Query psy3288
Match_columns 97
No_of_seqs 53 out of 55
Neff 3.3
Searched_HMMs 13730
Date Fri Aug 16 21:11:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3288.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3288hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ep6a1 b.7.1.1 (A:92-217) Mul 39.5 32 0.0023 20.1 5.0 45 39-87 29-73 (126)
2 d1wfja_ b.7.1.2 (A:) C2 domain 38.9 17 0.0013 21.6 3.7 44 39-85 33-76 (136)
3 d1qhva_ b.21.1.1 (A:) Adenovir 33.7 24 0.0017 24.6 4.2 59 33-91 29-95 (195)
4 d1jdfa2 d.54.1.1 (A:5-137) D-g 29.1 17 0.0012 22.0 2.4 33 13-45 6-39 (133)
5 d1knba_ b.21.1.1 (A:) Adenovir 29.0 34 0.0025 23.6 4.3 41 37-77 25-70 (186)
6 d2j12a1 b.21.1.1 (A:184-365) A 27.8 40 0.0029 23.1 4.5 41 38-78 23-72 (182)
7 d1kaca_ b.21.1.1 (A:) Adenovir 27.2 35 0.0026 23.5 4.1 43 35-77 25-72 (185)
8 d2cjta1 b.7.1.1 (A:1-128) Unc- 23.4 75 0.0055 19.2 5.1 43 37-84 20-62 (128)
9 d2c5ra1 a.251.1.1 (A:66-129) E 21.9 8.8 0.00064 23.0 -0.0 15 14-28 16-30 (64)
10 d1fzda_ d.171.1.1 (A:) Fibrino 20.2 9 0.00065 26.1 -0.3 19 35-54 66-84 (197)
No 1
>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.51 E-value=32 Score=20.11 Aligned_cols=45 Identities=13% Similarity=0.224 Sum_probs=33.2
Q ss_pred EEEEEeeCCEEeecceeeeecCCcceeeeCceEeeecCCCCeEEeeccE
Q psy3288 39 VFCLVRSGTELYDTSLLCPVDRSHTDLTFQDVLLLVVVVSAVDFGSGGW 87 (97)
Q Consensus 39 vFcllq~g~eI~DT~lv~~VDrt~TDI~F~d~~iF~~~~pDFel~~~~~ 87 (97)
-||.+++|.+.+-|+.+ .+| ....|+..+.|+-..|.=.|++-=|
T Consensus 29 pyv~v~~~~~~~~T~~~---~~t-~nP~wne~f~f~v~~~~~~L~i~V~ 73 (126)
T d2ep6a1 29 PFCLLELGNDRLQTHTV---YKN-LNPEWNKVFTFPIKDIHDVLEVTVF 73 (126)
T ss_dssp EEEEEEETTEEEECCCC---SSC-SSCCCCEEEEEEESCTTCEEEEEEE
T ss_pred eEEEEEcCCeEEEEEee---CCc-eeEEEEEEEEEEEeccCceeEEEEE
Confidence 57889999999999874 344 6788999999986655545555433
No 2
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=38.93 E-value=17 Score=21.61 Aligned_cols=44 Identities=7% Similarity=0.171 Sum_probs=31.9
Q ss_pred EEEEEeeCCEEeecceeeeecCCcceeeeCceEeeecCCCCeEEeec
Q psy3288 39 VFCLVRSGTELYDTSLLCPVDRSHTDLTFQDVLLLVVVVSAVDFGSG 85 (97)
Q Consensus 39 vFcllq~g~eI~DT~lv~~VDrt~TDI~F~d~~iF~~~~pDFel~~~ 85 (97)
.||.++++.+.+-|+.+ -+.-++..|++.+.|.-..+.-+|.+-
T Consensus 33 pyv~v~~~~~~~~t~~~---~~~~~nP~Wne~f~f~v~~~~~~L~v~ 76 (136)
T d1wfja_ 33 PYVQLTCRTQDQKSNVA---EGMGTTPEWNETFIFTVSEGTTELKAK 76 (136)
T ss_dssp CCEEEESSSCEEECCCC---TTCCSSCEEEEEEEEEEESSCCEEEEE
T ss_pred ccEEEEEeeeeEEEEEE---ecCCCcEEEeeEEEEEEcCccceEEEE
Confidence 47888899998888864 234568999999998755556556543
No 3
>d1qhva_ b.21.1.1 (A:) Adenovirus fiber protein "knob" domain {Human adenovirus type 2 [TaxId: 10515]}
Probab=33.70 E-value=24 Score=24.58 Aligned_cols=59 Identities=15% Similarity=0.110 Sum_probs=39.5
