Query psy3288
Match_columns 97
No_of_seqs 53 out of 55
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 21:11:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3288.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3288hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bzv_A Fiber protein 2; recept 46.8 23 0.0008 26.3 4.1 58 19-77 17-80 (181)
2 1qhv_A Protein (adenovirus fib 41.7 33 0.0011 25.7 4.3 46 32-77 28-78 (195)
3 2qlk_A Fiber, PIV; fibre, CD46 39.3 97 0.0033 23.5 6.6 70 7-77 11-92 (213)
4 1knb_A Adenovirus type 5 fiber 38.8 40 0.0014 25.2 4.3 46 32-77 30-80 (196)
5 1kac_A Protein (fiber KNOB pro 38.5 38 0.0013 25.1 4.1 45 33-77 23-72 (185)
6 3cnc_A Fiber protein; adenovir 34.9 1.1E+02 0.0038 23.2 6.3 66 9-77 21-98 (220)
7 2wst_A Putative fiber protein; 33.4 56 0.0019 24.7 4.4 59 19-77 36-100 (208)
8 1uxa_A Fiber protein; viral pr 33.3 64 0.0022 24.0 4.7 45 33-77 30-83 (194)
9 2r5r_A UPF0343 protein NE1163; 29.4 47 0.0016 25.6 3.5 17 9-25 27-43 (271)
10 1qiu_A Adenovirus fibre; fibre 25.0 57 0.0019 25.4 3.2 57 21-77 83-147 (264)
11 1h7z_A Adenovirus fibre protei 23.2 54 0.0019 24.4 2.7 45 33-77 26-76 (194)
12 2bnk_A Early protein GP16.7; D 20.6 21 0.00071 22.9 -0.0 8 14-21 19-26 (67)
No 1
>2bzv_A Fiber protein 2; receptor, viral protein; 1.15A {Human adenovirus type 41} PDB: 2bzu_A
Probab=46.75 E-value=23 Score=26.33 Aligned_cols=58 Identities=12% Similarity=0.147 Sum_probs=41.5
Q ss_pred eeeeeccccccc---CCcceeEEEEEEEeeCCEEeecceeeeecCCccee---eeCceEeeecCC
Q psy3288 19 PLMWRDSDYFKN---KGDYRRFAVFCLVRSGTELYDTSLLCPVDRSHTDL---TFQDVLLLVVVV 77 (97)
Q Consensus 19 PLmWkdse~F~n---kge~~r~AvFcllq~g~eI~DT~lv~~VDrt~TDI---~F~d~~iF~~~~ 77 (97)
.=.|-- +.--| .++..-=-.-||-|||+.|.-|=.+..|.-+++-| .|.=.+.|++.|
T Consensus 17 ~TLWTt-dPsPNC~i~~~~DsKLtL~LTKcGs~VlGtVsL~~vkg~l~~i~~~s~~i~L~FD~~G 80 (181)
T 2bzv_A 17 TTIWSI-SPTPNCSIYETQDANLFLCLTKNGAHVLGTITIKGLKGALREMHDNALSLKLPFDNQG 80 (181)
T ss_dssp CEEECC-CSSCCBCSSSTTCEEEEEEEEEETTEEEEEEEEEECSGGGGSCSSSEEEEEEEECTTS
T ss_pred CceEcC-CCCCCEEEEeCCCcEEEEEEEecCCEEEEEEEEEEeccceeecCCceEEEEEEECCCC
Confidence 345655 44433 23444455789999999999998887787677666 777788888876
No 2
