Query psy3289
Match_columns 189
No_of_seqs 100 out of 113
Neff 2.9
Searched_HMMs 13730
Date Fri Aug 16 21:12:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3289.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3289hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rxta2 d.108.1.2 (A:219-455) 48.2 3.7 0.00027 32.3 2.0 30 156-186 140-169 (201)
2 d2q09a2 c.1.9.17 (A:66-366) Pr 37.2 4.9 0.00036 27.0 0.9 27 152-178 274-300 (301)
3 d1o12a2 c.1.9.10 (A:44-331) N- 31.9 7.3 0.00053 26.9 1.1 25 153-178 264-288 (288)
4 d2a2ma1 a.132.1.3 (A:10-240) H 27.9 12 0.00085 28.3 1.8 52 88-143 3-62 (231)
5 d1iyka2 d.108.1.2 (A:225-451) 27.7 11 0.00077 30.2 1.5 30 156-186 152-181 (227)
6 d1tifa_ d.15.8.1 (A:) Translat 27.4 6.8 0.0005 26.3 0.3 21 151-171 24-44 (76)
7 d1r5ya_ c.1.20.1 (A:) Queosine 27.4 12 0.0009 30.7 1.9 23 151-173 122-144 (372)
8 d3be7a2 c.1.9.18 (A:57-359) Zn 25.8 6.6 0.00048 26.3 -0.1 52 125-178 239-303 (303)
9 d1rvga_ c.1.10.2 (A:) Fructose 24.2 23 0.0017 28.6 3.0 17 155-171 154-170 (305)
10 d1c53a_ a.3.1.1 (A:) Cytochrom 24.1 20 0.0015 21.7 2.1 35 129-163 39-73 (79)
11 d1gvfa_ c.1.10.2 (A:) Tagatose 23.4 21 0.0015 28.6 2.5 21 151-171 151-171 (284)
12 d1yrra2 c.1.9.10 (A:54-350) N- 23.1 14 0.001 24.6 1.2 25 154-178 273-297 (297)
13 d2puza2 c.1.9.17 (A:80-380) Im 22.8 13 0.00095 25.3 1.0 27 152-178 274-300 (301)
14 d1iica2 d.108.1.2 (A:219-455) 22.8 15 0.0011 29.4 1.6 30 156-186 163-192 (237)
No 1
>d1rxta2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.22 E-value=3.7 Score=32.29 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhcCccccCccccCCceeeccc
Q psy3289 156 PEEAEKRARKTGSDLFDQEVDVGDRTQITKD 186 (189)
Q Consensus 156 peeA~~~A~~tgsDif~~~~~~~~~~~~~~~ 186 (189)
-..|++.|++-|.|+|.. .|++|...+-++
T Consensus 140 i~Dali~Ak~~~fDVfNa-L~i~dN~~fL~~ 169 (201)
T d1rxta2 140 MSDALVLAKMKGFDVFNA-LDLMENKTFLEK 169 (201)
T ss_dssp HHHHHHHHHHTTCSBCCC-CCCTTHHHHTTT
T ss_pred HHHHHHHHHHcCCcEEEe-cchhcCHHHHHH
Confidence 689999999999999988 888888765443
No 2
>d2q09a2 c.1.9.17 (A:66-366) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples}
Probab=37.15 E-value=4.9 Score=26.96 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHHhhcCccccCccccC
Q psy3289 152 ELLTPEEAEKRARKTGSDLFDQEVDVG 178 (189)
Q Consensus 152 ekLtpeeA~~~A~~tgsDif~~~~~~~ 178 (189)
..|||+||+.-|...|.-++.-+-++|
T Consensus 274 ~glt~~eal~~aT~~~A~~lG~~~~iG 300 (301)
T d2q09a2 274 FGLTPVEAMAGVTRHAARALGEQEQLG 300 (301)
T ss_dssp HCCCHHHHHHHTTHHHHHHTTCTTTSS
T ss_pred cCCCHHHHHHHHHHHHHHHhCcccccC
Confidence 459999999999999988887766666
No 3
>d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Thermotoga maritima [TaxId: 2336]}
Probab=31.92 E-value=7.3 Score=26.91 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHhhcCccccCccccC
Q psy3289 153 LLTPEEAEKRARKTGSDLFDQEVDVG 178 (189)
Q Consensus 153 kLtpeeA~~~A~~tgsDif~~~~~~~ 178 (189)
.|||+||+..|...+..+|.-+ |.|
T Consensus 264 Gls~~eal~~aT~n~A~~lgl~-drG 288 (288)
T d1o12a2 264 GCSITELAKVSSYNSCVELGLD-DRG 288 (288)
T ss_dssp CCCHHHHHHHHTHHHHHHTTCT-TSS
T ss_pred CCCHHHHHHHHHHHHHHHhCCC-CCC
Confidence 4999999999999999998765 443
No 4
>d2a2ma1 a.132.1.3 (A:10-240) Hypothetical protein BT3146 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=27.90 E-value=12 Score=28.28 Aligned_cols=52 Identities=19% Similarity=0.309 Sum_probs=33.1
Q ss_pred CceecC-C-CCCCcccccccccCCCCCCCCCCH------HHHHHHHHHHHHHHHhhhCCCCCCC
Q psy3289 88 PELIVP-N-LEGFNLKPYVSYRTNEIQTPEFTA------KDLFIEVYAEKINKDFEANKLDEDG 143 (189)
Q Consensus 88 Pe~VVP-D-LtgFKLKPYVSyrtp~v~~~~~TA------~~LF~~vyapkI~kDfKeG~~d~d~ 143 (189)
+.++|| | |+| +|. +.+...-...++|. +++++++..-.-.+.+.+|+|+.+.
