Query psy3289
Match_columns 189
No_of_seqs 100 out of 113
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 21:12:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k2t_A LMO2511 protein; lister 28.2 28 0.00096 23.5 1.8 21 151-171 10-30 (57)
2 3a9f_A Cytochrome C; alpha hel 27.5 17 0.0006 26.2 0.7 33 92-124 2-36 (92)
3 3bld_A Queuine tRNA-ribosyltra 27.0 38 0.0013 30.3 3.0 34 138-171 116-152 (386)
4 1c76_A Staphylokinase, SAK; be 22.6 33 0.0011 27.4 1.5 16 89-104 110-125 (136)
5 3ka5_A Ribosome-associated pro 22.3 41 0.0014 23.4 1.8 20 152-171 11-30 (65)
6 3c65_A Uvrabc system protein C 21.9 23 0.00077 29.7 0.4 32 36-67 43-87 (226)
7 2y69_D Cytochrome C oxidase su 19.6 28 0.00095 28.4 0.5 48 17-67 4-51 (169)
8 3lyv_A Ribosome-associated fac 18.5 46 0.0016 23.3 1.4 21 151-171 11-31 (66)
9 1gvf_A Tagatose-bisphosphate a 18.5 56 0.0019 28.0 2.2 18 154-171 155-172 (286)
10 3q94_A Fructose-bisphosphate a 18.3 56 0.0019 28.1 2.2 19 153-171 158-176 (288)
No 1
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=28.22 E-value=28 Score=23.53 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHHHhhcCccc
Q psy3289 151 NELLTPEEAEKRARKTGSDLF 171 (189)
Q Consensus 151 eekLtpeeA~~~A~~tgsDif 171 (189)
-..||.|||+.+-.-.|.|.|
T Consensus 10 ~kpmsveEAv~qmel~gh~F~ 30 (57)
T 3k2t_A 10 LKPMDSEEAVLQMNLLGHSFY 30 (57)
T ss_dssp -CCBCHHHHHHHHHHHTCSEE
T ss_pred CCCCCHHHHHHHHHhCCCcEE
Confidence 356999999999999999987
No 2
>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}
Probab=27.47 E-value=17 Score=26.20 Aligned_cols=33 Identities=21% Similarity=0.098 Sum_probs=13.5
Q ss_pred cCCCCCCcccccccccCCCCCCC--CCCHHHHHHH
Q psy3289 92 VPNLEGFNLKPYVSYRTNEIQTP--EFTAKDLFIE 124 (189)
Q Consensus 92 VPDLtgFKLKPYVSyrtp~v~~~--~~TA~~LF~~ 124 (189)
|++|+.|-=||-.++..|.-... .-.+++||+.
T Consensus 2 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~l~~~ 36 (92)
T 3a9f_A 2 MAELKEFLNKPAATSDVPPAPAGFDFDAAKKLVDV 36 (92)
T ss_dssp -------------CCSSCCCCTTCCHHHHHHHHHH
T ss_pred hhHHHHHHcCcchhccCCCCccccChHhHHHHHHh
Confidence 78999999999999999966543 2347788864
No 3
>3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase, metal-binding, queuosine biosynthesis, tRNA processing; HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A* 1ozq_A* 1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A* 1p0b_A* 1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A* 1q63_A* 1q65_A* 1q66_A* 1k4g_A* 1s38_A* ...
Probab=27.03 E-value=38 Score=30.26 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=23.0
Q ss_pred CCCCCCCCCCCCCCC---CCCHHHHHHHHHhhcCccc
Q psy3289 138 KLDEDGNPLQPSDNE---LLTPEEAEKRARKTGSDLF 171 (189)
Q Consensus 138 ~~d~d~~~~ePs~ee---kLtpeeA~~~A~~tgsDif 171 (189)
+.+++|-.|.-.-.| .||||++..--+..||||.
T Consensus 116 ~i~e~Gv~F~s~~dG~~~~ltpe~~~~iq~~lg~DI~ 152 (386)
T 3bld_A 116 KQSEEGVTFKSHLDGSRHMLSPERSIEIQHLLGSDIV 152 (386)
T ss_dssp -CBTTBCCCCC--------CCHHHHHHHHHHHTCSEE
T ss_pred cCCCCceeeecCCCCceeecCHHHHHHHHHHhCCCEE
Confidence 355666555543333 7999999999999999996
No 4
>1c76_A Staphylokinase, SAK; beta-grAsp family, hydrolase; 2.25A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1c77_A 1c78_A 1c79_A 1ssn_A
Probab=22.63 E-value=33 Score=27.44 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.2
Q ss_pred ceecCCCCCCcccccc
Q psy3289 89 ELIVPNLEGFNLKPYV 104 (189)
Q Consensus 89 e~VVPDLtgFKLKPYV 104 (189)
-|+||||+.++=+|=.
