Query psy3290
Match_columns 147
No_of_seqs 151 out of 215
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 21:14:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2201|consensus 100.0 4.1E-40 8.9E-45 280.4 10.5 126 1-146 22-178 (371)
2 PF03630 Fumble: Fumble ; Int 100.0 9.1E-37 2E-41 261.4 12.5 130 3-146 2-160 (341)
3 PLN02920 pantothenate kinase 1 100.0 7.7E-30 1.7E-34 222.0 11.1 116 2-146 19-169 (398)
4 PTZ00297 pantothenate kinase; 100.0 4.8E-29 1E-33 243.2 11.7 130 4-146 1042-1218(1452)
5 PLN02902 pantothenate kinase 99.9 4.6E-28 1E-32 225.8 9.6 128 2-146 54-218 (876)
6 COG5146 PanK Pantothenate kina 99.8 4.1E-21 9E-26 160.0 5.6 101 3-146 20-149 (342)
7 TIGR00555 panK_eukar pantothen 99.8 2.1E-19 4.6E-24 150.8 7.5 72 2-117 1-97 (279)
8 PRK13317 pantothenate kinase; 99.0 9.8E-10 2.1E-14 92.1 8.2 69 3-115 4-91 (277)
9 smart00732 YqgFc Likely ribonu 91.3 0.21 4.4E-06 34.2 2.8 21 1-21 1-21 (99)
10 TIGR03286 methan_mark_15 putat 90.3 1.2 2.6E-05 39.8 7.4 26 98-123 222-247 (404)
11 PF05378 Hydant_A_N: Hydantoin 87.2 0.49 1.1E-05 37.1 2.5 18 4-21 2-19 (176)
12 PRK13318 pantothenate kinase; 86.3 0.62 1.3E-05 38.1 2.7 17 3-19 2-18 (258)
13 PRK13321 pantothenate kinase; 85.6 0.75 1.6E-05 37.8 2.8 18 3-20 2-19 (256)
14 PRK14101 bifunctional glucokin 79.7 1.1 2.3E-05 41.5 1.7 96 2-111 19-126 (638)
15 PRK00292 glk glucokinase; Prov 79.5 1.6 3.6E-05 36.3 2.7 26 86-111 85-111 (316)
16 PRK12408 glucokinase; Provisio 74.8 1.7 3.6E-05 37.1 1.5 26 86-111 103-129 (336)
17 PTZ00288 glucokinase 1; Provis 73.1 7.4 0.00016 34.6 5.2 19 3-21 28-46 (405)
18 PF01869 BcrAD_BadFG: BadF/Bad 68.0 4.3 9.3E-05 32.9 2.4 18 4-21 1-18 (271)
19 TIGR00749 glk glucokinase, pro 67.8 4.2 9.1E-05 34.1 2.3 23 86-108 84-107 (316)
20 PF04260 DUF436: Protein of un 64.2 3.7 8.1E-05 32.8 1.3 11 3-13 122-132 (172)
21 PF00370 FGGY_N: FGGY family o 63.4 6 0.00013 31.5 2.4 18 3-20 2-19 (245)
22 PF11104 PilM_2: Type IV pilus 61.4 99 0.0022 26.1 11.2 108 5-117 1-175 (340)
23 TIGR01314 gntK_FGGY gluconate 59.2 7.8 0.00017 34.6 2.5 18 3-20 2-19 (505)
24 PF00349 Hexokinase_1: Hexokin 58.0 9.8 0.00021 30.7 2.7 20 3-22 65-84 (206)
25 TIGR00241 CoA_E_activ CoA-subs 57.1 7.9 0.00017 31.3 2.1 17 3-19 2-18 (248)
26 COG0145 HyuA N-methylhydantoin 56.6 9.5 0.00021 36.3 2.7 20 3-22 4-23 (674)
27 PLN02666 5-oxoprolinase 55.7 9.1 0.0002 38.9 2.6 19 3-21 11-29 (1275)
28 TIGR01440 conserved hypothetic 55.2 4.3 9.4E-05 32.5 0.2 13 3-15 122-134 (172)
29 PRK13320 pantothenate kinase; 55.0 11 0.00024 30.9 2.7 18 3-20 4-21 (244)
30 TIGR02259 benz_CoA_red_A benzo 54.6 7.5 0.00016 35.2 1.7 18 3-20 4-21 (432)
31 PRK13331 pantothenate kinase; 52.4 14 0.0003 30.9 2.8 20 1-20 7-26 (251)
32 COG3569 Topoisomerase IB [DNA 51.7 12 0.00026 33.0 2.3 33 40-72 155-187 (354)
33 TIGR01315 5C_CHO_kinase FGGY-f 50.6 13 0.00029 33.6 2.7 18 3-20 2-19 (541)
34 PRK13690 hypothetical protein; 50.0 5.8 0.00012 32.1 0.2 12 3-14 129-140 (184)
35 COG1940 NagC Transcriptional r 50.0 15 0.00032 30.3 2.7 32 82-113 96-128 (314)
36 TIGR01311 glycerol_kin glycero 49.5 14 0.0003 32.9 2.5 18 3-20 3-20 (493)
37 PF14450 FtsA: Cell division p 47.2 19 0.00042 26.0 2.6 17 4-20 2-18 (120)
38 PRK05082 N-acetylmannosamine k 45.7 18 0.00039 29.6 2.4 26 86-111 91-116 (291)
39 PRK13927 rod shape-determining 45.0 18 0.00038 30.2 2.4 16 3-19 7-22 (334)
40 TIGR00671 baf pantothenate kin 44.3 21 0.00046 29.3 2.7 18 3-20 1-18 (243)
41 PRK00047 glpK glycerol kinase; 43.8 19 0.00041 32.1 2.5 18 3-20 7-24 (498)
42 cd01395 HMT_MBD Methyl-CpG bin 43.0 27 0.00058 23.2 2.5 33 6-45 17-49 (60)
43 PHA03101 DNA topoisomerase typ 41.9 26 0.00056 30.5 2.9 31 40-70 136-166 (314)
44 PRK13311 N-acetyl-D-glucosamin 41.6 24 0.00051 28.5 2.5 27 86-112 91-117 (256)
45 PRK13930 rod shape-determining 41.2 20 0.00043 29.8 2.1 16 3-18 10-25 (335)
46 TIGR03192 benz_CoA_bzdQ benzoy 40.3 22 0.00047 30.6 2.2 17 3-19 34-50 (293)
47 cd00659 Topo_IB_C DNA topoisom 38.6 25 0.00053 28.8 2.2 30 40-69 61-90 (218)
48 TIGR02261 benz_CoA_red_D benzo 38.5 21 0.00045 30.2 1.8 17 3-19 3-19 (262)
49 PF03309 Pan_kinase: Type III 36.4 37 0.00081 26.7 2.9 18 3-20 1-18 (206)
50 smart00842 FtsA Cell division 35.9 29 0.00063 26.7 2.2 17 4-20 2-18 (187)
51 COG1070 XylB Sugar (pentulose 35.5 32 0.00069 30.9 2.6 19 3-21 6-24 (502)
52 TIGR03123 one_C_unchar_1 proba 34.9 24 0.00053 30.5 1.7 16 4-19 131-146 (318)
53 COG1521 Pantothenate kinase ty 34.9 35 0.00075 28.7 2.6 18 2-19 1-18 (251)
54 PRK15027 xylulokinase; Provisi 34.7 33 0.00073 30.4 2.6 18 3-20 2-19 (484)
55 PTZ00009 heat shock 70 kDa pro 34.2 35 0.00075 31.9 2.7 20 1-20 4-23 (653)
56 TIGR02529 EutJ ethanolamine ut 34.1 19 0.0004 29.3 0.8 18 5-22 1-18 (239)
57 PF00012 HSP70: Hsp70 protein; 33.6 39 0.00085 30.3 2.9 18 4-21 2-19 (602)
58 PF01968 Hydantoinase_A: Hydan 33.4 31 0.00068 28.9 2.1 18 3-20 79-96 (290)
59 PRK13324 pantothenate kinase; 33.4 40 0.00088 28.1 2.7 18 3-20 2-19 (258)
60 PRK13310 N-acetyl-D-glucosamin 33.2 31 0.00068 28.3 2.1 26 86-111 91-116 (303)
61 PF06577 DUF1134: Protein of u 31.9 37 0.00079 27.0 2.1 19 2-20 76-97 (160)
62 PRK09698 D-allose kinase; Prov 31.6 42 0.00091 27.5 2.5 22 86-107 99-120 (302)
63 TIGR02350 prok_dnaK chaperone 31.3 43 0.00092 30.6 2.7 19 2-20 1-19 (595)
64 PF02685 Glucokinase: Glucokin 31.1 51 0.0011 28.3 3.0 27 86-112 85-112 (316)
65 PRK09557 fructokinase; Reviewe 30.1 46 0.00099 27.3 2.5 26 86-111 91-116 (301)
66 PLN02295 glycerol kinase 30.0 43 0.00094 30.0 2.5 17 4-20 3-19 (512)
67 PF06706 CTV_P6: Citrus triste 29.7 26 0.00055 22.4 0.7 9 101-109 1-9 (51)
68 PRK10331 L-fuculokinase; Provi 29.5 45 0.00098 29.4 2.5 18 3-20 4-21 (470)
69 PF02541 Ppx-GppA: Ppx/GppA ph 29.5 55 0.0012 26.8 2.9 19 2-20 113-131 (285)
70 PRK00290 dnaK molecular chaper 29.2 47 0.001 30.7 2.7 19 2-20 3-21 (627)
71 PHA02744 hypothetical protein; 28.4 50 0.0011 23.7 2.2 16 5-20 47-62 (88)
72 CHL00094 dnaK heat shock prote 28.4 51 0.0011 30.6 2.7 19 2-20 3-21 (621)
73 PTZ00294 glycerol kinase-like 28.4 48 0.001 29.6 2.5 18 3-20 4-21 (504)
74 TIGR02628 fuculo_kin_coli L-fu 28.1 50 0.0011 29.2 2.6 18 4-21 4-21 (465)
75 PRK10939 autoinducer-2 (AI-2) 28.0 49 0.0011 29.6 2.5 19 3-21 5-23 (520)
76 PRK04123 ribulokinase; Provisi 27.9 52 0.0011 29.7 2.7 18 3-20 5-22 (548)
77 PRK13322 pantothenate kinase; 27.5 54 0.0012 26.9 2.5 18 3-20 2-19 (246)
78 PRK13326 pantothenate kinase; 26.7 63 0.0014 27.0 2.8 18 3-20 8-25 (262)
79 PRK15080 ethanolamine utilizat 26.1 50 0.0011 27.2 2.1 19 3-21 26-44 (267)
80 TIGR00744 ROK_glcA_fam ROK fam 26.0 57 0.0012 26.8 2.4 27 86-112 92-118 (318)
81 PF06277 EutA: Ethanolamine ut 25.6 48 0.001 30.5 2.0 17 3-19 5-21 (473)
82 COG0837 Glk Glucokinase [Carbo 24.8 87 0.0019 27.4 3.4 44 2-45 7-55 (320)
83 PF06406 StbA: StbA protein; 24.5 70 0.0015 27.0 2.7 18 4-21 3-20 (318)
84 smart00391 MBD Methyl-CpG bind 24.1 55 0.0012 22.4 1.7 26 15-47 30-55 (77)
85 TIGR01174 ftsA cell division p 24.0 58 0.0012 27.8 2.1 17 4-20 3-19 (371)
86 PF00480 ROK: ROK family; Int 24.0 75 0.0016 23.6 2.6 28 86-113 86-113 (179)
87 cd00122 MBD MeCP2, MBD1, MBD2, 22.9 62 0.0013 20.9 1.7 25 15-46 27-51 (62)
88 COG1548 Predicted transcriptio 22.8 35 0.00077 29.6 0.6 17 1-17 3-19 (330)
89 TIGR01234 L-ribulokinase L-rib 22.7 75 0.0016 28.7 2.7 17 3-19 3-19 (536)
90 PRK10719 eutA reactivating fac 22.5 73 0.0016 29.4 2.5 17 3-19 8-24 (475)
91 COG0145 HyuA N-methylhydantoin 21.5 55 0.0012 31.2 1.7 17 3-19 280-296 (674)
92 PTZ00107 hexokinase; Provision 21.3 83 0.0018 28.6 2.7 20 3-22 76-95 (464)
93 COG1799 Uncharacterized protei 21.3 1.9E+02 0.0042 23.0 4.4 51 8-85 69-119 (167)
94 TIGR01656 Histidinol-ppas hist 20.6 60 0.0013 23.8 1.4 13 2-14 1-13 (147)
95 TIGR03123 one_C_unchar_1 proba 20.2 61 0.0013 28.1 1.5 17 4-20 1-17 (318)
No 1
>KOG2201|consensus
Probab=100.00 E-value=4.1e-40 Score=280.41 Aligned_cols=126 Identities=40% Similarity=0.740 Sum_probs=117.1
Q ss_pred CCceEEeecCceeEEEEeeeCCCCCCchhhHHHHHHHHHHHhhhcccCCCCCcccccceeecceeeEEEEEecchhhHHH
Q psy3290 1 MPWFGMDIGGTLSKLVYFEPKDITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQVLYTTLTLLCIELISDDTVVD 80 (147)
Q Consensus 1 ~p~faiDIGGTL~KlVYf~~~~~~~~~~~~e~~~l~~i~~~l~~n~~yg~~g~rd~~le~~~~t~~LhFikFeT~~~i~~ 80 (147)
+|||||||||||+|||||+|.+++++++++++ ++|.+||+++++| .||||++|+|.+ |+.
