BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3289
         (189 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QMO|A Chain A, Structure Of Fril, A Legume Lectin That Delays
           Hematopoietic Progenitor Maturation
 pdb|1QMO|B Chain B, Structure Of Fril, A Legume Lectin That Delays
           Hematopoietic Progenitor Maturation
 pdb|1QMO|C Chain C, Structure Of Fril, A Legume Lectin That Delays
           Hematopoietic Progenitor Maturation
 pdb|1QMO|D Chain D, Structure Of Fril, A Legume Lectin That Delays
           Hematopoietic Progenitor Maturation
          Length = 113

 Score = 27.3 bits (59), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 119 KDLFIEVYAEKINKDFEANKLDEDGNPLQPSDNELL 154
           +DL  + +A   N   +  KLD  GNP+  S   +L
Sbjct: 16  EDLIFQGHATSTNNVLQVTKLDSAGNPVSSSAGRVL 51


>pdb|2GAI|A Chain A, Structure Of Full Length Topoisomerase I From Thermotoga
           Maritima In Triclinic Crystal Form
 pdb|2GAI|B Chain B, Structure Of Full Length Topoisomerase I From Thermotoga
           Maritima In Triclinic Crystal Form
 pdb|2GAJ|A Chain A, Structure Of Full Length Topoisomerase I From Thermotoga
           Maritima In Monoclinic Crystal Form
 pdb|2GAJ|B Chain B, Structure Of Full Length Topoisomerase I From Thermotoga
           Maritima In Monoclinic Crystal Form
          Length = 633

 Score = 26.9 bits (58), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 17/84 (20%)

Query: 55  EEQKLNPDPRFTPTYGVRKVLQTSDGRP--------------VVETIPELIVPNLEGFNL 100
           EEQ+  P PR+T    V+++ +   GRP               ++ I   + P + G  +
Sbjct: 435 EEQETKPKPRYTEGSLVKEMERLGIGRPSTYASTIKLLLNRGYIKKIRGYLYPTIVGSVV 494

Query: 101 KPYVSYRTNEIQTPEFTA---KDL 121
             Y+  + +++ +  FTA   KDL
Sbjct: 495 MDYLEKKYSDVVSVSFTAEMEKDL 518


>pdb|4FD4|A Chain A, Crystal Structure Of Mosquito Arylalkylamine
           N-Acetyltransferase Like 5b
 pdb|4FD4|B Chain B, Crystal Structure Of Mosquito Arylalkylamine
           N-Acetyltransferase Like 5b
          Length = 217

 Score = 26.6 bits (57), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 10/101 (9%)

Query: 96  EGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLD--EDGNPLQPSDNEL 153
           EG  +  YV  +++ +    F+    F+E     + +D  A K        P+QP D + 
Sbjct: 32  EGITI-SYVHGKSHTLDDERFSLS--FVEQGTVVVAEDSAAKKFIGVSIAGPIQPGDPDA 88

Query: 154 LTPEEAEKRARKTGS-----DLFDQEVDVGDRTQITKDYYL 189
           +  E A    +K G       L ++  DV  R  + K Y++
Sbjct: 89  MVEEAATTETKKWGDILKLLALLERTADVCGRYGLEKAYHV 129


>pdb|3PXX|A Chain A, Crystal Structure Of Carveol Dehydrogenase From
           Mycobacterium Avium Bound To Nicotinamide Adenine
           Dinucleotide
 pdb|3PXX|B Chain B, Crystal Structure Of Carveol Dehydrogenase From
           Mycobacterium Avium Bound To Nicotinamide Adenine
           Dinucleotide
 pdb|3PXX|C Chain C, Crystal Structure Of Carveol Dehydrogenase From
           Mycobacterium Avium Bound To Nicotinamide Adenine
           Dinucleotide
 pdb|3PXX|D Chain D, Crystal Structure Of Carveol Dehydrogenase From
           Mycobacterium Avium Bound To Nicotinamide Adenine
           Dinucleotide
 pdb|3PXX|E Chain E, Crystal Structure Of Carveol Dehydrogenase From
           Mycobacterium Avium Bound To Nicotinamide Adenine
           Dinucleotide
 pdb|3PXX|F Chain F, Crystal Structure Of Carveol Dehydrogenase From
           Mycobacterium Avium Bound To Nicotinamide Adenine
           Dinucleotide
          Length = 287

 Score = 26.6 bits (57), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 157 EEAEKRARKTGSDLFDQEVDVGDRTQITKD 186
           EEA     KTG   +  EVDV DR  ++++
Sbjct: 60  EEAGLEVEKTGRKAYTAEVDVRDRAAVSRE 89


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.137    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,922,510
Number of Sequences: 62578
Number of extensions: 247611
Number of successful extensions: 384
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 376
Number of HSP's gapped (non-prelim): 16
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)