Query psy3289
Match_columns 189
No_of_seqs 100 out of 113
Neff 2.9
Searched_HMMs 46136
Date Fri Aug 16 21:12:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3289.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3289hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09809 MRP-L27: Mitochondria 100.0 9.6E-45 2.1E-49 283.1 6.7 106 37-154 1-113 (113)
2 KOG4756|consensus 99.9 9.9E-24 2.1E-28 170.9 3.4 108 36-154 27-141 (146)
3 PF12518 DUF3721: Protein of u 49.2 14 0.0003 24.1 1.8 15 155-169 3-17 (34)
4 TIGR00449 tgt_general tRNA-gua 45.9 20 0.00043 32.9 3.0 34 138-171 101-137 (367)
5 PF03413 PepSY: Peptidase prop 40.2 18 0.00038 23.3 1.3 14 153-166 1-14 (64)
6 COG1099 Predicted metal-depend 39.8 19 0.00042 32.5 1.9 35 143-180 181-215 (254)
7 TIGR00430 Q_tRNA_tgt tRNA-guan 37.9 26 0.00057 32.2 2.5 36 138-173 101-139 (368)
8 PRK10203 hypothetical protein; 37.0 82 0.0018 25.4 4.9 38 120-158 2-42 (122)
9 PF13266 DUF4057: Protein of u 36.7 26 0.00056 32.4 2.2 32 144-175 38-87 (302)
10 PLN02956 PSII-Q subunit 31.6 29 0.00064 30.0 1.6 46 124-173 53-99 (185)
11 smart00250 PLEC Plectin repeat 30.8 39 0.00084 21.2 1.7 17 146-162 14-30 (38)
12 PRK01008 queuine tRNA-ribosylt 30.4 38 0.00083 31.6 2.3 35 138-172 121-158 (372)
13 COG1084 Predicted GTPase [Gene 30.0 23 0.0005 33.2 0.8 13 6-19 217-229 (346)
14 PF08269 Cache_2: Cache domain 27.6 28 0.0006 24.9 0.7 17 150-166 31-47 (95)
15 PF09941 DUF2173: Uncharacteri 26.5 34 0.00074 27.1 1.1 30 135-166 14-43 (108)
16 PRK12737 gatY tagatose-bisphos 25.0 47 0.001 29.7 1.8 19 153-171 154-172 (284)
17 PRK07709 fructose-bisphosphate 24.6 52 0.0011 29.5 2.0 18 154-171 156-173 (285)
18 smart00481 POLIIIAc DNA polyme 22.7 75 0.0016 21.2 2.1 21 151-171 12-32 (67)
19 KOG0183|consensus 22.3 70 0.0015 28.9 2.3 70 51-129 110-180 (249)
20 TIGR00798 mtc tricarboxylate c 22.1 1.1E+02 0.0023 28.4 3.6 29 125-166 39-67 (318)
21 PRK08610 fructose-bisphosphate 21.9 59 0.0013 29.2 1.8 18 154-171 156-173 (286)
22 cd00947 TBP_aldolase_IIB Tagat 21.3 61 0.0013 28.9 1.8 20 153-172 147-166 (276)
23 COG3502 Uncharacterized protei 21.2 57 0.0012 26.5 1.4 26 151-178 6-32 (115)
24 PRK12738 kbaY tagatose-bisphos 21.1 68 0.0015 28.8 2.0 18 154-171 155-172 (286)
25 PF02799 NMT_C: Myristoyl-CoA: 20.8 46 0.001 28.6 0.9 27 157-184 129-155 (190)
26 PF05198 IF3_N: Translation in 20.6 36 0.00077 25.0 0.2 22 150-171 24-45 (76)
27 PRK09195 gatY tagatose-bisphos 20.2 1.2E+02 0.0026 27.2 3.4 19 153-171 154-172 (284)
No 1
>PF09809 MRP-L27: Mitochondrial ribosomal protein L27; InterPro: IPR019189 Proteins in this entry are components of the mitochondrial ribosome large subunit. They are also involved in apoptosis and cell cycle regulation.
