RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3281
(317 letters)
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain.
Length = 57
Score = 106 bits (266), Expect = 3e-29
Identities = 33/57 (57%), Positives = 40/57 (70%)
Query: 239 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 295
+R R T+T Q ELEKEF NRY + R E+A L LTERQ+K+WFQNRR KWK+
Sbjct: 1 RRKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGLTERQVKVWFQNRRAKWKR 57
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in
the transcriptional regulation of key eukaryotic
developmental processes; may bind to DNA as monomers or
as homo- and/or heterodimers, in a sequence-specific
manner.
Length = 59
Score = 93.1 bits (232), Expect = 3e-24
Identities = 32/59 (54%), Positives = 38/59 (64%)
Query: 239 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 297
+R R +T Q ELEKEF N Y +R R E+A L LTERQ+KIWFQNRR K K+
Sbjct: 1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
>gnl|CDD|197696 smart00389, HOX, Homeodomain. DNA-binding factors that are
involved in the transcriptional regulation of key
developmental processes.
Length = 57
Score = 92.3 bits (230), Expect = 5e-24
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 238 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 294
++R R ++T Q ELEKEF N Y +R R E+A L L+ERQ+K+WFQNRR KWK
Sbjct: 1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor
[Transcription].
Length = 156
Score = 54.8 bits (132), Expect = 3e-09
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 239 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 298
K R+ T Q + LE+EF N Y + RI+++ L + + ++IWFQN+R K KK+
Sbjct: 52 KSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRS 111
Query: 299 SKD 301
K
Sbjct: 112 GKV 114
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 52.8 bits (127), Expect = 1e-07
Identities = 37/188 (19%), Positives = 45/188 (23%), Gaps = 35/188 (18%)
Query: 48 PRQVHHYGQVPNNGQPVHGMPYPRFPPYDRMDIRNAAYYGAHEGGMEQYPRPDSPSMGHM 107
Q+ Q P QP + PP R AA+ Q P+ P
Sbjct: 160 EAQLQQRQQAPQLPQPPQQVLPQGMPP------RQAAFP--------QQGPPEQPPGYPQ 205
Query: 108 GPQNGHQTPVVYASCKLQAAVGNGIIPGPESPNDLVDPTLNNHHHHQHHHMNHHPHPHPQ 167
PQ + + P+ P Q + P
Sbjct: 206 PPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQ-------------QPPPLQQPQFPGLS 252
Query: 168 QQQPQQPPPQHMMYAQQPPPQHHQVVVN--------HQQTPPNQPPSQPPNQPPNQQPNN 219
QQ P PP Q P PQ N Q PP Q P P Q
Sbjct: 253 QQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQ 312
Query: 220 TSASLPSP 227
P
Sbjct: 313 GQQRGPQF 320
Score = 49.8 bits (119), Expect = 1e-06
Identities = 39/182 (21%), Positives = 52/182 (28%), Gaps = 7/182 (3%)
Query: 98 RPDSPSMGHMGPQNGHQTPVVYASCKLQAAVGNGIIPGPESPNDLVDPTLNNHHHHQHHH 157
P P G + G P+ + V P Q
Sbjct: 169 APQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPA 228
Query: 158 MNHHPHPHPQQQQP-QQPP----PQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQP 212
P PQQ P QQP Q M PPQ Q Q PP Q P
Sbjct: 229 QPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGL 288
Query: 213 PNQQPNNTSASLPSPLYPWMRSQFERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIA 272
P Q L P ++ ++RG Q R Q ++L ++ +R +
Sbjct: 289 PQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQ--FREQLVQLSQQQREALSQEEAKRAKRR 346
Query: 273 HA 274
H
Sbjct: 347 HK 348
Score = 33.6 bits (77), Expect = 0.15
Identities = 24/102 (23%), Positives = 28/102 (27%), Gaps = 7/102 (6%)
Query: 136 PESPNDL-VDPTLNNHHHHQHHHMNHHPHPHPQQQQPQQPP------PQHMMYAQQPPPQ 188
PE DL DP+L P PQ Q P Q + QQ P
Sbjct: 113 PEYIPDLQPDPSLWGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQL 172
Query: 189 HHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSASLPSPLYP 230
Q P + + P PP Q P P
Sbjct: 173 PQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQV 214
Score = 31.3 bits (71), Expect = 0.78
Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 167 QQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSASLPS 226
+QQ PQ P P + Q PP+ Q P Q P + P P + P
Sbjct: 166 RQQAPQLPQPPQQVLPQGMPPR--------QAAFPQQGPPEQPPGYPQPPQGHPEQVQPQ 217
Query: 227 PLYP 230
P
Sbjct: 218 QFLP 221
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 50.1 bits (119), Expect = 7e-07
Identities = 32/99 (32%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 127 AVGNGIIPGP--ESPNDLVDPTLNNHHHHQHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQ 184
A G I P P E+P + T + H H+H H P P QQ Q P Q Q
Sbjct: 167 ASGTYIPPNPPREAPAPGLPKTFTSSHGHRHRHA-----PKPTQQPTVQNPAQQPT-VQN 220
Query: 185 PPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSAS 223
P Q Q P QP Q P Q P Q S
Sbjct: 221 PAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKRS 259
Score = 29.6 bits (66), Expect = 2.4
Identities = 14/58 (24%), Positives = 15/58 (25%)
Query: 134 PGPESPNDLVDPTLNNHHHHQHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPPQHHQ 191
P N PT+ N P QQ PQ P Q Q Q
Sbjct: 205 QQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKRSREQ 262
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 41.1 bits (96), Expect = 8e-04
Identities = 19/69 (27%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 162 PHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTS 221
P Q + P PQ A PP Q Q PP PP +P +
Sbjct: 2897 SFALPPDQPERPPQPQ----APPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA-PTTDPAG 2951
Query: 222 ASLPSPLYP 230
A PS P
Sbjct: 2952 AGEPSGAVP 2960
Score = 39.9 bits (93), Expect = 0.002
Identities = 18/71 (25%), Positives = 22/71 (30%), Gaps = 5/71 (7%)
Query: 162 PHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTS 221
P Q ++P QP P PQ Q PP PP P P P
Sbjct: 2899 ALPPDQPERPPQPQAP-----PPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAG 2953
Query: 222 ASLPSPLYPWM 232
+ PW+
Sbjct: 2954 EPSGAVPQPWL 2964
Score = 33.4 bits (76), Expect = 0.20
Identities = 18/67 (26%), Positives = 23/67 (34%)
Query: 164 PHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSAS 223
P ++ +P + PP + Q PP QP QPP P Q P
Sbjct: 2879 ARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPR 2938
Query: 224 LPSPLYP 230
PL P
Sbjct: 2939 PQPPLAP 2945
Score = 31.8 bits (72), Expect = 0.52
Identities = 17/67 (25%), Positives = 23/67 (34%)
Query: 164 PHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSAS 223
P + P +PP + + + Q P QP + PP QP Q P
Sbjct: 2871 PAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQ 2930
Query: 224 LPSPLYP 230
P P P
Sbjct: 2931 PPPPPPP 2937
Score = 28.0 bits (62), Expect = 9.9
Identities = 15/70 (21%), Positives = 19/70 (27%), Gaps = 12/70 (17%)
Query: 166 PQQQQPQQP-----PPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNT 220
P + +P PP + PP+QP P QP P
Sbjct: 2867 PSRSPAAKPAAPARPPVRRLARPAVSRSTES-----FALPPDQPE--RPPQPQAPPPPQP 2919
Query: 221 SASLPSPLYP 230
P P P
Sbjct: 2920 QPQPPPPPQP 2929
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 40.8 bits (95), Expect = 0.001
Identities = 27/88 (30%), Positives = 28/88 (31%), Gaps = 6/88 (6%)
Query: 144 DPTLNNHHHHQHHHMNHHPHPHPQQQQPQQP--PPQHMMYAQQPPPQHHQVVVNHQQTPP 201
P Q+ P PQ QQPQQP P QQP Q Q P
Sbjct: 754 QPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAP 813
Query: 202 NQPPSQPPN----QPPNQQPNNTSASLP 225
QP QP QQP A P
Sbjct: 814 QPQYQQPQQPVAPQPQYQQPQQPVAPQP 841
Score = 37.4 bits (86), Expect = 0.011
Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 19/125 (15%)
Query: 133 IPGPESPNDLVDPTLNNHHHHQHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPPQHHQV 192
+PGP++ ++ P P +PQQ Q QP Q+ QQP
Sbjct: 363 VPGPQTGEPVIAPA---------------PEGYPQQSQYAQPAVQYNEPLQQPVQPQQPY 407
Query: 193 VVNHQQTPPNQPPSQPPNQPPNQQPNNTSASLPSPLYPWMRSQFERKRGRQTYTRYQTLE 252
+ P QP P + P QQP P+P P + ++ + + T+ T +
Sbjct: 408 YAPAAEQPAQQPYYAPAPEQPAQQP----YYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQ 463
Query: 253 LEKEF 257
E+ +
Sbjct: 464 TEQTY 468
Score = 35.4 bits (81), Expect = 0.040
Identities = 34/154 (22%), Positives = 43/154 (27%), Gaps = 16/154 (10%)
Query: 58 PNNGQPVHGMPYPRFPPYDRMDIRNAAYYGAHEGGMEQYPRPDSPSMGHMGPQNGHQTPV 117
P G+PV +P + Y Q P + Q P
Sbjct: 366 PQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPL-----QQPVQPQQPYYAPAAEQPAQQPY 420
Query: 118 VYASCKLQAAVGNGIIPGPESPNDLVDPTLNNHHHHQHHHMNHHPHPHPQQ--QQPQQPP 175
YA Q A P PE P Q +Q QQP
Sbjct: 421 -YAPAPEQPAQQPYYAPAPEQPV----AGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQE 475
Query: 176 PQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPP 209
P + QQP P Q VV + P++PP
Sbjct: 476 PLY----QQPQPVEQQPVVEPEPVVEETKPARPP 505
Score = 34.3 bits (78), Expect = 0.083
Identities = 32/164 (19%), Positives = 45/164 (27%), Gaps = 14/164 (8%)
Query: 87 GAHEGGMEQYPRPDS--PSMGHMGPQNGHQTPVVYASCKLQAAVGNGIIPGPESPNDLVD 144
G G P P+ + P + P+ Q P +
Sbjct: 365 GPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPL------QQPVQPQQPYYAPAAEQPAQQ 418
Query: 145 PTLNNHHHHQHHHMNHHPHP-HPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQ 203
P + P P P Q Q +A Q Q Q P
Sbjct: 419 PYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLY 478
Query: 204 PPSQPPNQPPNQQP----NNTSASLPSPLYPWMRSQFERKRGRQ 243