T Consensus 22 ~~~~~~DigGtl~KlvY~s~~~~~~~~~~~~~----------~~n~~~~~~~~~~---------~rl~~~~~e~~~-~~~ 81 (371)
T KOG2201|consen 22 ISHFAMDIGGTLVKLVYFSPVDISPEEEESEV----------ILNGAYGKTGYRD---------GRLHFINFETFK-IDG 81 (371)
T ss_pred CceEEEecCCcEEEEEEEecCCCCcchhhhhc----------ccccccccccccc---------cEEEEEEeeecC-ccc
Confidence 58999999999999999999998887654432 6899999999887 589999999999 999
Q ss_pred HHHHH-------------------------------HHHHHcCCceeeechhhhhhhhhhhhhhhCCCceEEeeCCCCcc
Q psy3290 81 FIRVI-------------------------------MRIQEVNMKLEKCDELDCLIRGMLFIEANYPLECYYWANSTVED 129 (147)
Q Consensus 81 fi~~~-------------------------------~f~~~lgv~l~k~DEMecLI~Gl~fll~~i~~E~ft~~~~~~~~ 129 (147)
||+|| +|+++|+|+++|+|||+|||+|+||+++++|+|||||+++.+++
T Consensus 82 ~L~Fi~~~~~~~~~k~~~~~~~~i~aTGGGA~Kf~d~~~~~l~v~l~k~Dem~~LI~G~~f~l~~i~~E~fty~~~~~~~ 161 (371)
T KOG2201|consen 82 CLNFIRFNITDHPVKNFSKLTTVICATGGGAYKFEDLFREILDVKLDKEDEMDCLIKGLNFLLSNIPAECFTYENDEDEE 161 (371)
T ss_pred hhHHhhcchhhccccccccceeEEEEeCCcceeHHHHHHHHhCceEeehhHHHHHHhhhHHHHhcCccceEEEecCCCcc
Confidence 99999 88999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCCCccccC
Q psy3290 130 KCTKVQYDFTNPYPFIY 146 (147)
Q Consensus 130 ~~~~~~~~~~~~YPyLL 146 (147)
.+++.+++.++||||||
T Consensus 162 ~~~~~~~~~d~~yPyLL 178 (371)
T KOG2201|consen 162 VEFQTNFCLDSPYPYLL 178 (371)
T ss_pred eecccCCccCCCCceEE
Confidence 99999999999999998
No 2
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=100.00 E-value=9.1e-37 Score=261.44 Aligned_cols=130 Identities=32% Similarity=0.607 Sum_probs=101.3
Q ss_pred ceEEeecCceeEEEEeeeCCCCCCchhhHHHHHHHHHHHhhhcccCCCCCcccccceeecceeeEEEEEecchhhHHHHH
Q psy3290 3 WFGMDIGGTLSKLVYFEPKDITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQVLYTTLTLLCIELISDDTVVDFI 82 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~~~~~~~~~~~e~~~l~~i~~~l~~n~~yg~~g~rd~~le~~~~t~~LhFikFeT~~~i~~fi 82 (147)
||||||||||+|||||+|.+.+.++.+++..+++++++... ..+......+|||++|||++ |++||
T Consensus 2 ~faiDIGGTL~KlVYfs~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~g~L~Fi~FeT~~-ie~~i 67 (341)
T PF03630_consen 2 HFAIDIGGTLVKLVYFSPVDSSPDNQDKEDDSLRSLRREMH-------------EIESKERGGRLHFIKFETKN-IEECI 67 (341)
T ss_dssp EEEEEE-SSEEEEEEEEESS--CHHHHHCHHHHHHHHH-EE-------------EEEETTEEEEEEEEEEEGGG-HHHHH
T ss_pred eEEEEcCCceEEEEEEeecCCCcccccccccchhhhhhhhc-------------cccccCcCCEEEEEEechhh-HHHHH
Confidence 99999999999999999998766554445555555554210 11222334599999999999 99999
Q ss_pred HHH-----------------------------HHHHHcCCceeeechhhhhhhhhhhhhhhCCCceEEeeCCCCccceee
Q psy3290 83 RVI-----------------------------MRIQEVNMKLEKCDELDCLIRGMLFIEANYPLECYYWANSTVEDKCTK 133 (147)
Q Consensus 83 ~~~-----------------------------~f~~~lgv~l~k~DEMecLI~Gl~fll~~i~~E~ft~~~~~~~~~~~~ 133 (147)
+|+ +|++++|++++|+|||+|||+|++|+++++|+|||+|+++.++++.++
T Consensus 68 ~fi~~~~~~~~~~~~~~~~I~aTGGGA~Ky~~~~~~~Lgv~v~K~DEm~clI~Gl~fLl~~i~~E~f~y~~~~~~~~~~~ 147 (341)
T PF03630_consen 68 DFIKENILEHKGISQKITKICATGGGAFKYADLFKEKLGVEVQKEDEMECLIKGLNFLLKNIPDEVFTYDNDEDPEKFEK 147 (341)
T ss_dssp HHHHHS--S-TTGGGCSSEEEEESTTHHHHHCHHHCTSTSEEEE--HHHHHHHHHHHHHHTTB-SEEEEETTTSTTT-EE
T ss_pred HHHHHhhhhccccCccceEEEEeCCcHHHHHHHHHHhcCCCeeEehHHHHHHhhHHHHHhcCCcceEEEecCCCcceecc
Confidence 999 688899999999999999999999999999999999999888887777
Q ss_pred ecCCCCCCccccC
Q psy3290 134 VQYDFTNPYPFIY 146 (147)
Q Consensus 134 ~~~~~~~~YPyLL 146 (147)
++.+.+++|||||
T Consensus 148 ~~~~~~~~~Pyll 160 (341)
T PF03630_consen 148 VPIDNSDIYPYLL 160 (341)
T ss_dssp EEETTSS-SSEEE
T ss_pred cccCCCCCCcEEE
Confidence 7888899999997
No 3
>PLN02920 pantothenate kinase 1
Probab=99.96 E-value=7.7e-30 Score=221.95 Aligned_cols=116 Identities=24% Similarity=0.437 Sum_probs=92.0
Q ss_pred CceEEeecCceeEEEEeeeCCCCCCchhhHHHHHHHHHHHhhhcccCCCCCcccccceeecceeeEEEEEecchhhHHHH
Q psy3290 2 PWFGMDIGGTLSKLVYFEPKDITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQVLYTTLTLLCIELISDDTVVDF 81 (147)
Q Consensus 2 p~faiDIGGTL~KlVYf~~~~~~~~~~~~e~~~l~~i~~~l~~n~~yg~~g~rd~~le~~~~t~~LhFikFeT~~~i~~f 81 (147)
.||||||||||+|||||++........+. ..+. .......||||++|||.+ |++|
T Consensus 19 ~~~a~Diggsl~Klvy~~~~~~~~~~~~~---------------~~~~---------~~~~~~g~l~F~~F~T~~-i~~~ 73 (398)
T PLN02920 19 SHLALDIGGSLIKLVYFSRNSGDSEDPRN---------------DSSV---------KSDGVNGRLHFAKFETRK-INDC 73 (398)
T ss_pred eEEEEEcCCceEEEEEEeccCCccccccc---------------cccc---------cccCCCceEEEEEecccC-HHHH
Confidence 69999999999999999987643322110 0000 001223599999999999 9999
Q ss_pred HHHH-----------------------------------HHHHHcCCceeeechhhhhhhhhhhhhhhCCCceEEeeCCC
Q psy3290 82 IRVI-----------------------------------MRIQEVNMKLEKCDELDCLIRGMLFIEANYPLECYYWANST 126 (147)
Q Consensus 82 i~~~-----------------------------------~f~~~lgv~l~k~DEMecLI~Gl~fll~~i~~E~ft~~~~~ 126 (147)
|+|+ .|++++|++++|+|||+|||+|++|+++++|+|||||.++.