Probab=100.00 E-value=9.6e-45 Score=283.12 Aligned_cols=106 Identities=46% Similarity=0.737 Sum_probs=104.3
Q ss_pred cccceeeeecc-ccchhhhhhhhcCCCCCCCCCCCCccceeee-cCcee--ecccCceecCCCCCCcccccccccCCCCC
Q psy3289 37 KKNFRKFNWIN-RGTQQHREEQKLNPDPRFTPTYGVRKVLQTS-DGRPV--VETIPELIVPNLEGFNLKPYVSYRTNEIQ 112 (189)
Q Consensus 37 krNFRKf~Lyn-rg~R~f~K~q~~np~~~~pig~G~~~~G~ht-~G~fV--~ekvPe~VVPDLtgFKLKPYVSyrtp~v~ 112 (189)
|+|||+++|++ |||+.||| |+|++++|+|+ +|+|| |+|||+||||||+||+|||||||++|.+.
T Consensus 1 K~~~rr~~LttK~g~k~fyK------------G~g~~~~G~~t~~g~yvi~~~kvp~~VVPdL~~f~LKPyVS~~~p~~~ 68 (113)
T PF09809_consen 1 KRGFRRFPLTTKRGNKGFYK------------GTGARGTGRHTKKGGYVIVPEKVPEFVVPDLTDFKLKPYVSYRTPEVK 68 (113)
T ss_pred CCcccccccccccCCccccC------------CcCCCCCcEEccCccEEECHHHCceeeCCCCCCCccccccccCccccc
Confidence 57999999999 99999999 99999999999 99999 99999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhCCCCCCCC---CCCCCCCCCC
Q psy3289 113 TPEFTAKDLFIEVYAEKINKDFEANKLDEDGN---PLQPSDNELL 154 (189)
Q Consensus 113 ~~~~TA~~LF~~vyapkI~kDfKeG~~d~d~~---~~ePs~eekL 154 (189)
++||||++||+++|||+|.+|||+|++|+|++ .+||+|+|+|
T Consensus 69 ~~~~Ta~~lf~~~~~~~i~~dfk~G~~d~~~~~~~~~e~~~~gkl 113 (113)
T PF09809_consen 69 QEEFTAKDLFNAVYAPKIFKDFKEGKLDPELLEKYGFEPSEEGKL 113 (113)
T ss_pred cccccHHHHHHHHhhHHHhhhhhcCCCCHHHHHhhccCccccCcC
Confidence 99999999999999999999999999999999 7999999997
No 2
>KOG4756|consensus
Probab=99.88 E-value=9.9e-24 Score=170.94 Aligned_cols=108 Identities=19% Similarity=0.278 Sum_probs=95.1
Q ss_pred ccccceeeeecc-ccchhhhhhhhcCCCCCCCCCCCCccceeee-cCcee--ecccCceecCCCCCCcccccccccCCCC
Q psy3289 36 GKKNFRKFNWIN-RGTQQHREEQKLNPDPRFTPTYGVRKVLQTS-DGRPV--VETIPELIVPNLEGFNLKPYVSYRTNEI 111 (189)
Q Consensus 36 GkrNFRKf~Lyn-rg~R~f~K~q~~np~~~~pig~G~~~~G~ht-~G~fV--~ekvPe~VVPDLtgFKLKPYVSyrtp~v 111 (189)
|+-.|+.-.|.+ |++|.||. ||. +++.|+||..+|+|| +|+|+ |||+||||||||+|||||||||
T Consensus 27 ~~~a~glsK~g~kr~Pr~~k~----~~k-~l~kgtgakgiGfht~kggyvV~~ekv~eyVvPdl~gFkLkPYVs------ 95 (146)
T KOG4756|consen 27 KKGASGLSKLGPKRAPRDFKL----NPK-ELHKGTGAKGIGFHTRKGGYVVQPEKVPEYVVPDLTGFKLKPYVS------ 95 (146)
T ss_pred cccccchhhhccccCchhhhc----Cch-hhcccccccccceeeccccEEeCHhhccceeccCccCceecccee------
Confidence 444566667888 99999885 443 677799999999999 67777 9999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhCCCCCCCCC---CCCCCCCCC
Q psy3289 112 QTPEFTAKDLFIEVYAEKINKDFEANKLDEDGNP---LQPSDNELL 154 (189)
Q Consensus 112 ~~~~~TA~~LF~~vyapkI~kDfKeG~~d~d~~~---~ePs~eekL 154 (189)
.+-|+++-+++..+.+|.++++++-++++++.+. ||+.++.++
T Consensus 96 ~q~p~~~~q~~~~~~~p~serl~~l~t~ep~~~~~~~fE~a~~~t~ 141 (146)
T KOG4756|consen 96 VQCPLRRVQVNTNESTPASERLADLHTVEPKMSAETLFELAYGDTV 141 (146)
T ss_pred ccCchhHhhhcccccCccchhhhhccccCcccchhhccccccCcee
Confidence 7888999999999999999999999999999888 999988765
No 3
>PF12518 DUF3721: Protein of unknown function; InterPro: IPR022196 This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length. There is a conserved WMPC sequence motif. There are two completely conserved residues (A and C) that may be functionally important.
Probab=49.19 E-value=14 Score=24.15 Aligned_cols=15 Identities=53% Similarity=0.702 Sum_probs=13.5
Q ss_pred CHHHHHHHHHhhcCc
Q psy3289 155 TPEEAEKRARKTGSD 169 (189)
Q Consensus 155 tpeeA~~~A~~tgsD 169 (189)
|-+||..+|++.||-
T Consensus 3 tk~eAe~~A~~~GC~ 17 (34)