T Consensus 3 ~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~L~~~~~~i~~~~~~h~Fv~~l~~GtL~~e~ 62 (231)
T d2a2ma1 3 RTFAIPASRLTG-RLT---TLKSDVPAADSLFWKLWNGSLDTAVQVLQTDYFKGIAAGTLDPNA 62 (231)
T ss_dssp CCCCCCGGGCCG-GGT---TCCCSCCCTTSHHHHHHHHTHHHHHHHHTSHHHHHHHHTCCCHHH
T ss_pred ccCCCChHhhcC-ccc---cCCCCCCCCchHHHHHHHHHHHHHHHHHCCHHHHHHHcCCCCHHH
Confidence 567888 3 999 553 33322222344433 4777777777788888999988654
No 5
>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast (Candida albicans) [TaxId: 5476]}
Probab=27.68 E-value=11 Score=30.17 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhcCccccCccccCCceeeccc
Q psy3289 156 PEEAEKRARKTGSDLFDQEVDVGDRTQITKD 186 (189)
Q Consensus 156 peeA~~~A~~tgsDif~~~~~~~~~~~~~~~ 186 (189)
...|++.|++.|.|+|.. .|++|..++-++
T Consensus 152 i~Dali~Ak~~~fDVFNa-L~~mdN~~fLe~ 181 (227)
T d1iyka2 152 ITDALITSKKFGVDVFNC-LTCQDNTYFLKD 181 (227)
T ss_dssp HHHHHHHHGGGTCSEEEE-ESCTTGGGTTTT
T ss_pred HHHHHHHHHHcCCcEEEc-ccccccHHHHHH
Confidence 478999999999999975 678887766554
No 6
>d1tifa_ d.15.8.1 (A:) Translation initiation factor IF3, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=27.45 E-value=6.8 Score=26.28 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=19.1
Q ss_pred CCCCCHHHHHHHHHhhcCccc
Q psy3289 151 NELLTPEEAEKRARKTGSDLF 171 (189)
Q Consensus 151 eekLtpeeA~~~A~~tgsDif 171 (189)
-|-++.+||+..|++-|-|+.
T Consensus 24 lGv~~~~eAl~~A~~~glDLV 44 (76)
T d1tifa_ 24 LGIKSKQEALEIAARRNLDLV 44 (76)
T ss_dssp EEEEEHHHHHHHHHHTTCEEE
T ss_pred eCeecHHHHHHHHHHcCCCEE
Confidence 467999999999999999996
No 7
>d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]}
Probab=27.38 E-value=12 Score=30.67 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=19.0
Q ss_pred CCCCCHHHHHHHHHhhcCccccC
Q psy3289 151 NELLTPEEAEKRARKTGSDLFDQ 173 (189)
Q Consensus 151 eekLtpeeA~~~A~~tgsDif~~ 173 (189)
.-.||||++..-.++.||||...
T Consensus 122 ~~~ltpe~~i~~q~~ig~DI~~~ 144 (372)
T d1r5ya_ 122 RHMLSPERSIEIQHLLGSDIVMA 144 (372)
T ss_dssp --CBCHHHHHHHHHHHTCSEEEC
T ss_pred eeeechHHHHHHHHhhCCceEee
Confidence 44599999999999999999743
No 8
>d3be7a2 c.1.9.18 (A:57-359) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]}
Probab=25.81 E-value=6.6 Score=26.32 Aligned_cols=52 Identities=19% Similarity=0.182 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhCC---CCCCCCCCCCC----------CCCCCCHHHHHHHHHhhcCccccCccccC
Q psy3289 125 VYAEKINKDFEANK---LDEDGNPLQPS----------DNELLTPEEAEKRARKTGSDLFDQEVDVG 178 (189)
Q Consensus 125 vyapkI~kDfKeG~---~d~d~~~~ePs----------~eekLtpeeA~~~A~~tgsDif~~~~~~~ 178 (189)
.-.+.+++..++|- +.-|... -|. .+.-|||+||+..|...|...+.-+ |+|
T Consensus 239 ~~~~~~~~l~~aGv~v~lGTD~~~-~~~~~~~~el~~~~~~Gls~~eaL~~aT~n~A~~lGl~-D~G 303 (303)
T d3be7a2 239 KQRENFMNAHRRGAIITFGTDAGI-FDHGDNAKQFAYMVEWGMTPLEAIQASTIKTATLFGIE-NIG 303 (303)
T ss_dssp HHHHHHHHHHHHTCCEECCCCBTT-BCTTCGGGHHHHHHHTTCCHHHHHHTTTHHHHHHHTCS-SCS
T ss_pred hhHHHHHHHHHCCCeEEEEeCCCC-cccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCc-ccC
Confidence 33456677777774 2233211 111 1345999999999999888888654 555
No 9
>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]}
