++.|++...|-.+|.||.
T Consensus 20 l~aA~~lf~~~G~~~-~s~~~IA~~agvs~~tlY~~F~sKe 59 (204)
T 2ibd_A 20 LDIAATLFAERGLRA-TTVRDIADAAGILSGSLYHHFDSKE 59 (204)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHTTSCHHHHHHHCSCHH
T ss_pred HHHHHHHHHHcCchh-cCHHHHHHHhCCCchhHHHhcCCHH
Confidence 444555677777654 3477889999999999999999985
No 331
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=23.46 E-value=31 Score=27.16 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=30.4
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++...+.|....|-. ....+||++.|++...|-..|.||.
T Consensus 15 Il~aa~~l~~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~ 55 (191)
T 3on4_A 15 ILAVAEALIQKDGYNA-FSFKDIATAINIKTASIHYHFPSKE 55 (191)
T ss_dssp HHHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHhCccc-CCHHHHHHHhCCCcchhhhcCCCHH
Confidence 3445555566666533 3467889999999999999999985
No 332
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=23.40 E-value=71 Score=25.58 Aligned_cols=43 Identities=9% Similarity=-0.002 Sum_probs=33.1
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhh
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 292 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK 292 (317)
....+..|......+.+...+||+++||+...+..++.+...+
T Consensus 85 ~~~~~~lf~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~ 127 (175)
T 3gyk_A 85 EAFHWALMGMSGKANETGVLRIAREVGLDTEQLQRDMEAPEVT 127 (175)
T ss_dssp HHHHHHHHTCSSCCSHHHHHHHHHHTTCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHH
Confidence 3445666777667788899999999999999888887665443
No 333
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=23.07 E-value=35 Score=25.68 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=21.8
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhc
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 298 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k 298 (317)
+.+++-.|+.|+||+.+-... | -+|||.+||...+
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQr 52 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQR 52 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHH
Confidence 344555688899987552221 2 1488888887654
No 334
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=23.06 E-value=23 Score=25.77 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCcccchhhcccch
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRR 290 (317)
..+||+.+|++...|..|..+++
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999998765
No 335
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=23.04 E-value=51 Score=26.57 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++...+.|....|-. ....+||++.|++...|-..|.||-
T Consensus 18 Il~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~ 58 (217)
T 3nrg_A 18 LIDVLLDEFAQNDYDS-VSINRITERAGIAKGSFYQYFADKK 58 (217)
T ss_dssp HHHHHHHHHHHSCGGG-CCHHHHHHHHTCCTTGGGGTCSSHH
T ss_pred HHHHHHHHHHhcCccc-CCHHHHHHHhCCcHHHHHHHcCCHH
Confidence 3455555677777643 4477889999999999999999984
No 336
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=23.02 E-value=25 Score=25.23 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=20.7
Q ss_pred HHHHHHHcCCCcccchhhcccch
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRR 290 (317)
..+||+.+|++...|..|+.+++
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999998876
No 337
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=22.99 E-value=30 Score=28.59 Aligned_cols=25 Identities=8% Similarity=0.304 Sum_probs=18.2
Q ss_pred HHHHHHHHcCCCcccchhhcccchh
Q psy3281 267 RRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 267 er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
...+||+++|++...|..|..+++.
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g~~~ 46 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTRGAI 46 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHSSSC
T ss_pred CHHHHHHHhCcCHHHHHHHHhCCCC
Confidence 4567788888888888888766543
No 338
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=22.94 E-value=1.1e+02 Score=22.88 Aligned_cols=43 Identities=7% Similarity=0.278 Sum_probs=31.4
Q ss_pred cCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHcCCC--cccchhhcc
Q psy3281 245 YTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCLT--ERQIKIWFQ 287 (317)
Q Consensus 245 fT~~Ql~~LE~~F~~-----n~yPs~~er~eLA~~LgLs--e~qVkiWFQ 287 (317)
|+.+++..|+..|.. +.+++..+...+...+|+. ...|...|.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 50 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMS 50 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCCCHHHHHTTTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 578899999999863 4588999988888888753 344555543
No 339
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=22.79 E-value=54 Score=25.26 Aligned_cols=37 Identities=14% Similarity=0.039 Sum_probs=23.2
Q ss_pred cccCHHHHHHHHHH-------hhhC-CCCCHHHHHHHHHHcCCCc
Q psy3281 243 QTYTRYQTLELEKE-------FHFN-RYLTRRRRIEIAHALCLTE 279 (317)
Q Consensus 243 t~fT~~Ql~~LE~~-------F~~n-~yPs~~er~eLA~~LgLse 279 (317)
..+|..++..+-.. ++.. ..++.+....||+.||++.