T PF12518_consen 3 TKAEAEKRAKELGCK 17 (34)
T ss_pred cHHHHHHHHHHcCCc
Confidence 779999999999983
No 4
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities. Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely.
Probab=45.92 E-value=20 Score=32.92 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCCCCCC---CCHHHHHHHHHhhcCccc
Q psy3289 138 KLDEDGNPLQPSDNEL---LTPEEAEKRARKTGSDLF 171 (189)
Q Consensus 138 ~~d~d~~~~ePs~eek---LtpeeA~~~A~~tgsDif 171 (189)
+..++|-.|+..-.+. ||||++.+-.++.||||.
T Consensus 101 ~i~~~Gv~f~s~~dg~~~~ltpe~~i~~q~~ig~DI~ 137 (367)
T TIGR00449 101 KIEEEGVHFKSPIDGSKIFLTPEKIMEIQYALGSDII 137 (367)
T ss_pred ccCCCceeeecCCCCCceecCHHHHHHHHHHHCCCEE
Confidence 5566666665554444 899999999999999996
No 5
>PF03413 PepSY: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR005075 This signature, PepSY, is found in the propeptide of members of the MEROPS peptidase family M4 (clan MA(E)), which contains the thermostable thermolysins (3.4.24.27 from EC), and related thermolabile neutral proteases (bacillolysins) (3.4.24.28 from EC) from various species of Bacillus. It is also in many non-peptidase proteins, including Bacillus subtilis YpeB protein - a regulator of SleB spore cortex lytic enzyme - and a large number of eubacterial and archaeal cell wall-associated and secreted proteins which are mostly annotated as 'hypothetical protein'. Many extracellular bacterial proteases are produced as proenzymes. The propeptides usually have a dual function, i.e. they function as an intramolecular chaperone required for the folding of the polypeptide and as an inhibitor preventing premature activation of the enzyme. Analysis of the propeptide region of the M4 family of peptidases reveals two regions of conservation, the PepSY domain and a second domain, proximate to the N terminus, the FTP domain (IPR011096 from INTERPRO), which is also found in isolation in the propeptide of eukaryotic peptidases belong to MEROPS peptidase family M36. Propeptide domain swapping experiments, for example swapping the propeptide domain of PA protease with that of vibrolysin, both propeptides contain the FTP and PepSY domains, allows the PA protease domain to fold correctly and inhibits the C-terminal autoprocessing activity. However, swapping the propeptide of PA protease for the thermolysin propeptide, does not facilitate the correct folding nor the processing of the chimaeric protein into an active peptidase []. Mutational analysis of the Pseudomonas aeruginosa elastase gene revealed two mutations in the propeptide which resulted in the loss of inhibitory activity but not chaperone activity: A-15V and T-153I (where +1 is defined as the first residue of the mature peptidase). Both mutations resulted in peptidase activity, the T-153V mutation being much less effective than the A-15I mutation [] in activating peptidase activity. The T-153V mutation lies N-terminal to the FTP domain while the A-15I mutation is C-terminal to the PepSY domain. Given the diverse range of other proteins, both domains occur in in isolation, the exact function of each is still unclear; though it has been proposed that the PepSY domain primarily has inhibitory activity and in conjunction with the FTP domain in chaperone activity. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 2GU3_A 3NQZ_A 3NQY_A 2KGY_A.
