Query psy3288
Match_columns 97
No_of_seqs 53 out of 55
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 21:10:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08174 Anillin: Cell divisio 99.9 2.4E-24 5.3E-29 149.6 6.6 79 6-85 1-85 (140)
2 KOG3640|consensus 96.3 0.0023 5E-08 59.4 2.2 71 10-85 813-884 (1116)
3 cd04016 C2_Tollip C2 domain pr 35.5 1.1E+02 0.0024 21.1 4.8 39 37-78 22-60 (121)
4 PF05618 Zn_protease: Putative 32.6 78 0.0017 22.8 3.7 30 32-62 79-108 (138)
5 PRK15368 pathogenicity island 23.7 43 0.00094 24.9 1.1 11 80-90 76-86 (127)
6 cd08682 C2_Rab11-FIP_classI C2 23.6 1.6E+02 0.0035 19.4 3.8 34 37-74 20-53 (126)
7 PF02649 GCHY-1: Type I GTP cy 21.5 71 0.0015 25.4 2.0 19 8-26 15-33 (276)
8 cd08379 C2D_MCTP_PRT_plant C2 19.7 3E+02 0.0064 19.1 4.6 46 37-86 24-69 (126)
9 cd08394 C2A_Munc13 C2 domain f 18.9 3.2E+02 0.0069 19.6 4.7 45 38-87 21-65 (127)
10 cd08378 C2B_MCTP_PRT_plant C2 17.5 1.8E+02 0.0038 19.5 3.0 36 38-77 18-53 (121)
No 1
>PF08174 Anillin: Cell division protein anillin; InterPro: IPR012966 This is a conserved domain in the anillin family of proteins, which are involved in cell division []. In Schizosaccharomyces pombe (Fission yeast, anillin (Mid2) is involved in septin ring organisation and cell separation [, ]. The domain is found adjacent to a 'pleckstrin homology' (PH) domain. The PH domain occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton (IPR001849 from INTERPRO).
Probab=99.90 E-value=2.4e-24 Score=149.60 Aligned_cols=79 Identities=43% Similarity=0.718 Sum_probs=70.7
Q ss_pred cceeeEEeccceeeeeeeccc---ccccCCcceeEEEEEEEeeC-CEEeecceeeeecCC--cceeeeCceEeeecCCCC
Q psy3288 6 GCKARVSLSDIRLPLMWRDSD---YFKNKGDYRRFAVFCLVRSG-TELYDTSLLCPVDRS--HTDLTFQDVLLLVVVVSA 79 (97)
Q Consensus 6 pCrgkv~iSdlRIPLmWkdse---~F~nkge~~r~AvFcllq~g-~eI~DT~lv~~VDrt--~TDI~F~d~~iF~~~~pD 79 (97)
||+|+|+|||||||||||+++ +|+|+++ ++|++||++|+| +++.+|.+++..|.+ .++|+|++.+.|++++||
T Consensus 1 p~~g~v~is~i~iPl~~k~~~~~~~f~~~~~-~~~~~~~l~k~~~~~~~~t~~~~~~dgs~~~~~i~f~~~~~~~~~~~d 79 (140)
T PF08174_consen 1 PCKGSVTISDIRIPLKWKFSDFSRLFKSKGK-RRFAFFCLLKYGPEEWDATFLVVARDGSFARTDICFPDTFEFSNVGPD 79 (140)
T ss_pred CCCccCcccCcccCcccccchhHHhhCCCCC-ceEEEEEEEecCCceEEEEeeEEccCcccccceEecCceeeecccCCC
Confidence 899999999999999999998 9988887 999999999999 778888776544423 899999999999999999
Q ss_pred eEEeec
Q psy3288 80 VDFGSG 85 (97)
Q Consensus 80 Fel~~~ 85 (97)
|++++.
