BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3288
(97 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8C6B2|RTKN_MOUSE Rhotekin OS=Mus musculus GN=Rtkn PE=1 SV=3
Length = 564
Score = 84.0 bits (206), Expect = 3e-16, Method: Composition-based stats.
Identities = 36/71 (50%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Query: 3 QISGCKARVSLSDIRLPLMWRDSDYFKNKGDYRRFAVFCLVRSGTELYDTSLLCPVDRSH 62
Q S C+ RV +SD+R+PLMW+D++YFKNKGD R+AVF L++ G ++ DT ++ VDR+
Sbjct: 113 QHSPCRGRVCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLLQIGEQIQDTEMVL-VDRTL 171
Query: 63 TDLTFQDVLLL 73
TD++FQ+ +L
Sbjct: 172 TDISFQNNVLF 182
>sp|Q9BST9|RTKN_HUMAN Rhotekin OS=Homo sapiens GN=RTKN PE=1 SV=2
Length = 563
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/69 (50%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 5 SGCKARVSLSDIRLPLMWRDSDYFKNKGDYRRFAVFCLVRSGTELYDTSLLCPVDRSHTD 64
S C+ RV +SD+R+PLMW+D++YFKNKGD R+AVF L++ G + DT ++ VDR+ TD
Sbjct: 115 SPCRGRVCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLLQLGEHIQDTEMIL-VDRTLTD 173
Query: 65 LTFQDVLLL 73
++FQ +L
Sbjct: 174 ISFQSNVLF 182
>sp|Q6V7V2|RTKN_RAT Rhotekin OS=Rattus norvegicus GN=Rtkn PE=2 SV=1
Length = 548
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 5 SGCKARVSLSDIRLPLMWRDSDYFKNKGDYRRFAVFCLVRSGTELYDTSLLCPVDRSHTD 64
S C+ RV +SD+R+PLMW+D++YFKNKGD R+AVF L++ G ++ DT ++ VDR+ TD
Sbjct: 102 SPCRGRVCISDLRIPLMWKDTEYFKNKGDLHRWAVFLLLQLGEQIQDTEMVL-VDRTLTD 160
Query: 65 LTFQD 69
++FQ+
Sbjct: 161 ISFQN 165
>sp|Q14B46|RTKN2_MOUSE Rhotekin-2 OS=Mus musculus GN=Rtkn2 PE=2 SV=2
Length = 604
Score = 81.3 bits (199), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
Query: 7 CKARVSLSDIRLPLMWRDSDYFKNKGDYRRFAVFCLVRSGTELYDTSLLCPVDRSHTDLT 66
C+ +++LSDIR+PLMW+DSD+F NK +RFA+FCL R G +++DT ++ VD++ TD+
Sbjct: 94 CRGKIALSDIRIPLMWKDSDHFSNKECTQRFAIFCLFRMGAQVFDTDMVI-VDQTVTDIC 152
Query: 67 FQDVLLL 73
F++V +
Sbjct: 153 FENVTIF 159
>sp|Q8IZC4|RTKN2_HUMAN Rhotekin-2 OS=Homo sapiens GN=RTKN2 PE=2 SV=1
Length = 609
Score = 80.5 bits (197), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 5 SGCKARVSLSDIRLPLMWRDSDYFKNKGDYRRFAVFCLVRSGTELYDTSLLCPVDRSHTD 64
+ CK ++++SDIR+PLMW+DSD+F NK RR+A+FCL + G ++DT ++ VD++ TD
Sbjct: 96 TACKGKIAISDIRIPLMWKDSDHFSNKERSRRYAIFCLFKMGANVFDTDVV-NVDKTITD 154
Query: 65 LTFQDVLLL 73
+ F++V +
Sbjct: 155 ICFENVTIF 163
>sp|Q5XGX5|RTKN2_XENLA Rhotekin-2 OS=Xenopus laevis GN=rtkn2 PE=2 SV=1
Length = 612
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
Query: 6 GCKARVSLSDIRLPLMWRDSDYFKNKGDYRRFAVFCLVRSGTELYDTSLLCPVDRSHTDL 65
C +V++S IR+PLMW+DSD+F NK +R +VFC++R G E++DT ++ VD++ TD+
Sbjct: 96 ACPGKVAISGIRIPLMWKDSDHFSNKEKTQRHSVFCMLRLGPEIHDTDMVI-VDKTMTDI 154
Query: 66 TFQDV 70
F +V
Sbjct: 155 CFDNV 159
>sp|Q5XIZ9|RTKN2_DANRE Rhotekin-2 OS=Danio rerio GN=rtkn2 PE=2 SV=1
Length = 642
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 7 CKARVSLSDIRLPLMWRDSDYFKNKGDYRRFAVFCLVRSGTELYDTSLLCPVDRSHTDLT 66
CK +V++S +R+PL W+DS++F +KG+ +R AVFCL++ G+E++DT ++ D S TD+
Sbjct: 117 CKGKVAISGLRIPLFWKDSEHFNSKGNTQRVAVFCLMKIGSEIFDTEMVI-ADSSMTDIC 175
Query: 67 FQDV 70
F+ V
Sbjct: 176 FEGV 179
>sp|B6Q3C6|3DHQ_PENMQ Catabolic 3-dehydroquinase OS=Penicillium marneffei (strain ATCC
18224 / CBS 334.59 / QM 7333) GN=qutE PE=3 SV=1
Length = 175
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 10 RVSLSDIRLPLMWRDSDYFKNKGDYRRFAVFCLVRSGTELYDTSLLCPVDRSHTDLTFQD 69
V +S++ WR YF +K AV C+V GT Y+ ++ + DLTF+
Sbjct: 98 EVHISNVHAREQWRHHSYFSDK------AVACIVGLGTFGYEAAIQHATLKQFKDLTFR- 150
Query: 70 VLLLVVVVSAVDFGSGGWWFES 91
D+G +++ES
Sbjct: 151 -------YKRGDYGEVIYYYES 165
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.140 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,137,657
Number of Sequences: 539616
Number of extensions: 1151233
Number of successful extensions: 2666
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2656
Number of HSP's gapped (non-prelim): 8
length of query: 97
length of database: 191,569,459
effective HSP length: 66
effective length of query: 31
effective length of database: 155,954,803
effective search space: 4834598893
effective search space used: 4834598893
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)