Probab=40.18 E-value=18 Score=23.28 Aligned_cols=14 Identities=29% Similarity=0.233 Sum_probs=10.3
Q ss_pred CCCHHHHHHHHHhh
Q psy3289 153 LLTPEEAEKRARKT 166 (189)
Q Consensus 153 kLtpeeA~~~A~~t 166 (189)
|||++||+..|.+.
T Consensus 1 kis~~~A~~~A~~~ 14 (64)
T PF03413_consen 1 KISEEQAVEIALKQ 14 (64)
T ss_dssp ---HHHHHHHHHCC
T ss_pred CcCHHHHHHHHHHH
Confidence 68999999999887
No 6
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=39.83 E-value=19 Score=32.53 Aligned_cols=35 Identities=34% Similarity=0.413 Sum_probs=28.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhcCccccCccccCCc
Q psy3289 143 GNPLQPSDNELLTPEEAEKRARKTGSDLFDQEVDVGDR 180 (189)
Q Consensus 143 ~~~~ePs~eekLtpeeA~~~A~~tgsDif~~~~~~~~~ 180 (189)
|+-..| +|||++||..-.++-|+|=|--+.|.|.+
T Consensus 181 GlTvqP---gKlt~~eAveIV~ey~~~r~ilnSD~~s~ 215 (254)
T COG1099 181 GLTVQP---GKLTVEEAVEIVREYGAERIILNSDAGSA 215 (254)
T ss_pred EEEecC---CcCCHHHHHHHHHHhCcceEEEecccccc
Confidence 444777 99999999999999999988777776643
No 7
>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming. This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes.