>1qhv_A Protein (adenovirus fibre); receptor binding, extra-ordinary stability, viral protein; 1.51A {Human adenovirus 2} SCOP: b.21.1.1
Probab=41.70 E-value=33 Score=25.66 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=36.5
Q ss_pred CcceeEEEEEEEeeCCEEeecceeeeecCCccee-----eeCceEeeecCC
Q psy3288 32 GDYRRFAVFCLVRSGTELYDTSLLCPVDRSHTDL-----TFQDVLLLVVVV 77 (97)
Q Consensus 32 ge~~r~AvFcllq~g~eI~DT~lv~~VDrt~TDI-----~F~d~~iF~~~~ 77 (97)
++..-=-.-||-|||+.|+-|=.+..|.-+++-| .|.=.+.|++-|
T Consensus 28 ~~~D~KLtL~LTKcGs~Vlgtvsl~~v~G~l~~i~~~~~~~~i~L~FD~~G 78 (195)
T 1qhv_A 28 SDNDCKFTLVLTKCGSQVLATVAALAVSGDLSSMTGTVASVSIFLRFDQNG 78 (195)
T ss_dssp STTCEEEEEEEEEETTEEEEEEEEEECSCCTGGGCSSSSEEEEEEEECTTS
T ss_pred cCCCcEEEEEEEeeCCEEEEEEEEEEeccceEeccCCceeEEEEEEECCCC
Confidence 4555556789999999999998887777666665 688888998877
No 3
>2qlk_A Fiber, PIV; fibre, CD46-bindning, viral protein; 2.02A {Human adenovirus 35} PDB: 3bq4_A 3l88_A 3l89_A*
Probab=39.27 E-value=97 Score=23.49 Aligned_cols=70 Identities=14% Similarity=0.128 Sum_probs=44.4
Q ss_pred ceeeEEeccceeeeeeeccccccc------CCcceeEEEEEEEeeCCEEeecceeeeecCCccee------eeCceEeee
Q psy3288 7 CKARVSLSDIRLPLMWRDSDYFKN------KGDYRRFAVFCLVRSGTELYDTSLLCPVDRSHTDL------TFQDVLLLV 74 (97)
Q Consensus 7 Crgkv~iSdlRIPLmWkdse~F~n------kge~~r~AvFcllq~g~eI~DT~lv~~VDrt~TDI------~F~d~~iF~ 74 (97)
..|.+||+|=+ .=+|--.+.--| +.+..-=-.-||-|||+.|.-|=.+..|.-+++-| .|.=.+.|+
T Consensus 11 ~~~~~~~~~~~-~TLWTtpdPspNC~i~~~~~~~D~KLtL~LTKcGs~VlgtvSl~gv~g~l~~i~~~~~~~~~i~L~FD 89 (213)
T 2qlk_A 11 GSGDICIKDSI-NTLWTGINPPPNCQIVENTNTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKTANIQLRLYFD 89 (213)
T ss_dssp ---------CC-CEEESCSSCCSCBCCSSSCSSCCEEEEEEEEEETTEEEEEEEEEECSTTGGGGGGSSEEEEEEEEEEC
T ss_pred CCCcccccCCC-ceecCCCCCCCCEEEeccCCCCccEEEEEEEeeCCEEEEEEEEEEeccceEEeccCCcceEEEEEEEC
Confidence 35778888765 567877666543 12445556789999999999998887776555554 688888898
Q ss_pred cCC
Q psy3288 75 VVV 77 (97)
Q Consensus 75 ~~~ 77 (97)
+-|
T Consensus 90 ~~G 92 (213)
T 2qlk_A 90 SSG 92 (213)
T ss_dssp TTS
T ss_pred CCC
Confidence 876
No 4
>1knb_A Adenovirus type 5 fiber protein; cell receptor recognition; 1.70A {Human adenovirus 5} SCOP: b.21.1.1