QP Q P +P T + P PLY + + +R R R+
Sbjct: 479 QQPQPVEQQPVVEPEPVVEETKPARP-PLYYFEEVEEKRARERE 521
Score = 32.4 bits (73), Expect = 0.35
Identities = 23/88 (26%), Positives = 27/88 (30%)
Query: 162 PHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTS 221
P P QQ Q PQ Q P QQ QP Q P QP QP
Sbjct: 747 PIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQ 806
Query: 222 ASLPSPLYPWMRSQFERKRGRQTYTRYQ 249
P P + + + Y + Q
Sbjct: 807 PQQPVAPQPQYQQPQQPVAPQPQYQQPQ 834
Score = 30.4 bits (68), Expect = 1.5
Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 5/115 (4%)
Query: 99 PDSPSMGHMGPQNGHQTPVVYASCKLQAAVGNGIIPGPESPNDLVDPTLNNHHHHQHHHM 158
P + PQ +Q P + + Q + P + Q
Sbjct: 751 PVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQP 810
Query: 159 NHHPHPHPQQQQPQQPPPQHMMYAQQPPPQH-----HQVVVNHQQTPPNQPPSQP 208
+ Q QQP P PQ+ Q PQ H +++ + + P P+ P
Sbjct: 811 VAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTP 865
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 39.3 bits (92), Expect = 0.002
Identities = 17/74 (22%), Positives = 19/74 (25%), Gaps = 2/74 (2%)
Query: 162 PHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPP--NQPPNQQPNN 219
P P Q P P Q TP P + PP P
Sbjct: 51 PSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGP 110
Query: 220 TSASLPSPLYPWMR 233
T + P LYP
Sbjct: 111 TIQTEPGQLYPVQV 124
Score = 37.0 bits (86), Expect = 0.009
Identities = 26/126 (20%), Positives = 33/126 (26%), Gaps = 8/126 (6%)
Query: 95 QYPRPDSPSMGHMGPQNGHQTPVVYASCKLQAAVGNGIIPGPESPNDLVDPTLNNHHHHQ 154
Q P + G Q H TP S + GP P +P Q
Sbjct: 68 QPPPTQALQALPAGDQQQHNTP--TGSPAANPPATFALPAGPAGPTIQTEPGQLYPV--Q 123
Query: 155 HHHMNHHPHPHPQQQQP-QQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPP 213
M + QP QQ Q QQ + QQ + Q P
Sbjct: 124 VPVMVTQNPANSPLDQPAQQRALQQ---LQQRYGAPASGQLPSQQQSAQKNDESQLQQQP 180
Query: 214 NQQPNN 219
N +
Sbjct: 181 NGETPP 186
Score = 36.6 bits (85), Expect = 0.014
Identities = 15/83 (18%), Positives = 18/83 (21%), Gaps = 10/83 (12%)
Query: 153 HQHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVV--------NHQQTPPNQP 204
Q P P Q Q P + QT P Q
Sbjct: 60 AQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPTIQTEPGQL 119
Query: 205 PSQPPNQPPNQQPNNTSASLPSP 227
P P N ++ L P
Sbjct: 120 Y--PVQVPVMVTQNPANSPLDQP 140
Score = 34.7 bits (80), Expect = 0.046
Identities = 27/162 (16%), Positives = 36/162 (22%), Gaps = 23/162 (14%)
Query: 42 DPSMYDPRQVHHYGQVPNNGQPVHGMPYPRFPPYDRMDIRNAAYYGAHEGGMEQYPRPDS 101
DPS P V Q+P + P N + P
Sbjct: 50 DPSPQAPPPV---AQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAG 106
Query: 102 PSMGHMGPQNGHQTPVVYASCKLQAAVGNGIIPGPESPNDLVDPTLNNHHHHQHHHMNHH 161
P+ + + G PV Q V P + L P
Sbjct: 107 PAGPTIQTEPGQLYPV-------QVPVMVTQNPAN---SPLDQPAQQRALQQLQQRYG-- 154
Query: 162 PHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQ 203
Q P Q Q + +TPP Q
Sbjct: 155 -----APASGQLPSQQQSAQKNDESQLQQQ---PNGETPPQQ 188
Score = 28.2 bits (63), Expect = 6.7
Identities = 11/63 (17%), Positives = 14/63 (22%), Gaps = 4/63 (6%)
Query: 167 QQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQP----PNQPPNQQPNNTSA 222
Q Q P A P Q Q Q P+ Q + +
Sbjct: 118 QLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQ 177
Query: 223 SLP 225
P
Sbjct: 178 QQP 180
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 39.2 bits (92), Expect = 0.002
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 157 HMNHHPHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQ 216
H P+ Q +QP Q PP+ + P P QP QP + P QQ
Sbjct: 90 HQYQPPYASAQPRQPVQQPPEAQV---PPQHAPRPAQP--APQPVQQPAYQPQPEQPLQQ 144
Query: 217 PNNTSASLP 225
P + +
Sbjct: 145 PVSPQVAPA 153
Score = 32.7 bits (75), Expect = 0.23
Identities = 16/56 (28%), Positives = 17/56 (30%)
Query: 162 PHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQP 217
P P+ QP P Q Y QP Q V P S P QP
Sbjct: 115 PQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQP 170
Score = 31.5 bits (72), Expect = 0.54
Identities = 20/113 (17%), Positives = 30/113 (26%), Gaps = 2/113 (1%)
Query: 109 PQNGHQTPVVYASCKLQAAVGNGIIPGPESPNDLVDPTLNNHH-HHQHHHMNHHPHPHPQ 167
P HQ YAS + + V P P Q + P Q
Sbjct: 86 PSPQHQYQPPYASAQPRQPVQQPP-EAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQ 144
Query: 168 QQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNT 220
PQ P +++ P Q P +P ++P +
Sbjct: 145 PVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKPKRKEA 197
Score = 28.5 bits (64), Expect = 5.3
Identities = 15/71 (21%), Positives = 18/71 (25%), Gaps = 4/71 (5%)
Query: 160 HHPHPHPQQQQPQQPPPQHMMYAQQPP---PQHHQVVVNHQQTPPNQPPSQPPNQPPNQQ 216
P Q P Q Q P PQ Q + P P QP + P
Sbjct: 106 QQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVS-PQVAPAPQPVHSAPQPA 164
Query: 217 PNNTSASLPSP 227
+ P
Sbjct: 165 QQAFQPAEPVA 175
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional.
Length = 256
Score = 37.3 bits (87), Expect = 0.005
Identities = 14/57 (24%), Positives = 18/57 (31%)
Query: 165 HPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTS 221
QQ Q QQPP PP+ V Q P + P + P +
Sbjct: 121 IQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEA 177
Score = 35.8 bits (83), Expect = 0.020
Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 168 QQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSASLPSP 227
+QQP Q + Y +Q P V QQ QPP+ P P T+A +
Sbjct: 96 RQQPTQLS--EVPYNEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQ 153
Query: 228 LYPWMRSQFERKRGRQTYTRYQTLELEKE 256
+R+Q + E EKE
Sbjct: 154 TPAPVRTQPAAPVTQAVEAPKVEAEKEKE 182
Score = 34.2 bits (79), Expect = 0.064
Identities = 12/55 (21%), Positives = 15/55 (27%), Gaps = 4/55 (7%)
Query: 162 PHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQ 216
P Q QP PP Q P V Q P + P ++
Sbjct: 130 PPATTAQPQPVTPPRQT----TAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEKE 180
Score = 31.9 bits (73), Expect = 0.31
Identities = 11/52 (21%), Positives = 12/52 (23%), Gaps = 6/52 (11%)
Query: 164 PHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQ 215
QP P PP Q V P P+ P Q
Sbjct: 127 QQQPPATTAQPQP------VTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEA 172
Score = 30.0 bits (68), Expect = 1.3
Identities = 14/61 (22%), Positives = 18/61 (29%)
Query: 166 PQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSASLP 225
P +Q Q P + QQ Q Q + P QP P T + P
Sbjct: 106 PYNEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAP 165
Query: 226 S 226
Sbjct: 166 V 166
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 36.8 bits (86), Expect = 0.014
Identities = 21/83 (25%), Positives = 25/83 (30%), Gaps = 8/83 (9%)
Query: 163 HPHPQQQQPQQPPPQ--HMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNT 220
HP +P+ PP AQ V P P S P P P T
Sbjct: 360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETT 419
Query: 221 SASLPSPLYPWMRSQFERKRGRQ 243
S L R Q +R +G
Sbjct: 420 SQLLA------ARQQLQRAQGAT 436
Score = 30.2 bits (69), Expect = 1.7
Identities = 12/65 (18%), Positives = 17/65 (26%), Gaps = 2/65 (3%)
Query: 164 PHPQQQQPQQPPPQHMMYAQQPPPQH-HQVVVNHQQTPPNQP-PSQPPNQPPNQQPNNTS 221
P P PQQ P + Q+ T + P+ P
Sbjct: 400 PPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERL 459
Query: 222 ASLPS 226
AS+
Sbjct: 460 ASVRP 464
Score = 29.1 bits (66), Expect = 4.2
Identities = 11/75 (14%), Positives = 12/75 (16%), Gaps = 11/75 (14%)
Query: 164 PHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQT--PPNQPPSQPPN---------QP 212
P Q Q V P P P Q
Sbjct: 369 EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQ 428
Query: 213 PNQQPNNTSASLPSP 227
+ T A P
Sbjct: 429 LQRAQGATKAKKSEP 443
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421). This
family represents a conserved region approximately 350
residues long within a number of plant proteins of
unknown function.
Length = 357
Score = 36.1 bits (83), Expect = 0.019
Identities = 27/81 (33%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 152 HHQHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPPQHH---QVVVNHQQTPPNQPPSQP 208
Q P P QQQ Q PPQ Y Q PPPQ QV + + P QP S P
Sbjct: 133 AQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYP 192
Query: 209 PN--QPPNQQPNNTSASLPSP 227
PN P + + P
Sbjct: 193 PNEPLPSSMAMQPPYSGAPPS 213
Score = 30.7 bits (69), Expect = 0.98
Identities = 26/78 (33%), Positives = 26/78 (33%), Gaps = 3/78 (3%)
Query: 153 HQHHHMNHHPHPHPQQQQPQQPPPQHMMYA---QQPPPQHHQVVVNHQQTPPNQPPSQPP 209
H P Q PQQP PQ Y QP P Q Q PP Q P Q
Sbjct: 93 PPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQ 152
Query: 210 NQPPNQQPNNTSASLPSP 227
Q P QQP P
Sbjct: 153 YQSPPQQPQYQQNPPPQA 170
>gnl|CDD|217089 pfam02535, Zip, ZIP Zinc transporter. The ZIP family consists of
zinc transport proteins and many putative metal
transporters. The main contribution to this family is
from the Arabidopsis thaliana ZIP protein family these
proteins are responsible for zinc uptake in the plant.
Also found within this family are C. elegans proteins of
unknown function which are annotated as being similar to
human growth arrest inducible gene product, although
this protein in not found within this family.
