RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3287
(122 letters)
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase
family S9, hydrolase; 2.80A {Stenotrophomonas
maltophilia}
Length = 741
Score = 60.5 bits (147), Expect = 4e-12
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 44 WWQPKTTGSTQRLTFAHKGGRNLTDDPLAAGIPSYVTQEEFSRYQGYWWQPKTTDGVYRI 103
W +G +LT G + GI +V EE R+ GYWW P D I
Sbjct: 175 WVIDLASGRQMQLT--ADGSTTIG-----NGIAEFVADEEMDRHTGYWWAP---DD-SAI 223
Query: 104 LYEEIDESDVKIYNFPS 120
Y IDES V +
Sbjct: 224 AYARIDESPVPVQKRYE 240
Score = 40.9 bits (96), Expect = 3e-05
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 4 GSTQRLTFAHKGGRNLTDDPLAAGIPSYVTQEEFSRYQGYWWQP 47
G +LT G + GI +V EE R+ GYWW P
Sbjct: 182 GRQMQLT--ADGSTTIG-----NGIAEFVADEEMDRHTGYWWAP 218
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes,
novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A
{Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A*
2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A*
1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A*
3bjm_A* 3eio_A* ...
Length = 740
Score = 58.3 bits (141), Expect = 3e-11
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 44 WWQPKTTGSTQRLTFAHKGGRNLTDDPLAAGIPSYVTQEE-FSRYQGYWWQPKTTDGVYR 102
+ + + + R+T+ K +D + GI +V +EE FS Y WW P +G +
Sbjct: 135 YVKIEPNLPSYRITWTGK------EDIIYNGITDWVYEEEVFSAYSALWWSP---NGTF- 184
Query: 103 ILYEEIDESDVKIYNFP 119
+ Y + ++++V + +
Sbjct: 185 LAYAQFNDTEVPLIEYS 201
Score = 37.5 bits (87), Expect = 4e-04
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 4 GSTQRLTFAHKGGRNLTDDPLAAGIPSYVTQEE-FSRYQGYWWQP 47
+ R+T+ K +D + GI +V +EE FS Y WW P
Sbjct: 142 LPSYRITWTGK------EDIIYNGITDWVYEEEVFSAYSALWWSP 180
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase
6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG
NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1
c.69.1.24
Length = 723
Score = 57.5 bits (139), Expect = 4e-11
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
Query: 44 WWQPKTTGSTQRLTFAHKGGRNLTDDPLAAGIPSYVTQEE-FSRYQGYWWQPKTTDGVYR 102
++ R+ K + + G+ ++ +EE + +WW P DG R
Sbjct: 137 YYCAHVGKQAIRVVSTGK------EGVIYNGLSDWLYEEEILKTHIAHWWSP---DG-TR 186
Query: 103 ILYEEIDESDVKIYNFPS 120
+ Y I++S V I P+
Sbjct: 187 LAYAAINDSRVPIMELPT 204
Score = 36.7 bits (85), Expect = 7e-04
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 4 GSTQRLTFAHKGGRNLTDDPLAAGIPSYVTQEE-FSRYQGYWWQP 47
R+ K + + G+ ++ +EE + +WW P
Sbjct: 144 KQAIRVVSTGK------EGVIYNGLSDWLYEEEILKTHIAHWWSP 182
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast
activation protein alpha,fapalpha,
dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo
sapiens}
Length = 719
Score = 56.0 bits (135), Expect = 1e-10
Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 44 WWQPKTTGSTQRLTFAHKGGRNLTDDPLAAGIPSYVTQEE-FSRYQGYWWQPKTTDGVYR 102
+ + + ++TF + ++ + GIP +V +EE + WW P +G
Sbjct: 133 YLKQRPGDPPFQITFNGR------ENKIFNGIPDWVYEEEMLATKYALWWSP---NG-KF 182
Query: 103 ILYEEIDESDVKIYNFPS 120
+ Y E +++D+ + +
Sbjct: 183 LAYAEFNDTDIPVIAYSY 200
Score = 35.6 bits (82), Expect = 0.002
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 4 GSTQRLTFAHKGGRNLTDDPLAAGIPSYVTQEE-FSRYQGYWWQP 47
++TF + ++ + GIP +V +EE + WW P
Sbjct: 140 DPPFQITFNGR------ENKIFNGIPDWVYEEEMLATKYALWWSP 178