T Consensus 74 i~fl~~~~~~~~~~~~~~~~~~~~~~i~~TGGGA~k~~~~~~~~~~i~~~k~DEm~~li~Gl~fLl~~~~~e~f~y~~~~ 153 (398)
T PLN02920 74 LEFISSNKLHHGGFQHHENPTHDKNFIKATGGGAYKFADLFKEKLGISLDKEDEMDCLVTGANFLLKAVHHEAFTYLDGQ 153 (398)
T ss_pred HHHHHhccccccccccccccCCCceEEEEECCcHHHHHHHHHhhhCCCceeecHHHHHHHHHHHHHhhCCcceeEeccCc
Confidence 9998 56788999999999999999999999999999999998743
Q ss_pred CccceeeecCCCCCCccccC
Q psy3290 127 VEDKCTKVQYDFTNPYPFIY 146 (147)
Q Consensus 127 ~~~~~~~~~~~~~~~YPyLL 146 (147)
. ++++.+.+++|||||
T Consensus 154 ~----~~~~~~~~~lyPyLL 169 (398)
T PLN02920 154 K----EFVQIDHNDLYPYLL 169 (398)
T ss_pred c----cccccCccccCceEE
Confidence 2 345667778999997
No 4
>PTZ00297 pantothenate kinase; Provisional
Probab=99.96 E-value=4.8e-29 Score=243.23 Aligned_cols=130 Identities=22% Similarity=0.324 Sum_probs=107.8
Q ss_pred eEEeecCceeEEEEeeeCC--CCCCchhhHHHHHHHHHHHhhhcccCCCCCcccccceeec-------------ceeeEE
Q psy3290 4 FGMDIGGTLSKLVYFEPKD--ITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQVLY-------------TTLTLL 68 (147)
Q Consensus 4 faiDIGGTL~KlVYf~~~~--~~~~~~~~e~~~l~~i~~~l~~n~~yg~~g~rd~~le~~~-------------~t~~Lh 68 (147)
++||||||+|||||++|+. ..++...+|+++|+ ++.|+|+.|+..+. ..++||
T Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 1109 (1452)
T PTZ00297 1042 VTIDIGGTFAKIAYVQPPGGFAFPTYIVHEASSLS------------EKLGLRTFHFFADAEAAESELRTRPHSRVGTLR 1109 (1452)
T ss_pred eEEecCceeEEEEEEeCCCCCCCcchhhhhhhhhh------------hccCccccccccChHHhhhhhccCCCCCceEEE
Confidence 6899999999999999983 23333346766664 55799998887764 335999
Q ss_pred EEEecchhhHHHHHHHH-----------------------------HHHHHcCCceeeechhhhhhhhhhhhhhhCCCce
Q psy3290 69 CIELISDDTVVDFIRVI-----------------------------MRIQEVNMKLEKCDELDCLIRGMLFIEANYPLEC 119 (147)
Q Consensus 69 FikFeT~~~i~~fi~~~-----------------------------~f~~~lgv~l~k~DEMecLI~Gl~fll~~i~~E~ 119 (147)
|+||||.+ |++||+|+ +|++.+|+++.|+|||+|||+|++|+++++|+|+
T Consensus 1110 f~~f~t~~-i~~~~~~l~~~~~~~~~~~~~~~~i~~TGGGA~k~~~~~~~~~~~~~~~~dEm~~li~G~~~l~~~~~~~~ 1188 (1452)
T PTZ00297 1110 FAKIPSKQ-IPDFADYLAGSHAINYYKPQYRTKVRATGGGAFKYASVAKKVLGINFSVMREMDAVVKGLNLVIRVAPESI 1188 (1452)
T ss_pred EEEecccC-HHHHHHHHHhhhhhcccCcCCceEEEEeCCcHHHHHHHHHHHhCCCcceecHHHHHHHHHHHHHhcCCceE
Confidence 99999999 99999999 5688899999999999999999999999999999
Q ss_pred EEeeCCCC---ccceeeecCCCCCCccccC
Q psy3290 120 YYWANSTV---EDKCTKVQYDFTNPYPFIY 146 (147)
Q Consensus 120 ft~~~~~~---~~~~~~~~~~~~~~YPyLL 146 (147)
|||+...+ ++++++.+.+.+++|||||
T Consensus 1189 f~~~~~~~~~~~~~~~~~~~~~~~~yp~ll 1218 (1452)
T PTZ00297 1189 FTVDPSTGVHHPHQLVSPPGDGFSPFPCLL 1218 (1452)
T ss_pred EEeccccccccccccccCccccCCCCceEE
Confidence 99987432 3456666677789999998
No 5
>PLN02902 pantothenate kinase
Probab=99.95 E-value=4.6e-28 Score=225.80 Aligned_cols=128 Identities=23% Similarity=0.408 Sum_probs=93.9
Q ss_pred CceEEeecCceeEEEEeeeCCCCCCchhhHHHHHHHHHHHhhhcccCCCCCcccccceeecceeeEEEEEecchhhHHHH
Q psy3290 2 PWFGMDIGGTLSKLVYFEPKDITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQVLYTTLTLLCIELISDDTVVDF 81 (147)
Q Consensus 2 p~faiDIGGTL~KlVYf~~~~~~~~~~~~e~~~l~~i~~~l~~n~~yg~~g~rd~~le~~~~t~~LhFikFeT~~~i~~f 81 (147)
.|+|+||||||+|||||++......+..... +.+..++.- .+.|. ..+....|||||+|||.+ |++|
T Consensus 54 ~h~~~digg~l~klvy~s~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~---~~~~~~grl~F~~fet~~-~~~~ 120 (876)
T PLN02902 54 SHLALDIGGSLIKLVYFSRHEDRSTDDKRKR-TIKERLGIT--------NGNRR---SYPILGGRLHFVKFETSK-INEC 120 (876)
T ss_pred eeEEEecCCceEEEEEEeccCCccccccccc-ccccccccc--------ccccc---cccCCCceEEEEEcCccc-HHHH
Confidence 5999999999999999999754322211000 000000000 01111 112234599999999999 9999
Q ss_pred HHHH-------------------------------------HHHHHcCCceeeechhhhhhhhhhhhhhhCCCceEEeeC
Q psy3290 82 IRVI-------------------------------------MRIQEVNMKLEKCDELDCLIRGMLFIEANYPLECYYWAN 124 (147)
Q Consensus 82 i~~~-------------------------------------~f~~~lgv~l~k~DEMecLI~Gl~fll~~i~~E~ft~~~ 124 (147)
|+|+ .|++++|++++|+|||+|||+|++|+++++|+|||||.+
T Consensus 121 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~aTGGGA~K~~~~~~~~l~~~l~k~DEm~~li~Gl~fLl~~i~~e~f~~~~ 200 (876)
T PLN02902 121 LDFISSKQLHRGGIHSWLSKAPPNGNGVIKATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHME 200 (876)
T ss_pred HHHHHHhcccccchhhhccccCCCCceEEEEeCCccccHHHHHHHHhCCCeeeecHHHHHHHHHHHHHhhCcchheeecc
Confidence 9999 678999999999999999999999999999999999975
Q ss_pred CCCccceeeecCCCCCCccccC
Q psy3290 125 STVEDKCTKVQYDFTNPYPFIY 146 (147)
Q Consensus 125 ~~~~~~~~~~~~~~~~~YPyLL 146 (147)
.. .++++.+..++|||||
T Consensus 201 ~~----~~~~~~~~~~lyPyLL 218 (876)
T PLN02902 201 GE----KEFVQIDQNDLFPYLL 218 (876)
T ss_pred cc----ccccccCccCCCceEE
Confidence 32 3556677789999997
No 6
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=99.83 E-value=4.1e-21 Score=160.04 Aligned_cols=101 Identities=22% Similarity=0.354 Sum_probs=81.1
Q ss_pred ceEEeecCceeEEEEeeeCCCCCCchhhHHHHHHHHHHHhhhcccCCCCCcccccceeecceeeEEEEEecchhhHHHHH
Q psy3290 3 WFGMDIGGTLSKLVYFEPKDITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQVLYTTLTLLCIELISDDTVVDFI 82 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~~~~~~~~~~~e~~~l~~i~~~l~~n~~yg~~g~rd~~le~~~~t~~LhFikFeT~~~i~~fi 82 (147)
++||||||||||+|| ||..+ -||.|..+||.+ |++|+
T Consensus 20 ~vaiDiGGtLaKvv~-sp~~s-----------------------------------------nrl~F~t~eT~k-Id~~v 56 (342)
T COG5146 20 KVAIDIGGTLAKVVQ-SPSQS-----------------------------------------NRLTFKTEETKK-IDQVV 56 (342)
T ss_pred EEEEecCceeeeeee-Ccccc-----------------------------------------cceeeehHhhhh-HHHHH
Confidence 579999999999999 43210 178999999999 99999
Q ss_pred HHH-----------------------------HHHHHcCCceeeechhhhhhhhhhhhhhhCCCceEEeeCCCCccceee
Q psy3290 83 RVI-----------------------------MRIQEVNMKLEKCDELDCLIRGMLFIEANYPLECYYWANSTVEDKCTK 133 (147)
Q Consensus 83 ~~~-----------------------------~f~~~lgv~l~k~DEMecLI~Gl~fll~~i~~E~ft~~~~~~~~~~~~ 133 (147)
+++ ...+.+.+++.+++||+|||.||||+..+||+|+|++.+.+..-..+-
T Consensus 57 e~l~~li~~h~k~C~~~~~liatGGga~kfyd~m~~~~~ikv~r~~eme~li~gl~~fv~~IP~evFv~~d~~~e~~~~~ 136 (342)
T COG5146 57 EWLNNLIQQHEKLCLTKITLIATGGGAYKFYDRMSKQLDIKVIRENEMEILINGLNYFVINIPAEVFVEFDAASEGLGIL 136 (342)
T ss_pred HHHHHHHHHHHhhhhheeeEEecCCcchhhHHHHhhhccceeeecchHHHHHhcccceeeeccHHHeeeeccccchhhhh
Confidence 998 345789999999999999999999999999999999998543211111
Q ss_pred ecCCCCCCccccC
Q psy3290 134 VQYDFTNPYPFIY 146 (147)
Q Consensus 134 ~~~~~~~~YPyLL 146 (147)
..-...++|||||
T Consensus 137 ~~~~~h~lypyil 149 (342)
T COG5146 137 LKEQGHDLYPYIL 149 (342)
T ss_pred hhhccccccceee
Confidence 1223367999997
No 7
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=99.79 E-value=2.1e-19 Score=150.84 Aligned_cols=72 Identities=33% Similarity=0.548 Sum_probs=63.7
Q ss_pred CceEEeecCceeEEEEeeeCCCCCCchhhHHHHHHHHHHHhhhcccCCCCCcccccceeecceeeEEEEEecchhhHHHH
Q psy3290 2 PWFGMDIGGTLSKLVYFEPKDITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQVLYTTLTLLCIELISDDTVVDF 81 (147)
Q Consensus 2 p~faiDIGGTL~KlVYf~~~~~~~~~~~~e~~~l~~i~~~l~~n~~yg~~g~rd~~le~~~~t~~LhFikFeT~~~i~~f 81 (147)
+|+|||||||++|+||++.. .++||++|||.+ +++|
T Consensus 1 ~~iGiDiGgT~~Kiv~~~~~-------------------------------------------~~~~f~~~~~~~-~~~~ 36 (279)
T TIGR00555 1 SRIGIDIGGTLIKVVYEEPK-------------------------------------------GRRKFKTFETTN-IDKF 36 (279)
T ss_pred CeEEEEeCcceEEEEEEcCC-------------------------------------------CcEEEEEeeccc-HHHH
Confidence 58999999999999998631 269999999999 9999
Q ss_pred HHHH-------------------------HHHHHcCCceeeechhhhhhhhhhhhhhhCCC
Q psy3290 82 IRVI-------------------------MRIQEVNMKLEKCDELDCLIRGMLFIEANYPL 117 (147)
Q Consensus 82 i~~~-------------------------~f~~~lgv~l~k~DEMecLI~Gl~fll~~i~~ 117 (147)
++|+ .|+..+|++++|+|||+|+++|++|++.+.|+
T Consensus 37 ~~~l~~~~~~~~~~~~i~~TGgGa~k~~~~~~~~~~v~~~k~dE~~a~~~g~~~ll~~~~~ 97 (279)
T TIGR00555 37 IEWLKNQIHRHSRITTLCATGGGAFKFAELIYESAGIQLHKFDEFDALIQGLNYLLKEEPK 97 (279)
T ss_pred HHHHHHHHHhhcCceEEEEECCcHHHHHHHhccccCCcccchhHHHHHHHHHHHHhhcccC
Confidence 9999 45666789999999999999999999987765
No 8
>PRK13317 pantothenate kinase; Provisional
Probab=99.02 E-value=9.8e-10 Score=92.13 Aligned_cols=69 Identities=23% Similarity=0.289 Sum_probs=55.4
Q ss_pred ceEEeecCceeEEEEeeeCCCCCCchhhHHHHHHHHHHHhhhcccCCCCCcccccceeecceeeEEEEEecchhhHHHHH
Q psy3290 3 WFGMDIGGTLSKLVYFEPKDITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQVLYTTLTLLCIELISDDTVVDFI 82 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~~~~~~~~~~~e~~~l~~i~~~l~~n~~yg~~g~rd~~le~~~~t~~LhFikFeT~~~i~~fi 82 (147)
++|||||||++|+||+.... +++|.+|.+.. .+.++
T Consensus 4 ~iGIDiGstt~K~v~~~~~~-------------------------------------------~~~~~~~~~~~-~~~~~ 39 (277)
T PRK13317 4 KIGIDAGGTLTKIVYLEEKK-------------------------------------------QRTFKTEYSAE-GKKVI 39 (277)
T ss_pred eEEEEeCcccEEEEEEcCCC-------------------------------------------eEEEEeeccHH-HHHHH
Confidence 58999999999999998421 35677777777 77777
Q ss_pred HHH-----------------HHHH--HcCCceeeechhhhhhhhhhhhhhhC
Q psy3290 83 RVI-----------------MRIQ--EVNMKLEKCDELDCLIRGMLFIEANY 115 (147)
Q Consensus 83 ~~~-----------------~f~~--~lgv~l~k~DEMecLI~Gl~fll~~i 115 (147)
+++ .+.+ .+|+++.|.|||+|+++|++|++++.
