BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3289
(189 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7JZM8|RM41_DROME 39S ribosomal protein L41, mitochondrial OS=Drosophila melanogaster
GN=mRpL41 PE=2 SV=1
Length = 166
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/141 (52%), Positives = 95/141 (67%), Gaps = 6/141 (4%)
Query: 36 GKKNFRKFNWIN-RGTQQHREEQK--LNPDPRFTPTYGVRKVLQTSDGR--PVVETIPEL 90
GK+NFRKFN N RGT+ +E QK NP P GVR DG+ + E IP++
Sbjct: 27 GKRNFRKFNAYNKRGTRVVKEAQKTLANP-PVAIHKRGVRDTGILVDGQYVEIPEKIPDI 85
Query: 91 IVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLDEDGNPLQPSD 150
IVP+L G LKPYVSY+ ++ EFT+ DLF VY++KI +DF+A KL +DG+ +PS
Sbjct: 86 IVPDLTGCKLKPYVSYKAPDVVQSEFTSLDLFNAVYSQKIIEDFKAGKLQKDGSAKEPSV 145
Query: 151 NELLTPEEAEKRARKTGSDLF 171
NE LTPEEA +RARKTGSD+F
Sbjct: 146 NEQLTPEEALQRARKTGSDIF 166
>sp|Q291A0|RM41_DROPS 39S ribosomal protein L41, mitochondrial OS=Drosophila
pseudoobscura pseudoobscura GN=mRpL41 PE=3 SV=1
Length = 166
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 36 GKKNFRKFN-WINRGTQQHREEQKLNPDPRF-TPTYGVRKVLQTSDGR--PVVETIPELI 91
GK+NFRKFN RGT+ +E QK +P GVR DG+ + E IP++I
Sbjct: 27 GKRNFRKFNVHSKRGTRVVKEAQKTMANPPVPIDKRGVRDTGILVDGKFVEIPEKIPDII 86
Query: 92 VPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLDEDGNPLQPSDN 151
VP+L LKPYVSY+ E+ EFT+ DLF VY++KI +DF+A L DG+P +PS
Sbjct: 87 VPDLTDCKLKPYVSYKAPEVVQSEFTSLDLFNAVYSKKIVEDFKAGSLQADGSPKEPSAE 146
Query: 152 ELLTPEEAEKRARKTGSDLF 171
E LT EA RAR+TGSD+F
Sbjct: 147 EKLTSSEAFLRARRTGSDIF 166
>sp|Q9CQN7|RM41_MOUSE 39S ribosomal protein L41, mitochondrial OS=Mus musculus GN=Mrpl41
PE=2 SV=1
Length = 135
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 50/85 (58%), Gaps = 6/85 (7%)
Query: 63 PR-FTPTYGVRKV-LQTSDGR--PVVETIPELIVPNLEGFNLKPYVSYRTNE-IQTPEFT 117
PR FT + G +K + TSD + + E +PE +VP+L GF LKPYV+YR I TP T
Sbjct: 27 PRTFTKSRGAKKTGIYTSDRKFVQIKEMVPEFVVPDLTGFKLKPYVNYRAPAGIDTP-LT 85
Query: 118 AKDLFIEVYAEKINKDFEANKLDED 142
AK LF E A I KDF+ D +
Sbjct: 86 AKALFQETVAPAIEKDFKEGTFDAN 110
>sp|Q8IXM3|RM41_HUMAN 39S ribosomal protein L41, mitochondrial OS=Homo sapiens GN=MRPL41
PE=1 SV=1
Length = 137
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 34/60 (56%)
Query: 83 VVETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLDED 142
+ E +PE +VP+L GF LKPYVSY E + TA LF E A I KDF+ D D
Sbjct: 53 IKEMVPEFVVPDLTGFKLKPYVSYLAPESEETPLTAAQLFSEAVAPAIEKDFKDGTFDPD 112
>sp|Q5BJX1|RM41_RAT 39S ribosomal protein L41, mitochondrial OS=Rattus norvegicus
GN=Mrpl41 PE=1 SV=1
Length = 134
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
Query: 69 YGVRKVLQTSDGRPVVETIPELIVPNLEGFNLKPYVSYRTNE-IQTPEFTAKDLFIEVYA 127
Y RK +Q + E +PE +VP+L GF LKPYV+YR I TP TAK LF+E A
Sbjct: 42 YTNRKFVQ------IKEMVPEFVVPDLTGFKLKPYVNYRAPAGIDTP-LTAKALFLETVA 94
Query: 128 EKINKDFEANKLDED 142
I KDF+ D +
Sbjct: 95 PAIEKDFKEGTFDAN 109
>sp|Q502B0|RM41_DANRE 39S ribosomal protein L41, mitochondrial OS=Danio rerio GN=mrpl41
PE=2 SV=1
Length = 135
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 35/61 (57%)
Query: 82 PVVETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLDE 141
P+ IPE VPNLEGFNLK YVSY+T T + LF EV A +I +D E E
Sbjct: 50 PIRAMIPEFAVPNLEGFNLKAYVSYKTPAGTEEPMTPEKLFNEVVAPQIQRDIEEGVFSE 109
Query: 142 D 142
D
Sbjct: 110 D 110
>sp|Q6INF3|RM41B_XENLA 39S ribosomal protein L41-B, mitochondrial OS=Xenopus laevis
GN=mrpl41-b PE=2 SV=1
Length = 135
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 46 INRGTQQHRE-EQKLNPDPRFTPTYGVRKV-LQTSDGR--PVVETIPELIVPNLEGFNLK 101
