RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3281
(317 letters)
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 104 bits (261), Expect = 5e-29
Identities = 44/75 (58%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Query: 226 SPLYPWMRSQFERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIW 285
+P W+ ++ ++ R YT++QTLELEKEF FN YLTR RR E+A L LTERQ+KIW
Sbjct: 2 NPAANWLHAR-STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIW 60
Query: 286 FQNRRMKWKKENKSK 300
FQNRRMK KK NK +
Sbjct: 61 FQNRRMKMKKINKDR 75
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 100 bits (250), Expect = 1e-27
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 239 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 298
+R R ++T+ Q LEKEF Y R +A + L E +I++WF NRR KW++E K
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 61
Query: 299 SKD 301
++
Sbjct: 62 LRN 64
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 99.9 bits (249), Expect = 1e-27
Identities = 55/56 (98%), Positives = 55/56 (98%)
Query: 242 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 297
RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL LTERQIKIWFQNRRMKWKKEN
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 56
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 99.1 bits (247), Expect = 3e-27
Identities = 27/57 (47%), Positives = 39/57 (68%)
Query: 239 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 295
K G+ ++ QT+ELEK+F +YL+ R +A L L+ERQ+K WFQNRR KW++
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 92.6 bits (230), Expect = 1e-24
Identities = 27/57 (47%), Positives = 42/57 (73%)
Query: 239 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 295
++ R Y++ Q ELE+E+ N+++T+ +R +I+ A L+ERQI IWFQNRR+K KK
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 90.7 bits (225), Expect = 6e-24
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 238 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 297
++R R T++ Q ELE+ F +Y R E+A LTE +I++WFQNRR + +K++
Sbjct: 2 QRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 61
Query: 298 KS 299
S
Sbjct: 62 TS 63
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 89.9 bits (223), Expect = 1e-23
Identities = 16/62 (25%), Positives = 25/62 (40%)
Query: 238 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 297
R R Q L + N + ++ L+ R I++WFQN+R K KK +
Sbjct: 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62
Query: 298 KS 299
Sbjct: 63 IM 64
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 88.4 bits (219), Expect = 4e-23
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 238 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 297
R++ R +++ Q ELE+ F +YL+ R +A + LT Q+KIWFQN R K K++
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61
Query: 298 KSK 300
K K
Sbjct: 62 KDK 64
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 87.4 bits (216), Expect = 2e-22
Identities = 38/87 (43%), Positives = 47/87 (54%), Gaps = 14/87 (16%)
Query: 226 SPLYPWMRS--------------QFERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEI 271
+ + WM+ R +T Q ELEKEFHFN+YL+R RR+EI
Sbjct: 1 ARTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEI 60
Query: 272 AHALCLTERQIKIWFQNRRMKWKKENK 298
A L L E Q+KIWFQNRRMK KK +
Sbjct: 61 AATLELNETQVKIWFQNRRMKQKKRER 87
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 86.1 bits (213), Expect = 2e-22
Identities = 26/57 (45%), Positives = 37/57 (64%)
Query: 239 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 295
++ R +T Q L LE++F +YL+ R E + +L LTE Q+KIWFQNRR K K+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 85.7 bits (212), Expect = 4e-22
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 240 RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 295
+ R T + LE+ F + + + + +A L L + +++WF NRR + K+
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 56
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 84.1 bits (208), Expect = 1e-21
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 240 RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 292
R R ++ Q L++EF+ NRYLT RRR +++ L L E QIKIWFQN R K