T Consensus 40 ~~l~~~~~~~~i~~TG~g~~~~~~~~~~~~~~~~v~E~~a~~~g~~~l~~~~ 91 (277)
T PRK13317 40 DWLINLQDIEKICLTGGKAGYLQQLLNYGYPIAEFVEFEATGLGVRYLLKEE 91 (277)
T ss_pred HHhhccCCceEEEEECcchhhhhHHHhcCCCeeeeHHHHHHHHHHHHHHHhc
Confidence 775 4444 48999999999999999999998543
No 9
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=91.31 E-value=0.21 Score=34.25 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=17.9
Q ss_pred CCceEEeecCceeEEEEeeeC
Q psy3290 1 MPWFGMDIGGTLSKLVYFEPK 21 (147)
Q Consensus 1 ~p~faiDIGGTL~KlVYf~~~ 21 (147)
|-.+|+|||||-+|++...+.
T Consensus 1 ~~ilgiD~Ggt~i~~a~~d~~ 21 (99)
T smart00732 1 KRVLGLDPGRKGIGVAVVDET 21 (99)
T ss_pred CcEEEEccCCCeEEEEEECCC
Confidence 346899999999999999764
No 10
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=90.35 E-value=1.2 Score=39.82 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=19.4
Q ss_pred echhhhhhhhhhhhhhhCCCceEEee
Q psy3290 98 CDELDCLIRGMLFIEANYPLECYYWA 123 (147)
Q Consensus 98 ~DEMecLI~Gl~fll~~i~~E~ft~~ 123 (147)
..|+.|..+|..|+..+.|+...-.+
T Consensus 222 v~EItaha~GA~~L~p~~~~v~TIID 247 (404)
T TIGR03286 222 QEELTVNSKGAVYLADKQEGPATVID 247 (404)
T ss_pred EEEEhhHHHHHHHhcccCCCCcEEEE
Confidence 79999999999999765555443333
No 11
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=87.22 E-value=0.49 Score=37.12 Aligned_cols=18 Identities=33% Similarity=0.824 Sum_probs=16.9
Q ss_pred eEEeecCceeEEEEeeeC
Q psy3290 4 FGMDIGGTLSKLVYFEPK 21 (147)
Q Consensus 4 faiDIGGTL~KlVYf~~~ 21 (147)
+|||+|||.+-.|.+.+.
T Consensus 2 igIDvGGT~TD~v~~d~~ 19 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDED 19 (176)
T ss_pred eeEecCCCcEEEEEEeCC
Confidence 799999999999999985
No 12
>PRK13318 pantothenate kinase; Reviewed
Probab=86.26 E-value=0.62 Score=38.14 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=15.8
Q ss_pred ceEEeecCceeEEEEee
Q psy3290 3 WFGMDIGGTLSKLVYFE 19 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~ 19 (147)
.++||||||-+|...|.
T Consensus 2 iL~IDIGnT~iK~al~d 18 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE 18 (258)
T ss_pred EEEEEECCCcEEEEEEE
Confidence 57999999999999997
No 13
>PRK13321 pantothenate kinase; Reviewed
Probab=85.57 E-value=0.75 Score=37.76 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=16.3
Q ss_pred ceEEeecCceeEEEEeee
Q psy3290 3 WFGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~ 20 (147)
+++||||||-+|+..|..
T Consensus 2 iL~IDIGnT~ik~gl~~~ 19 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDG 19 (256)
T ss_pred EEEEEECCCeEEEEEEEC
Confidence 589999999999999974
No 14
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=79.68 E-value=1.1 Score=41.52 Aligned_cols=96 Identities=19% Similarity=0.186 Sum_probs=48.6
Q ss_pred CceEEeecCceeEEEEeeeCCCCCCchh---hHHHHH-HHHHHHhhhc-------ccCCCCCcccccceeecceeeEEEE
Q psy3290 2 PWFGMDIGGTLSKLVYFEPKDITPDEAN---SEIETL-KNIRKYLTKN-------KAYGSTGHRDTHLQVLYTTLTLLCI 70 (147)
Q Consensus 2 p~faiDIGGTL~KlVYf~~~~~~~~~~~---~e~~~l-~~i~~~l~~n-------~~yg~~g~rd~~le~~~~t~~LhFi 70 (147)
|++|+|||||-+|+.-+.....-..... ...+++ ..+++++... ...|-.|.=|.. .... -++.+.
T Consensus 19 ~~L~iDIGGT~ir~al~~~~g~i~~~~~~~t~~~~~~~~~i~~~l~~~~~~~~~~igig~pGpVd~~-~~~~--~nl~w~ 95 (638)
T PRK14101 19 PRLLADVGGTNARFALETGPGEITQIRVYPGADYPTLTDAIRKYLKDVKIGRVNHAAIAIANPVDGD-QVRM--TNHDWS 95 (638)
T ss_pred CEEEEEcCchhheeeeecCCCcccceeEEecCCCCCHHHHHHHHHHhcCCCCcceEEEEEecCccCC-eeee--cCCCcE
Confidence 7899999999999998843221000000 011122 4466776432 112222322211 0000 022221
Q ss_pred EecchhhHHHHHHHHHHHHHcCCc-eeeechhhhhhhhhhhh
Q psy3290 71 ELISDDTVVDFIRVIMRIQEVNMK-LEKCDELDCLIRGMLFI 111 (147)
Q Consensus 71 kFeT~~~i~~fi~~~~f~~~lgv~-l~k~DEMecLI~Gl~fl 111 (147)
++ . -.+++++|+. +.-+.-..|..-|...+
T Consensus 96 -~~----~------~~l~~~~g~~~v~l~ND~~aaA~ge~~l 126 (638)
T PRK14101 96 -FS----I------EATRRALGFDTLLVVNDFTALAMALPGL 126 (638)
T ss_pred -ec----H------HHHHHHcCCCeEEEEchHHHHHcCCccC
Confidence 21 1 1456778985 67888888888886443
No 15
>PRK00292 glk glucokinase; Provisional
Probab=79.48 E-value=1.6 Score=36.33 Aligned_cols=26 Identities=12% Similarity=0.110 Sum_probs=22.2
Q ss_pred HHHHHcCCc-eeeechhhhhhhhhhhh
Q psy3290 86 MRIQEVNMK-LEKCDELDCLIRGMLFI 111 (147)
Q Consensus 86 ~f~~~lgv~-l~k~DEMecLI~Gl~fl 111 (147)
.+++++|+. +.-+....|..-|-.++
T Consensus 85 ~l~~~~~~p~v~l~ND~~aaalgE~~~ 111 (316)
T PRK00292 85 AMKQELGLDHLLLINDFTAQALAIPRL 111 (316)
T ss_pred HHHHHhCCCeEEEEecHHHHHcccccC
Confidence 577889995 99999999999997764
No 16
>PRK12408 glucokinase; Provisional
Probab=74.80 E-value=1.7 Score=37.09 Aligned_cols=26 Identities=0% Similarity=0.216 Sum_probs=22.2
Q ss_pred HHHHHcCCc-eeeechhhhhhhhhhhh
Q psy3290 86 MRIQEVNMK-LEKCDELDCLIRGMLFI 111 (147)
Q Consensus 86 ~f~~~lgv~-l~k~DEMecLI~Gl~fl 111 (147)
.+++.+|+. +.-+.-..|..-|..++
T Consensus 103 ~l~~~~~~~~V~l~ND~naaa~gE~~~ 129 (336)
T PRK12408 103 QIRAQLGLQAVHLVNDFEAVAYAAPYM 129 (336)
T ss_pred HHHHHcCCCeEEEeecHHHHHcccccC
Confidence 566789995 99999999999998777
No 17
>PTZ00288 glucokinase 1; Provisional
Probab=73.11 E-value=7.4 Score=34.64 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=16.6
Q ss_pred ceEEeecCceeEEEEeeeC
Q psy3290 3 WFGMDIGGTLSKLVYFEPK 21 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~~ 21 (147)
.+|.|||||-+++.+|...
T Consensus 28 ~~~~DiGgt~~R~~~~~~~ 46 (405)
T PTZ00288 28 FVGCDVGGTNARVGFAREV 46 (405)
T ss_pred EEEEEecCCceEEEEEecc
Confidence 3688999999999999863
No 18
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=67.96 E-value=4.3 Score=32.95 Aligned_cols=18 Identities=39% Similarity=0.647 Sum_probs=15.3
Q ss_pred eEEeecCceeEEEEeeeC
Q psy3290 4 FGMDIGGTLSKLVYFEPK 21 (147)
Q Consensus 4 faiDIGGTL~KlVYf~~~ 21 (147)
+|||+|||-+|.|=+...
T Consensus 1 lGIDgGgTkt~~vl~d~~ 18 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDEN 18 (271)
T ss_dssp EEEEECSSEEEEEEEETT
T ss_pred CEEeeChheeeeEEEeCC
Confidence 599999999999877743
No 19
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=67.75 E-value=4.2 Score=34.07 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=19.3
Q ss_pred HHHHHcCC-ceeeechhhhhhhhh
Q psy3290 86 MRIQEVNM-KLEKCDELDCLIRGM 108 (147)
Q Consensus 86 ~f~~~lgv-~l~k~DEMecLI~Gl 108 (147)
.+++++|+ ++.-+.-.+|..-|.
T Consensus 84 ~l~~~~g~~~V~l~ND~naaa~ge 107 (316)
T TIGR00749 84 ELKQNLGFSHLEIINDFTAVSYAI 107 (316)
T ss_pred HHHHhcCCCeEEEEecHHHHHcCC
Confidence 55678998 599999999999886
No 20
>PF04260 DUF436: Protein of unknown function (DUF436) ; InterPro: IPR006340 Members of this family are uncharacterised proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome. ; PDB: 1V8D_C.
Probab=64.16 E-value=3.7 Score=32.84 Aligned_cols=11 Identities=55% Similarity=0.658 Sum_probs=7.0
Q ss_pred ceEEeecCcee
Q psy3290 3 WFGMDIGGTLS 13 (147)
Q Consensus 3 ~faiDIGGTL~ 13 (147)
+-|||||+||+
T Consensus 122 ~aGiDIGdTlI 132 (172)
T PF04260_consen 122 DAGIDIGDTLI 132 (172)
T ss_dssp SEEEEESS---
T ss_pred ccCccccccee
Confidence 46999999996
No 21
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=63.37 E-value=6 Score=31.45 Aligned_cols=18 Identities=44% Similarity=0.803 Sum_probs=15.6
Q ss_pred ceEEeecCceeEEEEeee
Q psy3290 3 WFGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~ 20 (147)
.+|||||.|-+|++=|..
T Consensus 2 ~lgiDiGTts~K~~l~d~ 19 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDE 19 (245)
T ss_dssp EEEEEECSSEEEEEEEET
T ss_pred EEEEEEcccceEEEEEeC
Confidence 479999999999888773
No 22
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=61.44 E-value=99 Score=26.07 Aligned_cols=108 Identities=24% Similarity=0.292 Sum_probs=62.2
Q ss_pred EEeecCceeEEEEeeeCCCCCC------------c--hh--hHHHHH-HHHHHHhhhcccCCCCCcccccceeecceeeE
Q psy3290 5 GMDIGGTLSKLVYFEPKDITPD------------E--AN--SEIETL-KNIRKYLTKNKAYGSTGHRDTHLQVLYTTLTL 67 (147)
Q Consensus 5 aiDIGGTL~KlVYf~~~~~~~~------------~--~~--~e~~~l-~~i~~~l~~n~~yg~~g~rd~~le~~~~t~~L 67 (147)
|||||-+.+|+|=.+.+..... . .. ...+.+ +.+++.+..+.. ..+++.+-++...+..
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l~~~~~~~~p~~~i~~g~i~d~~~l~~~L~~~~~~~~~----~~k~v~~aip~~~vi~ 76 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQLEAFASIPLPPGAISDGEIVDPEALAEALKELLKENKI----KGKKVVLAIPGSSVII 76 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EEEEEEEEE--TTSEETTEES-HHHHHHHHHHHHHHHT--------EEEEEE-GGG-EE
T ss_pred CeecCCCeEEEEEEEEcCCccEEEEEEEEECCCCCccCCCcCCHHHHHHHHHHHHHHcCC----CCCeEEEEeCCCcEEE
Confidence 8999999999998887432100 0 00 122233 335555544321 2356677777777788
Q ss_pred EEEEecc----hhhHHHHHHHH---------------------------------------------HHHHHcCCceeee
Q psy3290 68 LCIELIS----DDTVVDFIRVI---------------------------------------------MRIQEVNMKLEKC 98 (147)
Q Consensus 68 hFikFeT----~~~i~~fi~~~---------------------------------------------~f~~~lgv~l~k~ 98 (147)
..+++|. .+ +++.|.|- ..-+.+|+++...