T Consensus 26 ~gltq~eLA~~lGis~~~is~ie~G~~~~s~~~~~kla~~lgvs~ 70 (104)
T 3trb_A 26 DKMSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGTTP 70 (104)
T ss_dssp TSCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCH
Confidence 34566665544321 2222 3588888889999999874
No 340
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=22.63 E-value=44 Score=32.35 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=36.2
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhh
Q psy3281 244 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 294 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~K 294 (317)
.++..+..+|...|-.... .....++||..|||+...|+.+...-+.|.|
T Consensus 360 ~L~~rer~Vl~lr~~L~~~-e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 360 KLSEREAMVLKLRKGLIDG-REHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SSCHHHHHHHHHHHHTTCC------CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4678888888877743211 2345678999999999999999988888887
No 341
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=22.56 E-value=18 Score=38.36 Aligned_cols=12 Identities=8% Similarity=0.119 Sum_probs=5.8
Q ss_pred CCCCCCccccch
Q psy3281 70 PRFPPYDRMDIR 81 (317)
Q Consensus 70 ~~~~~~~~~~~~ 81 (317)
=|.-++-|..++
T Consensus 406 ~rLs~~a~~l~~ 417 (803)
T 3qx3_A 406 TMLSTLARLLFP 417 (803)
T ss_dssp ECBCTTHHHHSC
T ss_pred eeccHHHHHHhh
Confidence 344555555444
No 342
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=22.54 E-value=37 Score=27.14 Aligned_cols=42 Identities=10% Similarity=0.082 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 248 YQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 248 ~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
.-++...+.|.+..|-. ....+||++.|++...|-.+|.||.
T Consensus 11 ~Il~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~ 52 (192)
T 2zcm_A 11 KIIDNAITLFSEKGYDG-TTLDDISKSVNIKKASLYYHYDNKE 52 (192)
T ss_dssp HHHHHHHHHHHHHCTTT-CCHHHHHHHTTCCHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHcCccc-CCHHHHHHHhCCChHHHHHHCCCHH
Confidence 34555566677777644 4477889999999999999999985
No 343
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=22.45 E-value=23 Score=31.20 Aligned_cols=42 Identities=12% Similarity=0.068 Sum_probs=32.5
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
-++...+.|....|-. ....+||++.|+++..|-.+|.||..
T Consensus 46 Il~AA~~lf~e~G~~~-~S~~~IA~~AGVs~~tlY~hF~sKe~ 87 (273)
T 3c07_A 46 ILETAMRLFQERGYDR-TTMRAIAQEAGVSVGNAYYYFAGKEH 87 (273)
T ss_dssp HHHHHHHHHHHTCSTT-CCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhCCccc-cCHHHHHHHHCCCHHHHHHHcCCHHH
Confidence 3555566687777654 34778899999999999999998853
No 344
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=22.27 E-value=38 Score=26.82 Aligned_cols=41 Identities=15% Similarity=0.060 Sum_probs=31.1
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++...+.|....|-. ....+||++.|++...|-..|.||-
T Consensus 7 Il~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~ 47 (194)
T 3bqz_B 7 ILGVAKELFIKNGYNA-TTTGEIVKLSESSKGNLYYHFKTKE 47 (194)
T ss_dssp HHHHHHHHHHHHTTTT-CCHHHHHHHTTCCHHHHHHHTSSHH
T ss_pred HHHHHHHHHHHcCCcc-CCHHHHHHHhCCCchhHHHhCCCHH
Confidence 3455556676666544 3477889999999999999999984
No 345
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=22.25 E-value=34 Score=27.39 Aligned_cols=43 Identities=21% Similarity=0.195 Sum_probs=32.7
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhh
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 293 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~ 293 (317)
++...+.|....|-. ....+||++.|+++..|-.+|.+|..-.
T Consensus 9 l~aA~~lf~~~G~~~-~s~~~IA~~agvsk~t~Y~~F~sK~~L~ 51 (190)
T 3vpr_A 9 LEEAAKLFTEKGYEA-TSVQDLAQALGLSKAALYHHFGSKEEIL 51 (190)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 455556677777654 3367889999999999999999986543
No 346
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=22.19 E-value=27 Score=26.12 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=20.5
Q ss_pred HHHHHHHcCCCcccchhhcccchh
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRRa 291 (317)
..+||+.+|++...|..|-.+++.