Probab=37.94 E-value=26 Score=32.21 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCCCCC---CCCHHHHHHHHHhhcCccccC
Q psy3289 138 KLDEDGNPLQPSDNE---LLTPEEAEKRARKTGSDLFDQ 173 (189)
Q Consensus 138 ~~d~d~~~~ePs~ee---kLtpeeA~~~A~~tgsDif~~ 173 (189)
+..++|-.|+..-.+ .||||++..--+..||||+.+
T Consensus 101 ~i~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~igsDI~m~ 139 (368)
T TIGR00430 101 KIEEEGVHFKSPIDGSKIFLTPEKSMEIQYALGSDIIMA 139 (368)
T ss_pred cCCCCceEeecCCCCceEEEcHHHHHHHHHHhCCCEEEE
Confidence 556666666555444 499999999999999999743
No 8
>PRK10203 hypothetical protein; Provisional
Probab=37.01 E-value=82 Score=25.41 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhhhCCCCC---CCCCCCCCCCCCCCHHH
Q psy3289 120 DLFIEVYAEKINKDFEANKLDE---DGNPLQPSDNELLTPEE 158 (189)
Q Consensus 120 ~LF~~vyapkI~kDfKeG~~d~---d~~~~ePs~eekLtpee 158 (189)
++|+..+-.+|++.-++|.||. .|.|+.. ......|+|
T Consensus 2 ~~~~~~~E~~I~eA~~~GefdnLpG~GKPL~~-~d~~~~p~e 42 (122)
T PRK10203 2 WLLDQWAERHILEAQRKGEFDNLPGSGEPLIL-DDDSHVPPE 42 (122)
T ss_pred cHHHHHHHHHHHHHHHcCCccCCCCCCCCCCC-ccCCCCCHH
Confidence 4788999999999999999986 6777744 444556655
No 9
>PF13266 DUF4057: Protein of unknown function (DUF4057)
Probab=36.66 E-value=26 Score=32.45 Aligned_cols=32 Identities=41% Similarity=0.487 Sum_probs=23.8
Q ss_pred CCCCCCC-------CCCCCHHHHHHHH-----------HhhcCccccCcc
Q psy3289 144 NPLQPSD-------NELLTPEEAEKRA-----------RKTGSDLFDQEV 175 (189)
Q Consensus 144 ~~~ePs~-------eekLtpeeA~~~A-----------~~tgsDif~~~~ 175 (189)
-+-.|+. -+.||.|||.-.- +.|||+||..+-
T Consensus 38 RshQPs~giskv~fGgQvT~EEAEsL~KRKpCS~~K~KEmTGSGIF~~~~ 87 (302)
T PF13266_consen 38 RSHQPSDGISKVVFGGQVTEEEAESLNKRKPCSGYKMKEMTGSGIFSANG 87 (302)
T ss_pred CCCCCcccccccccCCcCCHHHHHHHhccCcCccccceecccccccccCC
Confidence 3367775 6899999997654 469999996554
No 10
>PLN02956 PSII-Q subunit
Probab=31.60 E-value=29 Score=30.03 Aligned_cols=46 Identities=26% Similarity=0.276 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhh-hCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhcCccccC
Q psy3289 124 EVYAEKINKDFE-ANKLDEDGNPLQPSDNELLTPEEAEKRARKTGSDLFDQ 173 (189)
Q Consensus 124 ~vyapkI~kDfK-eG~~d~d~~~~ePs~eekLtpeeA~~~A~~tgsDif~~ 173 (189)
.+.+.++.-.|. +|.++=|-..++|- +|||||..|+|++.-||-.-
T Consensus 53 ~~~~~~~~~~~~~~~a~~f~~~~~~p~----~speeA~ar~k~~A~~l~~L 99 (185)
T PLN02956 53 GVLLAQLEASFNVAIAFGFDLRLTAPE----RTVEEAESGVRGHAENLLRV 99 (185)
T ss_pred HHHHhhhccccchhhccccceeecCCC----CCHHHHHHHHHHHHHHHHHH
Confidence 334444333332 45555555556663 89999999999999888543
No 11
>smart00250 PLEC Plectin repeat.
Probab=30.84 E-value=39 Score=21.19 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=14.7
Q ss_pred CCCCCCCCCCHHHHHHH
Q psy3289 146 LQPSDNELLTPEEAEKR 162 (189)
Q Consensus 146 ~ePs~eekLtpeeA~~~ 162 (189)
+.|...++||.+||+.+
T Consensus 14 idp~t~~~lsv~eA~~~ 30 (38)
T smart00250 14 IDPETGQKLSVEEALRR 30 (38)
T ss_pred EcCCCCCCcCHHHHHHc
Confidence 56778999999999875
No 12
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=30.39 E-value=38 Score=31.56 Aligned_cols=35 Identities=20% Similarity=0.421 Sum_probs=25.0
Q ss_pred CCCCCCCCCCCCCCC---CCCHHHHHHHHHhhcCcccc
Q psy3289 138 KLDEDGNPLQPSDNE---LLTPEEAEKRARKTGSDLFD 172 (189)
Q Consensus 138 ~~d~d~~~~ePs~ee---kLtpeeA~~~A~~tgsDif~ 172 (189)
+.++||-.|+.--.+ .||||++..--+..||||..