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 83.8 bits (207), Expect = 2e-21
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 240 RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 296
R R +TR Q LEKEF+ Y++R RR E+A L L E IK+WFQNRRMK K++
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 57
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 83.6 bits (206), Expect = 4e-21
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 15/74 (20%)
Query: 240 RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIA---------------HALCLTERQIKI 284
R T+ + +E F+ N+Y +R EIA +T ++
Sbjct: 2 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 61
Query: 285 WFQNRRMKWKKENK 298
WF NRR + K+
Sbjct: 62 WFANRRKEIKRRAN 75
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 82.3 bits (203), Expect = 7e-21
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 239 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 296
+R R +T Q +LE F NRY R EIA LTE ++++WF+NRR KW+K
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 59
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 81.6 bits (201), Expect = 1e-20
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 239 KRGRQTYTRYQTLELEKEFHF-NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK-E 296
G T T Q LE F+ N++ IA LTE Q + WF+ R +W++ E
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61
Query: 297 NKSKDGGS 304
+ S
Sbjct: 62 GLPSECRS 69
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 81.2 bits (200), Expect = 2e-20
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 238 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 297
RKR R + LE F + ++ IA+ L L + +++WF NRR K K+ +
Sbjct: 8 RKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRSS 67
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 80.4 bits (198), Expect = 4e-20
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 239 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 298
+R R T+T Q ELE+ F RYLT R +++ L L Q+KIWF+NRR + K ++
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 61
Query: 299 SKDGGS 304
S
Sbjct: 62 QHKDQS 67
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 78.9 bits (194), Expect = 2e-19
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 238 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 297
+++ R +T+ QT ELE+ F RYL+ R +A + LT Q+KIWFQN R K K+
Sbjct: 9 KRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQ 68
Query: 298 KSKD 301
K
Sbjct: 69 NEKG 72
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 77.1 bits (190), Expect = 5e-19
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 239 KRGRQTYTRYQTLELEKEFHFNR---YLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 295
+ R +T+ LE F N YL + + L+ QIK W NRR K K
Sbjct: 1 RGHR--FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 75.9 bits (187), Expect = 1e-18
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 246 TRYQTLELEKEF-HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 295
T LEK F ++ +R ++ L R I+ WF+ RR + K
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 75.3 bits (185), Expect = 2e-18
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 242 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 294
+ + + LE+ F + L + + E+A +T Q+++WF N+RM+ K
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 74.9 bits (184), Expect = 3e-18
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 242 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 290
R +T Q L F N+ ++ +I I+ L L + +F N R
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 74.8 bits (184), Expect = 4e-18
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 239 KRGRQTYTRYQTLELEKEF---HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 295
K R ++ T + + Y T + +IA LT Q+ WF N R + +
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 73.8 bits (181), Expect = 9e-18
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 242 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 297
R + + LEK F N+ T IA L + + I++WF NRR K K+ N
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRIN 57
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 74.0 bits (181), Expect = 1e-17