Q ss_pred cceeEEEEEEEeeCCEEeecceeeeecCCc-----ceeeeCceEeeecCC---CCeEEeeccEEeee
Q psy3288 33 DYRRFAVFCLVRSGTELYDTSLLCPVDRSH-----TDLTFQDVLLLVVVV---SAVDFGSGGWWFES 91 (97)
Q Consensus 33 e~~r~AvFcllq~g~eI~DT~lv~~VDrt~-----TDI~F~d~~iF~~~~---pDFel~~~~~~~~~ 91 (97)
+..-=-.-||-|+|+.|+-|=.+..|.-++ |-..|.=.+.|++.| ++=.+..+-|=|.+
T Consensus 29 ~~D~KLtL~LTK~G~~Vlg~vsl~~v~g~~~~i~~t~~s~~v~L~FD~~G~Ll~~s~l~k~~W~~R~ 95 (195)
T d1qhva_ 29 DNDCKFTLVLTKCGSQVLATVAALAVSGDLSSMTGTVASVSIFLRFDQNGVLMENSSLKKHYWNFRN 95 (195)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEEEECSCCTGGGCSSSSEEEEEEEECTTSCBCSSSSBCSTTCEEEE
T ss_pred CCCceEEEEEEecCCEEEEEEEEEEecCceeecCCCceEEEEEEEECCCCCCCcCCccccccccccc
Confidence 333346779999999999998877676555 445677788898887 22334444444443
No 4
>d1jdfa2 d.54.1.1 (A:5-137) D-glucarate dehydratase {Escherichia coli [TaxId: 562]}
Probab=29.14 E-value=17 Score=21.97 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=25.5
Q ss_pred eccce-eeeeeecccccccCCcceeEEEEEEEee
Q psy3288 13 LSDIR-LPLMWRDSDYFKNKGDYRRFAVFCLVRS 45 (97)
Q Consensus 13 iSdlR-IPLmWkdse~F~nkge~~r~AvFcllq~ 45 (97)
|+++| +|+-=+++..++-.|-.+.++--+++++
T Consensus 6 It~i~~~~v~~~~~~~~~~~~~~~~~~~~~iV~l 39 (133)
T d1jdfa2 6 VTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVII 39 (133)
T ss_dssp EEEEEEEEEEEECCCBEETTEECCSEEEEEEEEE
T ss_pred EEEEEEEEecccCcccccCCCCcCCccceEEEEE
Confidence 66777 8888888888887777777777777773
No 5
>d1knba_ b.21.1.1 (A:) Adenovirus fiber protein "knob" domain {Human adenovirus type 5 [TaxId: 28285]}
Probab=29.03 E-value=34 Score=23.55 Aligned_cols=41 Identities=12% Similarity=0.065 Sum_probs=30.6
Q ss_pred EEEEEEEeeCCEEeecceeeeecCCcc-----eeeeCceEeeecCC
Q psy3288 37 FAVFCLVRSGTELYDTSLLCPVDRSHT-----DLTFQDVLLLVVVV 77 (97)
Q Consensus 37 ~AvFcllq~g~eI~DT~lv~~VDrt~T-----DI~F~d~~iF~~~~ 77 (97)
=-.-||-|||+.|+-|=.+..|.-+++ .-.|.=.+.|++.|
T Consensus 25 KLtL~LTK~Gs~Vlg~vsl~~v~g~~~~i~~t~~~~~i~l~FD~~G 70 (186)
T d1knba_ 25 KLTLVLTKCGSQILATVSVLAVKGSLAPISGTVQSAHLIIRFDENG 70 (186)
T ss_dssp EEEEEEEEETTEEEEEEEEEECSTTBTTBCTTCSEEEEEEEECTTS
T ss_pred eEEEEEEccCCEEEEEEEEEEeccceEeccCCceeEEEEEEECCCC
Confidence 366799999999999988766665553 33555567788877
No 6
>d2j12a1 b.21.1.1 (A:184-365) Adenovirus fiber protein "knob" domain {Human adenovirus type 37 [TaxId: 52275]}
Probab=27.76 E-value=40 Score=23.06 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=31.3
Q ss_pred EEEEEEeeCCEEeecceeeeecCC---------cceeeeCceEeeecCCC
Q psy3288 38 AVFCLVRSGTELYDTSLLCPVDRS---------HTDLTFQDVLLLVVVVS 78 (97)
Q Consensus 38 AvFcllq~g~eI~DT~lv~~VDrt---------~TDI~F~d~~iF~~~~p 78 (97)
-.-||-|||+.|+-|=.+..|.-+ .+...|.=.+.|++.|.