T Consensus 77 r~i~lP~~m~~~e-l~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa~k~~v~~~~~~~~~aGL~~~~v 155 (340)
T PF11104_consen 77 RNIRLPAVMPEKE-LEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAAPKEIVESYVELFEEAGLKPVAV 155 (340)
T ss_dssp EEEEEE----HHH-HHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEEEHHHHHHHHHHHHHTT-EEEEE
T ss_pred EEEecCCCCCHHH-HHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEEcHHHHHHHHHHHHHcCCceEEE
Confidence 8888875 34 66666664 4457889999988
Q ss_pred c-hhhhhhhhhhhhhhhCCC
Q psy3290 99 D-ELDCLIRGMLFIEANYPL 117 (147)
Q Consensus 99 D-EMecLI~Gl~fll~~i~~ 117 (147)
| +--||.+=++++....|.
T Consensus 156 Dv~~~Al~r~~~~~~~~~~~ 175 (340)
T PF11104_consen 156 DVEAFALARLFEFLEPQLPD 175 (340)
T ss_dssp EEHHHHGGGGGHHHHHTST-
T ss_pred eehHHHHHHHHHHHHHhCCc
Confidence 7 456777777776555544
No 23
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=59.17 E-value=7.8 Score=34.57 Aligned_cols=18 Identities=50% Similarity=0.737 Sum_probs=15.3
Q ss_pred ceEEeecCceeEEEEeee
Q psy3290 3 WFGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~ 20 (147)
.+|||||+|.+|.+=|..
T Consensus 2 ~lgiDiGtt~~K~~l~d~ 19 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEE 19 (505)
T ss_pred EEEEeccccceEEEEEcC
Confidence 479999999999887754
No 24
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=57.99 E-value=9.8 Score=30.65 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=16.9
Q ss_pred ceEEeecCceeEEEEeeeCC
Q psy3290 3 WFGMDIGGTLSKLVYFEPKD 22 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~~~ 22 (147)
.+|||+|||-.+++..+=.+
T Consensus 65 ~LalDlGGTnlRv~~V~L~g 84 (206)
T PF00349_consen 65 FLALDLGGTNLRVALVELSG 84 (206)
T ss_dssp EEEEEESSSSEEEEEEEEES
T ss_pred EEEEeecCcEEEEEEEEEcC
Confidence 58999999999988887544
No 25
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=57.10 E-value=7.9 Score=31.31 Aligned_cols=17 Identities=41% Similarity=0.686 Sum_probs=15.1
Q ss_pred ceEEeecCceeEEEEee
Q psy3290 3 WFGMDIGGTLSKLVYFE 19 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~ 19 (147)
.+|||||+|-+|.|-|.
T Consensus 2 ~lGIDiGtts~K~vl~d 18 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLME 18 (248)
T ss_pred EEEEEcChhheEEEEEc
Confidence 37999999999998886
No 26
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=56.58 E-value=9.5 Score=36.27 Aligned_cols=20 Identities=30% Similarity=0.717 Sum_probs=18.0
Q ss_pred ceEEeecCceeEEEEeeeCC
Q psy3290 3 WFGMDIGGTLSKLVYFEPKD 22 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~~~ 22 (147)
.+|||+|||.+=.|++...+
T Consensus 4 ~iGID~GGTfTDaV~~~~~~ 23 (674)
T COG0145 4 RIGIDVGGTFTDAVLLDEDG 23 (674)
T ss_pred EEEEEcCCCcEeEEEEeCCC
Confidence 48999999999999999864
No 27
>PLN02666 5-oxoprolinase
Probab=55.69 E-value=9.1 Score=38.95 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=16.4
Q ss_pred ceEEeecCceeEEEEeeeC
Q psy3290 3 WFGMDIGGTLSKLVYFEPK 21 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~~ 21 (147)
.+|||||||++-+|.+.+.
T Consensus 11 rigIDvGGTFTD~v~~~~~ 29 (1275)
T PLN02666 11 RFCIDRGGTFTDVYAEVPG 29 (1275)
T ss_pred EEEEECCcCCEeEEEEecC
Confidence 4799999999999988753
No 28
>TIGR01440 conserved hypothetical protein TIGR01440. Members of this family are uncharacterized proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome.
Probab=55.18 E-value=4.3 Score=32.46 Aligned_cols=13 Identities=46% Similarity=0.606 Sum_probs=10.5
Q ss_pred ceEEeecCceeEE
Q psy3290 3 WFGMDIGGTLSKL 15 (147)
Q Consensus 3 ~faiDIGGTL~Kl 15 (147)
+-|||||.||+-.
T Consensus 122 ~aGiDIGdT~IGM 134 (172)
T TIGR01440 122 PAGIDIGDTLIGM 134 (172)
T ss_pred ccCcccccceeee
Confidence 4589999999853
No 29
>PRK13320 pantothenate kinase; Reviewed
Probab=54.96 E-value=11 Score=30.95 Aligned_cols=18 Identities=44% Similarity=0.578 Sum_probs=16.6
Q ss_pred ceEEeecCceeEEEEeee
Q psy3290 3 WFGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~ 20 (147)
+++||||.|-+|...|+.
T Consensus 4 ~L~iDiGNT~ik~~~~~~ 21 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFEG 21 (244)
T ss_pred EEEEEeCCCcEEEEEEEC
Confidence 689999999999999984
No 30
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=54.55 E-value=7.5 Score=35.18 Aligned_cols=18 Identities=33% Similarity=0.722 Sum_probs=15.1
Q ss_pred ceEEeecCceeEEEEeee
Q psy3290 3 WFGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~ 20 (147)
.+|||||+|-+|.|=...
T Consensus 4 ~lGIDIGSTsTKaVVmd~ 21 (432)
T TIGR02259 4 FVGIDLGSTTTKAVLMDD 21 (432)
T ss_pred EEEEEcCchhEEEEEEcC
Confidence 479999999999777653
No 31
>PRK13331 pantothenate kinase; Reviewed
Probab=52.35 E-value=14 Score=30.89 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=17.8
Q ss_pred CCceEEeecCceeEEEEeee
Q psy3290 1 MPWFGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 1 ~p~faiDIGGTL~KlVYf~~ 20 (147)
|-++++|||=|-+|+.+|+-
T Consensus 7 ~~~L~iDiGNT~~~~g~f~~ 26 (251)
T PRK13331 7 NEWLALMIGNSRLHWGYFSG 26 (251)
T ss_pred CcEEEEEeCCCcEEEEEEEC
Confidence 34799999999999999984
No 32
>COG3569 Topoisomerase IB [DNA replication, recombination, and repair]
Probab=51.68 E-value=12 Score=33.05 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=28.9
Q ss_pred HHhhhcccCCCCCcccccceeecceeeEEEEEe
Q psy3290 40 KYLTKNKAYGSTGHRDTHLQVLYTTLTLLCIEL 72 (147)
Q Consensus 40 ~~l~~n~~yg~~g~rd~~le~~~~t~~LhFikF 72 (147)
.|.+.|.+||.||.++-|......+++|.|.-=
T Consensus 155 ~y~r~ngsyg~TtllkRhV~~~~~ti~~~f~gk 187 (354)
T COG3569 155 AYARDNGSYGLTTLLKRHVDVEGSTIRFRFKGK 187 (354)
T ss_pred HHhhccCCcCcccceeeeeccCCCEEEEEecCC
Confidence 688999999999999999999888888888643
No 33
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=50.57 E-value=13 Score=33.56 Aligned_cols=18 Identities=17% Similarity=0.545 Sum_probs=15.5
Q ss_pred ceEEeecCceeEEEEeee
Q psy3290 3 WFGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~ 20 (147)
.+|||||+|.+|.+=|..
T Consensus 2 ~lgID~GTts~Ka~l~d~ 19 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDS 19 (541)
T ss_pred EEEEEecCcCEEEEEEcC
Confidence 479999999999888864
No 34
>PRK13690 hypothetical protein; Provisional
Probab=50.04 E-value=5.8 Score=32.08 Aligned_cols=12 Identities=50% Similarity=0.695 Sum_probs=10.2
Q ss_pred ceEEeecCceeE
Q psy3290 3 WFGMDIGGTLSK 14 (147)
Q Consensus 3 ~faiDIGGTL~K 14 (147)
+-|||||.||+-
T Consensus 129 ~AGiDIGdT~IG 140 (184)
T PRK13690 129 HAGIDIGDTLIG 140 (184)
T ss_pred ccCcccccceee
Confidence 468999999985
No 35
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=49.99 E-value=15 Score=30.30 Aligned_cols=32 Identities=3% Similarity=0.007 Sum_probs=26.1
Q ss_pred HHHH-HHHHHcCCceeeechhhhhhhhhhhhhh
Q psy3290 82 IRVI-MRIQEVNMKLEKCDELDCLIRGMLFIEA 113 (147)
Q Consensus 82 i~~~-~f~~~lgv~l~k~DEMecLI~Gl~fll~ 113 (147)
+++. .+++.+|+.+.-+..-.|..-|=.++-.
T Consensus 96 ~~l~~~L~~~~~~Pv~veNDan~aalaE~~~g~ 128 (314)
T COG1940 96 VDLAEELEARLGLPVFVENDANAAALAEAWFGA 128 (314)
T ss_pred ccHHHHHHHHHCCCEEEecHHHHHHHHHHHhCC
Confidence 3344 7889999999999999999988777754
No 36
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=49.46 E-value=14 Score=32.86 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=15.0
Q ss_pred ceEEeecCceeEEEEeee
Q psy3290 3 WFGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~ 20 (147)
.+|||||+|.+|.+=|..
T Consensus 3 ~lgiDiGtt~iKa~l~d~ 20 (493)
T TIGR01311 3 ILAIDQGTTSSRAIVFDK 20 (493)
T ss_pred EEEEecCCCceEEEEECC
Confidence 478999999999877754
No 37
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=47.17 E-value=19 Score=25.95 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.5
Q ss_pred eEEeecCceeEEEEeee
Q psy3290 4 FGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 4 faiDIGGTL~KlVYf~~ 20 (147)
.+||||++-++++-|+.
T Consensus 2 ~~iDiGs~~~~~~i~~~ 18 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAED 18 (120)
T ss_dssp EEEEE-SSSEEEEEEET
T ss_pred EEEEcCCCcEEEEEEEe
Confidence 58999999999999886
No 38
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=45.66 E-value=18 Score=29.58 Aligned_cols=26 Identities=4% Similarity=-0.131 Sum_probs=20.5
Q ss_pred HHHHHcCCceeeechhhhhhhhhhhh
Q psy3290 86 MRIQEVNMKLEKCDELDCLIRGMLFI 111 (147)
Q Consensus 86 ~f~~~lgv~l~k~DEMecLI~Gl~fl 111 (147)
.+++++++.+.-+....|...|=.+.
T Consensus 91 ~l~~~~~~pv~v~NDa~a~a~aE~~~ 116 (291)
T PRK05082 91 TLEQLTDLPTIALNDAQAAAWAEYQA 116 (291)
T ss_pred HHHHHhCCCEEEECcHHHHHHHHHHh
Confidence 46788899999999999987775443
No 39
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=44.99 E-value=18 Score=30.20 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=13.9
Q ss_pred ceEEeecCceeEEEEee
Q psy3290 3 WFGMDIGGTLSKLVYFE 19 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~ 19 (147)
|+|||+|.|.+|+ |+.