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 234 SQFERKRGRQTYTRYQTLELEKEFH-FNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 292
S R R + L+ H Y + ++ L L + I +FQN+R
Sbjct: 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYH 62
Query: 293 WKKENKS 299
K S
Sbjct: 63 VKHSGPS 69
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 73.8 bits (181), Expect = 1e-17
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 239 KRGRQTYTRYQTLELEK---EFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 295
+R R+ + + T L + N Y + + E+A +T Q+ WF N+R+++KK
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 61
Query: 296 ENK 298
Sbjct: 62 NIG 64
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 70.5 bits (172), Expect = 3e-16
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 239 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 298
+ + T Q L+ F + LT + LT R+I WF ++ + +
Sbjct: 5 PQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 64
Query: 299 SKDGG-SDAGS 308
+ S+AGS
Sbjct: 65 KMEIDESNAGS 75
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 69.0 bits (169), Expect = 5e-16
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 241 GRQTYTRY---QTLELEKEF-HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 294
G + LEK F +Y +R ++ L + R+I+ WF++RR + K
Sbjct: 1 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 65.2 bits (158), Expect = 2e-14
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 21/78 (26%)
Query: 242 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL---------------------CLTER 280
R + L + + + ++ R + +TE
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 281 QIKIWFQNRRMKWKKENK 298
++ WF NRR + +K
Sbjct: 61 RVYNWFANRRKEEAFRHK 78
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 58.2 bits (140), Expect = 6e-12
Identities = 12/69 (17%), Positives = 23/69 (33%)
Query: 239 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENK 298
+ T+ Q L+ F ++ R ++ L +I WF + R K
Sbjct: 4 GSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63
Query: 299 SKDGGSDAG 307
+ +G
Sbjct: 64 KWFRDNASG 72
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 58.5 bits (141), Expect = 7e-12
Identities = 9/64 (14%), Positives = 18/64 (28%), Gaps = 4/64 (6%)
Query: 237 ERKRGRQTYTRYQTLELEKEFH----FNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 292
KR R +T Q ++ + + + + +KIW N +
Sbjct: 16 TTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNS 75
Query: 293 WKKE 296
Sbjct: 76 GPSS 79
>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId:
204285]}
Length = 162
Score = 28.5 bits (63), Expect = 0.58
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 12/72 (16%)
Query: 130 NGIIPGPE---SPNDLVDPTLNNH---------HHHQHHHMNHHPHPHPQQQQPQQPPPQ 177
NG I GP + D V+ T+ N+ H H + + PP
Sbjct: 61 NGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTECPIPPKG 120
Query: 178 HMMYAQQPPPQH 189
+ Q+
Sbjct: 121 GQRTYRWRARQY 132
>d1iuja_ d.58.4.5 (A:) Hypothetical protein TT1380 {Thermus
thermophilus [TaxId: 274]}
Length = 102
Score = 27.7 bits (61), Expect = 0.62
Identities = 3/41 (7%), Positives = 11/41 (26%)
Query: 154 QHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVV 194
+ P ++ + + + +VV+
Sbjct: 59 EEAFRAWTESPAFKEGHARSGTLPKEAFLGPNRLEAFEVVL 99
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 28.2 bits (61), Expect = 1.1
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 7/137 (5%)
Query: 78 MDIRNAAYYGAHEGGMEQYPRPDSPSMGHMGPQNGHQTPVVYASCKLQAAVGNGIIPGPE 137
M + + + EQYP P + G N ++ + + + PG
Sbjct: 1 MKVTKSEIVISAVK-PEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKT 59
Query: 138 SPNDLVDPTLNNHH------HHQHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPPQHHQ 191
+ H + + + Q +H
Sbjct: 60 QTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAP 119
Query: 192 VVVNHQQTPPNQPPSQP 208
+ Q + P
Sbjct: 120 SNDDVQMYEFLKYYGIP 136
>d1uzea_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Human
(Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 28.6 bits (63), Expect = 1.1
Identities = 25/175 (14%), Positives = 48/175 (27%), Gaps = 21/175 (12%)
Query: 23 HHQQHHYGATVLPQNNGVEDPSMYDPRQVHH----YGQVPNNGQPVHGMPYPRFPPYDRM 78
