RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3289
(189 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 3e-04
Identities = 35/149 (23%), Positives = 46/149 (30%), Gaps = 56/149 (37%)
Query: 21 ALVSG------SGYGSTGASYG-KKNFRKFNWINRGTQQHR---EEQKLNPDPRFTPTYG 70
+LV+G SG + YG RK G Q R E+KL RF
Sbjct: 369 SLVNGAKNLVVSGP--PQSLYGLNLTLRKAK-APSGLDQSRIPFSERKLKFSNRF----- 420
Query: 71 VRKVLQTSDGRPVVETIPELIVPNLEGFN---LKPYVSYRTNEIQTP--EFTAKDLFIEV 125
L PV P F+ L P ++ F AKD+ I V
Sbjct: 421 ----L------PV--ASP---------FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 126 YAEKINKDFEANKLDEDGNPLQPSDNELL 154
Y D DG+ L+ +
Sbjct: 460 Y------DT------FDGSDLRVLSGSIS 476
Score = 26.2 bits (57), Expect = 8.9
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 17/90 (18%)
Query: 97 GFNLKPYVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLD--EDGNPLQPSDNELL 154
GF++ V N T F ++I +++ A + DG E +
Sbjct: 1658 GFSILDIV--INN---PVNLTI--HFGGEKGKRIRENYSAMIFETIVDGKL----KTEKI 1706
Query: 155 TPEEAEKRARKTGSDLFDQEVDVGDRTQIT 184
E E + S F E + TQ T
Sbjct: 1707 FKEINEH----STSYTFRSEKGLLSATQFT 1732
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.003
Identities = 17/99 (17%), Positives = 39/99 (39%), Gaps = 27/99 (27%)
Query: 103 YVSYRTNEIQTPEFTAKDLFIEVYAEKINKDFEANKLDEDGNPLQPSDNELLTPEEAEK- 161
++ + T E Q + KD+ + V+ + +F+ + +D +L+ EE +
Sbjct: 6 HMDFETGEHQ---YQYKDI-LSVFEDAFVDNFDCKDV-QD------MPKSILSKEEIDHI 54
Query: 162 ---RARKTGSD-LFD-------QEVD--VGDRTQITKDY 187
+ +G+ LF + V V + + +Y
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR--INY 91
>1rq6_A 30S ribosomal protein S17E; alpha protein, structural genomics,
protein structure initiative, PSI, NESG; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.4.15.1
Length = 62
Score = 26.1 bits (58), Expect = 1.6
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 117 TAKDLFIEVYAEKINKDFEANKL 139
AK++ IE + K DF+ NK
Sbjct: 12 IAKEM-IETHPGKFTDDFDTNKK 33
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP,
complex, protein binding, hydrolase; 2.30A {Homo
sapiens} SCOP: d.15.1.1
Length = 91
Score = 26.3 bits (58), Expect = 2.9
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 123 IEVYAEKINKDFEANKLDEDGNPLQPSDNELLTPEEAE 160
++ Y E+ + DG P+ +D TP + E
Sbjct: 32 MKAYCERQGLSMRQIRFRFDGQPINETD----TPAQLE 65
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division,
nuclear protein, ubiquitin-like modifier, UBL
conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1
PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B
3uip_B* 1tgz_B* 2bf8_B
Length = 79
Score = 25.5 bits (56), Expect = 3.7
Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 123 IEVYAEKINKDFEANKLDEDGNPLQPSDNELLTPEEAE 160
E Y ++ + + +G + + TP+E
Sbjct: 30 KESYCQRQGVPMNSLRFLFEGQRIADNH----TPKELG 63
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP,
complex, protein binding, hydrolase; 2.60A {Homo
sapiens} SCOP: d.15.1.1
Length = 94
Score = 25.6 bits (56), Expect = 4.6
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 123 IEVYAEKINKDFEANKLDEDGNPLQPSDNELLTPEEAE 160
++ Y E+ + DG P+ +D TP + E
Sbjct: 34 MKAYCERQGLSMRQIRFRFDGQPINETD----TPAQLE 67
>2v1o_A Cytosolic acyl coenzyme A thioester hydrolase; acyl-COA
thioesterase 7, serine esterase, protein structure,
domain duplication, ACOT7, macrophage; HET: COA; 1.78A
{Mus musculus}
Length = 151
Score = 26.2 bits (58), Expect = 5.4
Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 11/54 (20%)
Query: 122 FIEVYAEKINKD-----------FEANKLDEDGNPLQPSDNELLTPEEAEKRAR 164
+ V +E I + L L+ L E+ E+ +
Sbjct: 85 QVHVMSENILTGTKKLTNKATLWYVPLSLKNVDKVLEVPPIVYLRQEQEEEGRK 138
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 26.4 bits (59), Expect = 6.2
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 157 EEAEKRARKTGSDLFDQEVDVGDRTQI 183
EE + + G+ + VD +R I