T Consensus 46 q~elA~~lgvs~~~is~~E~G~~~ 69 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQGRSE 69 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 567999999999999999887653
No 347
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=22.19 E-value=36 Score=25.61 Aligned_cols=45 Identities=11% Similarity=-0.071 Sum_probs=29.9
Q ss_pred CCCcccCHHHHHHHHH-------HhhhCCCCCHHHHHHHHHHcCCCcccchh
Q psy3281 240 RGRQTYTRYQTLELEK-------EFHFNRYLTRRRRIEIAHALCLTERQIKI 284 (317)
Q Consensus 240 R~Rt~fT~~Ql~~LE~-------~F~~n~yPs~~er~eLA~~LgLse~qVki 284 (317)
|++..+|..+|...-. .++....++.+....||+.|+++...+-.
T Consensus 33 R~~~glTq~eLA~~~GiS~~tis~iE~G~~~s~~~l~kIa~~L~v~~~~L~~ 84 (88)
T 3t76_A 33 LIDRDMKKGELREAVGVSKSTFAKLGKNENVSLTVLLAICEYLNCDFGDIIE 84 (88)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCCHHHHHHHHHHHTCCGGGTCE
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHhc
Confidence 3344556666554322 23445568999999999999999876543
No 348
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=22.11 E-value=64 Score=25.74 Aligned_cols=41 Identities=17% Similarity=0.068 Sum_probs=31.4
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
+..-.+.|....|-. ....+||++.|+++..|-..|.+|..
T Consensus 13 l~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~sKe~ 53 (178)
T 4hku_A 13 LNMAEKIIYEKGMEK-TTLYDIASNLNVTHAALYKHYRNKED 53 (178)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHTTSCGGGGGGTCSSHHH
T ss_pred HHHHHHHHHHhCccc-ccHHHHHHHhCcCHhHHHHHCCCHHH
Confidence 444556677777643 34778899999999999999999853
No 349
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.10 E-value=47 Score=28.20 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHHcCC-Ccccchhhcccch
Q psy3281 261 RYLTRRRRIEIAHALCL-TERQIKIWFQNRR 290 (317)
Q Consensus 261 ~yPs~~er~eLA~~LgL-se~qVkiWFQNRR 290 (317)
..++.+|.+.|...+.= ..-.|..||-||+
T Consensus 57 g~Lt~~ei~~l~~~i~~~~~~~ip~w~lNr~ 87 (152)
T 3iz6_M 57 GELSAEEMDRLMAVVHNPRQFKVPDWFLNRK 87 (152)
T ss_dssp TTSCHHHHHHHHHHHHSCSSCCCCCCSCSCC
T ss_pred CcCCHHHHHHHHHHHHhhcccCcchhhhhhh
Confidence 36888888888877742 2345889999987
No 350
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=22.06 E-value=24 Score=29.36 Aligned_cols=42 Identities=5% Similarity=-0.175 Sum_probs=31.5
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
-++...+.|....|- .....+||++.|++...|-..|.+|..
T Consensus 33 Il~AA~~lf~~~G~~-~~t~~~IA~~aGvs~~tlY~~F~sK~~ 74 (217)
T 3hta_A 33 IIDAAIRVVGQKGIA-GLSHRTVAAEADVPLGSTTYHFATLDD 74 (217)
T ss_dssp HHHHHHHHHHHHTGG-GCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHcCcc-cCCHHHHHHHcCCCcchhhhcCCCHHH
Confidence 345555567777763 344778899999999999999999853
No 351
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=21.99 E-value=68 Score=24.57 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=28.8
Q ss_pred ccCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHcCCC--cccchhhc
Q psy3281 244 TYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCLT--ERQIKIWF 286 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~-----n~yPs~~er~eLA~~LgLs--e~qVkiWF 286 (317)
.++.+++..|+..|.. +.+++..+...+.+.+|+. ...|+.+|
T Consensus 3 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~ 52 (148)
T 1exr_A 3 QLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMI 52 (148)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4677888888888752 4477888887777777643 34455444
No 352
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=21.91 E-value=49 Score=26.00 Aligned_cols=42 Identities=10% Similarity=0.012 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhccc
Q psy3281 246 TRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 288 (317)
Q Consensus 246 T~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQN 288 (317)
+.++...+++....-.- ......+||..++++++.+..|+.-
T Consensus 2 ~~~~~~l~~~i~~~~~~-~p~~~~~la~~~~~~~~~~~~~l~~ 43 (121)
T 2pjp_A 2 SEEQQAIWQKAEPLFGD-EPWWVRDLAKETGTDEQAMRLTLRQ 43 (121)
T ss_dssp CHHHHHHHHHHGGGCSS-SCEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 45555555555432221 2235568999999999999999753
No 353
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=21.75 E-value=1.1e+02 Score=24.11 Aligned_cols=42 Identities=12% Similarity=-0.094 Sum_probs=28.7
Q ss_pred CCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCccc
Q psy3281 240 RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQ 281 (317)
Q Consensus 240 R~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~q 281 (317)
+.+..|+.+++..|...+.............|+..+||-..+
T Consensus 2 ~~~~~lt~~e~~~l~~~~~~~~~~~~~~~~~l~~~tG~R~~E 43 (170)
T 1aih_A 2 TELAFLYERDIYRLLAECDNSRNPDLGLIVRICLATGARWSE 43 (170)
T ss_dssp CCCCCCCHHHHHHHHHHHTTSSSTTHHHHHHHHHHHCCCHHH
T ss_pred CccccCCHHHHHHHHHHHhcccchhHHHHHHHHHHhCCcHHH
Confidence 445678999999998888765554444456667677765444
No 354
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=21.68 E-value=43 Score=26.30 Aligned_cols=41 Identities=10% Similarity=0.096 Sum_probs=30.9
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhccc-ch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN-RR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQN-RR 290 (317)
-++...+.|....|-. ....+||++.|++...|-..|.| |.