Length = 314
Score = 35.4 bits (82), Expect = 0.032
Identities = 9/50 (18%), Positives = 16/50 (32%)
Query: 129 GNGIIPGPESPNDLVDPTLNNHHHHQHHHMNHHPHPHPQQQQPQQPPPQH 178
G+ P++ +N HH+H HH H ++
Sbjct: 113 GHDGEHSHTVPDEESGAVESNVVHHEHGEGPHHHHHEGHEKGESDKESGL 162
Score = 31.9 bits (73), Expect = 0.35
Identities = 12/105 (11%), Positives = 24/105 (22%), Gaps = 24/105 (22%)
Query: 99 PDSPSMGHMGPQNGHQTP--------------VVY------ASCKLQAAVGNGIIPGPES 138
P++ P G P +V K +
Sbjct: 58 PEALEALESSPCLGDHGPWHPFAGLIVLLGFFLVLLVEKLLTYYKGRGHSHGHDHGHDGE 117
Query: 139 PNDLVDPT----LNNHHHHQHHHMNHHPHPHPQQQQPQQPPPQHM 179
+ V + ++ H H H H H ++ + +
Sbjct: 118 HSHTVPDEESGAVESNVVHHEHGEGPHHHHHEGHEKGESDKESGL 162
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 35.3 bits (82), Expect = 0.042
Identities = 15/94 (15%), Positives = 19/94 (20%), Gaps = 13/94 (13%)
Query: 128 VGNGIIPGPESPNDLVDPTLNNHHHHQHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPP 187
+G + P P P QP PP
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPP------------PAPTPPLPQPT-ATAPPPTPPPPPPT 558
Query: 188 QHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTS 221
Q P + P P + P P S
Sbjct: 559 ATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDS 592
Score = 33.0 bits (76), Expect = 0.18
Identities = 6/62 (9%), Positives = 11/62 (17%)
Query: 166 PQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSASLP 225
P + P P + + P+ PP +
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420
Query: 226 SP 227
Sbjct: 421 PT 422
Score = 33.0 bits (76), Expect = 0.19
Identities = 19/70 (27%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Query: 159 NHHPHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPN 218
P P P PQ PPP Q N P S PP P P+
Sbjct: 529 KSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIP-ADSSPPPPIPEEPTPS 587
Query: 219 NTSASLPSPL 228
T S P +
Sbjct: 588 PTKDSSPEEI 597
Score = 32.6 bits (75), Expect = 0.31
Identities = 14/58 (24%), Positives = 17/58 (29%)
Query: 162 PHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNN 219
P P P QP P + PPP + P P+ P N N
Sbjct: 383 PSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSLN 440
Score = 31.9 bits (73), Expect = 0.54
Identities = 13/64 (20%), Positives = 16/64 (25%), Gaps = 3/64 (4%)
Query: 164 PHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSAS 223
+ P Q P PP TPP PP+ +S
Sbjct: 519 NTAKTPPPPQKSPPPPA---PTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575
Query: 224 LPSP 227
P P
Sbjct: 576 PPPP 579
Score = 29.9 bits (68), Expect = 1.8
Identities = 10/49 (20%), Positives = 14/49 (28%)
Query: 182 AQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSASLPSPLYP 230
A P + N P PS P + P+ A P+
Sbjct: 369 ANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPV 417
Score = 29.2 bits (66), Expect = 3.3
Identities = 10/61 (16%), Positives = 14/61 (22%)
Query: 167 QQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSASLPS 226
P + P TP P P P +P S + P+
Sbjct: 371 ASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPA 430
Query: 227 P 227
Sbjct: 431 N 431
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1,
2, 3, 4 family. These eukaryotic proteins recognize the
poly-A of mRNA and consists of four tandem RNA
recognition domains at the N-terminus (rrm: pfam00076)
followed by a PABP-specific domain (pfam00658) at the
C-terminus. The protein is involved in the transport of
mRNA's from the nucleus to the cytoplasm. There are four
paralogs in Homo sapiens which are expressed in testis
(GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ),
broadly expressed (SP:P11940_PABP1) and of unknown
tissue range (SP:Q15097_PABP2).
Length = 562
Score = 35.2 bits (81), Expect = 0.045
Identities = 27/143 (18%), Positives = 42/143 (29%), Gaps = 23/143 (16%)
Query: 95 QYPRPDSPSMGH--MGPQNGHQTPVVYASCKLQAAVGNGIIPGPESPNDLVDPTLNNHHH 152
P +MG Q Q + L ++P P P + P
Sbjct: 386 PMGSPMGGAMGQPPYYGQGPQQ---QFNGQPLGWP-RMSMMPTPMGPGGPLRP------- 434
Query: 153 HQHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQP 212
N + + + AQ+PP Q N+Q P +Q QP +
Sbjct: 435 ------NGLAPMNAVRAPSRNAQNA----AQKPPMQPVMYPPNYQSLPLSQDLPQPQSTA 484
Query: 213 PNQQPNNTSASLPSPLYPWMRSQ 235
N A + + P M+ Q
Sbjct: 485 SQGGQNKKLAQVLASATPQMQKQ 507
Score = 30.2 bits (68), Expect = 1.8
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 15/78 (19%)
Query: 166 PQQQQPQQPPP------QHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQP--PNQP----- 212
P+ +Q P Q Y Q P Q + + + P P P +P
Sbjct: 380 PRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLRPNGLAP 439
Query: 213 --PNQQPNNTSASLPSPL 228
+ P+ + +
Sbjct: 440 MNAVRAPSRNAQNAAQKP 457
>gnl|CDD|218163 pfam04592, SelP_N, Selenoprotein P, N terminal region. SelP is the
only known eukaryotic selenoprotein that contains
multiple selenocysteine (Sec) residues, and accounts for
more than 50% of the selenium content of rat and human
plasma. It is thought to be glycosylated. SelP may have
antioxidant properties. It can attach to epithelial
cells, and may protect vascular endothelial cells
against peroxynitrite toxicity. The high selenium
content of SelP suggests that it may be involved in
selenium intercellular transport or storage. The
promoter structure of bovine SelP suggest that it may be
involved in countering heavy metal intoxication, and may
also have a developmental function. The N-terminal
region of SelP can exist independently of the C terminal
region. Zebrafish selenoprotein Pb lacks the C terminal
Sec-rich region, and a protein encoded by the rat SelP
gene and lacking this region has also been reported.
N-terminal region contains a conserved SecxxCys motif,
which is similar to the CysxxCys found in thioredoxins.
It is speculated that the N terminal region may adopt a
thioredoxin fold and catalyze redox reactions. The
N-terminal region also contains a His-rich region, which
is thought to mediate heparin binding. Binding to
heparan proteoglycans could account for the membrane
binding properties of SelP. The function of the
bacterial members of this family is uncharcterised.
Length = 238
Score = 34.5 bits (79), Expect = 0.048
Identities = 14/51 (27%), Positives = 17/51 (33%)
Query: 137 ESPNDLVDPTLNNHHHHQHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPP 187
+ N V+ H H H H H H H P +QQP P
Sbjct: 171 ATVNKPVEAEPRQDHPHHHSHHEHQGHAHHHPHGHHHPGSNSHSESQQPDP 221
Score = 32.2 bits (73), Expect = 0.28
Identities = 13/48 (27%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
Query: 150 HHHHQHHHMNH-----HPHPHPQQQQPQQPPPQHMMYAQQPPPQHHQV 192
HHH H H H H H HP + +PP H
Sbjct: 187 HHHSHHEHQGHAHHHPHGHHHPGSNSHSESQQPDPDKPTEPPSGLHHH 234
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 33.9 bits (78), Expect = 0.086
Identities = 11/69 (15%), Positives = 16/69 (23%), Gaps = 6/69 (8%)
Query: 162 PHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTS 221
P P + P + P P S + PP + T+
Sbjct: 180 ASASPSDPPSSSPGVPSFPSPPEDPSSPSDS------SLPPAPSSFQSDTPPPSPESPTN 233
Query: 222 ASLPSPLYP 230
S P
Sbjct: 234 PSPPPGPAA 242
Score = 33.1 bits (76), Expect = 0.14
Identities = 11/66 (16%), Positives = 13/66 (19%), Gaps = 3/66 (4%)
Query: 162 PHPHPQQQQPQQPPPQHMMYA---QQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPN 218
P P P PP V T PPS P
Sbjct: 216 PSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGIT 275
Query: 219 NTSASL 224
++
Sbjct: 276 LDDDAI 281
Score = 32.7 bits (75), Expect = 0.23
Identities = 17/100 (17%), Positives = 23/100 (23%), Gaps = 7/100 (7%)
Query: 134 PGPESPNDLVDPTLNNHHHHQHHHMNHHPHPH--PQQQQPQQPPPQHMMYAQQPPPQHHQ 191
P D + ++ + P PP + PPP
Sbjct: 171 SFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPES 230
Query: 192 VVVNHQQTPPNQPPSQPP----NQPPNQQPNNTSASLPSP 227
N P P PP +P SAS
Sbjct: 231 PT-NPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPA 269
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 33.7 bits (77), Expect = 0.11
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 164 PHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSAS 223
P P QPPP H M PP P + PP P + PP + P ++
Sbjct: 145 PPPAPVVMMQPPPPHAMPPASPPA-----AQPAPSAPASSPPPTPASPPPAKAPKSSHPP 199
Query: 224 LPSPL 228
L SP+
Sbjct: 200 LKSPM 204
Score = 32.9 bits (75), Expect = 0.19
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 172 QQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSASLPSP 227
QPPP + QPPP H P + P +QP P P T AS P P
Sbjct: 142 PQPPPPAPVVMMQPPPP-------HAMPPASPPAAQPAPSAPASSPPPTPAS-PPP 189
>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional.
