RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3288
         (97 letters)



>d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain
           {Physarum polycephalum [TaxId: 5791]}
          Length = 342

 Score = 24.9 bits (54), Expect = 2.1
 Identities = 10/37 (27%), Positives = 13/37 (35%)

Query: 17  RLPLMWRDSDYFKNKGDYRRFAVFCLVRSGTELYDTS 53
           RLP+ W +     N     R A    + S     D S
Sbjct: 204 RLPIAWTNEGNLDNIMLSERGATVVPIDSKIIPLDAS 240


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.140    0.459 

Gapped
Lambda     K      H
   0.267   0.0638    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 378,026
Number of extensions: 13825
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 4
Length of query: 97
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 38
Effective length of database: 1,597,526
Effective search space: 60705988
Effective search space used: 60705988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.1 bits)