T Consensus 11 Il~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~~sK~ 52 (191)
T 1sgm_A 11 ILHTASRLSQLQGYHA-TGLNQIVKESGAPKGSLYHFFPNGKE 52 (191)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHHHCCCSCHHHHSTTTCHH
T ss_pred HHHHHHHHHHHcCccc-cCHHHHHHHHCCCchhHHHHccccHH
Confidence 3555556677766544 34678899999999999999997 64
No 355
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=21.67 E-value=26 Score=28.64 Aligned_cols=40 Identities=8% Similarity=0.127 Sum_probs=31.2
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
++.-.+.|....|-.. ...+||++.|+++..|-.+|.||-
T Consensus 20 l~aA~~lf~~~G~~~~-s~~~IA~~agvsk~tlY~yF~sKe 59 (199)
T 3crj_A 20 MQATYRALREHGYADL-TIQRIADEYGKSTAAVHYYYDTKD 59 (199)
T ss_dssp HHHHHHHHHHHTTTTC-CHHHHHHHHTSCHHHHHTTCSSHH
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHhCCChhHHhhhcCCHH
Confidence 4455556777777543 367889999999999999999984
No 356
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=21.60 E-value=26 Score=25.61 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=17.5
Q ss_pred HHHHHHHcCCCcccchhhcc
Q psy3281 268 RIEIAHALCLTERQIKIWFQ 287 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQ 287 (317)
+.++|+.+|++.+.|+.|-.
T Consensus 8 i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWER 27 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 56789999999999999954
No 357
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=21.58 E-value=42 Score=27.25 Aligned_cols=41 Identities=5% Similarity=-0.005 Sum_probs=31.9
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++...+.|....|-. ....+||++.|++...|-..|.||.
T Consensus 15 Il~aA~~lf~~~G~~~-~s~~~Ia~~Agvskgt~Y~yF~sKe 55 (197)
T 2f07_A 15 ILQAAIEVISEKGLDK-ASISDIVKKAGTAQGTFYLYFSSKN 55 (197)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHHHHCSSST
T ss_pred HHHHHHHHHHHhCccc-CCHHHHHHHhCCCchHHHHhCCCHH
Confidence 3555566677777654 3367889999999999999999985
No 358
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=21.53 E-value=78 Score=31.30 Aligned_cols=46 Identities=17% Similarity=0.191 Sum_probs=36.3
Q ss_pred CCcccCHHHHHHHHHHhh-----hCCCCCHHHHHHHHHHcCCC--cccchhhc
Q psy3281 241 GRQTYTRYQTLELEKEFH-----FNRYLTRRRRIEIAHALCLT--ERQIKIWF 286 (317)
Q Consensus 241 ~Rt~fT~~Ql~~LE~~F~-----~n~yPs~~er~eLA~~LgLs--e~qVkiWF 286 (317)
.+..|+.+++..|++.|. .+.+++..|...+.+.||+. +..|+..|
T Consensus 292 s~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf 344 (440)
T 3u0k_A 292 TRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMI 344 (440)
T ss_dssp BCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred hHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 577899999999999995 45689999999888888754 45555544
No 359
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=21.52 E-value=90 Score=24.82 Aligned_cols=39 Identities=15% Similarity=0.050 Sum_probs=28.8
Q ss_pred Ccc-cCHHHHHHHHHHhh-----hCCCCCHHHHH-----HHHHHcCCCcc
Q psy3281 242 RQT-YTRYQTLELEKEFH-----FNRYLTRRRRI-----EIAHALCLTER 280 (317)
Q Consensus 242 Rt~-fT~~Ql~~LE~~F~-----~n~yPs~~er~-----eLA~~LgLse~ 280 (317)
.+. ++.+++..|+..|. .+.+++..|.. .+.+.+|+...