Length = 279
Score = 33.6 bits (77), Expect = 0.11
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 150 HHHHQHHHMNHHPHPHPQQQ 169
HHH H H +HH H ++
Sbjct: 134 EHHHDHGHHHHHEHGATAEE 153
Score = 32.5 bits (74), Expect = 0.23
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 148 NNHHHHQHHHMNHHPHPH 165
+HH H H H + H H H
Sbjct: 120 MHHHDHDHDHDHDHEHHH 137
Score = 32.5 bits (74), Expect = 0.24
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 150 HHHHQHHHMNHHPHPHPQQQQPQQPPPQ 177
H H H H +HH H H + Q +
Sbjct: 132 DHEHHHDHGHHHHHEHGATAEEYQDAHE 159
Score = 32.1 bits (73), Expect = 0.33
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 145 PTLNNHHHHQHHHMNHHPHPHP 166
L N HHH H H + H H H
Sbjct: 115 NWLENMHHHDHDHDHDHDHEHH 136
Score = 32.1 bits (73), Expect = 0.36
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 150 HHHHQHHHMNHHPHPH 165
H H H H +HH H H
Sbjct: 126 DHDHDHDHEHHHDHGH 141
Score = 31.7 bits (72), Expect = 0.42
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 150 HHHHQHHHMNHHPHPHPQQQQPQQPPPQH 178
H H H H + H H H +
Sbjct: 124 DHDHDHDHDHEHHHDHGHHHHHEHGATAE 152
Score = 31.7 bits (72), Expect = 0.48
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 148 NNHHHHQHHHMNHHPHPHP 166
++ H H+HHH + H H H
Sbjct: 128 DHDHDHEHHHDHGHHHHHE 146
Score = 30.5 bits (69), Expect = 0.86
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 149 NHHHHQHHHMNHHPHPHPQQQQPQQ 173
+H H HH +H H H + +
Sbjct: 128 DHDHDHEHHHDHGHHHHHEHGATAE 152
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 33.8 bits (78), Expect = 0.11
Identities = 13/66 (19%), Positives = 15/66 (22%)
Query: 162 PHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTS 221
P P P PP P Q P + P P P
Sbjct: 429 PQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAP 488
Query: 222 ASLPSP 227
A +P
Sbjct: 489 APAAAP 494
Score = 33.0 bits (76), Expect = 0.22
Identities = 13/69 (18%), Positives = 18/69 (26%), Gaps = 1/69 (1%)
Query: 160 HHPHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNH-QQTPPNQPPSQPPNQPPNQQPN 218
P P P P A PPP +P + P PP
Sbjct: 431 PAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAP 490
Query: 219 NTSASLPSP 227
+ + P+
Sbjct: 491 AAAPAAPAA 499
Score = 29.2 bits (66), Expect = 3.9
Identities = 10/67 (14%), Positives = 13/67 (19%), Gaps = 4/67 (5%)
Query: 161 HPHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNT 220
P P P P PP P + P
Sbjct: 420 AAAPAPAAAPQPAPAPA----PAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPE 475
Query: 221 SASLPSP 227
+ P+P
Sbjct: 476 PTAAPAP 482
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 32.9 bits (75), Expect = 0.21
Identities = 15/69 (21%), Positives = 21/69 (30%)
Query: 162 PHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTS 221
P P + P A PP+ P +P + P P P T
Sbjct: 374 AAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTR 433
Query: 222 ASLPSPLYP 230
A++P P
Sbjct: 434 AAIPVDEKP 442
>gnl|CDD|226193 COG3667, PcoB, Uncharacterized protein involved in copper
resistance [Inorganic ion transport and metabolism].
Length = 321
Score = 32.5 bits (74), Expect = 0.22
Identities = 19/75 (25%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 126 AAVGNGIIPGPESPNDLVDPTLNNH----HHHQHH----HMNHHPHPHPQQQQPQQPPPQ 177
AA G + P + P + H H H H P P+ PQ
Sbjct: 13 AAAALGPLVAQPHPTEAAQPHAHEHAPMDAPHPAMPGMDHHAHSKMPGPEMAAPQMDHGA 72
Query: 178 --HMMYAQQPPPQHH 190
HM +A P P H
Sbjct: 73 MPHMDHAPPPIPTQH 87
Score = 32.2 bits (73), Expect = 0.32
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 152 HHQHHHMNHHPHPHPQQQQPQQ---PPPQHMMYAQQPPPQHHQV 192
H HM+H P P P Q ++ P A PP Q +
Sbjct: 70 HGAMPHMDHAPPPIPTQHAAERSRSPASAAARVAAFPPAQGMKE 113
>gnl|CDD|220535 pfam10037, MRP-S27, Mitochondrial 28S ribosomal protein S27.
Members of this family of small ribosomal proteins
possess one of three conserved blocks of sequence found
in proteins that stimulate the dissociation of guanine
nucleotides from G-proteins, leaving open the
possibility that MRP-S27 might be a functional partner
of GTP-binding ribosomal proteins.
Length = 417
Score = 32.8 bits (75), Expect = 0.24
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 239 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHA--LCLTERQIKIWFQNRRMKWKKE 296
+ ++ ++ Q L + L+ R+ L L E++ ++WF R W+++
Sbjct: 341 ESFQEWRSKLQALA---KVESRSLLSVEERLPTIEKEDLELYEQRQQLWFFENRKLWQRK 397
Query: 297 NKSK 300
K +
Sbjct: 398 KKLR 401
>gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN;
Provisional.
Length = 319
Score = 32.3 bits (73), Expect = 0.25
Identities = 14/61 (22%), Positives = 19/61 (31%)
Query: 167 QQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSASLPS 226
+QQ+ Q QQ V Q +Q P Q Q P +T+A
Sbjct: 164 EQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLLQTPAHTTAQSKP 223
Query: 227 P 227
Sbjct: 224 Q 224
Score = 29.3 bits (65), Expect = 2.6
Identities = 12/51 (23%), Positives = 16/51 (31%)
Query: 167 QQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQP 217
Q+Q Q Q + + Q Q Q P Q + QQP
Sbjct: 156 QRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQP 206
>gnl|CDD|222579 pfam14179, YppG, YppG-like protein. The YppG-like protein family
includes the B. subtilis YppG protein, which is
functionally uncharacterized. This family of proteins is
found in bacteria. Proteins in this family are typically
between 115 and 181 amino acids in length. There are two
completely conserved residues (F and G) that may be
functionally important.
Length = 110
Score = 30.8 bits (70), Expect = 0.27
Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 154 QHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPP 213
+ N + +P Q Q QQP Q + Q PPP + P QP P P
Sbjct: 1 NPYQQNTNQYPP--QNQQQQPYQQQPYHQQMPPPPYSPPQQQQGHFMPPQPQPYPKQSPQ 58
Query: 214 NQQPNNTS 221
QQP S
Sbjct: 59 QQQPPQFS 66
Score = 28.9 bits (65), Expect = 1.5
Identities = 15/62 (24%), Positives = 17/62 (27%)
Query: 145 PTLNNHHHHQHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQP 204
T +Q H Q P PPQ PP + QQ P Q
Sbjct: 6 NTNQYPPQNQQQQPYQQQPYHQQMPPPPYSPPQQQQGHFMPPQPQPYPKQSPQQQQPPQF 65
Query: 205 PS 206
S
Sbjct: 66 SS 67
>gnl|CDD|172358 PRK13831, PRK13831, conjugal transfer protein TrbI; Provisional.
Length = 432
Score = 32.4 bits (74), Expect = 0.29
Identities = 24/86 (27%), Positives = 30/86 (34%), Gaps = 19/86 (22%)
Query: 166 PQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQP-PNQPPNQQPN-NTSAS 223
PQQQQ QP P V QQ P P P Q ++P +
Sbjct: 85 PQQQQTFQPTP-----------------VETQQEEKAVNPFTPQPGQREERRPTLESEEE 127
Query: 224 LPSPLYPWMRSQFERKRGRQTYTRYQ 249
+ L Q+ R+R RQ R Q
Sbjct: 128 WRARLKREQEEQYLRERQRQRMARLQ 153
>gnl|CDD|165431 PHA03160, PHA03160, hypothetical protein; Provisional.
Length = 499
Score = 32.4 bits (73), Expect = 0.30
Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 5/90 (5%)
Query: 139 PNDLVDPTLNNHHHHQHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQ 198
PN ++ +N + H + + + +QQ P Q V QQ
Sbjct: 376 PNRIIPHHFSNPYSFDPGHAPFFRYAPYGAPKNDHHLLPPLACSQQLPMQPLHV----QQ 431
Query: 199 TPPNQPP-SQPPNQPPNQQPNNTSASLPSP 227
P P + PP QPP+ Q S
Sbjct: 432 APMQAPHVAPPPMQPPHVQQPRVLPSTDGA 461
>gnl|CDD|221519 pfam12302, DUF3629, Protein of unknown function (DUF3629). This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 256 and 292 amino
acids in length.
Length = 253
Score = 31.9 bits (72), Expect = 0.34
Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 177 QHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSASLPSPLYPWMRSQF 236
Q Y Q PP + V Q P P P + + QPN T + S W +S
Sbjct: 174 QQHRYMQTPPKINPIKVEAEVQLPSKSVPDNPASGTTSGQPNQTKTDMTSRA-KWAKSIL 232
Query: 237 ERKRGR 242
E + R
Sbjct: 233 ELHKTR 238
>gnl|CDD|217461 pfam03261, CDK5_activator, Cyclin-dependent kinase 5 activator
protein.
Length = 314
Score = 31.8 bits (72), Expect = 0.36
Identities = 10/48 (20%), Positives = 17/48 (35%)
Query: 180 MYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSASLPSP 227
+ P P + + + P QPP PP+ + +PS
Sbjct: 95 LKKSVPRPSDTTLSCANLSSLREPSPGQPPAPPPSVLSGKNANCIPSQ 142
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 32.2 bits (73), Expect = 0.38
Identities = 17/99 (17%), Positives = 27/99 (27%), Gaps = 9/99 (9%)
Query: 173 QPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSASLPSPLYPWM 232
P Q P TP Q P Q P S+ +P +
Sbjct: 268 AQTPMPERSWQTPAQTP----ARRISTP--MTEEIKSWQTPLQTPAMYSSDYQAPKPEPI 321
Query: 233 RSQFERKRGR---QTYTRYQTLELEKEFHFNRYLTRRRR 268
+ E R R + + + E + +R+R
Sbjct: 322 YTWEELLRERFPSDLFAISSLPDSDSEASDSGPTRKRKR 360
Score = 30.6 bits (69), Expect = 1.1
Identities = 11/82 (13%), Positives = 18/82 (21%), Gaps = 1/82 (1%)
Query: 159 NHHPHPHPQQQQP-QQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQP 217
+ P P ++ Q P P + + QTP +P
Sbjct: 264 KNTPAQTPMPERSWQTPAQTPARRISTPMTEEIKSWQTPLQTPAMYSSDYQAPKPEPIYT 323
Query: 218 NNTSASLPSPLYPWMRSQFERK 239
P + S
Sbjct: 324 WEELLRERFPSDLFAISSLPDS 345
>gnl|CDD|222376 pfam13781, DoxX_3, DoxX-like family. This family of
uncharacterized proteins are related to DoxX pfam07681.
Length = 102
Score = 30.2 bits (69), Expect = 0.38
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 96 YPRPDSPSM-GHMGPQNGHQTPVVYASCKLQAAVGNGII 133
+P P ++ G ++Y L A+G ++
Sbjct: 15 FPVPGELALLAAAGLPAALAPLLLYGGGLLDIALGLLLL 53
>gnl|CDD|113452 pfam04684, BAF1_ABF1, BAF1 / ABF1 chromatin reorganising factor.