+ H Y L ++ G + ++ P H + Q +N + P+P P D
Sbjct: 205 YLNLHAYVRRALHRHYGAQHINLEGPIPAHLLGNMWAQTWSNIYDLVV-PFPSAPSMDTT 263
Query: 79 DIRNAAYYGAHE-----------GGMEQYPRPDSPSMGHMGPQNGHQTPVVYASCKLQAA 127
+ + G+ P P +G + V +AS
Sbjct: 264 EAMLKQGWTPRRMFKEADDFFTSLGLLPVPPEFWNKSMLEKPTDG-REVVCHASAWDFYN 322
Query: 128 VGNGIIPGPESPNDLVDPTLNNHHHHQHHHMNHHPHPHPQQQQPQQPPPQHMMYA 182
+ I V+ HH+ H+ + ++ A
Sbjct: 323 GKDFRI----KQCTTVNLEDLVVAHHEMGHIQYFMQYKDLPVALREGANPGFHEA 373
>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria
gonorrhoeae, AniA [TaxId: 485]}
Length = 151
Score = 27.7 bits (61), Expect = 1.3
Identities = 10/65 (15%), Positives = 15/65 (23%), Gaps = 5/65 (7%)
Query: 130 NGIIPGPE---SPNDLVDPTLNNHHHHQHHHMNHHPHPHPQQQQPQQP--PPQHMMYAQQ 184
+G +PG D V+ +N+ H Q P
Sbjct: 52 DGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSF 111
Query: 185 PPPQH 189
Q
Sbjct: 112 KALQP 116
>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes
xylosoxidans [TaxId: 85698]}
Length = 157
Score = 27.4 bits (60), Expect = 1.5
Identities = 14/74 (18%), Positives = 19/74 (25%), Gaps = 6/74 (8%)
Query: 130 NGIIPGPE---SPNDLVDPTLNNHHHHQHHHMNHHPHPHPQQQ---QPQQPPPQHMMYAQ 183
NG +PGP ND V+ L N + H Q P +
Sbjct: 58 NGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDFHAATGALGGGALTQVNPGEETTLRF 117
Query: 184 QPPPQHHQVVVNHQ 197
+ V
Sbjct: 118 KATKPGVFVYHCAP 131
>d2c5ra1 a.251.1.1 (A:66-129) Early protein gp16.7 {Bacteriophage
phi-29 [TaxId: 10756]}
Length = 64
Score = 25.8 bits (56), Expect = 1.7
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 270 EIAHALCLTERQIKIWFQNRRMKWKKENKSK 300
++ + +E+++ + + +R WK EN+ K
Sbjct: 27 DLVNQRLQSEQEVLNYIETQRTYWKLENQKK 57
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 27.2 bits (60), Expect = 1.8
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 164 PHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQ 216
P + + P QH+ P Q H Q S + PP +Q
Sbjct: 17 PQYKYAAGVRNPQQHL---NAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQ 66
Score = 26.1 bits (57), Expect = 4.2
Identities = 7/51 (13%), Positives = 9/51 (17%)
Query: 162 PHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQP 212
P P YA + Q T +P
Sbjct: 2 PLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEP 52
>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 153
Score = 27.0 bits (59), Expect = 2.2
Identities = 11/53 (20%), Positives = 14/53 (26%), Gaps = 3/53 (5%)
Query: 130 NGIIPGPES---PNDLVDPTLNNHHHHQHHHMNHHPHPHPQQQQPQQPPPQHM 179
+G IPGP D V+ TL N + H
Sbjct: 56 DGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFHAATGALGGGGLTLINPG 108
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima
[TaxId: 2336]}
Length = 429
Score = 26.8 bits (58), Expect = 3.6
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 247 RYQTLELEKEF-HFNRYLTRRRRIEIAHALCLTE 279
RY ++ + +Y R +E+A E
Sbjct: 3 RYSLSPMKDLWTEEAKY-RRWLEVELAVTRAYEE 35
>d1dgfa_ e.5.1.1 (A:) Catalase I {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 26.4 bits (58), Expect = 5.3
Identities = 8/61 (13%), Positives = 16/61 (26%)
Query: 150 HHHHQHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPP 209
++ + + P P + P H++ N+ P N P
Sbjct: 320 NYFAEVEQIAFDPSNMPPGIEASPDKMLQGRLFAYPDTHRHRLGPNYLHIPVNCPYRARV 379
Query: 210 N 210
Sbjct: 380 A 380
>d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 263
Score = 26.0 bits (55), Expect = 5.5
Identities = 9/126 (7%), Positives = 28/126 (22%)
Query: 151 HHHQHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPN 210
+ ++ ++ Y + +++ P P
Sbjct: 138 QMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTRLAFPDGIQMYEEEPSRVMPYVKKA 197
Query: 211 QPPNQQPNNTSASLPSPLYPWMRSQFERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIE 270
+ S L ++ + ++ + H + Y +
Sbjct: 198 LSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHNDVYKNGKVAKY 257
Query: 271 IAHALC 276
I +C
Sbjct: 258 IFDNIC 263
>d2dmba1 b.1.18.10 (A:8-118) Filamin b {Human (Homo sapiens)
[TaxId: 9606]}
Length = 111
Score = 25.0 bits (54), Expect = 6.2
Identities = 7/48 (14%), Positives = 13/48 (27%)
Query: 22 EHHQQHHYGATVLPQNNGVEDPSMYDPRQVHHYGQVPNNGQPVHGMPY 69