T Consensus 7 ~igIDlGt~~~~i-~~~ 22 (334)
T PRK13927 7 DLGIDLGTANTLV-YVK 22 (334)
T ss_pred eeEEEcCcceEEE-EEC
Confidence 7999999999997 654
No 40
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=44.28 E-value=21 Score=29.26 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=16.2
Q ss_pred ceEEeecCceeEEEEeee
Q psy3290 3 WFGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~ 20 (147)
|+++|||=|-+|+..|+-
T Consensus 1 ~L~iDiGNT~i~~g~~~~ 18 (243)
T TIGR00671 1 LLLIDVGNTRIVFALNSG 18 (243)
T ss_pred CEEEEECCCcEEEEEEEC
Confidence 789999999999999863
No 41
>PRK00047 glpK glycerol kinase; Provisional
Probab=43.84 E-value=19 Score=32.09 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=15.3
Q ss_pred ceEEeecCceeEEEEeee
Q psy3290 3 WFGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~ 20 (147)
.+|||||+|.+|.+=|..
T Consensus 7 ~lgiD~GTts~Ka~l~d~ 24 (498)
T PRK00047 7 ILALDQGTTSSRAIIFDH 24 (498)
T ss_pred EEEEecCCCceEEEEECC
Confidence 479999999999877754
No 42
>cd01395 HMT_MBD Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated transcriptional repression. SETDB1 and other proteins in this group have a similar domain architecture. SETDB1 is a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins.
Probab=43.01 E-value=27 Score=23.24 Aligned_cols=33 Identities=15% Similarity=0.483 Sum_probs=24.0
Q ss_pred EeecCceeEEEEeeeCCCCCCchhhHHHHHHHHHHHhhhc
Q psy3290 6 MDIGGTLSKLVYFEPKDITPDEANSEIETLKNIRKYLTKN 45 (147)
Q Consensus 6 iDIGGTL~KlVYf~~~~~~~~~~~~e~~~l~~i~~~l~~n 45 (147)
.++||+.-=++|++|.+ ..-+++.++.+||..+
T Consensus 17 ~~~~~~k~~V~Y~aPCG-------r~Lr~~~EV~~YL~~t 49 (60)
T cd01395 17 ARVGKVKKHVIYKAPCG-------RSLRNMSEVHRYLRET 49 (60)
T ss_pred ccCCCcccceEEECCcc-------hhhhcHHHHHHHHHhc
Confidence 35666666699999986 2345578899999765
No 43
>PHA03101 DNA topoisomerase type I; Provisional
Probab=41.88 E-value=26 Score=30.54 Aligned_cols=31 Identities=19% Similarity=0.420 Sum_probs=26.9
Q ss_pred HHhhhcccCCCCCcccccceeecceeeEEEE
Q psy3290 40 KYLTKNKAYGSTGHRDTHLQVLYTTLTLLCI 70 (147)
Q Consensus 40 ~~l~~n~~yg~~g~rd~~le~~~~t~~LhFi 70 (147)
+|...|.+||-+-.|..|+++....++|+|.
T Consensus 136 ~Ya~~N~SyGltTLr~rHv~v~g~~i~f~F~ 166 (314)
T PHA03101 136 KYLKENETVGLLTLKNKHITISNDKILIKFV 166 (314)
T ss_pred hHHHhcCCccccccchhceEEECCEEEEEEE
Confidence 6888899999999999999998777777774
No 44
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=41.60 E-value=24 Score=28.51 Aligned_cols=27 Identities=4% Similarity=0.062 Sum_probs=21.6
Q ss_pred HHHHHcCCceeeechhhhhhhhhhhhh
Q psy3290 86 MRIQEVNMKLEKCDELDCLIRGMLFIE 112 (147)
Q Consensus 86 ~f~~~lgv~l~k~DEMecLI~Gl~fll 112 (147)
.+++++++.+.-+-.-.|..-|=.+.-
T Consensus 91 ~l~~~~~~pV~leNDanaaAlaE~~~g 117 (256)
T PRK13311 91 DLSRLIQREVRIDNDANCFALSEAWDP 117 (256)
T ss_pred HHHHHHCCCEEEEchhhHHHHHHHHhc
Confidence 567888999999999888887766653
No 45
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=41.20 E-value=20 Score=29.82 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=13.4
Q ss_pred ceEEeecCceeEEEEe
Q psy3290 3 WFGMDIGGTLSKLVYF 18 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf 18 (147)
|+|||+|-|.+|+.++
T Consensus 10 ~vgiDlGt~~t~i~~~ 25 (335)
T PRK13930 10 DIGIDLGTANTLVYVK 25 (335)
T ss_pred ceEEEcCCCcEEEEEC
Confidence 3679999999999775
No 46
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=40.33 E-value=22 Score=30.56 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=15.3
Q ss_pred ceEEeecCceeEEEEee
Q psy3290 3 WFGMDIGGTLSKLVYFE 19 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~ 19 (147)
.+|||||.|-+|+|-..
T Consensus 34 ~~GIDiGStt~K~Vlld 50 (293)
T TIGR03192 34 TCGIDVGSVSSQAVLVC 50 (293)
T ss_pred EEEEEeCchhEEEEEEe
Confidence 47999999999998886
No 47
>cd00659 Topo_IB_C DNA topoisomerase IB, C-terminal catalytic domain. Topoisomerase I promotes the relaxation of both positive and negative DNA superhelical tension by introducing a transient single-stranded break in duplex DNA. This function is vital for the processes of replication, transcription, and recombination. Unlike Topo IA enzymes, Topo IB enzymes do not require a single-stranded region of DNA or metal ions for their function. The type IB family of DNA topoisomerases includes eukaryotic nuclear topoisomerase I, topoisomerases of poxviruses and bacterial versions of Topo IB. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their C-terminal catalytic domain and the overall reaction mechanism with tyrosine recombinases. The C-terminal catalytic domain in topoisomerases is linked to a divergent N-terminal domain that shows no sequence or structure similarity to the N-terminal domains of tyrosine recombinases.
Probab=38.63 E-value=25 Score=28.83 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=25.3
Q ss_pred HHhhhcccCCCCCcccccceeecceeeEEE
Q psy3290 40 KYLTKNKAYGSTGHRDTHLQVLYTTLTLLC 69 (147)
Q Consensus 40 ~~l~~n~~yg~~g~rd~~le~~~~t~~LhF 69 (147)
+|...|.+||-+..|..|.++....++|.|
T Consensus 61 ~Ya~~n~s~GltTLr~~Hv~~~~~~i~f~F 90 (218)
T cd00659 61 KYERENDTVGLCTLRKEHVTLKPNVVRFDF 90 (218)
T ss_pred hhhhcCCCEeecccchhheeEeCCEEEEEE
Confidence 588889999999999999998776666665
No 48
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=38.49 E-value=21 Score=30.17 Aligned_cols=17 Identities=47% Similarity=0.575 Sum_probs=15.3
Q ss_pred ceEEeecCceeEEEEee
Q psy3290 3 WFGMDIGGTLSKLVYFE 19 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~ 19 (147)
..|||||.|-+|.|=+.
T Consensus 3 ~~GIDiGStttK~Vlid 19 (262)
T TIGR02261 3 TAGIDIGTGAIKTVLFE 19 (262)
T ss_pred EEEEEcCcccEEEEEEe
Confidence 36999999999999887
No 49
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=36.37 E-value=37 Score=26.73 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=14.9
Q ss_pred ceEEeecCceeEEEEeee
Q psy3290 3 WFGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~ 20 (147)
++.||||=|-+|...|+.
T Consensus 1 ~L~iDiGNT~ik~~~~~~ 18 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDG 18 (206)
T ss_dssp EEEEEE-SSEEEEEEEET
T ss_pred CEEEEECCCeEEEEEEEC
Confidence 578999999999999963
No 50
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=35.87 E-value=29 Score=26.70 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=14.1
Q ss_pred eEEeecCceeEEEEeee
Q psy3290 4 FGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 4 faiDIGGTL~KlVYf~~ 20 (147)
.|+|||-|-+|+|=-+.
T Consensus 2 ~~lDIGs~~ik~vv~~~ 18 (187)
T smart00842 2 VGLDIGTSKIKALVAEV 18 (187)
T ss_pred EEEEeccceEEEEEEEE
Confidence 69999999999875543
No 51
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=35.48 E-value=32 Score=30.89 Aligned_cols=19 Identities=42% Similarity=0.653 Sum_probs=17.4
Q ss_pred ceEEeecCceeEEEEeeeC
Q psy3290 3 WFGMDIGGTLSKLVYFEPK 21 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~~ 21 (147)
.+|||||.|-+|.|=|...
T Consensus 6 ~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 6 VLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred EEEEEcCCCcEEEEEEeCC
Confidence 6899999999999999876
No 52
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=34.90 E-value=24 Score=30.51 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=14.2
Q ss_pred eEEeecCceeEEEEee
Q psy3290 4 FGMDIGGTLSKLVYFE 19 (147)
Q Consensus 4 faiDIGGTL~KlVYf~ 19 (147)
+.+|||||-+++.=..
T Consensus 131 I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 131 LFVDMGSTTTDIIPII 146 (318)
T ss_pred EEEEcCccceeeEEec
Confidence 6899999999998775
No 53
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=34.88 E-value=35 Score=28.69 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=16.8
Q ss_pred CceEEeecCceeEEEEee
Q psy3290 2 PWFGMDIGGTLSKLVYFE 19 (147)
Q Consensus 2 p~faiDIGGTL~KlVYf~ 19 (147)
||+++|||-|.+|...++
T Consensus 1 ~~L~iDiGNT~~~~a~~~ 18 (251)
T COG1521 1 MLLLIDIGNTRIVFALYE 18 (251)
T ss_pred CeEEEEeCCCeEEEEEec
Confidence 689999999999999997
No 54
>PRK15027 xylulokinase; Provisional
Probab=34.74 E-value=33 Score=30.37 Aligned_cols=18 Identities=22% Similarity=0.626 Sum_probs=15.7
Q ss_pred ceEEeecCceeEEEEeee
Q psy3290 3 WFGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~ 20 (147)
++|||||.|-+|.+=|..
T Consensus 2 ~lgID~GTts~Ka~l~d~ 19 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNE 19 (484)
T ss_pred EEEEEecccceEEEEEcC
Confidence 479999999999887775
No 55
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=34.18 E-value=35 Score=31.91 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=17.7
Q ss_pred CCceEEeecCceeEEEEeee
Q psy3290 1 MPWFGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 1 ~p~faiDIGGTL~KlVYf~~ 20 (147)
++.+|||.|.|.++++++.+
T Consensus 4 ~~~iGIDlGTt~s~va~~~~ 23 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWKN 23 (653)
T ss_pred ccEEEEEeCcccEEEEEEeC
Confidence 46799999999999999865
No 56
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=34.06 E-value=19 Score=29.29 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=15.8
Q ss_pred EEeecCceeEEEEeeeCC
Q psy3290 5 GMDIGGTLSKLVYFEPKD 22 (147)
Q Consensus 5 aiDIGGTL~KlVYf~~~~ 22 (147)
|+|||.|-+|+|=.+..+
T Consensus 1 g~dig~~~ik~v~~~~~~ 18 (239)
T TIGR02529 1 GVDLGTANIVIVVLDEDG 18 (239)
T ss_pred CCCcccceEEEEEEecCC
Confidence 689999999999988654
No 57
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=33.60 E-value=39 Score=30.27 Aligned_cols=18 Identities=39% Similarity=0.648 Sum_probs=15.0
Q ss_pred eEEeecCceeEEEEeeeC
Q psy3290 4 FGMDIGGTLSKLVYFEPK 21 (147)
Q Consensus 4 faiDIGGTL~KlVYf~~~ 21 (147)
+|||+|.|.+++.++...
T Consensus 2 iGID~Gt~~~~va~~~~~ 19 (602)
T PF00012_consen 2 IGIDLGTTNSKVAVFKNG 19 (602)
T ss_dssp EEEEE-SSEEEEEEEETT
T ss_pred EEEEeccCCEEEEEEEec
Confidence 799999999999998753
No 58
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=33.38 E-value=31 Score=28.89 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=13.5
Q ss_pred ceEEeecCceeEEEEeee
Q psy3290 3 WFGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~ 20 (147)
-+.+|||||-+.+.-...