ABF1 is a sequence-specific DNA binding protein involved
in transcription activation, gene silencing and
initiation of DNA replication. ABF1 is known to remodel
chromatin, and it is proposed that it mediates its
effects on transcription and gene expression by
modifying local chromatin architecture. These functions
require a conserved stretch of 20 amino acids in the
C-terminal region of ABF1 (amino acids 639 to 662 S.
cerevisiae). The N-terminal two thirds of the protein
are necessary for DNA binding, and the N-terminus (amino
acids 9 to 91 in S. cerevisiae) is thought to contain a
novel zinc-finger motif which may stabilise the protein
structure.
Length = 508
Score = 32.0 bits (72), Expect = 0.42
Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 4/140 (2%)
Query: 145 PTLNNHHHHQHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQP 204
P++ HH HQ + H H H Q Q Q QH QQ H V + + +
Sbjct: 300 PSIPAHHQHQLPEGHQHDHQHHHQHQQQD--LQHQEQHQQHVDNDHHVYQDRIGSISDND 357
Query: 205 PSQPPNQPPNQQPNNTSASLPSPLYPWMRSQFERKRGRQTYTRYQTLE-LEKEFHFN-RY 262
+ N N +A+ + R + + + + Q + ++ + H + R
Sbjct: 358 DAAIHNLDDNNVRVAAAAAAAAAAALQSRDNHDSEDLKLNCEQGQDDDGIDDDNHDSKRQ 417
Query: 263 LTRRRRIEIAHALCLTERQI 282
L RR R +A AL + R I
Sbjct: 418 LHRRDRDRVAEALKMATRDI 437
Score = 32.0 bits (72), Expect = 0.45
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 149 NHHHHQHHHM----NHHPHPHPQQQQPQ-QPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQ 203
+HH HQHHH HH H P+ Q Q QH Q QH Q V N ++
Sbjct: 290 DHHQHQHHHHPSIPAHHQHQLPEGHQHDHQHHHQHQQQDLQHQEQHQQHVDNDHHVYQDR 349
Query: 204 PPSQPPN 210
S N
Sbjct: 350 IGSISDN 356
>gnl|CDD|177648 PHA03420, PHA03420, E4 protein; Provisional.
Length = 137
Score = 30.7 bits (69), Expect = 0.47
Identities = 13/63 (20%), Positives = 16/63 (25%), Gaps = 2/63 (3%)
Query: 146 TLNNHHHHQHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPP 205
T + + H HHPH H Q Q Q P T
Sbjct: 42 TWDPADYLDRPH--HHPHRHQQDDHHLQDRQHLPQQHLQRPHHPLSPQCQQNVTGKPVLQ 99
Query: 206 SQP 208
+P
Sbjct: 100 QEP 102
Score = 26.9 bits (59), Expect = 7.9
Identities = 11/46 (23%), Positives = 14/46 (30%)
Query: 149 NHHHHQHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVV 194
+ QH H PH Q QQ P +VV+
Sbjct: 65 HLQDRQHLPQQHLQRPHHPLSPQCQQNVTGKPVLQQEPKVGQEVVI 110
>gnl|CDD|236362 PRK09010, PRK09010, single-stranded DNA-binding protein;
Provisional.
Length = 177
Score = 31.0 bits (70), Expect = 0.58
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 167 QQQQPQQPPPQHMMYAQ-QPPPQHHQVVVNHQQTPPNQPPSQPPNQPP 213
Q + Q Q P +Q Q P P+ P N+PP
Sbjct: 121 APAGGNIGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNEPP 168
>gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit
SFB2/subunit SFB3 [Intracellular trafficking and
secretion].
Length = 861
Score = 31.7 bits (72), Expect = 0.60
Identities = 17/112 (15%), Positives = 27/112 (24%), Gaps = 4/112 (3%)
Query: 118 VYASCKLQAAVGNGIIPGPESPNDLVDPTLNNHHHHQHHHMNHHPHPHPQQQQPQQPPPQ 177
VY + Q G P+ + ++Q Q
Sbjct: 8 VYPQAQSQVHTGAASSKKSARPHRAYANFSAGQMGMPPYTTPPLQQ-QSRRQIDQAATAM 66
Query: 178 HMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSASLPSPLY 229
H A P P QQ + + P T+ +P L+
Sbjct: 67 HNTGANNPAPSVMSPAFQSQQKFSSPYGGSMAD---GTAPKPTNPLVPVDLF 115
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase.
Length = 379
Score = 31.4 bits (71), Expect = 0.66
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 9/36 (25%)
Query: 150 HHHHQHHHMNHHPHPHPQQQQ---------PQQPPP 176
H HH +HH H HP + P PPP
Sbjct: 34 PHSIHHHSHHHHHHKHPDDGKKVSICDDFPPDFPPP 69
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that
may also include truncated forms and/or pseudogenes.
Members are predicted lipoproteins with a conserved
signal peptidase II processing and lipid attachment
site. Note that the name for certain characterized
members, p72, reflects an anomalous apparent molecular
weight, given a theoretical MW of about 61 kDa.
Length = 541
Score = 31.3 bits (71), Expect = 0.70
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 166 PQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQP----PNQPPNQQPNN 219
++ P P+ ++P P ++ + + P +P +P PN QPNN
Sbjct: 71 KDEENPSSTNPE-----KKPDPSKNKEEIEKPKDEPKKPDKKPQADQPNNVHADQPNN 123
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 31.3 bits (71), Expect = 0.76
Identities = 13/69 (18%), Positives = 16/69 (23%)
Query: 162 PHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTS 221
P Q AQ PQ T PP+ P PP+ P
Sbjct: 389 APQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVR 448
Query: 222 ASLPSPLYP 230
+
Sbjct: 449 PAQFKEEKK 457
Score = 29.4 bits (66), Expect = 3.3
Identities = 12/64 (18%), Positives = 15/64 (23%), Gaps = 6/64 (9%)
Query: 164 PHPQQQQ----PQQPPPQHMMYAQQPPPQHHQVVVNHQQTPP--NQPPSQPPNQPPNQQP 217
P Q Q PQ PP P P + P Q ++
Sbjct: 398 ASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKK 457
Query: 218 NNTS 221
S
Sbjct: 458 IPVS 461
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 30.5 bits (69), Expect = 0.93
Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
Query: 162 PHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVN--HQQTPPNQPPSQPPNQPPNQQPNN 219
P P P+ + Q PP +P P + + P P P P +P
Sbjct: 56 PQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQP 115
Query: 220 TSASLPSP 227
PS
Sbjct: 116 KPKKPPSK 123
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 30.6 bits (69), Expect = 1.4
Identities = 26/127 (20%), Positives = 39/127 (30%), Gaps = 11/127 (8%)
Query: 134 PGPESPNDLVDPTLNNHHHHQHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPP---QHH 190
PE P P + + + P P+Q Q P + Y Q+P P
Sbjct: 106 SEPELPRPGRRP----YEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEPGAWPRA 161
Query: 191 QVVVNHQQT----PPNQPPSQPPNQPPNQQPNNTSASLPSPLYPWMRSQFERKRGRQTYT 246
QQ PP P + P + P Q+ + P Y R ++ R
Sbjct: 162 ADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRP 221
Query: 247 RYQTLEL 253
R +
Sbjct: 222 RRDRTDR 228
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a
role in the biomineralisation of teeth. They seem to
regulate formation of crystallites during the secretory
stage of tooth enamel development and are thought to
play a major role in the structural organisation and
mineralisation of developing enamel. The extracellular
matrix of the developing enamel comprises two major
classes of protein: the hydrophobic amelogenins and the
acidic enamelins. Circular dichroism studies of porcine
amelogenin have shown that the protein consists of 3
discrete folding units: the N-terminal region appears to
contain beta-strand structures, while the C-terminal
region displays characteristics of a random coil
conformation. Subsequent studies on the bovine protein
have indicated the amelogenin structure to contain a
repetitive beta-turn segment and a "beta-spiral" between
Gln112 and Leu138, which sequester a (Pro, Leu, Gln)
rich region. The beta-spiral offers a probable site for
interactions with Ca2+ ions. Muatations in the human
amelogenin gene (AMGX) cause X-linked hypoplastic
amelogenesis imperfecta, a disease characterised by
defective enamel. A 9bp deletion in exon 2 of AMGX
results in the loss of codons for Ile5, Leu6, Phe7 and
Ala8, and replacement by a new threonine codon,
disrupting the 16-residue (Met1-Ala16) amelogenin signal
peptide.
Length = 165
Score = 29.4 bits (66), Expect = 1.4
Identities = 17/56 (30%), Positives = 18/56 (32%)
Query: 154 QHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPP 209
QHH N Q PPQ Q PP H + Q P P QP
Sbjct: 86 QHHQPNLPQPAQQPFQPQPLQPPQPQQPMQPQPPVHPIPPLPPQPPLPPMFPMQPL 141
>gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome
partitioning].
Length = 324
Score = 30.2 bits (68), Expect = 1.4
Identities = 14/78 (17%), Positives = 18/78 (23%), Gaps = 5/78 (6%)
Query: 155 HHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPPQ----HHQVVVNHQQTP-PNQPPSQPP 209
H P Q Q + Q P H Q P + QP
Sbjct: 77 QEHEAARQSPQHQYQPEYASAQIKIPVPQPPQISDPPAHPQPTQPALDQEQPPEEARQPV 136
Query: 210 NQPPNQQPNNTSASLPSP 227
P ++ P P
Sbjct: 137 LPQEAPAPQPVHSAAPQP 154
Score = 30.2 bits (68), Expect = 1.5
Identities = 16/81 (19%), Positives = 22/81 (27%), Gaps = 2/81 (2%)
Query: 150 HHHHQHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQP- 208
++ Q Q Q P + P PQ Q+ P QP
Sbjct: 67 VRKNEAPQFTQEHEAARQSPQHQYQPEYASAQIKIPVPQPPQISDPPAHPQPTQPALDQE 126
Query: 209 -PNQPPNQQPNNTSASLPSPL 228
P + Q A P P+
Sbjct: 127 QPPEEARQPVLPQEAPAPQPV 147
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
Length = 475
Score = 30.3 bits (68), Expect = 1.5
Identities = 19/94 (20%), Positives = 28/94 (29%), Gaps = 14/94 (14%)
Query: 168 QQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNT---SASL 224
+ + P P A PPP P + + P ++P
Sbjct: 13 EAEQPAPAPPSPAAAPAPPPP------AKTAAPATKAAAPAAAAPRAEKPKKDKPRRERK 66
Query: 225 PSPLYPWMRSQF--ERKRGRQTYTRYQTLELEKE 256
P P W F E + G+ TR+ L E
Sbjct: 67 PKPASLWKLEDFVVEPQEGK---TRFHDFNLAPE 97
>gnl|CDD|237722 PRK14476, PRK14476, nitrogenase molybdenum-cofactor biosynthesis
protein NifN; Provisional.