A V+ +G D + + V G + P+
Sbjct: 43 LTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGVDIPNSPF 90
>d1knwa1 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarboxylase
LysA {Escherichia coli [TaxId: 562]}
Length = 174
Score = 25.7 bits (56), Expect = 6.4
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 140 NDLVDPTLNNHHHHQHHHMNHHPHPHP 166
NDL+ P + +HH
Sbjct: 55 NDLMRPAMYGSYHHISALAADGRSLEH 81
>d1gwma_ b.18.1.19 (A:) Non-catalytic protein 1, Ncp1 {Piromyces
equi [TaxId: 99929]}
Length = 153
Score = 25.4 bits (55), Expect = 7.4
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 124 LQAAVGNG-------IIPGPESPNDLVDPTLNNHHHHQH 155
Q A GNG ++ S +D VDP HHHH H
Sbjct: 115 FQDAPGNGDRIWIKNLVHSTGSADDFVDPINLEHHHHHH 153
>d1mnna_ b.2.5.7 (A:) DNA-binding domain from NDT80 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 303
Score = 25.8 bits (56), Expect = 7.4
Identities = 6/88 (6%), Positives = 20/88 (22%), Gaps = 3/88 (3%)
Query: 170 QPQQPPPQHMMYAQQPPPQHHQVVVNHQQTPPNQPPSQPPNQPPNQQPNNTSASLPSPLY 229
P P + ++ ++ + + +
Sbjct: 159 VPSPLPKHQTIREASNVRNITKMKKYDSTFYLHRDHVNYEEYGVDSLLFSYPEDSIQKVA 218
Query: 230 PWMRSQFE---RKRGRQTYTRYQTLELE 254
+ R QF + ++ +L +
Sbjct: 219 RYERVQFASSISVKKPSQQNKHFSLHVI 246
>d1pq4a_ c.92.2.2 (A:) Periplasmic zinc binding protein ZnuA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 289
Score = 25.7 bits (55), Expect = 7.5
Identities = 9/71 (12%), Positives = 17/71 (23%), Gaps = 1/71 (1%)
Query: 127 AVGNGIIPGPESPNDLVDPTLNNHHHHQHHHMNHHPHPHPQ-QQQPQQPPPQHMMYAQQP 185
GI P +D H H H +H + + H+ +
Sbjct: 81 DSAQGITPLEMEKHDHSHGEEEGHDDHSHDGHDHGSESEKEKAKGALMVADPHIWLSPTL 140
Query: 186 PPQHHQVVVNH 196
+ +
Sbjct: 141 VKRQATTIAKE 151
>d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic
subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 171
Score = 25.4 bits (54), Expect = 8.9
Identities = 7/62 (11%), Positives = 12/62 (19%)
Query: 128 VGNGIIPGPESPNDLVDPTLNNHHHHQHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPP 187
VG GI+ + P L + + + A
Sbjct: 17 VGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQ 76
Query: 188 QH 189
Sbjct: 77 NA 78
>d1wgoa_ b.1.3.1 (A:) VPS10 domain-containing receptor SorCS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 123
Score = 24.6 bits (53), Expect = 9.0
Identities = 9/33 (27%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 194 VNHQQTP-PNQPPSQPPNQPPNQQPNNTSASLP 225
V+ QQ+ Q P PP A P
Sbjct: 12 VDMQQSQVQLQCPLTPPRGLQVSIQGEAVAVRP 44
>d1vkma_ c.138.1.1 (A:) Hypothetical protein TM1464 {Thermotoga
maritima [TaxId: 2336]}
Length = 292
Score = 25.6 bits (56), Expect = 9.0
Identities = 6/22 (27%), Positives = 8/22 (36%), Gaps = 9/22 (40%)
Query: 59 NNGQPV---------HGMPYPR 71
G+PV HG+P
Sbjct: 16 EKGKPVVGMETTVFVHGLPRKE 37
>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate
dehydrogenase (PP module) {Human (Homo sapiens) [TaxId:
9606]}
Length = 361
Score = 25.6 bits (55), Expect = 9.8
Identities = 3/53 (5%), Positives = 9/53 (16%)
Query: 138 SPNDLVDPTLNNHHHHQHHHMNHHPHPHPQQQQPQQPPPQHMMYAQQPPPQHH 190
+P D + H ++ + +
Sbjct: 80 NPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKNFY 132
>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2
[TaxId: 5325]}
Length = 130
Score = 24.6 bits (53), Expect = 10.0
Identities = 9/66 (13%), Positives = 15/66 (22%), Gaps = 5/66 (7%)
Query: 130 NGIIPGPE---SPNDLVDPTLNNHHHHQHHHMNHHPHPH--PQQQQPQQPPPQHMMYAQQ 184
NG+ P P D + + + + H H Q P +
Sbjct: 28 NGVFPSPLITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTNWADGPAFVNQCPI 87
Query: 185 PPPQHH 190
Sbjct: 88 ASGHSF 93
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.133 0.432
Gapped
Lambda K H
0.267 0.0441 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,354,780
Number of extensions: 68377
Number of successful extensions: 507
Number of sequences better than 10.0: 1
Number of HSP's gapped: 452
Number of HSP's successfully gapped: 106
Length of query: 317
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,240,546
Effective search space: 287806672
Effective search space used: 287806672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.9 bits)