RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3288
         (97 letters)



>gnl|CDD|219738 pfam08174, Anillin, Cell division protein anillin.  Anillin is a
          protein involved in septin organisation during cell
          division. It is an actin binding protein that is
          localised to the cleavage furrow, and it maintains the
          localisation of active myosin, which ensures the
          spatial control of concerted contraction during
          cytokinesis.
          Length = 129

 Score = 52.0 bits (125), Expect = 5e-10
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 7  CKARVSLSDIRLPLMWRDSDYFKN-KGDYRRFAVFCLVRSGTELYDTSLLCPV-DRS--H 62
          CK  V +S+IR+PL  + S + +      RR A F L++ G + +D + L    D S   
Sbjct: 2  CKGLVEVSEIRIPLKKKFSFFSRLFSSPKRREAFFVLLKYGADEWDATFLLVASDGSFAR 61

Query: 63 TDLTFQDVLLL 73
            + F DV+  
Sbjct: 62 CYVCFDDVIEF 72


>gnl|CDD|223460 COG0383, AMS1, Alpha-mannosidase [Carbohydrate transport and
           metabolism].
          Length = 943

 Score = 29.0 bits (65), Expect = 0.33
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 20  LMWRDSDYFKNKGDYRRFAVFCLVRSGTEL--YDTSLLCPVDRSHTDLTFQDVLLLVVVV 77
           L W D+    N+  +         + GTE   +D+   C  D  H ++ ++   +  V +
Sbjct: 342 LAWNDT----NRFPHDLLRWRW--KDGTENLAHDSICGCSSDPVHREMEYRFEKINQVGL 395

Query: 78  SAVDFGSGGW 87
               +G GG 
Sbjct: 396 YLYGYGDGGG 405


>gnl|CDD|220136 pfam09192, Act-Frag_cataly, Actin-fragmin kinase, catalytic.
           Members of this family assume a secondary structure
           consisting of eight beta strands and 11 alpha-helices,
           organised in two lobes. They are predominantly found in
           actin-fragmin kinase, where they act as a catalytic
           domain that mediates the phosphorylation of actin.
          Length = 270

 Score = 25.5 bits (56), Expect = 5.6
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 17  RLPLM-WRDSDYFKNKGDYRRFAVFCLVRSGTELYDTSLLCPVDRSHTD 64
           RLP + W +S  F N   Y R   F L+ S     D S      R H +
Sbjct: 171 RLPCLNWNNSGNFSNIILYERGWYFSLINSNIHCLDNSSFTIGYRPHIN 219


>gnl|CDD|192528 pfam10307, DUF2410, Hypothetical protein (DUF2410).  This is a
          family of proteins conserved in fungi. The function is
          not known.There are two characteristic sequence motifs,
          GGWW and TGR.
          Length = 200

 Score = 25.0 bits (55), Expect = 7.7
 Identities = 5/11 (45%), Positives = 7/11 (63%)

Query: 81 DFGSGGWWFES 91
           F +GGWW + 
Sbjct: 23 SFANGGWWHDP 33


>gnl|CDD|217530 pfam03390, 2HCT, 2-hydroxycarboxylate transporter family.  The
           2-hydroxycarboxylate transporter family is a family of
           secondary transporters found exclusively in the
           bacterial kingdom. They function in the metabolism of
           the di- and tricarboxylates malate and citrate, mostly
           in fermentative pathways involving decarboxylation of
           malate or oxaloacetate.
          Length = 414

 Score = 24.8 bits (55), Expect = 8.5
 Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 2/27 (7%)

Query: 65  LTFQDVLLLVVVVSAVDFGSG--GWWF 89
           LT Q V++++ VV     G    G   
Sbjct: 331 LTLQYVVIVLSVVLGAVAGGFLVGKLM 357


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.327    0.140    0.459 

Gapped
Lambda     K      H
   0.267   0.0733    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,823,042
Number of extensions: 384464
Number of successful extensions: 406
Number of sequences better than 10.0: 1
Number of HSP's gapped: 405
Number of HSP's successfully gapped: 8
Length of query: 97
Length of database: 10,937,602
Length adjustment: 64
Effective length of query: 33
Effective length of database: 8,098,946
Effective search space: 267265218
Effective search space used: 267265218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)