+ RG + E KL P+ + G +K+ TS G+ V E +P +VP+L GF LK
Sbjct: 11 LVRGADRMAECTSKLGPN-SYNKGRGAKKIGYLTSSGKFVKVREMVPVFVVPDLTGFKLK 69
Query: 102 PYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFE 135
PYVSY+ TAK LF+E +I KD +
Sbjct: 70 PYVSYKAPPGTEDPMTAKKLFMETVGPQIEKDLQ 103
>sp|Q6DJI4|RM41A_XENLA 39S ribosomal protein L41-A, mitochondrial OS=Xenopus laevis
GN=mrpl41-a PE=2 SV=1
Length = 135
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%)
Query: 83 VVETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFE 135
V E +P +VP+L GF LKPYVSY+ TAK LF+E +I KD +
Sbjct: 51 VREMVPVFVVPDLTGFKLKPYVSYKAPPGTEDPMTAKKLFMETVGPQIEKDLQ 103
>sp|P90993|RM41_CAEEL 39S ribosomal protein L41, mitochondrial OS=Caenorhabditis elegans
GN=mrpl-41 PE=3 SV=1
Length = 180
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 14/84 (16%)
Query: 36 GKKNFRKFNWINRGTQQHREEQKLNPD-PRFTPTYGVRKVLQTSDG---------RPVVE 85
G N+ KF W Q+RE +L+P + P R +DG PV E
Sbjct: 37 GPMNYEKFKWPG----QNREFPELSPKFQKLNPKELHRYTGVQADGFHDEKTGEFVPVKE 92
Query: 86 TIPELIVPNLEGFNLKPYVSYRTN 109
EL+VPNL+GF L+PYVSYRT+
Sbjct: 93 MRSELVVPNLDGFKLRPYVSYRTD 116
>sp|Q1WUM1|Y505_LACS1 UPF0348 protein LSL_0505 OS=Lactobacillus salivarius (strain
UCC118) GN=LSL_0505 PE=3 SV=1
Length = 380
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 23 VSGSGYGSTGASYGKKNFRKFNWINRGTQQHREEQKLNPDPRFTPTYGVRKVLQTSDGRP 82
V G Y +GKK K N I+R + + + L+PD +RKVL + D
Sbjct: 153 VLGLAYAKANLKFGKK--LKLNPISRNVAGYHD-KSLSPDSNIASATAIRKVLFSKDHNL 209
Query: 83 VVETIP 88
V + +P
Sbjct: 210 VDKYLP 215
>sp|Q19954|VPS41_CAEEL Vacuolar protein sorting-associated protein 41 homolog
OS=Caenorhabditis elegans GN=vps-41 PE=3 SV=4
Length = 901
Score = 30.8 bits (68), Expect = 5.5, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 112 QTPEFTAKDLFIEVYAEKINKDFEANKLDEDGNPLQPS-DNELLTPEEA---EKRARKTG 167
+T E A D F V+ + D N D+D PL+P E L EE K A T
Sbjct: 3 ETHENEASDSFDPVFENSYHDDVTFNTEDDDEPPLEPRFKYERLKGEETLPFMKTATFTS 62
Query: 168 SDLFDQEVDVGDRT 181
DL D+ + +G T
Sbjct: 63 IDLHDKFIAIGTAT 76
>sp|B3QUS0|NUOD1_CHLT3 NADH-quinone oxidoreductase subunit D 1 OS=Chloroherpeton
thalassium (strain ATCC 35110 / GB-78) GN=nuoD1 PE=3
SV=1
Length = 440
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 59 LNPDPRFTPTYGVRKVLQTSDGRPVVETIPEL 90
LN P+ T+GV +V+ DG VV +PEL
Sbjct: 59 LNMGPQHPATHGVLRVVLKLDGERVVHAVPEL 90
>sp|P09846|RPOA1_METTW DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoA1 PE=3 SV=2
Length = 865
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 102 PYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLDEDGNPLQPSDNELLTPEEAEK 161
P VS NE+ PE AK++ + VY + N D + E+G + P N ++ P+ +
Sbjct: 326 PNVS--VNEVGVPELIAKEVTVPVYVTEWNIDRMKEHI-ENGPDVHPGANYVIRPDGRKI 382
Query: 162 RARKTGSDLF 171
RA D+
Sbjct: 383 RAYNETKDVV 392
>sp|A4XV04|NUOCD_PSEMY NADH-quinone oxidoreductase subunit C/D OS=Pseudomonas mendocina
(strain ymp) GN=nuoC PE=3 SV=1
Length = 593
Score = 30.0 bits (66), Expect = 9.4, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 40 FRKFNWINRGTQQHREEQKLNPDPRFTPTYGVRKVLQTSDGRPVVETIPEL 90
FR +W + +H + LN P +G +++ DG +V+ +PE+
Sbjct: 193 FRPEDWGMKRGGEHEDYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPEI 243
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,473,542
Number of Sequences: 539616
Number of extensions: 3756667
Number of successful extensions: 8059
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 8040
Number of HSP's gapped (non-prelim): 33
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)