Length = 455
Score = 30.2 bits (69), Expect = 1.5
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 154 QHHHMNHHPHPHPQQQQPQQPPPQH 178
HHH +H P P P + H
Sbjct: 429 AHHHAHHEPLPQDFAAAPARGDADH 453
Score = 28.3 bits (64), Expect = 5.8
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 147 LNNHHHHQHHHMNHHPHPHPQQQQPQQPP 175
L HHH H + P + P
Sbjct: 427 LLAHHHAHHEPLPQDFAAAPARGDADHAP 455
>gnl|CDD|235132 PRK03577, PRK03577, acid shock protein precursor; Provisional.
Length = 102
Score = 28.5 bits (63), Expect = 1.5
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Query: 134 PGPESPNDLVDPTLNNHHHHQHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVV 193
P + P HHH + H P+Q+ Q+ P Q Q
Sbjct: 28 AAPAATTTTAAPAKTTHHHKKQHK------KAPEQKAQAAKKHHKNKKEQKAPEQKAQAA 81
Query: 194 VNHQQTPPNQPPSQPPNQP 212
H + ++ ++P QP
Sbjct: 82 KKHAKKHSHKTAAKPAAQP 100
>gnl|CDD|234383 TIGR03895, protease_PatA, cyanobactin maturation protease,
PatA/PatG family. This model describes a protease
domain associated with the maturation of various members
of the cyanobactin family of ribosomally produced,
heavily modified bioactive metabolites. Members include
the PatA protein and C-terminal domain of the PatG
protein of Prochloron didemni, TenA and a region of TenG
from Nostoc spongiaeforme var. tenue, etc.
Length = 602
Score = 30.1 bits (68), Expect = 2.0
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 9/64 (14%)
Query: 164 PHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQP---------PNQPPN 214
P + +P + P Q+ ++ P P+ P P+Q P+
Sbjct: 263 PPGRAAEPAPVSIPVAAPGEGATPAAAQIELSAGVLPNAISPATPVRPASNGVTPSQAPS 322
Query: 215 QQPN 218
+P
Sbjct: 323 AEPQ 326
>gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed.
Length = 356
Score = 29.7 bits (66), Expect = 2.1
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 167 QQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSASLP- 225
+ QP+Q + + + P P+ Q + T P + PP+ Q +T + P
Sbjct: 94 KISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPKTKVTTPPSTNTPQPMQSTKSDTPQ 153
Query: 226 SPLYPWMRSQFERK-RGRQTYTRYQTLELEKEFHF 259
SP ++ K + Y + E EK+F F
Sbjct: 154 SPTIKQAQTDMTPKYEDLRAYYTKPSFEFEKQFGF 188
>gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain. This is a homeobox
transcription factor KN domain conserved from fungi to
human and plants.
Length = 40
Score = 26.7 bits (60), Expect = 2.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 260 NRYLTRRRRIEIAHALCLTERQIKIWFQNRRM 291
N Y + + E+A L+ +QI WF N R
Sbjct: 8 NPYPSEEEKSELARQTGLSRKQIDNWFINARR 39
>gnl|CDD|236558 PRK09545, znuA, high-affinity zinc transporter periplasmic
component; Reviewed.
Length = 311
Score = 29.6 bits (67), Expect = 2.1
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 144 DPTLNNHHHHQHHHMNHHPHPH 165
D ++ H H H + H H
Sbjct: 119 DDHHDDDHDHAGHEKSDEDHHH 140
>gnl|CDD|220419 pfam09814, DUF2351, Uncharacterized conserved protein (DUF2351).
Members of this family of proteins have no known
function.
Length = 350
Score = 29.4 bits (66), Expect = 2.2
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 139 PNDLVDPTLNNHHHHQHHHMNHHPHPHP--QQQQPQQ 173
P++ ++ H H+ H P +P +
Sbjct: 129 PSENWAELMDFWHCHKPPFAEAHKDDTPAKNSLKPTE 165
>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional.
Length = 1250
Score = 29.6 bits (66), Expect = 2.3
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 195 NHQQTPPNQPPSQP-PNQPPNQQPNNTSASLPSPLY 229
+ + TPP+ P P P+ P P+ T P+P Y
Sbjct: 915 SQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAY 950
>gnl|CDD|217974 pfam04227, Indigoidine_A, Indigoidine synthase A like protein.
Indigoidine is a blue pigment synthesised by Erwinia
chrysanthemi implicated in pathogenicity and protection
from oxidative stress. IdgA is involved in indigoidine
biosynthesis, but its specific function is unknown. The
recommended name for this protein is now
pseudouridine-5'-phosphate glycosidase.
Length = 293
Score = 29.4 bits (67), Expect = 2.4
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 9/22 (40%)
Query: 59 NNGQPV---------HGMPYPR 71
G+PV HGMPYP+
Sbjct: 8 AAGKPVVALESTIITHGMPYPQ 29
>gnl|CDD|221404 pfam12067, Sox_C_TAD, Sox C-terminal transactivation domain. This
domain is found at the C-terminus of the Sox family of
transcription factors. It is found associated with
pfam00505. It binds to the Armadillo repeats (pfam00514)
in Catenin beta-1 (CTNNB1), which is involved in
transcriptional regulation. It functions as a
transactivating domain (TAD).
Length = 197
Score = 28.9 bits (65), Expect = 2.4
Identities = 11/67 (16%), Positives = 17/67 (25%), Gaps = 8/67 (11%)
Query: 151 HHHQHHHMNHHPHPHPQQQQPQQ------PPPQHMMYAQQPPPQHHQVVVNH--QQTPPN 202
+ H + Q P P M Y Q P+ + Q +PP
Sbjct: 63 NAHAPALLRQMAVTENIPQGSPAPSIMGCPTPPQMYYGQMYVPECAKHHPVQLGQLSPPP 122
Query: 203 QPPSQPP 209
+
Sbjct: 123 ESQHLDT 129
>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional.
Length = 663
Score = 29.6 bits (66), Expect = 2.6
Identities = 27/113 (23%), Positives = 37/113 (32%), Gaps = 18/113 (15%)
Query: 162 PHPHPQQQQPQQ--------PPPQHMMYAQQPPPQ---HHQVVVNHQQTPPNQPPSQPPN 210
H P +Q Q P + M A P PQ +V + P P
Sbjct: 374 THTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNPQSPGTSYGPEPV 433
Query: 211 QPPNQQPNNTS------ASLPSPLYPWMRSQFERKRGRQTYTRYQTLELEKEF 257
P QP N A++ P +P ERKR R + + +E K
Sbjct: 434 GPVPPQPTNPYVMPISMANMVYPGHP-QEHGHERKRKRGGELKEELIETLKLV 485
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 29.7 bits (66), Expect = 2.8
Identities = 22/69 (31%), Positives = 26/69 (37%)
Query: 162 PHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTS 221
P P Q PPQ A QP PQ Q + P+ P + P+ P QP S
Sbjct: 191 PSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTAS 250
Query: 222 ASLPSPLYP 230
P P P
Sbjct: 251 QQSPQPPAP 259
Score = 29.3 bits (65), Expect = 3.2
Identities = 25/101 (24%), Positives = 32/101 (31%), Gaps = 7/101 (6%)
Query: 132 IIPGPESPNDLVDPTLNNHHHHQHHHMNHHPHPHPQQQQPQQPPPQHMMYAQ-------Q 184
+ P S P ++ H HH P PH QQ P Q Q
Sbjct: 244 LQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQ 303
Query: 185 PPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSASLP 225
PP P + P QPP +QP + S+P
Sbjct: 304 VPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMP 344
>gnl|CDD|220281 pfam09531, Ndc1_Nup, Nucleoporin protein Ndc1-Nup. Ndc1 is a
nucleoporin protein that is a component of the Nuclear
Pore Complex, and, in fungi, also of the Spindle Pole
Body. It consists of six transmembrane segments, three
lumenal loops, both concentrated at the N-terminus and
cytoplasmic domains largely at the C-terminus, all of
which are well conserved.
Length = 557
Score = 29.6 bits (67), Expect = 2.8
Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 190 HQVVVNHQQT----PPNQPPSQPPNQPPNQQPNNTSASLPSPLYPWMRSQFERKRGRQTY 245
+VN+ T P Q PS +P + + T+ S P + S + R+R +
Sbjct: 348 TSRLVNYLSTSDLKPRPQSPSSGKIEPTSDSDSLTAPSSALSP-PTLPSAYGRERDVFSR 406
Query: 246 TRYQTLELEKEFHFNRYLTR--RRRIEI---------AHALCLTERQIKIW 285
+ ++ + +Y+ + + + I A + L Q+ I
Sbjct: 407 AKSIFTPIQSKLTLAQYIKKFLKSPVGIPFRFSKKRQAESRVLANPQLHIN 457
>gnl|CDD|234474 TIGR04113, cas_csx17, CRISPR-associated protein Csx17, subtype
Dpsyc. Members of this protein family are found
exclusively in CRISPR-associated (cas) type I system
gene clusters of the Dpsyc subtype. Markers for that
type include a variant form of cas3 (model TIGR02621)
and the GSU0054-like protein family (model TIGR02165).
This family occurs in less than half of known Dpsyc
clusters.
Length = 704
Score = 29.3 bits (66), Expect = 2.8
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 219 NTSASLPSPLYPWMRSQFERKRGRQTYTRYQTLE---LEKEFHFNRYLTRRRRIEIAHAL 275
A L + L W+ R + + + E F + R E+ AL
Sbjct: 373 QPRADLINELDGWLNRFRSFPRDGKAPASFLSARRRIEEAIFAAATHPHPSRFQELLIAL 432
Query: 276 CLTERQI 282
ER++
Sbjct: 433 GEAERRL 439
>gnl|CDD|221625 pfam12533, Neuro_bHLH, Neuronal helix-loop-helix transcription
factor. This domain family is found in eukaryotes, and
is approximately 80 amino acids in length. The family is
found C-terminal to pfam00010. There is a single
completely conserved residue W that may be functionally
important. Neuronal basic helix-loop-helix (bHLH)
transcription factors such as neuroD and neurogenin have
been shown to play important roles in neuronal
development.
Length = 120
Score = 28.1 bits (63), Expect = 2.8
Identities = 16/85 (18%), Positives = 22/85 (25%), Gaps = 9/85 (10%)
Query: 147 LNNHHHHQHHHMNHHPHPHPQQQQ-PQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPP 205
L H + HP Q P P P H H + H +P
Sbjct: 37 LPEQQQDYSHSGSSPFSQHPYPYQSPGLPSPPH----GSMSSSHSLHLKPHGYCSAYEPF 92
Query: 206 SQPP----NQPPNQQPNNTSASLPS 226
+ PP P + S+
Sbjct: 93 YESHSPDCGSPPYDGPLSPPLSING 117
>gnl|CDD|221742 pfam12734, CYSTM, Cysteine-rich TM module stress tolerance. The
members of this family are short cysteine-rich membrane
proteins that most probably dimerise together to form a
transmembrane sulfhydryl-lined pore. The CYSTM module is
always present at the extreme C-terminus of the protein
in which it is present. Furthermore, like the yeast
prototypes, the majority of the proteins also possess a
proline/glutamine-rich segment upstream of the CYSTM
module that is likely to form a polar, disordered head
in the cytoplasm. The presence of an atypical
well-conserved acidic residue at the C-terminal end of
the TM helix suggests that this might interact with a
positively charged moiety in the lipid head group.
