RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3288
         (97 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.2 bits (65), Expect = 0.19
 Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 12/58 (20%)

Query: 36  RFAVFCLVRSGTEL--YDTSLLCPVDRSHTDLTFQDVLL--LVVVVSA---VDFGSGG 86
           +  V+     G++L     S+         D   +  +         A   +DFG GG
Sbjct: 456 QIPVYD-TFDGSDLRVLSGSIS----ERIVDCIIRLPVKWETTTQFKATHILDFGPGG 508



 Score = 28.5 bits (63), Expect = 0.38
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 27/84 (32%)

Query: 11   VSLSDIRLPLMWRDSDYFKNKGDYRRFAVFC---LVRSGTELYDTSLLCPVDRSHTDLTF 67
            +  +       + D    K+KG     A F    L   G E Y  +L    D     ++ 
Sbjct: 1739 MEKA------AFED---LKSKGLIPADATFAGHSL---G-E-Y-AALASLADV----MSI 1779

Query: 68   QDVLLLV-----VVVSAVDFGSGG 86
            + ++ +V      +  AV     G
Sbjct: 1780 ESLVEVVFYRGMTMQVAVPRDELG 1803



 Score = 26.6 bits (58), Expect = 1.5
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 18/51 (35%)

Query: 46   GTELYDTSLLCPV-----DRSHTDLTFQDVL---LLVVVVS-----AVDFG 83
            G +LY TS          +R+  D  F+D     +L +V++      + FG
Sbjct: 1632 GMDLYKTS---KAAQDVWNRA--DNHFKDTYGFSILDIVINNPVNLTIHFG 1677



 Score = 25.0 bits (54), Expect = 5.6
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 33/102 (32%)

Query: 8   KARVSLSDIRLPLMWRDSDYFK--NKGDYRRFAVF--------CL--VRSGTELYDT--S 53
            AR+     R      +S  F+   +G+ +  A+F            +R   +LY T   
Sbjct: 128 TARIMAK--RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR---DLYQTYHV 182

Query: 54  LLCPVDRSHTDLTFQDVLLLVVVVSAVD----FGSG----GW 87
           L+  + +   +       L  ++ + +D    F  G     W
Sbjct: 183 LVGDLIKFSAE------TLSELIRTTLDAEKVFTQGLNILEW 218


>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate,
           aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes
           faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
          Length = 546

 Score = 27.1 bits (60), Expect = 0.92
 Identities = 9/78 (11%), Positives = 25/78 (32%), Gaps = 5/78 (6%)

Query: 17  RLPLMWRDS--DYFKNKGDYRRFAVFCLVRSGTELYDTSLLCPVDRSHTDLTFQDVLL-- 72
           R   ++R+      +++     + +  L     +LY  +      +  +       +   
Sbjct: 419 RETTLYRELGMPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADE 478

Query: 73  -LVVVVSAVDFGSGGWWF 89
             +V++    FGS     
Sbjct: 479 TGIVLLPGRGFGSNRPSG 496


>1qfg_A FHUA, protein (ferric hydroxamate uptake receptor); TONB-dependent
           receptor, integral outer membrane protein,
           ferrichrome-iron receptor; HET: PA1 GCN KDO GMH GLC GLA
           FTT DAO MYR DDQ; 2.50A {Escherichia coli} SCOP: f.4.3.3
           PDB: 1qff_A* 1qjq_A* 1qkc_A* 2grx_A* 1fi1_A* 2fcp_A*
           1by5_A* 1by3_A* 1fcp_A*
          Length = 725

 Score = 25.8 bits (57), Expect = 2.4
 Identities = 5/23 (21%), Positives = 13/23 (56%)

Query: 17  RLPLMWRDSDYFKNKGDYRRFAV 39
           RL  + R ++  +   + +R+A+
Sbjct: 193 RLTGLARSANAQQKGSEEQRYAI 215


>3qlb_A FETA, enantio-pyochelin receptor; membrane protein, transport,
           ferri-enantiopyochelin, outer M metal transport; HET:
           CIT EFE; 3.26A {Pseudomonas fluorescens}
          Length = 748

 Score = 25.8 bits (57), Expect = 2.9
 Identities = 5/23 (21%), Positives = 8/23 (34%)

Query: 17  RLPLMWRDSDYFKNKGDYRRFAV 39
           RL  + RDS    +     +   
Sbjct: 244 RLVGLERDSGTQFDHIKDDKQYF 266


>2ou2_A Histone acetyltransferase htatip; structural genomics, structural
          genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo
          sapiens}
          Length = 280

 Score = 24.2 bits (52), Expect = 8.6
 Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 2/32 (6%)

Query: 27 YFKNKGDYRRFAVFCLVRS--GTELYDTSLLC 56
          Y ++    +R    C +R   G E+Y    + 
Sbjct: 43 YGRSLKCLQRHLTKCDLRHPPGNEIYRKGTIS 74


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.140    0.459 

Gapped
Lambda     K      H
   0.267   0.0575    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,503,167
Number of extensions: 73126
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 12
Length of query: 97
Length of database: 6,701,793
Length adjustment: 63
Effective length of query: 34
Effective length of database: 4,942,770
Effective search space: 168054180
Effective search space used: 168054180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.8 bits)