T Consensus 10 ~~~~~s~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~~ 59 (195)
T 1qv0_A 10 KTDFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPE 59 (195)
T ss_dssp SCCTTCHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTHHHHTTCCHH
T ss_pred CcccCCHHHHHHHHHHHhHcCCCCCCcCcHHHHHHHHHHHHHHHcCCCcc
Confidence 344 49999999999995 35588988887 55667777543
No 360
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=21.44 E-value=14 Score=29.62 Aligned_cols=41 Identities=12% Similarity=0.030 Sum_probs=29.2
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
+....+.|....|- .....+||++.|++...|-.+|.||-.
T Consensus 20 l~aA~~l~~~~G~~-~~t~~~IA~~agvs~~t~Y~~F~sK~~ 60 (191)
T 4aci_A 20 LEGARRCFAEHGYE-GATVRRLEEATGKSRGAIFHHFGDKEN 60 (191)
T ss_dssp HHHHHHHHHHHHHH-HCCHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHhCcc-cCCHHHHHHHHCCCchHHHHHCCCHHH
Confidence 44444556555543 233678899999999999999998753
No 361
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=21.27 E-value=1.4e+02 Score=22.23 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=28.0
Q ss_pred cccCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHcCCCc
Q psy3281 243 QTYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCLTE 279 (317)
Q Consensus 243 t~fT~~Ql~~LE~~F~~-----n~yPs~~er~eLA~~LgLse 279 (317)
..++.+++..|++.|.. +.+++..+...+...+|+..
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~ 44 (153)
T 3ox6_A 3 RSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMP 44 (153)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHTTCCC
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCC
Confidence 35788888889888853 56888888888877776533
No 362
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=21.09 E-value=70 Score=23.93 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=29.4
Q ss_pred cccCHHHHHHHHHHhhh-----CCCCCHHHHHHHHHHcCCC--cccchhhc
Q psy3281 243 QTYTRYQTLELEKEFHF-----NRYLTRRRRIEIAHALCLT--ERQIKIWF 286 (317)
Q Consensus 243 t~fT~~Ql~~LE~~F~~-----n~yPs~~er~eLA~~LgLs--e~qVkiWF 286 (317)
+.++.+++..|+..|.. +.+++..+...+...+|+. ...|...|
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~ 53 (147)
T 4ds7_A 3 QNLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLM 53 (147)
T ss_dssp -CCCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 35788888888888853 4578888888777777643 33344444
No 363
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=21.02 E-value=7.4 Score=31.57 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=26.9
Q ss_pred HHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 254 EKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 254 E~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
.+.|....|-. ....+||++.|+++..|-.+|.||-
T Consensus 28 ~~lf~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~sKe 63 (212)
T 3loc_A 28 LDTFSQFGFHG-TRLEQIAELAGVSKTNLLYYFPSKE 63 (212)
T ss_dssp HHHHHHHHHHH-CCHHHHHHHHTSCHHHHHHHSSSHH
T ss_pred HHHHHHhCccc-CCHHHHHHHHCcCHHHHhhhCCCHH
Confidence 34465555432 3367889999999999999999973
No 364
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=20.94 E-value=40 Score=27.34 Aligned_cols=41 Identities=10% Similarity=0.010 Sum_probs=31.2
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
++.-.+.|....|-.. ...+||++.|+++..|-.+|.||..