Probab=38.81 E-value=40 Score=25.15 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=35.9
Q ss_pred CcceeEEEEEEEeeCCEEeecceeeeecCCccee-----eeCceEeeecCC
Q psy3288 32 GDYRRFAVFCLVRSGTELYDTSLLCPVDRSHTDL-----TFQDVLLLVVVV 77 (97)
Q Consensus 32 ge~~r~AvFcllq~g~eI~DT~lv~~VDrt~TDI-----~F~d~~iF~~~~ 77 (97)
++..-=-.-||-|||+.|+-|=.+..|.-+++-| .|.=.+.|++-|
T Consensus 30 ~~~D~KLtL~LTKcGs~Vlgtvsl~~v~G~l~~i~~~~~~~~i~L~FD~~G 80 (196)
T 1knb_A 30 AEKDAKLTLVLTKCGSQILATVSVLAVKGSLAPISGTVQSAHLIIRFDENG 80 (196)
T ss_dssp STTCEEEEEEEEEETTEEEEEEEEEECSTTBTTBCTTCSEEEEEEEECTTS
T ss_pred cCCCcEEEEEEEeeCCEEEEEEEEEEeccceEeccCCCceEEEEEEECCCC
Confidence 4445556789999999999998887777666665 577788898877
No 5
>1kac_A Protein (fiber KNOB protein); adhesion protein receptor complex, viral protein/receptor complex; 2.60A {Human adenovirus 12} SCOP: b.21.1.1 PDB: 1nob_A 1p6a_A 1p69_A
Probab=38.48 E-value=38 Score=25.07 Aligned_cols=45 Identities=16% Similarity=0.176 Sum_probs=34.8
Q ss_pred cceeEEEEEEEeeCCEEeecceeeeecCCccee-----eeCceEeeecCC
Q psy3288 33 DYRRFAVFCLVRSGTELYDTSLLCPVDRSHTDL-----TFQDVLLLVVVV 77 (97)
Q Consensus 33 e~~r~AvFcllq~g~eI~DT~lv~~VDrt~TDI-----~F~d~~iF~~~~ 77 (97)
+..-=-.-||-|+|+.|+-|=.+..|.-+++-| .|.=.+.|++-|
T Consensus 23 ~~D~KLtL~LTK~Gs~Vlgtvsl~~v~G~l~~i~~~~~~~~i~L~FD~~G 72 (185)
T 1kac_A 23 ELDAKLTLCLTKNGSIVNGIVSLVGVKGNLLNIQSTTTTVGVHLVFDEQG 72 (185)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEEEECSGGGGSCCTTCCEEEEEEEECTTS
T ss_pred CCCcEEEEEEEeeCCEEEEEEEEEEeccceEeccCCcceEEEEEEECCCC
Confidence 444455679999999999998887777666655 677788898876
No 6
>3cnc_A Fiber protein; adenovirus fiber KNOB, viral protein; 2.40A {Human adenovirus 16}
Probab=34.89 E-value=1.1e+02 Score=23.19 Aligned_cols=66 Identities=15% Similarity=0.144 Sum_probs=44.6
Q ss_pred eeEEeccceeeeeeeccccccc---CC---cceeEEEEEEEeeCCEEeecceeeeecCCccee------eeCceEeeecC
Q psy3288 9 ARVSLSDIRLPLMWRDSDYFKN---KG---DYRRFAVFCLVRSGTELYDTSLLCPVDRSHTDL------TFQDVLLLVVV 76 (97)
Q Consensus 9 gkv~iSdlRIPLmWkdse~F~n---kg---e~~r~AvFcllq~g~eI~DT~lv~~VDrt~TDI------~F~d~~iF~~~ 76 (97)
|.|+++| .=.|--.+.=-| .. +..-=-.-||-|||+.|+-|=.+..|.-+++-| .|.=.+.|++.