T Consensus 23 L~L~LTK~G~~Vlgtvsl~~vkG~~~~i~~~t~~t~~s~~v~L~FD~~G~ 72 (182)
T d2j12a1 23 LTLVLTKCGSQILANVSLIVVAGKYHIINNKTNPKIKSFTIKLLFNKNGV 72 (182)
T ss_dssp EEEEEEEETTEEEEEEEEEECSSTTSEEETTTCTTCCEEEEEEEECTTSC
T ss_pred EEEEEEeeCCEEEEEEEEEEecCcceeecccCCCcceEEEEEEEECCCCC
Confidence 567999999999999887655422 24467777888988875
No 7
>d1kaca_ b.21.1.1 (A:) Adenovirus fiber protein "knob" domain {Human adenovirus type 12 [TaxId: 28282]}
Probab=27.20 E-value=35 Score=23.48 Aligned_cols=43 Identities=19% Similarity=0.144 Sum_probs=32.2
Q ss_pred eeEEEEEEEeeCCEEeecceeeeecCCc-----ceeeeCceEeeecCC
Q psy3288 35 RRFAVFCLVRSGTELYDTSLLCPVDRSH-----TDLTFQDVLLLVVVV 77 (97)
Q Consensus 35 ~r~AvFcllq~g~eI~DT~lv~~VDrt~-----TDI~F~d~~iF~~~~ 77 (97)
.-=-.-||-|||+.|+-|=.+..|.-++ |...|.=.+.|++.|
T Consensus 25 D~KLtL~LTK~Gs~Vlgtvsl~~v~g~~~~i~~t~~s~~i~L~FD~~G 72 (185)
T d1kaca_ 25 DAKLTLCLTKNGSIVNGIVSLVGVKGNLLNIQSTTTTVGVHLVFDEQG 72 (185)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEECSGGGGSCCTTCCEEEEEEEECTTS
T ss_pred CceEEEEEEeeCCEEEEEEEEEEeccceEEecCCceEEEEEEEECCCC
Confidence 3346779999999999998876665333 345777788898877
No 8
>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=23.41 E-value=75 Score=19.22 Aligned_cols=43 Identities=7% Similarity=0.160 Sum_probs=32.7
Q ss_pred EEEEEEEeeCCEEeecceeeeecCCcceeeeCceEeeecCCCCeEEee
Q psy3288 37 FAVFCLVRSGTELYDTSLLCPVDRSHTDLTFQDVLLLVVVVSAVDFGS 84 (97)
Q Consensus 37 ~AvFcllq~g~eI~DT~lv~~VDrt~TDI~F~d~~iF~~~~pDFel~~ 84 (97)
+--||.+++|..-..|..+ ++. +..|+..+.|.-..|+=.|.+
T Consensus 20 ~dpYv~l~~~~~k~~T~~~----k~~-nP~Wne~f~f~v~~~~~~L~v 62 (128)
T d2cjta1 20 FNTYVTLKVQNVKSTTIAV----RGS-QPSWEQDFMFEINRLDLGLTV 62 (128)
T ss_dssp CEEEEEEEETTEEEECCCE----ESS-SCEEEEEEEEEECCCSSEEEE
T ss_pred cCeEEEEEeCCEEEEEEEe----cCC-CCeEEEEEEEeeccccceEEE
Confidence 4579999999998888763 454 899999999987777544443
No 9
>d2c5ra1 a.251.1.1 (A:66-129) Early protein gp16.7 {Bacteriophage phi-29 [TaxId: 10756]}
Probab=21.92 E-value=8.8 Score=22.95 Aligned_cols=15 Identities=27% Similarity=0.206 Sum_probs=9.5
Q ss_pred ccceeeeeeeccccc
Q psy3288 14 SDIRLPLMWRDSDYF 28 (97)
Q Consensus 14 SdlRIPLmWkdse~F 28 (97)
|+||||+-==..-+|
T Consensus 16 SnIrIP~DIIEdl~~ 30 (64)
T d2c5ra1 16 SNIRIPSDIIEDLVN 30 (64)
T ss_dssp TTCCCCHHHHHHHHT
T ss_pred cCCcCcHHHHHHHHH
Confidence 789999753333344
No 10
>d1fzda_ d.171.1.1 (A:) Fibrinogen C-terminal domains {Human (Homo sapiens), fibrinogen-420, alpha-E [TaxId: 9606]}
Probab=20.24 E-value=9 Score=26.13 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=11.3
Q ss_pred eeEEEEEEEeeCCEEeecce
Q psy3288 35 RRFAVFCLVRSGTELYDTSL 54 (97)
Q Consensus 35 ~r~AvFcllq~g~eI~DT~l 54 (97)
.+||-+ -+++|.|-..=+|
T Consensus 66 ~~~a~y-~F~v~~e~~~Y~l 84 (197)
T d1fzda_ 66 EAYAEY-HFRVGSEAEGYAL 84 (197)
T ss_dssp EEEEEE-EEEECCTTTTTCE
T ss_pred EEEEEE-eEEecCHHHhhhh
Confidence 466666 4777776544444
Done!