Probab=24.21 E-value=23 Score=28.60 Aligned_cols=17 Identities=41% Similarity=0.630 Sum_probs=15.9
Q ss_pred CHHHHHHHHHhhcCccc
Q psy3289 155 TPEEAEKRARKTGSDLF 171 (189)
Q Consensus 155 tpeeA~~~A~~tgsDif 171 (189)
+||||+.-+++||.|.+
T Consensus 154 ~peea~~Fv~~TgvD~L 170 (305)
T d1rvga_ 154 NPEEARIFMERTGADYL 170 (305)
T ss_dssp CHHHHHHHHHHHCCSEE
T ss_pred CHHHHHHHHHHhCccHh
Confidence 69999999999999985
No 10
>d1c53a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Desulfovibrio vulgaris, different strains [TaxId: 881]}
Probab=24.15 E-value=20 Score=21.69 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=24.6
Q ss_pred HHHHHhhhCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q psy3289 129 KINKDFEANKLDEDGNPLQPSDNELLTPEEAEKRA 163 (189)
Q Consensus 129 kI~kDfKeG~~d~d~~~~ePs~eekLtpeeA~~~A 163 (189)
...+.|++|.........=|+...+||.||...-|
T Consensus 39 ~~~~~~~~~~~~~~~~~~Mp~~~~~Lsd~ei~~l~ 73 (79)
T d1c53a_ 39 KKLKGYADGSYGGEKKAVMTNLVKRYSDEEMKAMA 73 (79)
T ss_pred HHHHHHHHHHHhccchhccHHHHhcCCHHHHHHHH
Confidence 33456777666555555667778899999988765
No 11
>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]}
Probab=23.36 E-value=21 Score=28.61 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=17.9
Q ss_pred CCCCCHHHHHHHHHhhcCccc
Q psy3289 151 NELLTPEEAEKRARKTGSDLF 171 (189)
Q Consensus 151 eekLtpeeA~~~A~~tgsDif 171 (189)
..--+||||+.-.++||.|.+
T Consensus 151 ~~~T~peea~~Fv~~TgvD~L 171 (284)
T d1gvfa_ 151 AFLTDPQEAKRFVELTGVDSL 171 (284)
T ss_dssp CSSCCHHHHHHHHHHHCCSEE
T ss_pred cccCCHHHHHHHHHHhCCCEE
Confidence 334589999999999999985
No 12
>d1yrra2 c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=23.12 E-value=14 Score=24.63 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHhhcCccccCccccC
Q psy3289 154 LTPEEAEKRARKTGSDLFDQEVDVG 178 (189)
Q Consensus 154 LtpeeA~~~A~~tgsDif~~~~~~~ 178 (189)
|||+||+..|...|..++.-+-++|
T Consensus 273 ls~~~al~~aT~n~A~~LGldd~iG 297 (297)
T d1yrra2 273 IALDEVLRMATLYPARAIGVEKRLG 297 (297)
T ss_dssp CCHHHHHHHHTHHHHHHTTCTTTSS
T ss_pred CCHHHHHHHHHHHHHHHhCCCcCcC
Confidence 8999999999999988887665554
No 13
>d2puza2 c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]}
Probab=22.84 E-value=13 Score=25.34 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHhhcCccccCccccC
Q psy3289 152 ELLTPEEAEKRARKTGSDLFDQEVDVG 178 (189)
Q Consensus 152 ekLtpeeA~~~A~~tgsDif~~~~~~~ 178 (189)
..|||+||+..|...|......+-++|
T Consensus 274 ~gl~~~eal~~aT~~~A~~LGl~~~~G 300 (301)
T d2puza2 274 FRMTVEECLTATTRNAAKALGLLAETG 300 (301)
T ss_dssp HCCCHHHHHHHTTHHHHHHTTCTTTSS
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCcCcC
Confidence 469999999999988888877666665
No 14
>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.83 E-value=15 Score=29.39 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhcCccccCccccCCceeeccc
Q psy3289 156 PEEAEKRARKTGSDLFDQEVDVGDRTQITKD 186 (189)
Q Consensus 156 peeA~~~A~~tgsDif~~~~~~~~~~~~~~~ 186 (189)
...|++.|++.|.|+|.. .|++|...+-++
T Consensus 163 i~Dali~Ak~~~fDVFNa-L~~mdN~~fLe~ 192 (237)
T d1iica2 163 IYDACILAKNANMDVFNA-LTSQDNTLFLDD 192 (237)
T ss_dssp HHHHHHHHHHTTCSEEEE-ESCTTGGGTTTT
T ss_pred HHHHHHHHHHcCCcEEEe-ccccccHHHHHH
Confidence 367999999999999975 677887766544
Done!