T Consensus 21 ~~ia~~~---~TLWTtpdPspNc~i~~~~~~~DsKLtL~LTKcGs~VlgtvSl~~v~G~~~~i~~~~~~~~~i~L~FD~~ 97 (220)
T 3cnc_A 21 NAITIEN---NTLWTGAKPSANCVIKEGEDSPDCKLTLVLVKNGGLINGYITLMGASEYTNTLFKNNQVTIDVNLAFDNT 97 (220)
T ss_dssp ----CEE---EEEESCSSCCSCBCCSTTCCSCCEEEEEEEEEETTEEEEEEEEEECSTTTTTGGGSSEEEEEEEEEECTT
T ss_pred CCEEccC---cccccCCCCCCCEEEecccCCCCceEEEEEEeeCCEEEEEEEEEEeccceEEeccCCcceEEEEEEECCC
Confidence 5677766 567766665543 22 445556789999999999998887776445444 68888899887
Q ss_pred C
Q psy3288 77 V 77 (97)
Q Consensus 77 ~ 77 (97)
|
T Consensus 98 G 98 (220)
T 3cnc_A 98 G 98 (220)
T ss_dssp S
T ss_pred C
Confidence 7
No 7
>2wst_A Putative fiber protein; viral protein; 3.20A {Porcine adenovirus 4}
Probab=33.45 E-value=56 Score=24.70 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=41.6
Q ss_pred eeeeeccccccc---C--CcceeEEEEEEEeeCCEEeecceeeeecCCc-ceeeeCceEeeecCC
Q psy3288 19 PLMWRDSDYFKN---K--GDYRRFAVFCLVRSGTELYDTSLLCPVDRSH-TDLTFQDVLLLVVVV 77 (97)
Q Consensus 19 PLmWkdse~F~n---k--ge~~r~AvFcllq~g~eI~DT~lv~~VDrt~-TDI~F~d~~iF~~~~ 77 (97)
.=.|--.+.--| . .+..-=-.-||-|||+.|.-|=.+..|.-+. |...|.=.+.|++.|
T Consensus 36 ~TLWTtpdPspNc~i~~~~~~DsKLtL~LTKcGs~VlgtvSl~~v~~~~it~~~~~i~L~FD~~G 100 (208)
T 2wst_A 36 PTLWTGPAPEANVTFSGENSPSGILRLCLSRTGGTVIGTLSVQGSLTNPSTGQTLGMNLYFDADG 100 (208)
T ss_dssp CCEESCSSCCSCBCCTTCSSCCEEEEEEEEEETTEEEEEEEEEEECSSCCSSSEEEEEEEECTTS
T ss_pred eeecCCCCcCCCEEEecCCCCCcEEEEEEEeeCCEEEEEEEEEEEeeeecccceEEEEEEECCCC
Confidence 456766555433 2 4445556789999999999998876666322 566788888998877
No 8
>1uxa_A Fiber protein; viral protein, fibre, receptor, sialic acid, neuraminic acid, CD46, DAF, conjunctivitis; HET: SIA GAL; 1.5A {Human adenovirus type 37} SCOP: b.21.1.1 PDB: 1uxe_A 2j12_A 2wbw_A* 2wgt_A* 2wgu_A* 3n0i_A* 3qnd_A* 1uxb_A*
Probab=33.31 E-value=64 Score=23.98 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=34.4
Q ss_pred cceeEEEEEEEeeCCEEeecceeeeecCCccee---------eeCceEeeecCC
Q psy3288 33 DYRRFAVFCLVRSGTELYDTSLLCPVDRSHTDL---------TFQDVLLLVVVV 77 (97)
Q Consensus 33 e~~r~AvFcllq~g~eI~DT~lv~~VDrt~TDI---------~F~d~~iF~~~~ 77 (97)
+..-=-.-||-|||+.|+-|=.+..|.-+++-| .|.=.+.|++.|
T Consensus 30 ~~DsKLtL~LTKcGs~Vlgtvsl~~v~g~l~~i~~~~~~~~~~~~i~L~FD~~G 83 (194)
T 1uxa_A 30 DKDSKLTLVLTKCGSQILANVSLIVVAGKYHIINNKTNPKIKSFTIKLLFNKNG 83 (194)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEEEECSSTTTEEETTTCTTCCEEEEEEEECTTS
T ss_pred CCCcEEEEEEEeeCCEEEEEEEEEEeccceEecccccccccceEEEEEEECCCC
Confidence 444455679999999999998887777666654 566688898877
No 9
>2r5r_A UPF0343 protein NE1163; APC86493, DUF198, structural genomics, PSI-2, protein structure initiative; 3.05A {Nitrosomonas europaea atcc 19718}
Probab=29.42 E-value=47 Score=25.59 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=14.5
Q ss_pred eeEEeccceeeeeeecc
Q psy3288 9 ARVSLSDIRLPLMWRDS 25 (97)
Q Consensus 9 gkv~iSdlRIPLmWkds 25 (97)
-+|+|++||.|+.=++.
