BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3290
(147 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SMS|A Chain A, Human Pantothenate Kinase 3 In Complex With A Pantothenate
Analog
Length = 382
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 103/177 (58%), Gaps = 33/177 (18%)
Query: 1 MPWFGMDIGGTLSKLVYFEPKDITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQV 60
PWFGMDIGGTL KL YFEP DIT +E E+E+LK+IRKYLT N AYGSTG RD HL++
Sbjct: 21 FPWFGMDIGGTLVKLSYFEPIDITAEEEQEEVESLKSIRKYLTSNVAYGSTGIRDVHLEL 80
Query: 61 LYTTL-----TLLCIELISDDTVVDFIRV-----IMRIQEV------------------- 91
TL L I + D + FI++ +Q V
Sbjct: 81 KDLTLFGRRGNLHFIRFPTQD-LPTFIQMGRDKNFSTLQTVLCATGGGAYKFEKDFRTIG 139
Query: 92 NMKLEKCDELDCLIRGMLFIEA---NYPLECYYWANSTVEDKCTKVQYDFTNPYPFI 145
N+ L K DELDCL++G+L+I++ N ECYY+AN++ ++C K+ ++ +PYP +
Sbjct: 140 NLHLHKLDELDCLVKGLLYIDSVSFNGQAECYYFANASEPERCQKMPFNLDDPYPLL 196
>pdb|3MK6|A Chain A, Substrate And Inhibitor Binding To Pank
pdb|3MK6|B Chain B, Substrate And Inhibitor Binding To Pank
pdb|3MK6|C Chain C, Substrate And Inhibitor Binding To Pank
pdb|3MK6|D Chain D, Substrate And Inhibitor Binding To Pank
Length = 376
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 103/176 (58%), Gaps = 33/176 (18%)
Query: 2 PWFGMDIGGTLSKLVYFEPKDITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQVL 61
PWFGMDIGGTL KL YFEP DIT +E E+E+LK+IRKYLT N AYGSTG RD HL++
Sbjct: 20 PWFGMDIGGTLVKLSYFEPIDITAEEEQEEVESLKSIRKYLTSNVAYGSTGIRDVHLELK 79
Query: 62 YTTL-----TLLCIELISDDTVVDFIRV-----IMRIQEV-------------------N 92
TL L I + D + FI++ +Q V N
Sbjct: 80 DLTLFGRRGNLHFIRFPTQD-LPTFIQMGRDKNFSTLQTVLCATGGGAYKFEKDFRTIGN 138
Query: 93 MKLEKCDELDCLIRGMLFIEA---NYPLECYYWANSTVEDKCTKVQYDFTNPYPFI 145
+ L K DELDCL++G+L+I++ N ECYY+AN++ ++C K+ ++ +PYP +
Sbjct: 139 LHLHKLDELDCLVKGLLYIDSVSFNGQAECYYFANASEPERCQKMPFNLDDPYPLL 194
>pdb|2I7P|A Chain A, Crystal Structure Of Human Pank3 In Complex With Accoa
pdb|2I7P|B Chain B, Crystal Structure Of Human Pank3 In Complex With Accoa
pdb|2I7P|C Chain C, Crystal Structure Of Human Pank3 In Complex With Accoa
pdb|2I7P|D Chain D, Crystal Structure Of Human Pank3 In Complex With Accoa
Length = 362
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 103/176 (58%), Gaps = 33/176 (18%)
Query: 2 PWFGMDIGGTLSKLVYFEPKDITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQVL 61
PWFGMDIGGTL KL YFEP DIT +E E+E+LK+IRKYLT N AYGSTG RD HL++
Sbjct: 6 PWFGMDIGGTLVKLSYFEPIDITAEEEQEEVESLKSIRKYLTSNVAYGSTGIRDVHLELK 65
Query: 62 YTTL-----TLLCIELISDDTVVDFIRV-----IMRIQEV-------------------N 92
TL L I + D + FI++ +Q V N
Sbjct: 66 DLTLFGRRGNLHFIRFPTQD-LPTFIQMGRDKNFSTLQTVLCATGGGAYKFEKDFRTIGN 124
Query: 93 MKLEKCDELDCLIRGMLFIEA---NYPLECYYWANSTVEDKCTKVQYDFTNPYPFI 145
+ L K DELDCL++G+L+I++ N ECYY+AN++ ++C K+ ++ +PYP +
Sbjct: 125 LHLHKLDELDCLVKGLLYIDSVSFNGQAECYYFANASEPERCQKMPFNLDDPYPLL 180
>pdb|3SMP|A Chain A, Monoclinic Crystal Structure Of Human Pantothenate Kinase
1 Alpha
pdb|3SMP|B Chain B, Monoclinic Crystal Structure Of Human Pantothenate Kinase
1 Alpha
Length = 386
Score = 115 bits (289), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 93/180 (51%), Gaps = 41/180 (22%)
Query: 2 PWFGMDIGGTLSKLVYFEPKDITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQVL 61
PWFGMDIGGTL KLVYFEPKDIT +E E+E LK+IRKYLT N AYG TG RD HL++
Sbjct: 26 PWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLELK 85
Query: 62 YTTL---------------------------------TLLCIELISDDTVVDFIRVIMRI 88
T+ T LC + R+I +