T Consensus 79 ~i~vDmGGTTtDi~~i~~ 96 (290)
T PF01968_consen 79 AIVVDMGGTTTDIALIKD 96 (290)
T ss_dssp EEEEEE-SS-EEEEEEET
T ss_pred EEEEeCCCCEEEEEEEEC
Confidence 478999999999998863
No 59
>PRK13324 pantothenate kinase; Reviewed
Probab=33.36 E-value=40 Score=28.09 Aligned_cols=18 Identities=22% Similarity=0.398 Sum_probs=16.4
Q ss_pred ceEEeecCceeEEEEeee
Q psy3290 3 WFGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~ 20 (147)
++++|||=|-+|+..|+.
T Consensus 2 iL~iDiGNT~ik~gl~~~ 19 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG 19 (258)
T ss_pred EEEEEeCCCceEEEEEEC
Confidence 689999999999999983
No 60
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=33.22 E-value=31 Score=28.29 Aligned_cols=26 Identities=4% Similarity=0.060 Sum_probs=20.8
Q ss_pred HHHHHcCCceeeechhhhhhhhhhhh
Q psy3290 86 MRIQEVNMKLEKCDELDCLIRGMLFI 111 (147)
Q Consensus 86 ~f~~~lgv~l~k~DEMecLI~Gl~fl 111 (147)
.+++++|+.+.-+..-.|..-|=.+.
T Consensus 91 ~l~~~~~~pV~ieNDa~aaalaE~~~ 116 (303)
T PRK13310 91 DLSARLGRDVRLDNDANCFALSEAWD 116 (303)
T ss_pred HHHHHHCCCeEEeccHhHHHHHHhhh
Confidence 56788899999999998888775554
No 61
>PF06577 DUF1134: Protein of unknown function (DUF1134); InterPro: IPR008325 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.85 E-value=37 Score=26.95 Aligned_cols=19 Identities=53% Similarity=0.882 Sum_probs=16.4
Q ss_pred CceEEeecCceeE---EEEeee
Q psy3290 2 PWFGMDIGGTLSK---LVYFEP 20 (147)
Q Consensus 2 p~faiDIGGTL~K---lVYf~~ 20 (147)
|.+|.|+||.-+| |||=-|
T Consensus 76 PSiG~D~G~~~~r~~~LVYnL~ 97 (160)
T PF06577_consen 76 PSIGFDFGGNGSRVFMLVYNLP 97 (160)
T ss_pred CceeEeecCCceEEEEEEEcCC
Confidence 8899999999999 788554
No 62
>PRK09698 D-allose kinase; Provisional
Probab=31.56 E-value=42 Score=27.45 Aligned_cols=22 Identities=5% Similarity=-0.103 Sum_probs=17.8
Q ss_pred HHHHHcCCceeeechhhhhhhh
Q psy3290 86 MRIQEVNMKLEKCDELDCLIRG 107 (147)
Q Consensus 86 ~f~~~lgv~l~k~DEMecLI~G 107 (147)
.+++.+|+.+.-+....|...|
T Consensus 99 ~l~~~~~~pv~v~NDa~aaa~~ 120 (302)
T PRK09698 99 KLENTLNCPVFFSRDVNLQLLW 120 (302)
T ss_pred HHHHHhCCCEEEcchHhHHHHH
Confidence 5678899999999988886655
No 63
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=31.27 E-value=43 Score=30.65 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=16.8
Q ss_pred CceEEeecCceeEEEEeee
Q psy3290 2 PWFGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 2 p~faiDIGGTL~KlVYf~~ 20 (147)
..+|||.|.|.+++.|+.+
T Consensus 1 ~viGIDlGtt~s~va~~~~ 19 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEG 19 (595)
T ss_pred CEEEEEeCcccEEEEEEEC
Confidence 3689999999999999975
No 64
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=31.13 E-value=51 Score=28.26 Aligned_cols=27 Identities=7% Similarity=0.217 Sum_probs=20.0
Q ss_pred HHHHHcCCc-eeeechhhhhhhhhhhhh
Q psy3290 86 MRIQEVNMK-LEKCDELDCLIRGMLFIE 112 (147)
Q Consensus 86 ~f~~~lgv~-l~k~DEMecLI~Gl~fll 112 (147)
.+++.+|+. +.-..-++.+--|+..+.
T Consensus 85 ~l~~~lg~~~v~liNDfeA~a~gl~~L~ 112 (316)
T PF02685_consen 85 ELAQRLGIPRVRLINDFEAQAYGLPALD 112 (316)
T ss_dssp HCHCCCT-TCEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHhCCceEEEEcccchheeccCCCC
Confidence 566777875 777888888888887765
No 65
>PRK09557 fructokinase; Reviewed
Probab=30.12 E-value=46 Score=27.34 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=21.5
Q ss_pred HHHHHcCCceeeechhhhhhhhhhhh
Q psy3290 86 MRIQEVNMKLEKCDELDCLIRGMLFI 111 (147)
Q Consensus 86 ~f~~~lgv~l~k~DEMecLI~Gl~fl 111 (147)
.+++.+|+.+.-+..-.|...|-.+.
T Consensus 91 ~l~~~~~~pv~~~NDa~aaA~aE~~~ 116 (301)
T PRK09557 91 DLSARLNREVRLANDANCLAVSEAVD 116 (301)
T ss_pred HHHHHHCCCEEEccchhHHHHHHHHh
Confidence 46788899999999999988887665
No 66
>PLN02295 glycerol kinase
Probab=30.02 E-value=43 Score=30.00 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=14.7
Q ss_pred eEEeecCceeEEEEeee
Q psy3290 4 FGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 4 faiDIGGTL~KlVYf~~ 20 (147)
+|||||.|-+|.+=|..
T Consensus 3 lgID~GTts~Ka~l~d~ 19 (512)
T PLN02295 3 GAIDQGTTSTRFIIYDR 19 (512)
T ss_pred EEEecCCCceEEEEECC
Confidence 69999999999877764
No 67
>PF06706 CTV_P6: Citrus tristeza virus 6-kDa protein; InterPro: IPR009584 This family consists of several Citrus tristeza virus (CTV) 6 kDa, 51 residue long hydrophobic (P6) proteins. The function of this family is unknown.
Probab=29.71 E-value=26 Score=22.39 Aligned_cols=9 Identities=56% Similarity=1.424 Sum_probs=7.5
Q ss_pred hhhhhhhhh
Q psy3290 101 LDCLIRGML 109 (147)
Q Consensus 101 MecLI~Gl~ 109 (147)
|||+|+|..
T Consensus 1 MDCVIQGfL 9 (51)
T PF06706_consen 1 MDCVIQGFL 9 (51)
T ss_pred CchhHHHHH
Confidence 899999943
No 68
>PRK10331 L-fuculokinase; Provisional
Probab=29.48 E-value=45 Score=29.42 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=15.0
Q ss_pred ceEEeecCceeEEEEeee
Q psy3290 3 WFGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~ 20 (147)
.+|||||.|-+|.+=|..
T Consensus 4 ~lgID~GTt~~Ka~l~d~ 21 (470)
T PRK10331 4 ILVLDCGATNVRAIAVDR 21 (470)
T ss_pred EEEEecCCCceEEEEEcC
Confidence 378999999999887754
No 69
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=29.48 E-value=55 Score=26.80 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=16.8
Q ss_pred CceEEeecCceeEEEEeee
Q psy3290 2 PWFGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 2 p~faiDIGGTL~KlVYf~~ 20 (147)
+.+-+||||-.+-+++++.
T Consensus 113 ~~lviDIGGGStEl~~~~~ 131 (285)
T PF02541_consen 113 NGLVIDIGGGSTELILFEN 131 (285)
T ss_dssp SEEEEEEESSEEEEEEEET
T ss_pred CEEEEEECCCceEEEEEEC
Confidence 4678999999999999965
No 70
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=29.21 E-value=47 Score=30.73 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=17.0
Q ss_pred CceEEeecCceeEEEEeee
Q psy3290 2 PWFGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 2 p~faiDIGGTL~KlVYf~~ 20 (147)
+.+|||.|.|.+++.|+.+
T Consensus 3 ~viGIDlGTt~s~va~~~~ 21 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEG 21 (627)
T ss_pred cEEEEEeCcccEEEEEEEC
Confidence 4799999999999999964
No 71
>PHA02744 hypothetical protein; Provisional
Probab=28.43 E-value=50 Score=23.70 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.8
Q ss_pred EEeecCceeEEEEeee
Q psy3290 5 GMDIGGTLSKLVYFEP 20 (147)
Q Consensus 5 aiDIGGTL~KlVYf~~ 20 (147)
.+-|||.-|||.|+-.
T Consensus 47 ~~~i~gVTAkL~y~~~ 62 (88)
T PHA02744 47 NTNIAGVSTKLEYNDL 62 (88)
T ss_pred eEEEccEEEEEEEcCC
Confidence 4679999999999875
No 72
>CHL00094 dnaK heat shock protein 70
Probab=28.42 E-value=51 Score=30.55 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=16.9
Q ss_pred CceEEeecCceeEEEEeee
Q psy3290 2 PWFGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 2 p~faiDIGGTL~KlVYf~~ 20 (147)
+.+|||+|.|.++++++.+
T Consensus 3 ~viGIDlGTt~s~va~~~~ 21 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEG 21 (621)
T ss_pred ceEEEEeCcccEEEEEEEC
Confidence 5799999999999999864
No 73
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=28.35 E-value=48 Score=29.60 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=15.1
Q ss_pred ceEEeecCceeEEEEeee
Q psy3290 3 WFGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~ 20 (147)
.+|||||.|-+|.+=|..
T Consensus 4 ~lgiDiGTts~Ka~l~d~ 21 (504)
T PTZ00294 4 IGSIDQGTTSTRFIIFDE 21 (504)
T ss_pred EEEEecCCCceEEEEECC
Confidence 468999999999877765
No 74
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=28.08 E-value=50 Score=29.15 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=15.3
Q ss_pred eEEeecCceeEEEEeeeC
Q psy3290 4 FGMDIGGTLSKLVYFEPK 21 (147)
Q Consensus 4 faiDIGGTL~KlVYf~~~ 21 (147)
+|||||.|-+|.+=|...
T Consensus 4 lgiD~GTss~K~~l~d~~ 21 (465)
T TIGR02628 4 LVLDCGATNLRAIAINRQ 21 (465)
T ss_pred EEEecCCCcEEEEEEcCC
Confidence 689999999998877753
No 75
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=28.02 E-value=49 Score=29.65 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=15.9
Q ss_pred ceEEeecCceeEEEEeeeC
Q psy3290 3 WFGMDIGGTLSKLVYFEPK 21 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~~ 21 (147)
.+|||||.|-+|.+=|...
T Consensus 5 ~lgID~GTts~Ka~l~d~~ 23 (520)
T PRK10939 5 LMALDAGTGSIRAVIFDLN 23 (520)
T ss_pred EEEEecCCCceEEEEECCC
Confidence 4789999999998877753
No 76
>PRK04123 ribulokinase; Provisional
Probab=27.93 E-value=52 Score=29.68 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=15.8
Q ss_pred ceEEeecCceeEEEEeee
Q psy3290 3 WFGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~ 20 (147)
.+|||||.|-+|.+=|..
T Consensus 5 ~lgiD~GTts~Ka~l~d~ 22 (548)
T PRK04123 5 VIGLDFGTDSVRALLVDC 22 (548)
T ss_pred EEEEecCCCceEEEEEEC
Confidence 579999999999888873
No 77
>PRK13322 pantothenate kinase; Reviewed
Probab=27.49 E-value=54 Score=26.95 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=16.5
Q ss_pred ceEEeecCceeEEEEeee
Q psy3290 3 WFGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~ 20 (147)
.+.||||=|-+|...|+.
T Consensus 2 ~L~IDiGNT~iK~~l~~~ 19 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN 19 (246)
T ss_pred EEEEEeCCCcEEEEEEcC
Confidence 578999999999999995
No 78
>PRK13326 pantothenate kinase; Reviewed
Probab=26.72 E-value=63 Score=26.96 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=16.3
Q ss_pred ceEEeecCceeEEEEeee
Q psy3290 3 WFGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~ 20 (147)
.++||||=|-+|+..|+-
T Consensus 8 ~L~IDiGNT~ik~glf~~ 25 (262)
T PRK13326 8 QLIIDIGNTSISFALYKD 25 (262)
T ss_pred EEEEEeCCCeEEEEEEEC
Confidence 478999999999999985
No 79
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=26.15 E-value=50 Score=27.20 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=16.0
Q ss_pred ceEEeecCceeEEEEeeeC
Q psy3290 3 WFGMDIGGTLSKLVYFEPK 21 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~~ 21 (147)
..|||||.|-+|+|=.+..
