RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3289
         (189 letters)



>d1vf5c2 b.84.2.2 (C:170-231) Cytochrome f, small domain
          {Mastigocladus laminosus [TaxId: 83541]}
          Length = 62

 Score = 27.4 bits (61), Expect = 0.22
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 58 KLNPDPRFTPTYGVRKVLQTSDGRPVVETIP---ELIV 92
          K+  +         +  +QT  G+ VV+TIP   ELIV
Sbjct: 13 KIAKEEDEYGNVKYQVSIQTDSGKTVVDTIPAGPELIV 50


>d1rq6a_ a.4.15.1 (A:) ribosomal protein S17e {Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 62

 Score = 25.3 bits (56), Expect = 1.1
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)

Query: 117 TAKDLFIEVYAEKINKDFEANK 138
            AK++ IE +  K   DF+ NK
Sbjct: 12  IAKEM-IETHPGKFTDDFDTNK 32


>d1hcza2 b.84.2.2 (A:168-230) Cytochrome f, small domain {Turnip
          (Brassica rapa) [TaxId: 3711]}
          Length = 63

 Score = 25.4 bits (56), Expect = 1.1
 Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 3/22 (13%)

Query: 74 VLQTSDGRPVVETIP---ELIV 92
          ++  S+ R V++ IP   EL+V
Sbjct: 27 IVDASNERQVIDIIPRGLELLV 48


>d1tu2b2 b.84.2.2 (B:170-235) Cytochrome f, small domain {Anabaena
          sp., strain PCC 7120 [TaxId: 1167]}
          Length = 66

 Score = 25.1 bits (55), Expect = 1.9
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 3/28 (10%)

Query: 68 TYGVRKVLQTSDGRPVVETIP---ELIV 92
          +      ++T  G  V +TIP   ELIV
Sbjct: 23 SVKYLVDIKTESGEVVSDTIPAGPELIV 50


>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 365

 Score = 26.3 bits (57), Expect = 2.5
 Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 126 YAEKINKDFEANK----LDEDGNPLQPSDNELLTPEEAEK 161
           +AE++ K  E       L+E+G  +       L+ E+ ++
Sbjct: 6   FAEQLEKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKE 45


>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach
           (Spinacia oleracea) [TaxId: 3562]}
          Length = 112

 Score = 25.1 bits (55), Expect = 3.3
 Identities = 7/27 (25%), Positives = 16/27 (59%)

Query: 154 LTPEEAEKRARKTGSDLFDQEVDVGDR 180
           L P EA +RA+ + S++ + +  +  +
Sbjct: 6   LPPTEAAQRAKVSASEILNVKQFIDRK 32


>d2d32a1 d.128.1.4 (A:1-518) Gamma-glutamylcysteine synthetase GshA
           {Escherichia coli [TaxId: 562]}
          Length = 518

 Score = 26.1 bits (57), Expect = 3.5
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 12/73 (16%)

Query: 98  FNLKPYVSYRTNEIQTPEFTAKDLFI-----EVYAEKI-------NKDFEANKLDEDGNP 145
           + L    S R +++     +  +L I       Y   +       ++++    +++DG  
Sbjct: 226 YYLPYATSLRLSDLGYTNKSQSNLGITFNDLYEYVAGLKQAIKTPSEEYAKIGIEKDGKR 285

Query: 146 LQPSDNELLTPEE 158
           LQ + N L    E
Sbjct: 286 LQINSNVLQIENE 298


>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid
           dehydrogenase, PP module {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 395

 Score = 24.8 bits (53), Expect = 7.9
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 139 LDEDGNPLQPSDNELLTPEEAEK 161
           +D  G  + PS++  L  E+  K
Sbjct: 32  MDRQGQIINPSEDPHLPKEKVLK 54


>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 322

 Score = 24.4 bits (53), Expect = 9.6
 Identities = 6/46 (13%), Positives = 14/46 (30%), Gaps = 7/46 (15%)

Query: 95  LEGFNLKPYVSYRTNEI---QTPE----FTAKDLFIEVYAEKINKD 133
            E +  KP + +    +           +   +  +E Y +    D
Sbjct: 193 FEEYTKKPKLDHNQEIVKYWYNYHIERYWNTPEAKLEFYRKFGQVD 238


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0573    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 739,681
Number of extensions: 35327
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 14
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.4 bits)