T Consensus 17 l~aA~~lf~~~G~~~~-s~~~IA~~agvs~~t~Y~~F~sK~~ 57 (212)
T 2ras_A 17 VDVAQAIVEERGGAGL-TLSELAARAGISQANLSRYFETRED 57 (212)
T ss_dssp HHHHHHHHHHHTSSCC-CHHHHHHHHTSCHHHHTTTCSSHHH
T ss_pred HHHHHHHHHHhCcccC-cHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 4444555777776543 4778899999999999999999853
No 365
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=20.92 E-value=63 Score=25.73 Aligned_cols=47 Identities=15% Similarity=0.107 Sum_probs=29.6
Q ss_pred ccCCCCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHc-CCCcccchhhcc
Q psy3281 237 ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL-CLTERQIKIWFQ 287 (317)
Q Consensus 237 krRR~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~L-gLse~qVkiWFQ 287 (317)
++..+|..||.++...|......... + =.+||..+ +=+.++++.-|.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~---W~~Ia~~~~~Rt~~qcr~Rw~ 53 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS-D---WKMIAATFPNRNARQCRDRWK 53 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT-C---HHHHHHTCTTCCHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-C---HHHHHHHcCCCCHHHHHHHHh
Confidence 44566778999999999888766443 2 34556666 455555554433
No 366
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Probab=20.92 E-value=36 Score=23.55 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=23.5
Q ss_pred HHHHHhh-----hCCCCCHHHHHHHHHHcC----CCcccchh
Q psy3281 252 ELEKEFH-----FNRYLTRRRRIEIAHALC----LTERQIKI 284 (317)
Q Consensus 252 ~LE~~F~-----~n~yPs~~er~eLA~~Lg----Lse~qVki 284 (317)
.|+..|. .+.+++..+...+...+| ++...|..
T Consensus 8 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 49 (83)
T 1yx7_A 8 ELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKE 49 (83)
T ss_dssp HHHHHHHHHSSSCSSSCSHHHHHHHHHHHTTCTTTTTTTTHH
T ss_pred HHHHHHHHHCCCCCCcCcHHHHHHHHHHHccccCCCHHHHHH
Confidence 3555553 345899999988888877 67777777
No 367
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=20.91 E-value=24 Score=26.67 Aligned_cols=28 Identities=4% Similarity=-0.062 Sum_probs=19.3
Q ss_pred CCCCCHHHHHHHHHHcCCCcccchhhcc
Q psy3281 260 NRYLTRRRRIEIAHALCLTERQIKIWFQ 287 (317)
Q Consensus 260 n~yPs~~er~eLA~~LgLse~qVkiWFQ 287 (317)
+.+++..|...+.+.+|++...|..+|.
T Consensus 25 dG~Is~~el~~~l~~~~l~~~~l~~i~~ 52 (99)
T 1qjt_A 25 TGRVLALDAAAFLKKSGLPDLILGKIWD 52 (99)
T ss_dssp SSCCCSHHHHHHHHTSSSCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3577777777777777777777766653
No 368
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=20.87 E-value=9.1 Score=26.29 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=32.1
Q ss_pred cCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhccc
Q psy3281 245 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 288 (317)
Q Consensus 245 fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQN 288 (317)
++.+--..|+.+..+..-++.+...+.|.+|||...-|..+|+.
T Consensus 4 wseeverklkefvrrhqeitqetlheyaqklglnqqaieqffre 47 (52)
T 1y66_A 4 WSEEVERKLKEFVRRHQEITQETLHEYAQKLGLNQQAIEQFFRE 47 (52)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 34444455555555555677788889999999999999999864
No 369
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=20.84 E-value=27 Score=25.72 Aligned_cols=32 Identities=9% Similarity=-0.039 Sum_probs=21.7
Q ss_pred HHhhhCCCCCHHHHHHHHHHcCCCcccchhhc
Q psy3281 255 KEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 286 (317)
Q Consensus 255 ~~F~~n~yPs~~er~eLA~~LgLse~qVkiWF 286 (317)
.++..+.--......+||++||++.+.|+...
T Consensus 21 ~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L 52 (77)
T 1qgp_A 21 KFLEELGEGKATTAHDLSGKLGTPKKEINRVL 52 (77)
T ss_dssp HHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 44444552233446789999999999887655
No 370
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=20.84 E-value=15 Score=29.06 Aligned_cols=41 Identities=7% Similarity=0.041 Sum_probs=30.1
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
++...+.|....|- .....+||++.|++...|-.+|.+|..
T Consensus 20 l~aa~~lf~~~G~~-~~ti~~Ia~~agvs~~t~Y~~F~sK~~ 60 (156)
T 3ljl_A 20 MDAVVDQLLRLGYD-KMSYTTLSQQTGVSRTGISHHFPKKTD 60 (156)
T ss_dssp HHHHHHHHHHTHHH-HCCHHHHHHHHTCCHHHHHHHCSSTHH
T ss_pred HHHHHHHHHHhChh-hcCHHHHHHHHCCCHHHHHHHCCCHHH
Confidence 44445556666653 234678899999999999999999753
No 371
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=20.78 E-value=33 Score=24.98 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=20.3
Q ss_pred HHHHHHHcCCCcccchhhcccch
Q psy3281 268 RIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 268 r~eLA~~LgLse~qVkiWFQNRR 290 (317)
.++||+.+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~E~G~~ 52 (86)
T 3eus_A 30 QADLAERLDKPQSFVAKVETRER 52 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 46799999999999999998775
No 372
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=20.77 E-value=16 Score=30.53 Aligned_cols=41 Identities=10% Similarity=-0.022 Sum_probs=30.6
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
++.-.+.|....|-. ....+||++.|++...|-..|.+|..