T Consensus 27 ~~VGi~~i~~Pi~v~~~ 43 (271)
T 2r5r_A 27 DRVGIKAIRHPVVVADK 43 (271)
T ss_dssp SEEEEEEEEEEEEECCT
T ss_pred ceecCCCceEeEEEEcC
Confidence 47999999999997663
No 10
>1qiu_A Adenovirus fibre; fibre protein, triple beta-spiral; 2.4A {Human adenovirus 2} SCOP: b.21.1.1 b.83.1.1
Probab=25.04 E-value=57 Score=25.43 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=40.3
Q ss_pred eeeccccccc---CCcceeEEEEEEEeeCCEEeecceeeeecCCccee-----eeCceEeeecCC
Q psy3288 21 MWRDSDYFKN---KGDYRRFAVFCLVRSGTELYDTSLLCPVDRSHTDL-----TFQDVLLLVVVV 77 (97)
Q Consensus 21 mWkdse~F~n---kge~~r~AvFcllq~g~eI~DT~lv~~VDrt~TDI-----~F~d~~iF~~~~ 77 (97)
.|--.+.--| .++..-=-.-||-|||+.|+-|=.+..|.-+++-| .|.=.+.|++.|
T Consensus 83 LWTtpdPspNc~i~~~~DsKLtL~LTKcGs~Vlgtvsl~~v~g~~~~i~~~~~~~~i~L~FD~~G 147 (264)
T 1qiu_A 83 LWTTPDPSPNCRIHSDNDCKFTLVLTKCGSQVLATVAALAVSGDLSSMTGTVASVSIFLRFDQNG 147 (264)
T ss_dssp EESCSSCCSCBCSSSTTCEEEEEEEEEETTEEEEEEEEEEEEEESHHHHTTCCEEEEEEEECTTS
T ss_pred ecCCCCCCCCEEEecCCCcEEEEEEEeeCCEEEEEEEEEEecccceeccCCceeEEEEEEECCCC
Confidence 4544444333 34555566789999999999998887777455444 788888898877
No 11
>1h7z_A Adenovirus fibre protein; cell receptor recognition, receptor; 1.6A {Human adenovirus type 3} SCOP: b.21.1.1
Probab=23.22 E-value=54 Score=24.44 Aligned_cols=45 Identities=11% Similarity=0.029 Sum_probs=32.9
Q ss_pred cceeEEEEEEEeeCCEEeecceeeeecCCcce------eeeCceEeeecCC
Q psy3288 33 DYRRFAVFCLVRSGTELYDTSLLCPVDRSHTD------LTFQDVLLLVVVV 77 (97)
Q Consensus 33 e~~r~AvFcllq~g~eI~DT~lv~~VDrt~TD------I~F~d~~iF~~~~ 77 (97)
+..-=-.-||-|+|+.|+-|=.+..|.-+++- ..|.=.+.|++.|
T Consensus 26 ~~DsKLtL~LTK~Gs~Vlgtvsl~~v~g~~~~i~~~~~~~~~i~L~FD~~G 76 (194)
T 1h7z_A 26 NPDSKLTLILVKNGGIVNGYVTLMGASDYVNTLFKNKNVSINVELYFDATG 76 (194)
T ss_dssp SCCEEEEEEEEEETTEEEEEEEEEECSHHHHTGGGSSEEEEEEEEEECTTS
T ss_pred CCCceEEEEEEeeCCEEEEEEEEEEeccceEEeccCCcceEEEEEEECCCC
Confidence 33445577999999999999887666523333 4688888898876
No 12
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=20.57 E-value=21 Score=22.92 Aligned_cols=8 Identities=50% Similarity=0.767 Sum_probs=6.5
Q ss_pred ccceeeee
Q psy3288 14 SDIRLPLM 21 (97)
Q Consensus 14 SdlRIPLm 21 (97)
|+||||+-
T Consensus 19 SnIrIP~D 26 (67)
T 2bnk_A 19 SNIRIPSD 26 (67)
T ss_dssp TTCCCCHH
T ss_pred cCCcCcHH
Confidence 78999963
Done!