Consistently across the eukaryotes, the different
versions of the CYSTM module appear to have roles in
stress-response or stress-tolerance, and, more
specifically, in resistance to deleterious substances,
implying that thes might be general functions of the
whole family.
Length = 37
Score = 26.1 bits (58), Expect = 3.0
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 176 PQHMMYAQQPPPQHHQ 191
P +Y QQPPPQ
Sbjct: 1 PPQPVYVQQPPPQSGG 16
>gnl|CDD|219404 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein
(LMP2) protein. This family consists of several
Gammaherpesvirus latent membrane protein (LMP2)
proteins. Epstein-Barr virus is a human Gammaherpesvirus
that infects and establishes latency in B lymphocytes in
vivo. The latent membrane protein 2 (LMP2) gene is
expressed in latently infected B cells and encodes two
protein isoforms, LMP2A and LMP2B, that are identical
except for an additional N-terminal 119 aa cytoplasmic
domain which is present in the LMP2A isoform. LMP2A is
thought to play a key role in either the establishment
or the maintenance of latency and/or the reactivation of
productive infection from the latent state. The
significance of LMP2B and its role in pathogenesis
remain unclear.
Length = 489
Score = 29.1 bits (65), Expect = 3.1
Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 97 PRPDSPSMGHMGPQN--GHQTPVVYASCKLQAAVGNGIIPGPESPND 141
P + G G Q P +YA L G G+ P P SP D
Sbjct: 58 PPYGGSNGDRHGGYQPLGQQDPSLYA--GLGQNGGGGLPPPPYSPRD 102
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 29.2 bits (66), Expect = 3.3
Identities = 11/62 (17%), Positives = 16/62 (25%), Gaps = 23/62 (37%)
Query: 166 PQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSASLP 225
P QP + P PP PP + + PP + A
Sbjct: 259 PAPPQPPEEEP-----------------------PPPPPPPEDDDDPPEDEEEQDDAEDR 295
Query: 226 SP 227
+
Sbjct: 296 AL 297
>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional.
Length = 222
Score = 28.8 bits (64), Expect = 3.3
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 197 QQTPPNQPPSQPPNQPPNQQPNN 219
Q+ P QP SQP Q QQPNN
Sbjct: 174 QEQPSQQPQSQPQPQQQPQQPNN 196
>gnl|CDD|227483 COG5154, BRX1, RNA-binding protein required for 60S ribosomal
subunit biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 283
Score = 28.8 bits (64), Expect = 3.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 265 RRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKSKD 301
RR + I LC KIW + + + E+KSKD
Sbjct: 167 RRSKPFIDKVLCFFILDGKIWVRCYEIGRENEDKSKD 203
>gnl|CDD|177476 PHA02694, PHA02694, hypothetical protein; Provisional.
Length = 292
Score = 28.6 bits (63), Expect = 4.0
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 82 NAAYYGAHEGGMEQYPRPDSPSMGHMGPQNGHQTPVVYASCKLQAAVGNGIIPGPESPND 141
+A GG QYP+ S + GH G ++ ++ + + + + S
Sbjct: 8 ASASANHAHGGNPQYPQYYSHNHGHEGDRHDESENHIHITDDEHLVLSDDCLGNGAS--- 64
Query: 142 LVDPTLNNHHHHQHHHMNHHPHPHPQQQQP---QQPPPQHMM 180
+ H H H +Q+ P + P P +++
Sbjct: 65 ----YCGHDHGHAGHGHEGGGDRE-RQRAPRLYEDPVPANII 101
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein.
Length = 753
Score = 29.0 bits (65), Expect = 4.0
Identities = 13/67 (19%), Positives = 19/67 (28%), Gaps = 2/67 (2%)
Query: 164 PHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSAS 223
+ P +P H A + P PP P P ++ AS
Sbjct: 675 SRVARGDPVRPTAHHA--ALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIAS 732
Query: 224 LPSPLYP 230
+P P
Sbjct: 733 PTAPPEP 739
>gnl|CDD|234273 TIGR03593, yidC_nterm, membrane protein insertase, YidC/Oxa1
family, N-terminal domain. Essentially all bacteria
have a member of the YidC family, whose C-terminal
domain is modeled by TIGR03592. The two copies are found
in endospore-forming bacteria such as Bacillus subtilis
appear redundant during vegetative growth, although the
member designated spoIIIJ (stage III sporulation protein
J) has a distinct role in spore formation. YidC, its
mitochondrial homolog Oxa1, and its chloroplast homolog
direct insertion into the bacterial/organellar inner (or
only) membrane. This model describes an N-terminal
sequence region, including a large periplasmic domain
lacking in YidC members from Gram-positive species. The
multifunctional YidC protein acts both with and
independently of the Sec system [Protein fate, Protein
and peptide secretion and trafficking].
Length = 366
Score = 28.8 bits (65), Expect = 4.1
Identities = 9/55 (16%), Positives = 13/55 (23%), Gaps = 6/55 (10%)
Query: 169 QQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSAS 223
Q PPP +PP + P P +A+
Sbjct: 22 QSDPGPPPP------KPPAAAQTASAQSATAAATPAAAPPAADAPAAAAAADAAA 70
>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 28.8 bits (64), Expect = 4.1
Identities = 31/139 (22%), Positives = 43/139 (30%), Gaps = 31/139 (22%)
Query: 164 PHPQQQQPQQPP--------PQHMMYAQQPPPQHHQVVVNHQQTPPN--QPPSQPPNQPP 213
P P H YAQ Q + P P + PP
Sbjct: 180 PVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQILPPAALPPIVVA 239
Query: 214 NQQPN---NTSASLPSPL-----------YPWMRSQFERK-------RGRQTYTRYQTLE 252
P +A+ P+P MR ER+ R R + R Q LE
Sbjct: 240 PAAPAALAAVAAAAPAPQNDEELKQLRGELALMRQMIEREMNRLTDERLRGSPVRAQALE 299
Query: 253 LEKEFHFNRYLTRRRRIEI 271
L ++ F+ LTR ++I
Sbjct: 300 LMDDYGFDAGLTRDVAMQI 318
>gnl|CDD|214832 smart00817, Amelin, Ameloblastin precursor (Amelin). This family
consists of several mammalian Ameloblastin precursor
(Amelin) proteins. Matrix proteins of tooth enamel
consist mainly of amelogenin but also of non-amelogenin
proteins, which, although their volumetric percentage is
low, have an important role in enamel mineralisation.
One of the non-amelogenin proteins is ameloblastin, also
known as amelin and sheathlin. Ameloblastin (AMBN) is
one of the enamel sheath proteins which is though to
have a role in determining the prismatic structure of
growing enamel crystals.
Length = 411
Score = 28.7 bits (64), Expect = 4.1
Identities = 18/66 (27%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 151 HHHQHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPN 210
H Q + + HP P QP P Q + P Q+ P P
Sbjct: 84 HETQQYEYSLPVHPPPLPSQPSLQPQQPGLKPFLQPTALPTNQATPQKNGPQ--PPMHLG 141
Query: 211 QPPNQQ 216
QPP QQ
Sbjct: 142 QPPLQQ 147
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 29.0 bits (65), Expect = 4.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 191 QVVVNHQQTPPNQPPSQPPNQPPNQQPNN 219
++V+ + T +P QPP PP +P
Sbjct: 256 ELVLLPRATRLPEPEPQPPPPPPPPEPPE 284
Score = 27.8 bits (62), Expect = 9.3
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 13/57 (22%)
Query: 162 PHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPN 218
P P+ Q P PPP + P P+ + P+Q + Q P
Sbjct: 265 RLPEPEPQPPPPPPPP-----EPPEPEE-------EPDEPDQTDPDDGEETD-QIPE 308
>gnl|CDD|191194 pfam05111, Amelin, Ameloblastin precursor (Amelin). This family
consists of several mammalian Ameloblastin precursor
(Amelin) proteins. Matrix proteins of tooth enamel
consist mainly of amelogenin but also of non-amelogenin
proteins, which, although their volumetric percentage is
low, have an important role in enamel mineralisation.
One of the non-amelogenin proteins is ameloblastin, also
known as amelin and sheathlin. Ameloblastin (AMBN) is
one of the enamel sheath proteins which is though to
have a role in determining the prismatic structure of
growing enamel crystals.
Length = 410
Score = 28.8 bits (64), Expect = 4.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 168 QQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQP 208
Q PQ+ PQ M+ Q P Q ++ H+Q P++ P P
Sbjct: 141 QDTPQKAGPQPPMHPGQLPLQEAELPEVHEQVAPSEKPPTP 181
>gnl|CDD|222356 pfam13741, MRP-S25, Mitochondrial ribosomal protein S25. This is
the family of fungal 37S mitochondrial ribosomal S25
proteins.
Length = 229
Score = 28.6 bits (64), Expect = 4.4
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 186 PPQHHQVVVNHQQTPPNQ-PPSQPPNQPPNQQPNNTSASLPSPLYPWMRSQFERKRGRQT 244
P + VV + PP +PP + P+ + + S S +++ R+ RQ
Sbjct: 26 KPAWYDVVADI---PPTTLLTRKPPPRHPSTKKRRKTLSGFSKPQGVFKTRANRRDKRQK 82
Query: 245 YTR-YQTLELEKE 256
+R ++ +L+ E
Sbjct: 83 PSRLFRPPKLKYE 95
>gnl|CDD|235585 PRK05733, PRK05733, single-stranded DNA-binding protein;
Provisional.
Length = 172
Score = 28.0 bits (62), Expect = 4.6
Identities = 14/49 (28%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 169 QQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQP 217
Q Q Y Q P Q Q + Q S+P Q P QP
Sbjct: 116 QGDDQGGQGGGNYNQSAPRQQAQ-----RPQQAAQQQSRPAPQQPAPQP 159
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 28.8 bits (64), Expect = 4.7
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 18/79 (22%)
Query: 166 PQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQP--PSQPPNQPPNQQPNNTSAS 223
Q Q P + + PP T + P SQ QQP N +++
Sbjct: 44 GQNSPETQSPLTELQPSPLPPN-----------TTLDAPVSDSQGDESSSEQQPQNPNST 92
Query: 224 LPSPLYPWMRSQFERKRGR 242
P+P + R+R R
Sbjct: 93 EPAP-----PPKKRRRRKR 106
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase
inhibitor.