T Consensus 46 l~aA~~lf~~~G~~~-~t~~~IA~~Agvs~~t~Y~~F~sK~~ 86 (225)
T 2id3_A 46 LLAAGDALAADGFDA-LDLGEIARRAGVGKTTVYRRWGTPGG 86 (225)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHHCSHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHHCCCHHHHHHHCCCHHH
Confidence 444444576666543 45778999999999999999999754
No 373
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1
Probab=20.74 E-value=21 Score=30.61 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=5.9
Q ss_pred cchhhcccchhhhh
Q psy3281 281 QIKIWFQNRRMKWK 294 (317)
Q Consensus 281 qVkiWFQNRRaK~K 294 (317)
...||-.++...++
T Consensus 101 ~F~V~a~D~~t~~~ 114 (159)
T 1op4_A 101 KFLIYAQDKETQEK 114 (159)
T ss_dssp EEEEEEEETTTTEE
T ss_pred EEEEEEEcCCCceE
Confidence 33444445444333
No 374
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=20.62 E-value=32 Score=25.83 Aligned_cols=20 Identities=10% Similarity=0.169 Sum_probs=16.6
Q ss_pred HHHHHHHHcCCCcccchhhc
Q psy3281 267 RRIEIAHALCLTERQIKIWF 286 (317)
Q Consensus 267 er~eLA~~LgLse~qVkiWF 286 (317)
...+||++||++.+.|+..+
T Consensus 29 t~~eLA~~Lgvsr~tV~~~L 48 (81)
T 1qbj_A 29 TAHDLSGKLGTPKKEINRVL 48 (81)
T ss_dssp CHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 35689999999999987765
No 375
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=20.61 E-value=3.1e+02 Score=21.49 Aligned_cols=47 Identities=13% Similarity=0.008 Sum_probs=34.4
Q ss_pred CCcccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHc-CCCcccchhhccc
Q psy3281 241 GRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL-CLTERQIKIWFQN 288 (317)
Q Consensus 241 ~Rt~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~L-gLse~qVkiWFQN 288 (317)
+-..+|.+.-+++...|+... ++.+....||++| +-++.+|+.=|+-
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G-~s~~tFa~iA~~L~Nks~nqV~~RFq~ 79 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQG-AQPHTFSVISQQLGNKTPVEVSHRFRE 79 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTT-SCTTTHHHHHHHHSSCCHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcC-CChhHHHHHHHHHccCCHHHHHHHHHH
Confidence 345688888888878887654 3334456699999 5999999987753
No 376
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=20.58 E-value=48 Score=32.54 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=37.8
Q ss_pred ccCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhh
Q psy3281 244 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 294 (317)
Q Consensus 244 ~fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~K 294 (317)
.++..+..+|...|-.... .....++||..|||+...|+.+...-+.|.|
T Consensus 375 ~L~ereR~VI~LRygL~~~-e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred hCCHHHHHHHHHHHhccCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4677788888777643211 2245788999999999999999988777777
No 377
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=20.56 E-value=1e+02 Score=21.34 Aligned_cols=37 Identities=14% Similarity=0.059 Sum_probs=25.8
Q ss_pred cCHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhc
Q psy3281 245 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 286 (317)
Q Consensus 245 fT~~Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWF 286 (317)
+...+...|+..+..+ - .+.+.|+.|||+...+..|.
T Consensus 18 l~~~Er~~I~~aL~~~--g---n~~~aA~~LGIsr~tL~rkl 54 (61)
T 1g2h_A 18 IGFYEAQVLKLFYAEY--P---STRKLAQRLGVSHTAIANKL 54 (61)
T ss_dssp CSHHHHHHHHHHHHHS--C---SHHHHHHHTTSCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--C---CHHHHHHHhCCCHHHHHHHH
Confidence 4455677777777776 2 35577999999988765443
No 378
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=20.52 E-value=37 Score=26.51 Aligned_cols=41 Identities=12% Similarity=0.018 Sum_probs=30.8
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchh
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRa 291 (317)
+....+.|....|- .....+||++.|++...|-..|.+|..