T Consensus 110 Gf~VPd~s~y~K~P~f 125 (136)
T 1c76_A 110 GFVVPDLSEHIKNPGF 125 (136)
T ss_dssp CEECCCCTTTCSSCEE
T ss_pred ceeccchhhhccCCCc
Confidence 4899999999888743
No 5
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=22.28 E-value=41 Score=23.45 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHHHhhcCccc
Q psy3289 152 ELLTPEEAEKRARKTGSDLF 171 (189)
Q Consensus 152 ekLtpeeA~~~A~~tgsDif 171 (189)
..||+|||+..-.-.|.|.|
T Consensus 11 kpMsveEAv~qmel~gh~F~ 30 (65)
T 3ka5_A 11 KPMSEEEAVLEMELLGHNFF 30 (65)
T ss_dssp SCBCHHHHHHHHHHHTCSEE
T ss_pred CCCCHHHHHHHHHhCCCcEE
Confidence 46899999999999999987
No 6
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=21.93 E-value=23 Score=29.71 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=21.8
Q ss_pred ccccceeeeecc-cc-----------chhhhhhhhcC-CCCCCCC
Q psy3289 36 GKKNFRKFNWIN-RG-----------TQQHREEQKLN-PDPRFTP 67 (189)
Q Consensus 36 GkrNFRKf~Lyn-rg-----------~R~f~K~q~~n-p~~~~pi 67 (189)
=|..||||++-+ .| .|-|.++.+.. |+||+-+
T Consensus 43 ~k~~YR~f~i~~~~g~DDya~m~Evl~RR~~r~~~e~~~~PDLil 87 (226)
T 3c65_A 43 AKKEYRKYKVKTVAGPNDYETMREVVRRRYTRVLKEGLPLPDLII 87 (226)
T ss_dssp CGGGCEEEECCCCCTTCHHHHHHHHHHHHHHHHHHHTCCCCSEEE
T ss_pred ChhhCceeecCCCCCCcHHHHHHHHHHHHHhhhhcccCCCCCEEE
Confidence 478999999987 66 44454443333 6788776
No 7
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=19.62 E-value=28 Score=28.43 Aligned_cols=48 Identities=10% Similarity=0.015 Sum_probs=12.9
Q ss_pred cCCcceeecccccccccccccccceeeeeccccchhhhhhhhcCCCCCCCC
Q psy3289 17 DRGGALVSGSGYGSTGASYGKKNFRKFNWINRGTQQHREEQKLNPDPRFTP 67 (189)
Q Consensus 17 ~~~~~~~~~r~ists~~~~GkrNFRKf~Lynrg~R~f~K~q~~np~~~~pi 67 (189)
-|.+.|..-|.||||.+..|+|-.=.+..++ .-.|+. +..+|-|+++.
T Consensus 4 ~~~~~~~~~r~~~~~~~~~g~revv~~~~~~--~p~Y~D-r~d~P~P~irf 51 (169)
T 2y69_D 4 TRVFSLIGRRAISTSVCVRAHGSVVKSEDYA--LPSYVD-RRDYPLPDVAH 51 (169)
T ss_dssp ----------------------CCCCGGGTT--SCCCCC-CTTCCSCSSCS
T ss_pred hhhhhhcccchhhheeeeecCcceeccCcCC--Cceecc-cCCCCCCCCcc
Confidence 3667888999999998878886654444432 333333 45566666665
No 8
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=18.52 E-value=46 Score=23.25 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=18.6
Q ss_pred CCCCCHHHHHHHHHhhcCccc
Q psy3289 151 NELLTPEEAEKRARKTGSDLF 171 (189)
Q Consensus 151 eekLtpeeA~~~A~~tgsDif 171 (189)
-..||+|||+..-.-.|.|.|
T Consensus 11 ~kpMsveEAv~qMel~gh~F~ 31 (66)
T 3lyv_A 11 LKPMDVEEARLQMELLGHDFF 31 (66)
T ss_dssp CCEECHHHHHHHHHTTTCSEE
T ss_pred CCCCCHHHHHHHHHcCCCcEE
Confidence 346899999999999999987
No 9
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=18.46 E-value=56 Score=28.04 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHhhcCccc
Q psy3289 154 LTPEEAEKRARKTGSDLF 171 (189)
Q Consensus 154 LtpeeA~~~A~~tgsDif 171 (189)
=+||||+.-+++||.|..
T Consensus 155 T~Peea~~Fv~~TgvD~L 172 (286)
T 1gvf_A 155 TDPQEAKRFVELTGVDSL 172 (286)
T ss_dssp CCHHHHHHHHHHHCCSEE
T ss_pred CCHHHHHHHHHHHCCCEE
Confidence 469999999999999963
No 10
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=18.28 E-value=56 Score=28.08 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHhhcCccc
Q psy3289 153 LLTPEEAEKRARKTGSDLF 171 (189)
Q Consensus 153 kLtpeeA~~~A~~tgsDif 171 (189)
-=+||||+.-+++||.|..
T Consensus 158 yT~Peea~~Fv~~TgvD~L 176 (288)
T 3q94_A 158 YADPAECKHLVEATGIDCL 176 (288)
T ss_dssp CCCHHHHHHHHHHHCCSEE
T ss_pred CCCHHHHHHHHHHHCCCEE
Confidence 3569999999999999964
Done!