T Consensus 80 F~v~ve 85 (140)
T PF08174_consen 80 FEVTVE 85 (140)
T ss_pred cEEEEE
Confidence 999864
No 2
>KOG3640|consensus
Probab=96.29 E-value=0.0023 Score=59.38 Aligned_cols=71 Identities=23% Similarity=0.299 Sum_probs=60.5
Q ss_pred eEEeccceeeeeeecccccccCCcc-eeEEEEEEEeeCCEEeecceeeeecCCcceeeeCceEeeecCCCCeEEeec
Q psy3288 10 RVSLSDIRLPLMWRDSDYFKNKGDY-RRFAVFCLVRSGTELYDTSLLCPVDRSHTDLTFQDVLLLVVVVSAVDFGSG 85 (97)
Q Consensus 10 kv~iSdlRIPLmWkdse~F~nkge~-~r~AvFcllq~g~eI~DT~lv~~VDrt~TDI~F~d~~iF~~~~pDFel~~~ 85 (97)
+..|+.||+||- .+|+.+|+. --|.+=|+++.+.++.-|-|+ .-+-.+.-|.|++++.|+|+++||++.+-
T Consensus 813 ~~sIt~I~l~l~----~~f~~~~~~an~~~L~cl~~~~e~vvvT~la-~t~~~ln~l~F~~~l~lsnvp~DF~ItmE 884 (1116)
T KOG3640|consen 813 QMSITNIRLYLN----ANFASRGSSANVVYLKCLLEYEETVVVTKLA-TTQTGLNVLEFPEHLMLSNVPVDFRITME 884 (1116)
T ss_pred ceeeeeehhhhh----hhhccccccchhhhhhhhhhhccceeEEeee-ccCCCceeEecccceEecCCCcceEEEEE
Confidence 456778999884 578878775 446677999999999999997 79999999999999999999999998753
No 3
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=35.47 E-value=1.1e+02 Score=21.06 Aligned_cols=39 Identities=13% Similarity=0.340 Sum_probs=29.4
Q ss_pred EEEEEEEeeCCEEeecceeeeecCCcceeeeCceEeeecCCC
Q psy3288 37 FAVFCLVRSGTELYDTSLLCPVDRSHTDLTFQDVLLLVVVVS 78 (97)
Q Consensus 37 ~AvFcllq~g~eI~DT~lv~~VDrt~TDI~F~d~~iF~~~~p 78 (97)
.--||.+++|.+.+-|+.+ .+...+..++..+.|.-+.+
T Consensus 22 sDPYv~i~lg~~~~kT~v~---~~~~~nP~WNe~F~f~v~~~ 60 (121)
T cd04016 22 MDPYCRIRVGHAVYETPTA---YNGAKNPRWNKTIQCTLPEG 60 (121)
T ss_pred CCceEEEEECCEEEEeEEc---cCCCCCCccCeEEEEEecCC
Confidence 3358889999999988763 45568899999999975433
No 4
>PF05618 Zn_protease: Putative ATP-dependant zinc protease; InterPro: IPR008503 This family consists of several hypothetical proteins from different archaeal and bacterial species.; PDB: 2PMA_B.
Probab=32.59 E-value=78 Score=22.79 Aligned_cols=30 Identities=23% Similarity=0.219 Sum_probs=22.7
Q ss_pred CcceeEEEEEEEeeCCEEeecceeeeecCCc
Q psy3288 32 GDYRRFAVFCLVRSGTELYDTSLLCPVDRSH 62 (97)
Q Consensus 32 ge~~r~AvFcllq~g~eI~DT~lv~~VDrt~ 62 (97)
...+||.|=.-+++|.+.+.+++ .+.||+-
T Consensus 79 ~~e~R~VV~~~~~lg~~~~~~e~-tL~dR~~ 108 (138)
T PF05618_consen 79 ESERRPVVETTLCLGGKTWKIEF-TLTDRSN 108 (138)
T ss_dssp ---CCEEEEEEEEETTEEEEEEE-EEE-S--
T ss_pred ceeEeeEEEEEEEECCEEEEEEE-EEcCCCc
Confidence 35799999999999999999999 4899973
No 5
>PRK15368 pathogenicity island chaperone protein SpiC; Provisional
Probab=23.66 E-value=43 Score=24.85 Aligned_cols=11 Identities=18% Similarity=0.782 Sum_probs=9.2
Q ss_pred eEEeeccEEee
Q psy3288 80 VDFGSGGWWFE 90 (97)
Q Consensus 80 Fel~~~~~~~~ 90 (97)
-||.+||||+-
T Consensus 76 lQL~~~~~WL~ 86 (127)
T PRK15368 76 IQLTADGGWLN 86 (127)
T ss_pred eEeccCcEEEE
Confidence 47899999984
No 6
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=23.65 E-value=1.6e+02 Score=19.38 Aligned_cols=34 Identities=18% Similarity=0.378 Sum_probs=26.0
Q ss_pred EEEEEEEeeCCEEeecceeeeecCCcceeeeCceEeee
Q psy3288 37 FAVFCLVRSGTELYDTSLLCPVDRSHTDLTFQDVLLLV 74 (97)
Q Consensus 37 ~AvFcllq~g~eI~DT~lv~~VDrt~TDI~F~d~~iF~ 74 (97)
.--||.+++|.+.+-|+. +.++ .+..|++.+.|.