Sbjct: 69 EETAAKCKGLGAKVHTFVVDCSNREDI 95
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation,
inhibitor, TETR intermediate, ligase, nucleus,
phosphoprotein; HET: VMX; 2.61A {Homo sapiens}
Length = 115
Score = 25.3 bits (55), Expect = 7.0
Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 123 IEVYAEKINKDFEANKLDEDGNPLQPSDNELLTPEEAE 160
E Y ++ + + +G + + TP+E
Sbjct: 67 KESYCQRQGVPMNSLRFLFEGQRIADNH----TPKELG 100
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.9 bits (56), Expect = 7.2
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 110 EIQTPEFTAKDL--FIEVYAEKINKDFEANKLDE 141
E + E KDL + + +E++ K+ N++ +
Sbjct: 109 EQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
>3u5c_R RP51A, 40S ribosomal protein S17-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_Q 3o30_K 3o2z_K 3u5g_R
Length = 136
Score = 25.4 bits (55), Expect = 8.1
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 117 TAKDLFIEVYAEKINKDFEANK 138
+K L IE Y K+ DF+ NK
Sbjct: 12 ASKAL-IERYYPKLTLDFQTNK 32
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier,
signaling protein; NMR {Trypanosoma brucei}
Length = 110
Score = 25.3 bits (55), Expect = 8.1
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 123 IEVYAEKINKDFEANKLDEDGNPLQPSDNELLTPEEAE 160
I+ Y +K + + DG P+ + TPEE
Sbjct: 53 IDTYCKKQGISRNSVRFLFDGTPIDETK----TPEELG 86
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP:
d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Length = 93
Score = 24.8 bits (54), Expect = 8.2
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 123 IEVYAEKINKDFEANKLDEDGNPLQPSDNELLTPEEAE 160
++ Y E+ + DG P+ +D TP + E
Sbjct: 44 MKAYCERQGLSMRQIRFRFDGQPINETD----TPAQLE 77
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule,
structural genomics, sentrin2, NPPFSA; NMR {Homo
sapiens} SCOP: d.15.1.1
Length = 104
Score = 25.2 bits (55), Expect = 8.6
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 123 IEVYAEKINKDFEANKLDEDGNPLQPSDNELLTPEEAE 160
++ Y E+ + DG P+ +D TP + E
Sbjct: 51 MKAYCERQGLSMRQIRFRFDGQPINETD----TPAQLE 84
>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 141
Score = 25.4 bits (55), Expect = 8.8
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 117 TAKDLFIEVYAEKINKDFEANK 138
T++ + IE Y ++ DF NK
Sbjct: 12 TSRQV-IEKYYSRMTLDFHTNK 32
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF,
tethering complex, RAB activation, GU nucleotide
exchange factor; HET: PLM; 3.70A {Saccharomyces
cerevisiae}
Length = 159
Score = 25.7 bits (56), Expect = 8.8
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 11/58 (18%)
Query: 119 KDLFIEVYAEKINKDFEANKLDEDGNPLQPSDNELLTPEEAEKRARKTGSDLFDQEVD 176
+ ++ +Y + ++ N L P D E + RK + F ++
Sbjct: 104 QYIYSHIYVKYVSN-----------NLLSPYDFAENENEMRGQGTRKITNRNFISVLE 150
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two
helices, protein transport; 1.20A {Homo sapiens} SCOP:
d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Length = 72
Score = 24.4 bits (53), Expect = 9.4
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 123 IEVYAEKINKDFEANKLDEDGNPLQPSDNELLTPEEAE 160
++ Y E+ + DG P+ +D TP + E
Sbjct: 28 MKAYCERQGLSMRQIRFRFDGQPINETD----TPAQLE 61
>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_V
Length = 130
Score = 25.3 bits (55), Expect = 9.7
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 117 TAKDLFIEVYAEKINKDFEANK 138
AK L IE Y K+ DF NK
Sbjct: 12 AAKSL-IEHYYSKLTNDFHFNK 32
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.136 0.393
Gapped
Lambda K H
0.267 0.0465 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,014,079
Number of extensions: 179120
Number of successful extensions: 357
Number of sequences better than 10.0: 1
Number of HSP's gapped: 357
Number of HSP's successfully gapped: 39
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.2 bits)