Sbjct: 86 NLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAFKFEEDFRMIADL 145
Query: 89 QEVNMKLEKCDELDCLIRGMLFIEA---NYPLECYYWANSTVEDKCTKVQYDFTNPYPFI 145
Q L K DELDCLI+G+L++++ N ECYY+ N T + C K Y NPYP +
Sbjct: 146 Q-----LHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLDNPYPML 200
>pdb|2I7N|A Chain A, Crystal Structure Of Human Pank1 Alpha: The Catalytic Core
Domain In Complex With Accoa
pdb|2I7N|B Chain B, Crystal Structure Of Human Pank1 Alpha: The Catalytic Core
Domain In Complex With Accoa
Length = 360
Score = 115 bits (289), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 93/180 (51%), Gaps = 41/180 (22%)
Query: 2 PWFGMDIGGTLSKLVYFEPKDITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQVL 61
PWFGMDIGGTL KLVYFEPKDIT +E E+E LK+IRKYLT N AYG TG RD HL++
Sbjct: 4 PWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLELK 63
Query: 62 YTTL---------------------------------TLLCIELISDDTVVDFIRVIMRI 88
T+ T LC + R+I +
Sbjct: 64 NLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAFKFEEDFRMIADL 123
Query: 89 QEVNMKLEKCDELDCLIRGMLFIEA---NYPLECYYWANSTVEDKCTKVQYDFTNPYPFI 145
Q L K DELDCLI+G+L++++ N ECYY+ N T + C K Y NPYP +
Sbjct: 124 Q-----LHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLDNPYPML 178
>pdb|3H0L|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 26.9 bits (58), Expect = 3.9, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 6 MDIGGTLSKLVYFEPKDITPDEANSEIETLKNIRKYLTKNKA 47
++ GT + EP TP+EA +E L+NI +Y +KA
Sbjct: 144 LNRAGTPLMEIVTEPDIRTPEEARLFLEKLRNIMRYAGVSKA 185
>pdb|2ZMF|A Chain A, Crystal Structure Of The C-Terminal Gaf Domain Of Human
Phosphodiesterase 10a
pdb|2ZMF|B Chain B, Crystal Structure Of The C-Terminal Gaf Domain Of Human
Phosphodiesterase 10a
Length = 189
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 53 HRDTHLQVLYTTLTLLCIELISDDTVVDFIRVIMRIQEVNMKLEKCDE 100
+R+ L YTT +LC ++S +V+ ++ + +I K DE
Sbjct: 115 NREVDLYTGYTTRNILCXPIVSRGSVIGVVQXVNKIS--GSAFSKTDE 160
>pdb|3KRU|A Chain A, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
pdb|3KRU|B Chain B, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
pdb|3KRU|C Chain C, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
pdb|3KRU|D Chain D, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
Length = 343
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 70 IELISDDTVVDFIRVIMRIQEVNMKLEKCDELDCLIRGMLFIEAN-YPLECYYWANSTVE 128
+ + +DD + I + M ++ +NM +K D +D G+L ++ N YP +A T++
Sbjct: 215 VRVSADDYMEGGINIDMMVEYINMIKDKVDLIDVSSGGLLNVDINLYPGYQVKYA-ETIK 273
Query: 129 DKCT 132
+C
Sbjct: 274 KRCN 277
>pdb|3KRZ|A Chain A, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
pdb|3KRZ|B Chain B, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
pdb|3KRZ|C Chain C, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
pdb|3KRZ|D Chain D, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
Length = 337
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 70 IELISDDTVVDFIRVIMRIQEVNMKLEKCDELDCLIRGMLFIEAN-YPLECYYWANSTVE 128
+ + +DD + I + M ++ +NM +K D +D G+L ++ N YP +A T++
Sbjct: 215 VRVSADDYMEGGINIDMMVEYINMIKDKVDLIDVSSGGLLNVDINLYPGYQVKYA-ETIK 273
Query: 129 DKCT 132
+C
Sbjct: 274 KRCN 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,490,739
Number of Sequences: 62578
Number of extensions: 161764
Number of successful extensions: 400
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 380
Number of HSP's gapped (non-prelim): 15
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)