T Consensus 10 l~aa~~l~~~~G~~-~~t~~~Ia~~agvs~~t~Y~~F~sK~~ 50 (170)
T 3egq_A 10 IEAALRLYMKKPPH-EVSIEEIAREAKVSKSLIFYHFESKQK 50 (170)
T ss_dssp HHHHHHHHTTSCGG-GCCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhcCCc-cCcHHHHHHHhCCCchhHHHHcCCHHH
Confidence 44445557767664 344778899999999999999998753
No 379
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=20.49 E-value=36 Score=24.50 Aligned_cols=24 Identities=8% Similarity=0.021 Sum_probs=21.0
Q ss_pred HHHHHHHHcCCCcccchhhcccch
Q psy3281 267 RRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 267 er~eLA~~LgLse~qVkiWFQNRR 290 (317)
...+||+.+|++...|-.||.+++
T Consensus 11 t~~diA~~aGVS~sTVSr~ln~~~ 34 (67)
T 2l8n_A 11 TMKDVALKAKVSTATVSRALMNPD 34 (67)
T ss_dssp CHHHHHHHTTCCHHHHHHTTTCCC
T ss_pred CHHHHHHHHCCCHHHHHHHHcCCC
Confidence 367899999999999999998874
No 380
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=20.36 E-value=22 Score=28.41 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=28.2
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
++.-.+.|....|- .....+||++.|++...|-..|.||.
T Consensus 17 l~aA~~lf~~~G~~-~~ti~~IA~~agvs~~t~Y~~F~sK~ 56 (204)
T 3eup_A 17 IESTAPVFNVKGLA-GTSLTDLTEATNLTKGSIYGNFENKE 56 (204)
T ss_dssp HHHHHHHHHHHHHH-HCCHHHHHHHHTCCHHHHTTTSSSHH
T ss_pred HHHHHHHHHHcCcc-cCCHHHHHHHhCCCcHHHHHhCCCHH
Confidence 33334445555542 23467899999999999999999985
No 381
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=20.24 E-value=48 Score=26.81 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=31.5
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 250 TLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 250 l~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
++.-.+.|....|-. ....+||++.|+++..|-..|.||-
T Consensus 18 l~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~sKe 57 (197)
T 2hyt_A 18 LATARKVFSERGYAD-TSMDDLTAQASLTRGALYHHFGDKK 57 (197)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTCCTTHHHHHHSSHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 555556687777754 3477889999999999999999874
No 382
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=20.18 E-value=25 Score=28.76 Aligned_cols=41 Identities=17% Similarity=0.041 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccch
Q psy3281 249 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290 (317)
Q Consensus 249 Ql~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRR 290 (317)
-++...+.|....|-. ....+||++.|++...|-..|.||-
T Consensus 17 Il~aA~~l~~e~G~~~-~s~~~IA~~agvs~~t~Y~hF~~Ke 57 (198)
T 3cjd_A 17 LIDLAEAQIEAEGLAS-LRARELARQADCAVGAIYTHFQDLN 57 (198)
T ss_dssp HHHHHHHHHHHHCGGG-CCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHhCChhh-cCHHHHHHHhCCCccHHHHHhCCHH
Confidence 3555556677766633 4467889999999999999999984
No 383
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=20.04 E-value=22 Score=36.15 Aligned_cols=12 Identities=67% Similarity=1.437 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC
Q psy3281 152 HHQHHHMNHHPH 163 (317)
Q Consensus 152 hh~hHH~~HH~h 163 (317)
||||||.-||||
T Consensus 574 ~~~~~~~~~~~~ 585 (587)
T 3jrx_A 574 HHHHHHLEHHHH 585 (587)
T ss_dssp ------------
T ss_pred hcccchhhcccc
Confidence 344444444433
No 384
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=20.04 E-value=48 Score=27.02 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=20.7
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHcCCCcccchhhcccchhhhhhhhc
Q psy3281 251 LELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 298 (317)
Q Consensus 251 ~~LE~~F~~n~yPs~~er~eLA~~LgLse~qVkiWFQNRRaK~KK~~k 298 (317)
.+++-.|+.|+||+.+--.. | -+|||.|||+..+
T Consensus 16 RiIkiLyQSNPyP~peGTRq-a-------------RRNRRRRWR~RQr 49 (115)
T 2x7l_M 16 RLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQR 49 (115)
T ss_dssp HHHHHHHHSSCCCCCCCCTT-T-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCchh-h-------------hHhHHHHHHHHHH
Confidence 44455578899987541111 1 2588888887644
Done!