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl
oligopeptidase family, serine PR proline-specific
peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas
gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Length = 706
Score = 47.8 bits (114), Expect = 1e-07
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 78 YVTQEEFSRYQGYWWQPKTTDGVYRILYEEIDESDVKIYNFPSS 121
V Q EF +G +W P G + + +D+S VK
Sbjct: 174 AVHQREFGIEKGTFWSP---KGSC-LAFYRMDQSMVKPTPIVDY 213
Score = 32.0 bits (73), Expect = 0.030
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 31 YVTQEEFSRYQGYWWQP 47
V Q EF +G +W P
Sbjct: 174 AVHQREFGIEKGTFWSP 190
>3bfx_A Sulfotransferase 1C2; PAP, structural genomics, PSI, protein
structure initiative, structural genomics consortium,
SGC, alternative splicing; HET: A3P; 1.80A {Homo
sapiens} SCOP: c.37.1.5
Length = 296
Score = 30.5 bits (69), Expect = 0.12
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 81 QEEFSRYQGYWWQPKTTDGVYRILYEEIDESDVKIYNFPSS 121
Q + +G QP T D +I E D+ I +P +
Sbjct: 10 QIKLKEVEGTLLQPATVDNWSQIQSFEAKPDDLLICTYPKA 50
>2ffc_A Orotidine 5-monophosphate decarboxylase; PV-PF10_0225, SGC,
structural genomics, struc genomics consortium, lyase;
HET: U5P; 1.70A {Plasmodium vivax} SCOP: c.1.2.3 PDB:
2guu_A*
Length = 353
Score = 29.4 bits (65), Expect = 0.26
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 22 DPLAAGIPSYVTQEEFSRYQGYWWQPKTTGSTQRLTFAHKGGRNLTD-----DPLAAGIP 76
DP A I S++ E+ + YQ +GS+ + + G L L A P
Sbjct: 41 DPDEADIKSFMQSEKQNGYQSVKKNLSNSGSSSSSSNSSSGKGELFAPQMGGQMLLAETP 100
Query: 77 SYVTQEE 83
QE+
Sbjct: 101 PKEAQEK 107
>1fmj_A Retinol dehydratase; sulfotransferase, adenosine 3',5'-
diphosphate; HET: A3P RTL; 2.00A {Spodoptera frugiperda}
SCOP: c.37.1.5 PDB: 1fml_A* 1x8l_A* 1x8k_A* 1x8j_A*
Length = 351
Score = 29.2 bits (65), Expect = 0.31
Identities = 9/55 (16%), Positives = 19/55 (34%)
Query: 67 TDDPLAAGIPSYVTQEEFSRYQGYWWQPKTTDGVYRILYEEIDESDVKIYNFPSS 121
D + A + ++ T +GY I + +DV + ++ S
Sbjct: 20 EDKLVKANLGAFPTTYVKLGPKGYMVYRPYLKDAANIYNMPLRPTDVFVASYQRS 74
>1aqu_A EST, estrogen sulfotransferase; PAP, sulfonation, 17-beta
estradiol, steroid-binding; HET: A3P EST; 1.60A {Mus
musculus} SCOP: c.37.1.5 PDB: 1aqy_A* 1bo6_A* 1hy3_A*
1g3m_A*
Length = 297
Score = 28.6 bits (64), Expect = 0.50
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 81 QEEFSRYQGYWWQPKTTDGVYRILYEEIDESDVKIYNFPSS 121
E F ++G + T + D+ I +P S
Sbjct: 11 YEVFGEFRGVLMDKRFTKYWEDVEMFLARPDDLVIATYPKS 51
>3ckl_A Sulfotransferase family cytosolic 1B member 1; SULT1B1, human
cytosolic sulfotransferase, resveratrol, SGC, cytoplasm,
lipid metabolism; HET: STL A3P; 2.00A {Homo sapiens}
PDB: 2z5f_A*
Length = 298
Score = 28.6 bits (64), Expect = 0.51
Identities = 7/44 (15%), Positives = 14/44 (31%)
Query: 76 PSYVTQEEFSRYQGYWWQPKTTDGVYRILYEEIDESDVKIYNFP 119
P + +++ GY +I D+ I +P
Sbjct: 6 PKDILRKDLKLVHGYPMTCAFASNWEKIEQFHSRPDDIVIATYP 49
>1ls6_A ARYL sulfotransferase; SULT 1A1, PAP, P-nitrophenol, positive
cooperativity, two substrate binding sites; HET: A3P
NPO; 1.90A {Homo sapiens} SCOP: c.37.1.5 PDB: 2d06_A*
3u3o_A* 3u3k_A* 3u3m_A* 3u3j_A* 3u3r_A* 1z28_A* 3qvv_A*
3qvu_A* 1z29_A* 1cjm_A 2a3r_A*
Length = 295
Score = 28.2 bits (63), Expect = 0.55
Identities = 5/36 (13%), Positives = 12/36 (33%)