T Consensus 121 ~i~e~Gv~F~s~~dG~~~~ltPe~~i~~Q~~iGsDI~m 158 (372)
T PRK01008 121 KITDEGVWFKSYRDGRKLFLSPEISVQAQKDLGADIII 158 (372)
T ss_pred eecCCCeEEecCCCCCceeeCHHHHHHHHHHHCCCEEE
Confidence 455666555432222 39999999999999999963
No 13
>COG1084 Predicted GTPase [General function prediction only]
Probab=29.99 E-value=23 Score=33.23 Aligned_cols=13 Identities=54% Similarity=1.150 Sum_probs=10.3
Q ss_pred eecccCCCccccCC
Q psy3289 6 LQIIDVPGPIIDRG 19 (189)
Q Consensus 6 ~~~~~~~~~~~~~~ 19 (189)
.|+||||| |.||-
T Consensus 217 ~QvIDTPG-lLDRP 229 (346)
T COG1084 217 IQVIDTPG-LLDRP 229 (346)
T ss_pred EEEecCCc-ccCCC
Confidence 69999999 56763
No 14
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=27.62 E-value=28 Score=24.85 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=10.1
Q ss_pred CCCCCCHHHHHHHHHhh
Q psy3289 150 DNELLTPEEAEKRARKT 166 (189)
Q Consensus 150 ~eekLtpeeA~~~A~~t 166 (189)
+.++||.|||..+|+..
T Consensus 31 ~~g~ls~eea~~~a~~~ 47 (95)
T PF08269_consen 31 QAGKLSEEEAQQQAREA 47 (95)
T ss_dssp STT-----TTHHHHHHH
T ss_pred hcCCccHHHHHHHHHHH
Confidence 46889999999999886
No 15
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=26.51 E-value=34 Score=27.14 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=24.6
Q ss_pred hhCCCCCCCCCCCCCCCCCCCHHHHHHHHHhh
Q psy3289 135 EANKLDEDGNPLQPSDNELLTPEEAEKRARKT 166 (189)
Q Consensus 135 KeG~~d~d~~~~ePs~eekLtpeeA~~~A~~t 166 (189)
-.|.|.+||..+ +-++.|++|+|.+.|+--
T Consensus 14 AAg~Fs~~G~l~--e~~G~l~~~~a~m~A~mc 43 (108)
T PF09941_consen 14 AAGEFSDDGKLV--EYKGELDEEMAEMLAKMC 43 (108)
T ss_pred EEEEECCCCeEE--eeecCCCHHHHHHHHHHH
Confidence 468899999987 457799999999988743
No 16
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=25.04 E-value=47 Score=29.69 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHhhcCccc
Q psy3289 153 LLTPEEAEKRARKTGSDLF 171 (189)
Q Consensus 153 kLtpeeA~~~A~~tgsDif 171 (189)
-=+||||+.-+++||+|..
T Consensus 154 ~T~peeA~~Fv~~TgvD~L 172 (284)
T PRK12737 154 YTNPDAAAEFVERTGIDSL 172 (284)
T ss_pred CCCHHHHHHHHHHhCCCEE
Confidence 3489999999999999975
No 17
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=24.60 E-value=52 Score=29.49 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHhhcCccc
Q psy3289 154 LTPEEAEKRARKTGSDLF 171 (189)
Q Consensus 154 LtpeeA~~~A~~tgsDif 171 (189)
=+||||+.-+++||+|..