T Consensus 26 ~~~iDiGSssi~~vv~~~~ 44 (267)
T PRK15080 26 KVGVDLGTANIVLAVLDED 44 (267)
T ss_pred EEEEEccCceEEEEEEcCC
Confidence 3699999999998887753
No 80
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=26.02 E-value=57 Score=26.79 Aligned_cols=27 Identities=7% Similarity=-0.048 Sum_probs=21.7
Q ss_pred HHHHHcCCceeeechhhhhhhhhhhhh
Q psy3290 86 MRIQEVNMKLEKCDELDCLIRGMLFIE 112 (147)
Q Consensus 86 ~f~~~lgv~l~k~DEMecLI~Gl~fll 112 (147)
.+++++|+.+.-+..-.|...|-.+.-
T Consensus 92 ~l~~~~~~pv~v~NDa~~~alaE~~~g 118 (318)
T TIGR00744 92 KVEARVGLPVVVENDANAAALGEYKKG 118 (318)
T ss_pred HHHHHHCCCEEEechHHHHHHHHHHhc
Confidence 467889999999999999888766553
No 81
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=25.65 E-value=48 Score=30.47 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=14.6
Q ss_pred ceEEeecCceeEEEEee
Q psy3290 3 WFGMDIGGTLSKLVYFE 19 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~ 19 (147)
..|||||.|-++||+-.
T Consensus 5 SVGIDIGTSTTQlvfSr 21 (473)
T PF06277_consen 5 SVGIDIGTSTTQLVFSR 21 (473)
T ss_pred EEEEeecCCceeEEEEE
Confidence 47999999999998755
No 82
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=24.77 E-value=87 Score=27.44 Aligned_cols=44 Identities=27% Similarity=0.501 Sum_probs=26.8
Q ss_pred CceEEeecCceeEEEEeeeCCCCCCchh----hHHHHHH-HHHHHhhhc
Q psy3290 2 PWFGMDIGGTLSKLVYFEPKDITPDEAN----SEIETLK-NIRKYLTKN 45 (147)
Q Consensus 2 p~faiDIGGTL~KlVYf~~~~~~~~~~~----~e~~~l~-~i~~~l~~n 45 (147)
|.+.=|||||-+.+.-.++...++...+ .+=.++. .+++||.+.
T Consensus 7 p~LvgDIGGTnaRfaLv~~a~~~~~~~~~~~~~dypsle~av~~yl~~~ 55 (320)
T COG0837 7 PRLVGDIGGTNARFALVEIAPAEPLQAETYACADYPSLEEAVQDYLSEH 55 (320)
T ss_pred ceEEEecCCcceEEEEeccCCCCccccceecccCcCCHHHHHHHHHHHh
Confidence 6667799999999888776543222211 1222232 388999555
No 83
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=24.48 E-value=70 Score=26.97 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=14.4
Q ss_pred eEEeecCceeEEEEeeeC
Q psy3290 4 FGMDIGGTLSKLVYFEPK 21 (147)
Q Consensus 4 faiDIGGTL~KlVYf~~~ 21 (147)
+++|-|-|-+||+|++..
T Consensus 3 i~iDdG~~~~K~~~~~~~ 20 (318)
T PF06406_consen 3 IAIDDGSTNVKLAWYEDG 20 (318)
T ss_dssp EEEEE-SSEEEEEEE-SS
T ss_pred EEEecCCCceeEEEecCC
Confidence 799999999999999743
No 84
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=24.06 E-value=55 Score=22.45 Aligned_cols=26 Identities=23% Similarity=0.533 Sum_probs=18.5
Q ss_pred EEEeeeCCCCCCchhhHHHHHHHHHHHhhhccc
Q psy3290 15 LVYFEPKDITPDEANSEIETLKNIRKYLTKNKA 47 (147)
Q Consensus 15 lVYf~~~~~~~~~~~~e~~~l~~i~~~l~~n~~ 47 (147)
+.|++|.+ ..-++..++.+||.+|..
T Consensus 30 V~Y~sP~G-------kklRs~~ev~~YL~~~~~ 55 (77)
T smart00391 30 VYYISPCG-------KKLRSKSELARYLHKNGD 55 (77)
T ss_pred EEEECCCC-------CeeeCHHHHHHHHHhCCC
Confidence 67888865 245567889999977653
No 85
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=24.04 E-value=58 Score=27.76 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=14.4
Q ss_pred eEEeecCceeEEEEeee
Q psy3290 4 FGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 4 faiDIGGTL~KlVYf~~ 20 (147)
.|+|||-|-+|+|=-+.
T Consensus 3 ~~lDIGs~~ik~vv~~~ 19 (371)
T TIGR01174 3 VGLDIGTSKICAIVAEV 19 (371)
T ss_pred EEEEeccceEEEEEEEE
Confidence 59999999999886554
No 86
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=24.02 E-value=75 Score=23.59 Aligned_cols=28 Identities=4% Similarity=-0.026 Sum_probs=23.7
Q ss_pred HHHHHcCCceeeechhhhhhhhhhhhhh
Q psy3290 86 MRIQEVNMKLEKCDELDCLIRGMLFIEA 113 (147)
Q Consensus 86 ~f~~~lgv~l~k~DEMecLI~Gl~fll~ 113 (147)
.+++.+++.+.-+....|...|-.++-.
T Consensus 86 ~l~~~~~~pv~i~Nd~~~~a~ae~~~~~ 113 (179)
T PF00480_consen 86 ELEERFGVPVIIENDANAAALAEYWFGA 113 (179)
T ss_dssp HHHHHHTSEEEEEEHHHHHHHHHHHHST
T ss_pred HhhcccceEEEEecCCCcceeehhhcCc
Confidence 6788999999999999999988766543
No 87
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=22.91 E-value=62 Score=20.94 Aligned_cols=25 Identities=20% Similarity=0.566 Sum_probs=17.1
Q ss_pred EEEeeeCCCCCCchhhHHHHHHHHHHHhhhcc
Q psy3290 15 LVYFEPKDITPDEANSEIETLKNIRKYLTKNK 46 (147)
Q Consensus 15 lVYf~~~~~~~~~~~~e~~~l~~i~~~l~~n~ 46 (147)
+.|++|.+ .+-++..++.+||.++.
T Consensus 27 v~Y~sP~G-------k~~Rs~~ev~~yL~~~~ 51 (62)
T cd00122 27 VYYYSPCG-------KKLRSKPEVARYLEKTG 51 (62)
T ss_pred EEEECCCC-------ceecCHHHHHHHHHhCC
Confidence 55667654 24566788999997663
No 88
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=22.81 E-value=35 Score=29.61 Aligned_cols=17 Identities=41% Similarity=0.749 Sum_probs=13.4
Q ss_pred CCceEEeecCceeEEEE
Q psy3290 1 MPWFGMDIGGTLSKLVY 17 (147)
Q Consensus 1 ~p~faiDIGGTL~KlVY 17 (147)
|-.+|+||||--+|+.=
T Consensus 3 ~kilGiDIGGAntk~a~ 19 (330)
T COG1548 3 MKILGIDIGGANTKIAS 19 (330)
T ss_pred ceEEEeeccCccchhhh
Confidence 34689999999998653
No 89
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=22.75 E-value=75 Score=28.67 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=15.5
Q ss_pred ceEEeecCceeEEEEee
Q psy3290 3 WFGMDIGGTLSKLVYFE 19 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~ 19 (147)
.+|||+|.|-+|.+=|.
T Consensus 3 ~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 3 AIGVDFGTLSGRALAVD 19 (536)
T ss_pred EEEEecCCCceEEEEEE
Confidence 47999999999999888
No 90
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=22.47 E-value=73 Score=29.36 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=14.2
Q ss_pred ceEEeecCceeEEEEee
Q psy3290 3 WFGMDIGGTLSKLVYFE 19 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~ 19 (147)
..|||||.|-++||+-+
T Consensus 8 SVGIDIGTsTTqlvfSr 24 (475)
T PRK10719 8 SVGIDIGTTTTQVIFSR 24 (475)
T ss_pred EEEEeccCceEEEEEEE
Confidence 36999999999998744
No 91
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.51 E-value=55 Score=31.22 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=14.5
Q ss_pred ceEEeecCceeEEEEee
Q psy3290 3 WFGMDIGGTLSKLVYFE 19 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~ 19 (147)
.+++|||||-+++.=+.
T Consensus 280 ~i~~DmGGTStDva~i~ 296 (674)
T COG0145 280 AIVFDMGGTSTDVALII 296 (674)
T ss_pred EEEEEcCCcceeeeeee
Confidence 46899999999988666
No 92
>PTZ00107 hexokinase; Provisional
Probab=21.26 E-value=83 Score=28.62 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=16.0
Q ss_pred ceEEeecCceeEEEEeeeCC
Q psy3290 3 WFGMDIGGTLSKLVYFEPKD 22 (147)
Q Consensus 3 ~faiDIGGTL~KlVYf~~~~ 22 (147)
.+|||.|||--+++-.+=.+
T Consensus 76 fLAlDlGGTN~RV~~V~L~g 95 (464)
T PTZ00107 76 YYAIDFGGTNFRAVRVSLRG 95 (464)
T ss_pred EEEEecCCceEEEEEEEeCC
Confidence 57999999999977766543
No 93
>COG1799 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.25 E-value=1.9e+02 Score=23.00 Aligned_cols=51 Identities=18% Similarity=0.338 Sum_probs=36.0
Q ss_pred ecCceeEEEEeeeCCCCCCchhhHHHHHHHHHHHhhhcccCCCCCcccccceeecceeeEEEEEecchhhHHHHHHHH
Q psy3290 8 IGGTLSKLVYFEPKDITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQVLYTTLTLLCIELISDDTVVDFIRVI 85 (147)
Q Consensus 8 IGGTL~KlVYf~~~~~~~~~~~~e~~~l~~i~~~l~~n~~yg~~g~rd~~le~~~~t~~LhFikFeT~~~i~~fi~~~ 85 (147)
++-+.+|+|..+|+... + ...|-.+|..+. .+.++|....-.. -.+|++|+
T Consensus 69 ~~~~~s~iv~~ePr~ye--d-------a~~ia~~lk~~k-----------------~Vvinl~~m~~~q-ArRivDFl 119 (167)
T COG1799 69 AAQDSSKIVLLEPRKYE--D-------AQEIADYLKNRK-----------------AVVINLQRMDPAQ-ARRIVDFL 119 (167)
T ss_pred ccCCceEEEEecCccHH--H-------HHHHHHHHhcCc-----------------eEEEEeeeCCHHH-HHHHHHHh
Confidence 45788999999998752 2 345667773332 3577777777776 77899988
No 94
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=20.63 E-value=60 Score=23.82 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=11.0
Q ss_pred CceEEeecCceeE
Q psy3290 2 PWFGMDIGGTLSK 14 (147)
Q Consensus 2 p~faiDIGGTL~K 14 (147)
|-+.+|++|||+.
T Consensus 1 ~~~~~d~dgtl~~ 13 (147)
T TIGR01656 1 PALFLDRDGVINE 13 (147)
T ss_pred CeEEEeCCCceec
Confidence 5688999999985
No 95
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=20.23 E-value=61 Score=28.10 Aligned_cols=17 Identities=35% Similarity=0.700 Sum_probs=14.7
Q ss_pred eEEeecCceeEEEEeee
Q psy3290 4 FGMDIGGTLSKLVYFEP 20 (147)
Q Consensus 4 faiDIGGTL~KlVYf~~ 20 (147)
+|+||||--.|++...+
T Consensus 1 ~G~DiGGA~~K~a~~~~ 17 (318)
T TIGR03123 1 LGIDIGGANTKAAELDE 17 (318)
T ss_pred CccccccceeeeEEecC
Confidence 58999999999997764
Done!