Query: 86 RYQGYWWQPKTTDGVYRILYEEIDESDVKIYNFPSS 121
+G + + + + D+ I +P S
Sbjct: 14 YVKGVPLIKYFAEALGPLQSFQARPDDLLISTYPKS 49
>1q44_A RARO47, steroid sulfotransferase, AT2G03760/; APO, structu
genomics, protein structure initiative, center for
eukaryot structural genomics; 1.90A {Arabidopsis
thaliana} SCOP: c.37.1.5 PDB: 2q3m_A
Length = 326
Score = 27.5 bits (61), Expect = 1.1
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 82 EEFSRYQGYWWQPKTTDGVYRILYE-EIDESDVKIYNFPSS 121
E +QG W G+ E +SD+ + P S
Sbjct: 36 SEIYEFQGLWHTQAILQGILICQKRFEAKDSDIILVTNPKS 76
>1zd1_A Sulfotransferase 4A1; SGC, SULT4A1, structural genomics, structural
genomics conso transferase; 2.24A {Homo sapiens}
Length = 284
Score = 27.0 bits (60), Expect = 1.7
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 80 TQEEFSRYQGYWWQPKTTDGVYRILYEEIDESDVKIYNFPSS 121
+ ++ + G P + I + SDV I +P S
Sbjct: 15 FESKYFEFHGVRLPPFCRGKMEEIANFPVRPSDVWIVTYPKS 56
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 3.7
Identities = 3/18 (16%), Positives = 9/18 (50%), Gaps = 3/18 (16%)
Query: 106 EEID--ESDVKIYNFPSS 121
+ + ++ +K+Y S
Sbjct: 20 QALKKLQASLKLYA-DDS 36
>2zpt_X Tyrosine-ester sulfotransferase; SULT1D1, catecholamine,
sulfonation; HET: A3P GOL; 1.15A {Mus musculus} PDB:
2zvp_X* 2zvq_X* 2zyt_X* 2zyu_X* 2zyv_X* 2zyw_X*
Length = 295
Score = 25.5 bits (56), Expect = 6.2
Identities = 8/43 (18%), Positives = 15/43 (34%)
Query: 79 VTQEEFSRYQGYWWQPKTTDGVYRILYEEIDESDVKIYNFPSS 121
V + E +G + ++ E D+ I +P S
Sbjct: 7 VFRRELVDVEGIPLFWSIAEHWSQVESFEARPDDILISTYPKS 49
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI;
2.85A {Plasmodium falciparum}
Length = 375
Score = 25.3 bits (56), Expect = 7.0
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 97 TDGVYRILYEEIDESDV 113
+++I +E D S +
Sbjct: 345 FTVLHKISFENEDPSSL 361
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A
{Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Length = 335
Score = 25.2 bits (56), Expect = 7.1
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 97 TDGVYRILYEEIDESDV 113
D +YR+LYE + +V
Sbjct: 311 LDSIYRVLYEGLKVEEV 327
>2gwh_A Sulfotransferase 1C2; sulfate conjugation, pentachlorophenol, PA
pesticide, structural genomics, structural genomics
consort transferase; HET: A3P PCI; 1.80A {Homo sapiens}
PDB: 2ad1_A*
Length = 298
Score = 24.8 bits (54), Expect = 8.5
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 81 QEEFSRYQGYWWQPKTTDGVYRILYEEIDESDVKIYNFP 119
+ + +G T D +I + D+ I +P
Sbjct: 12 RLSVNYVKGILQPTDTCDIWDKIWNFQAKPDDLLISTYP 50
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976,
oxidoreductase, phospholipid biosynthesis; HET: EPE;
2.10A {Coxiella burnetii}
Length = 356
Score = 24.8 bits (55), Expect = 9.6
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 97 TDGVYRILYEEIDESDV 113
T V+RIL+E++D
Sbjct: 328 TFQVHRILHEDLDPQQA 344
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.425
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,972,227
Number of extensions: 105383
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 30
Length of query: 122
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,412,271
Effective search space: 176490840
Effective search space used: 176490840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)