BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3287
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From
Stenotrophomonas Maltophilia
Length = 741
Score = 38.5 bits (88), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 71 LAAGIPSYVTQEEFSRYQGYWWQPKTTDGVYRILYEEIDESDVKI 115
+ GI +V EE R+ GYWW P + I Y IDES V +
Sbjct: 195 IGNGIAEFVADEEMDRHTGYWWAPDDS----AIAYARIDESPVPV 235
Score = 32.0 bits (71), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 24 LAAGIPSYVTQEEFSRYQGYWWQP 47
+ GI +V EE R+ GYWW P
Sbjct: 195 IGNGIAEFVADEEMDRHTGYWWAP 218
>pdb|3AKJ|A Chain A, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKJ|B Chain B, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKK|A Chain A, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKK|B Chain B, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKK|C Chain C, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKK|D Chain D, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKL|A Chain A, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKL|B Chain B, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKL|C Chain C, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKL|D Chain D, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
Length = 325
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 89 GYWWQPKTTDGVYRILYEEIDESDVKIYNFPSSF 122
G P+ D V + + IDE + +IYNFP S
Sbjct: 181 GSCLYPQADDVVCQKVLSNIDELNARIYNFPQSI 214
>pdb|3RIM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
Length = 700
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 45 WQPKTTGSTQRLTFAHKGGRNLTDDPLAAGIPSYVTQEEFSRYQGYWWQPKTTDGV 100
W KT G + F H G +T PL G+ S V SRY+ + P G
Sbjct: 112 WGSKTPGHPE---FRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGA 164
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 46 QPKTTGST--QRLTFAHKGGRNLTDDPLAAGIPSYVTQEEFSRYQGYWWQPKTTDGVYRI 103
+P TG + Q + HK R + D P + + + Y K + R+
Sbjct: 71 EPPKTGYSGEQVAVYLHKLARQFSPDR-----PFDLVAHDIGIWNTYPMVVKNQADIARL 125
Query: 104 LYEEIDESDVKIYNFPS 120
+Y E D +IY FP+
Sbjct: 126 VYMEAPIPDARIYRFPA 142
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 46 QPKTTGST--QRLTFAHKGGRNLTDDPLAAGIPSYVTQEEFSRYQGYWWQPKTTDGVYRI 103
+P TG + Q + HK R + D P + + + Y K + R+
Sbjct: 71 EPPKTGYSGEQVAVYLHKLARQFSPDR-----PFDLVAHDIGIWNTYPMVVKNQADIARL 125
Query: 104 LYEEIDESDVKIYNFPS 120
+Y E D +IY FP+
Sbjct: 126 VYMEAPIPDARIYRFPA 142
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 46 QPKTTGST--QRLTFAHKGGRNLTDDPLAAGIPSYVTQEEFSRYQGYWWQPKTTDGVYRI 103
+P TG + Q + HK R + D P + + + Y K + R+
Sbjct: 71 EPPKTGYSGEQVAVYLHKLARQFSPDR-----PFDLVAHDIGIWNTYPMVVKNQADIARL 125
Query: 104 LYEEIDESDVKIYNFPS 120
+Y E D +IY FP+
Sbjct: 126 VYMEAPIPDARIYRFPA 142
>pdb|3RCQ|A Chain A, Crystal Structure Of Human Aspartate Beta-Hydroxylase
Isoform A
Length = 197
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 44 WWQPKTTGSTQRLTFAHKGGRNLTDDPLAAGIPS---YVTQEEFSRYQGYWWQ 93
WW PK TG T+ + + + + D+ LA + ++ ++E R +G W Q
Sbjct: 14 WWTPKETGYTELVKSLERNWKLIRDEGLAVMDKAKGLFLPEDENLREKGDWSQ 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,149,926
Number of Sequences: 62578
Number of extensions: 173897
Number of successful extensions: 372
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 362
Number of HSP's gapped (non-prelim): 16
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)