T Consensus 20 ~dpYv~v~l~~~~~kT~v---~~~t-~nP~Wne~f~F~ 53 (126)
T cd08682 20 NDAYVIIQLGKEKYSTSV---KEKT-TSPVWKEECSFE 53 (126)
T ss_pred CCceEEEEECCeeeeeee---ecCC-CCCEeCceEEEE
Confidence 345677777888888886 3555 799999988884
No 7
>PF02649 GCHY-1: Type I GTP cyclohydrolase folE2; InterPro: IPR003801 This entry represents GTP cyclohydrolases belonging to family IV. In bacteria GTP cyclohydrolase FolE2 converts GTP to 7,8-dihydroneopterin triphosphate; while in the archaea GTP cyclohydrolase MptA converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate, the first intermediate in the biosynthesis of coenzyme methanopterin. ; PDB: 2R5R_A 3D1T_A 3D2O_B.
Probab=21.52 E-value=71 Score=25.41 Aligned_cols=19 Identities=37% Similarity=0.648 Sum_probs=16.1
Q ss_pred eeeEEeccceeeeeeeccc
Q psy3288 8 KARVSLSDIRLPLMWRDSD 26 (97)
Q Consensus 8 rgkv~iSdlRIPLmWkdse 26 (97)
--+|+|++||.|++-++.+
T Consensus 15 L~~VGi~~i~~PI~i~~~~ 33 (276)
T PF02649_consen 15 LDRVGIKGIRYPIRIKDKD 33 (276)
T ss_dssp ECEEEEEEEEEEEEEEETT
T ss_pred CCeeccCCceEeEEEeecC
Confidence 3589999999999988863
No 8
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=19.70 E-value=3e+02 Score=19.10 Aligned_cols=46 Identities=11% Similarity=0.228 Sum_probs=33.5
Q ss_pred EEEEEEEeeCCEEeecceeeeecCCcceeeeCceEeeecCCCCeEEeecc
Q psy3288 37 FAVFCLVRSGTELYDTSLLCPVDRSHTDLTFQDVLLLVVVVSAVDFGSGG 86 (97)
Q Consensus 37 ~AvFcllq~g~eI~DT~lv~~VDrt~TDI~F~d~~iF~~~~pDFel~~~~ 86 (97)
.-.||.+++|.+..-|+.+ .. -.+..+++.+.|.-..|.-.|.+.=
T Consensus 24 sDPYv~i~~g~~~~rTk~~---~~-~~nP~WnE~f~f~v~~~~~~l~v~V 69 (126)
T cd08379 24 TDAYCVAKYGPKWVRTRTV---ED-SSNPRWNEQYTWPVYDPCTVLTVGV 69 (126)
T ss_pred CCeeEEEEECCEEeEcCcc---cC-CCCCcceeEEEEEecCCCCEEEEEE
Confidence 4468888999999988875 33 3589999999997655554555543
No 9
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=18.86 E-value=3.2e+02 Score=19.57 Aligned_cols=45 Identities=7% Similarity=0.109 Sum_probs=32.5
Q ss_pred EEEEEEeeCCEEeecceeeeecCCcceeeeCceEeeecCCCCeEEeeccE
Q psy3288 38 AVFCLVRSGTELYDTSLLCPVDRSHTDLTFQDVLLLVVVVSAVDFGSGGW 87 (97)
Q Consensus 38 AvFcllq~g~eI~DT~lv~~VDrt~TDI~F~d~~iF~~~~pDFel~~~~~ 87 (97)
.-||.+|+|.+-.-|.. .+. .+..++..+.|.-..++-+|.+-=|
T Consensus 21 dPYV~Ik~g~~k~kT~v----~~~-~nP~WnE~F~F~~~~~~~~L~v~V~ 65 (127)
T cd08394 21 NTYVTLKVQNVKSTTIA----VRG-SQPCWEQDFMFEINRLDLGLVIELW 65 (127)
T ss_pred CCeEEEEECCEEeEeeE----CCC-CCCceeeEEEEEEcCCCCEEEEEEE
Confidence 35999999997555554 344 5999999999986666666655433
No 10
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=17.46 E-value=1.8e+02 Score=19.47 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=28.2
Q ss_pred EEEEEEeeCCEEeecceeeeecCCcceeeeCceEeeecCC
Q psy3288 38 AVFCLVRSGTELYDTSLLCPVDRSHTDLTFQDVLLLVVVV 77 (97)
Q Consensus 38 AvFcllq~g~eI~DT~lv~~VDrt~TDI~F~d~~iF~~~~ 77 (97)
-.||.+++|.+..-|+.+ .+| .+..|++.+.|.-..
T Consensus 18 Dpyv~v~l~~~~~kT~v~---~~t-~nP~Wne~F~f~~~~ 53 (121)
T cd08378 18 DPVVEVKLGNYKGSTKAI---ERT-SNPEWNQVFAFSKDR 53 (121)
T ss_pred CCEEEEEECCcccccccc---CCC-CCCccceEEEEEcCC
Confidence 457888888999888863 455 489999999998654
Done!