Length = 553
Score = 28.6 bits (64), Expect = 5.0
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 156 HHMNHHPHPHPQQQQPQQPPPQHMMY--AQQPPPQHHQVVVNHQQTPPNQPPSQ 207
HH +H P P P PPQ ++ A + P + N + PP+ P Q
Sbjct: 25 HHHHHTPSPSPPPPSSPSTPPQILLACNATRFPDTCVSSLSNAGRVPPDPKPIQ 78
>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed.
Length = 291
Score = 28.1 bits (62), Expect = 5.5
Identities = 24/101 (23%), Positives = 33/101 (32%), Gaps = 11/101 (10%)
Query: 167 QQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNT---SAS 223
Q P + Q PP V Q P P + P Q PN T S
Sbjct: 26 QAANATTPSSTKVEAPQSTPPSTK--VEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTK 83
Query: 224 LPSPLYPWMRS-----QFERKRGRQTYTRYQTLELEKEFHF 259
+ +P P + + K R YT+ +LE + E
Sbjct: 84 VETPQSPTTKQVPTEINPKFKDLRAYYTK-PSLEFKNEIGI 123
>gnl|CDD|224151 COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion
transport and metabolism].
Length = 296
Score = 28.0 bits (63), Expect = 6.1
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 152 HHQHHHMNHHPHPHPQQQ 169
H HH + H H H +
Sbjct: 2 HGAAHHSHGHDHAHDNPR 19
>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1
(LMP1). This family consists of several latent membrane
protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1
of EBV is a 62-65 kDa plasma membrane protein possessing
six membrane spanning regions, a short cytoplasmic
N-terminus and a long cytoplasmic carboxy tail of 200
amino acids. EBV latent membrane protein 1 (LMP1) is
essential for EBV-mediated transformation and has been
associated with several cases of malignancies. EBV-like
viruses in Cynomolgus monkeys (Macaca fascicularis) have
been associated with high lymphoma rates in
immunosuppressed monkeys.
Length = 382
Score = 28.1 bits (62), Expect = 6.2
Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 13/81 (16%)
Query: 151 HHHQHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPP------NQP 204
H +HHH + PHP Q H + +HH +V PP P
Sbjct: 191 HSDEHHHDDSLPHP-----QQATDDSGHESDSNSNEGRHHLLVSGAGDGPPLCSQNLGAP 245
Query: 205 PSQPPNQPPNQQPNNTSASLP 225
P N P Q P+NT + P
Sbjct: 246 GGGPDNGP--QDPDNTDDNGP 264
>gnl|CDD|233508 TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus splicing factor
family. Included in this family of heterogeneous
ribonucleoproteins are PTB (polypyrimidine tract binding
protein ) and hnRNP-L. These proteins contain four RNA
recognition motifs (rrm: pfam00067).
Length = 481
Score = 28.2 bits (63), Expect = 6.6
Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 6/83 (7%)
Query: 42 DPSMY---DPRQVHHYGQVPNNGQPVHGMPYPRFPPYDRMDIRNAAYYGAHEGGMEQYPR 98
D + H ++G HG P DRM +
Sbjct: 202 DQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRM---GPPHGPPSRYRPAYEAA 258
Query: 99 PDSPSMGHMGPQNGHQTPVVYAS 121
P +P++ GP G V+ S
Sbjct: 259 PLAPAISSYGPAGGGPGSVLMVS 281
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175).
Length = 820
Score = 28.3 bits (64), Expect = 6.7
Identities = 10/51 (19%), Positives = 12/51 (23%), Gaps = 5/51 (9%)
Query: 166 PQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQ 216
Q+ +Q Q Q P QQ Q Q Q
Sbjct: 615 FNAQRGEQQGQQGQGGQGQGQPGQQG-----QQGQGQQQGQQGQGGQGGQG 660
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated.
Length = 382
Score = 27.9 bits (63), Expect = 6.7
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 166 PQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQP 217
+ ++ + A + QQ PP + + QP N QP
Sbjct: 232 EEVEEEEAQASPAAEPATAQAAPAPKQEQ--QQAPPQRQEPEKEAQPVNVQP 281
>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria
(DUF2076). This domain, found in various hypothetical
prokaryotic proteins, has no known function. The domain,
however, is found in various periplasmic ligand-binding
sensor proteins.
Length = 234
Score = 27.7 bits (62), Expect = 7.1
Identities = 8/50 (16%), Positives = 10/50 (20%), Gaps = 8/50 (16%)
Query: 165 HPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPN 214
+ P P Q +P P Q Q P
Sbjct: 90 GAPRPPPAAPAVQPPAPPARPGWG--------SGGPSQQGAGQQPGYAQP 131
>gnl|CDD|189987 pfam01440, Gemini_AL2, Geminivirus AL2 protein. Geminiviruses are
small, ssDNA-containing plant viruses. Geminiviruses
contain three ORFs (designated AL1, AL2, and AL3) that
overlap and are specified by multiple polycistronic
mRNAs. The AL2 gene product transactivates expression of
TGMV coat protein gene, and BR1 movement protein.
Length = 134
Score = 27.1 bits (61), Expect = 7.5
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 154 QHHHMNHHPHPHPQQQQPQQ 173
H HHP P P Q QP++
Sbjct: 88 IHLEQRHHPSPDPVQPQPEE 107
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and
modification].
Length = 2365
Score = 28.0 bits (62), Expect = 8.1
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 33/91 (36%)
Query: 171 PQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPN-QPPSQPPNQPP---------NQQPN-- 218
P PPP PPP PP +PPSQPP PP +Q +
Sbjct: 6 PGNPPP--------PPP------------PPGFEPPSQPPPPPPPGVNVKKRSRKQLSIV 45
Query: 219 -NTSASLPSPLYPWMRSQFERKRGRQTYTRY 248
+ +P+Y S K G + T +
Sbjct: 46 GDILGHSGNPIYSLRVSDKPVKLGNKAKTLH 76
>gnl|CDD|239320 cd03022, DsbA_HCCA_Iso, DsbA family,
2-hydroxychromene-2-carboxylate (HCCA) isomerase
subfamily; HCCA isomerase is a glutathione (GSH)
dependent enzyme involved in the naphthalene catabolic
pathway. It converts HCCA, a hemiketal formed
spontaneously after ring cleavage of
1,2-dihydroxynapthalene by a dioxygenase, into
cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the
fourth reaction in a six-step pathway that converts
napthalene into salicylate. HCCA isomerase is unique to
bacteria that degrade polycyclic aromatic compounds. It
is closely related to the eukaryotic protein, GSH
transferase kappa (GSTK).
Length = 192
Score = 27.2 bits (61), Expect = 8.1
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 65 HGMPY---PRFPPYDRMDIRNAAYYGAHEGGMEQY 96
+G+P PRFPP +R A A E +
Sbjct: 71 YGIPLRFPPRFPPNTLRAMRAALAAQAEGDAAEAF 105
>gnl|CDD|217509 pfam03353, Lin-8, Ras-mediated vulval-induction antagonist. LIN-8
is a nuclear protein, present at the sites of
transcriptional repressor complexes, which interacts
with LIN-35 Rb.Lin35 Rb is a product of the class B
synMuv gene lin-35 which silences genes required for
vulval specification through chromatin modification and
remodelling. The biological role of the interaction has
not yet been determined however predictions have been
made. The interaction shows that class A synMuv genes
control vulval induction through the transcriptional
regulation of gene expression. LIN-8 normally functions
as part of a protein complex however when the complex is
absent, other family members can partially replace LIN-8
activity.
Length = 316
Score = 27.7 bits (62), Expect = 8.2
Identities = 10/60 (16%), Positives = 14/60 (23%), Gaps = 8/60 (13%)
Query: 171 PQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSASLPSPLYP 230
PQ+ P PQ Q P S + ++ P P
Sbjct: 195 PQEVKQSVPAQQAPPNPQ--------QPMPSASSESATSKSASTSRESSPQPQSPPPRRV 246
>gnl|CDD|238499 cd01017, AdcA, Metal binding protein AcdA. These proteins have
been shown to function in the ABC uptake of Zn2+ and
Mn2+ and in competence for genetic transformation and
adhesion. The AcdA proteins belong to the TroA
superfamily of helical backbone metal receptor proteins
that share a distinct fold and ligand binding mechanism.
They are comprised of two globular subdomains connected
by a long alpha helix and they bind their ligand in the
cleft between these domains. In addition, many of these
proteins have a low complexity region containing metal
binding histidine-rich motif (repetitive HDH sequence).
Length = 282
Score = 27.6 bits (62), Expect = 8.3
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 142 LVDPTLNNHHHHQHHHMNHHPHPH 165
L + H H H H + PH
Sbjct: 91 LKAGGAEHDHDHSHSHHHGDYDPH 114
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional.
Length = 991
Score = 28.1 bits (62), Expect = 8.4
Identities = 15/64 (23%), Positives = 18/64 (28%), Gaps = 2/64 (3%)
Query: 166 PQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPP--NQQPNNTSAS 223
P + PP +PP P P PP PP Q+P
Sbjct: 737 PAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTP 796
Query: 224 LPSP 227
P P
Sbjct: 797 QPPP 800
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 27.8 bits (62), Expect = 8.6
Identities = 12/72 (16%), Positives = 15/72 (20%), Gaps = 1/72 (1%)
Query: 162 PHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTS 221
P P P PP P P+ P P +
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAP-PARSADP 440
Query: 222 ASLPSPLYPWMR 233
A+ S W
Sbjct: 441 AAAASAGDRWRA 452
>gnl|CDD|220924 pfam10986, DUF2796, Protein of unknown function (DUF2796). This
bacterial family of proteins has no known function.
Length = 161
Score = 27.3 bits (61), Expect = 8.9
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 141 DLVDPTLNNHHHHQHHHMNHHPHPH 165
+ ++H HH H H +HH
Sbjct: 77 ESSLFGDHDHDHHDHDHHDHHDDHE 101
>gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional.
Length = 499
Score = 27.7 bits (61), Expect = 9.4
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 224 LPSPLYPWMRSQFERKRGRQTYTRYQ 249
PL PW+R + +Q R Q
Sbjct: 30 AEDPLPPWLRKEKACALRQQRRHRLQ 55
>gnl|CDD|237381 PRK13419, PRK13419, F0F1 ATP synthase subunit A; Provisional.
Length = 342
Score = 27.4 bits (61), Expect = 9.6
Identities = 5/14 (35%), Positives = 5/14 (35%)
Query: 150 HHHHQHHHMNHHPH 163
H H H H H
Sbjct: 329 HEGHDEEHAEAHGH 342
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.133 0.432
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,946,135
Number of extensions: 1610236
Number of successful extensions: 5239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3442
Number of HSP's successfully gapped: 441
Length of query: 317
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 220
Effective length of database: 6,635,264
Effective search space: 1459758080
Effective search space used: 1459758080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.7 bits)