T Consensus 156 T~peeA~~Fv~~TgvD~L 173 (285)
T PRK07709 156 ADPAECKHLVEATGIDCL 173 (285)
T ss_pred CCHHHHHHHHHHhCCCEE
Confidence 489999999999999975
No 18
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=22.72 E-value=75 Score=21.20 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=18.9
Q ss_pred CCCCCHHHHHHHHHhhcCccc
Q psy3289 151 NELLTPEEAEKRARKTGSDLF 171 (189)
Q Consensus 151 eekLtpeeA~~~A~~tgsDif 171 (189)
.+.++|++.+.+|++.|-|.+
T Consensus 12 ~~~~~~~~~~~~a~~~g~~~v 32 (67)
T smart00481 12 DGALSPEELVKRAKELGLKAI 32 (67)
T ss_pred cccCCHHHHHHHHHHcCCCEE
Confidence 677899999999999999875
No 19
>KOG0183|consensus
Probab=22.26 E-value=70 Score=28.94 Aligned_cols=70 Identities=16% Similarity=0.206 Sum_probs=57.8
Q ss_pred hhhhhhhhcCCCCCCCCCCCCccceeee-cCceeecccCceecCCCCCCcccccccccCCCCCCCCCCHHHHHHHHHHHH
Q psy3289 51 QQHREEQKLNPDPRFTPTYGVRKVLQTS-DGRPVVETIPELIVPNLEGFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEK 129 (189)
Q Consensus 51 R~f~K~q~~np~~~~pig~G~~~~G~ht-~G~fV~ekvPe~VVPDLtgFKLKPYVSyrtp~v~~~~~TA~~LF~~vyapk 129 (189)
|+--.+|+++.. -+|.||.|..+ =|+|-+.-.|-+.+-|=+| -|-.|++-.+....=|.++.++.-|+++
T Consensus 110 RyiA~~kQrYTq-----s~grRPFGvs~Li~GfD~~g~p~lyqtePsG----~f~ewka~aiGr~sk~VrEflEK~y~e~ 180 (249)
T KOG0183|consen 110 RYIAGLKQRYTQ-----SNGRRPFGVSTLIGGFDPDGTPRLYQTEPSG----IFSEWKANAIGRSSKTVREFLEKNYKEE 180 (249)
T ss_pred HHHHHhhhhhhc-----cCCcccccceEEEEeeCCCCCeeeEeeCCCc----chhhhhccccccccHHHHHHHHHhcccc
Confidence 444446777776 78999999999 8889877789998888887 6899999999999999999998888766
No 20
>TIGR00798 mtc tricarboxylate carrier. The MTC family consists of a limited number of homologues, all from eukaryotes. A single member of the family has been functionally characterized, the tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism.
Probab=22.12 E-value=1.1e+02 Score=28.45 Aligned_cols=29 Identities=38% Similarity=0.391 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCHHHHHHHHHhh
Q psy3289 125 VYAEKINKDFEANKLDEDGNPLQPSDNELLTPEEAEKRARKT 166 (189)
Q Consensus 125 vyapkI~kDfKeG~~d~d~~~~ePs~eekLtpeeA~~~A~~t 166 (189)
--|.+|.++||.|+. ..+|+||.| +|+|.
T Consensus 39 ~~a~~ll~~yr~g~~------------~~~t~~~lW-~Akk~ 67 (318)
T TIGR00798 39 EKAREIVEDYKAGKA------------SPLTVDELW-RAKKL 67 (318)
T ss_pred HHHHHHHHHHhcCCC------------CCCCHHHHH-HHHHH
Confidence 457899999999885 125678888 88875
No 21
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=21.87 E-value=59 Score=29.21 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHhhcCccc
Q psy3289 154 LTPEEAEKRARKTGSDLF 171 (189)
Q Consensus 154 LtpeeA~~~A~~tgsDif 171 (189)
=+||||..-+++||+|..
T Consensus 156 T~peea~~Fv~~TgvD~L 173 (286)
T PRK08610 156 ADPKECQELVEKTGIDAL 173 (286)
T ss_pred CCHHHHHHHHHHHCCCEE
Confidence 489999999999999975
No 22
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=21.33 E-value=61 Score=28.92 Aligned_cols=20 Identities=45% Similarity=0.609 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHhhcCcccc
Q psy3289 153 LLTPEEAEKRARKTGSDLFD 172 (189)
Q Consensus 153 kLtpeeA~~~A~~tgsDif~ 172 (189)
-=+||||..-+++||+|..-
T Consensus 147 ~T~pe~a~~Fv~~TgvD~LA 166 (276)
T cd00947 147 LTDPEEAEEFVEETGVDALA 166 (276)
T ss_pred CCCHHHHHHHHHHHCCCEEE
Confidence 44799999999999999863
No 23
>COG3502 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.23 E-value=57 Score=26.53 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=19.6
Q ss_pred CCCCCHHHHHHHHHhhcCccc-cCccccC
Q psy3289 151 NELLTPEEAEKRARKTGSDLF-DQEVDVG 178 (189)
Q Consensus 151 eekLtpeeA~~~A~~tgsDif-~~~~~~~ 178 (189)
--|+||.+.|..||..|+ | ...||.-
T Consensus 6 iykI~~~~~W~~A~~~G~--f~~~svd~~ 32 (115)
T COG3502 6 IYKITPRALWAAARAAGS--FEGASVDDA 32 (115)
T ss_pred eeeeCCHHHHHHHHHcCC--cCCCCcccc
Confidence 358999999999999997 4 4444443
No 24
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=21.09 E-value=68 Score=28.84 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHhhcCccc
Q psy3289 154 LTPEEAEKRARKTGSDLF 171 (189)
Q Consensus 154 LtpeeA~~~A~~tgsDif 171 (189)
=+||||..-+++||+|..
T Consensus 155 T~peea~~Fv~~TgvD~L 172 (286)
T PRK12738 155 TDPQEAKRFVELTGVDSL 172 (286)
T ss_pred CCHHHHHHHHHHhCCCEE
Confidence 479999999999999975
No 25
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=20.77 E-value=46 Score=28.64 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=20.9
Q ss_pred HHHHHHHHhhcCccccCccccCCceeec
Q psy3289 157 EEAEKRARKTGSDLFDQEVDVGDRTQIT 184 (189)
Q Consensus 157 eeA~~~A~~tgsDif~~~~~~~~~~~~~ 184 (189)
..|++.|++.|.|+|.. .|++|...+-
T Consensus 129 ~DaLi~Ak~~gfDVFNa-Ld~mdN~~fL 155 (190)
T PF02799_consen 129 NDALILAKNEGFDVFNA-LDLMDNSSFL 155 (190)
T ss_dssp HHHHHHHHHTTESEEEE-ESTTTGGGTT
T ss_pred HHHHHHHHHcCCCEEeh-hhhccchhhH
Confidence 57999999999999975 4666665543
No 26
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=20.57 E-value=36 Score=24.98 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=18.4
Q ss_pred CCCCCCHHHHHHHHHhhcCccc
Q psy3289 150 DNELLTPEEAEKRARKTGSDLF 171 (189)
Q Consensus 150 ~eekLtpeeA~~~A~~tgsDif 171 (189)
+.|-++-+||+..|++.|-|+-
T Consensus 24 ~lGv~~~~eAl~~A~~~~lDLV 45 (76)
T PF05198_consen 24 QLGVMSLREALRLAKEKGLDLV 45 (76)
T ss_dssp EEEEEEHHHHHHHHHHTT-EEE
T ss_pred EeceEEHHHHHHHHHHcCCcEE
Confidence 3467899999999999999986
No 27
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=20.21 E-value=1.2e+02 Score=27.23 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHhhcCccc
Q psy3289 153 LLTPEEAEKRARKTGSDLF 171 (189)
Q Consensus 153 kLtpeeA~~~A~~tgsDif 171 (189)
.=+||||..-+++||+|..
T Consensus 154 ~T~peea~~Fv~~TgvD~L 172 (284)
T PRK09195 154 YTDPAQAREFVEATGIDSL 172 (284)
T ss_pred CCCHHHHHHHHHHHCcCEE
Confidence 4589999999999999975
Done!