RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3290
(147 letters)
>gnl|CDD|217646 pfam03630, Fumble, Fumble. Fumble is required for cell division in
Drosophila. Mutants lacking fumble exhibit abnormalities
in bipolar spindle organisation, chromosome segregation,
and contractile ring formation. Analyses have
demonstrated that encodes three protein isoforms, all of
which contain a domain with high similarity to the
pantothenate kinases of A. nidulans and mouse. A role of
fumble in membrane synthesis has been proposed.
Length = 329
Score = 101 bits (253), Expect = 1e-26
Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 21/156 (13%)
Query: 2 PWFGMDIGGTLSKLVYFEPKDITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQVL 61
+DIGGTL KLVYF P DI+PDE +SE +LKNI + R ++
Sbjct: 1 SHVAIDIGGTLIKLVYFSPVDISPDEESSEGHSLKNILSQERRG--------RLHFIKFE 52
Query: 62 YTTLTLLCIELISDDTVVDFIRVIM-----------RIQEV-NMKLEKCDELDCLIRGML 109
T + L +E + + + V+ +E N+KL+K DE+DCLI+G+
Sbjct: 53 TTDIDL-FLEFLKEKLLNKLTTVLCATGGGAYKFEELFRENLNVKLQKEDEMDCLIQGLN 111
Query: 110 FIEANYPLECYYWANSTVEDKCTKVQYDFTNPYPFI 145
F+ N P EC+ ++N T +K Q + + YP++
Sbjct: 112 FLLKNIPAECFTYSNDTDGEKTEFQQINNDDLYPYL 147
>gnl|CDD|233021 TIGR00555, panK_eukar, pantothenate kinase,
eukaryotic/staphyloccocal type. This model describes a
eukaryotic form of pantothenate kinase, characterized
from the fungus Aspergillus nidulans and with similar
forms known in several other eukaryotes. It also
includes forms from several Gram-positive bacteria
suggested to have originated from the eukaryotic form by
lateral transfer. It differs in a number of biochemical
properties (such as inhibition by acetyl-CoA) from most
bacterial CoaA and lacks sequence similarity. This
enzyme is the key regulatory step in the biosynthesis of
coenzyme A (CoA) [Biosynthesis of cofactors, prosthetic
groups, and carriers, Pantothenate and coenzyme A].
Length = 296
Score = 49.3 bits (118), Expect = 9e-08
Identities = 39/153 (25%), Positives = 57/153 (37%), Gaps = 41/153 (26%)
Query: 2 PWFGMDIGGTLSKLVYFEPKDITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQVL 61
G+DIGGTL K+VY E K RK+ T T + D ++ L
Sbjct: 1 SRIGIDIGGTLIKVVYEE---------------KKGRRKFKTFE-----TTNIDKFIEWL 40
Query: 62 ------YTTLTLLCIELISDDTVVDFIRVIMRIQEVNMKLEKCDELDCLIRGMLFI---E 112
++ +T LC + I IQ L K DE D LI+G+ ++ E
Sbjct: 41 KNQIHRHSRITTLCATGGGAFKFAELIYESAGIQ-----LHKFDEFDALIQGLNYLLKEE 95
Query: 113 ANYPLECYYWANSTVEDKCTKVQYDFTNPYPFI 145
Y +C K D + YP++
Sbjct: 96 PKEKFTYYD-------FECQKKPIDLDDIYPYL 121
>gnl|CDD|215498 PLN02920, PLN02920, pantothenate kinase 1.
Length = 398
Score = 35.2 bits (81), Expect = 0.007
Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 22/154 (14%)
Query: 6 MDIGGTLSKLVYFEPK---DITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQVLY 62
+DIGG+L KLVYF P +S N R + K + T + L+ +
Sbjct: 23 LDIGGSLIKLVYFSRNSGDSEDPRNDSSVKSDGVNGRLHFAKFE----TRKINDCLEFIS 78
Query: 63 TTLTLL--CIELISDDTVVDFIRVI---------MRIQEVNMKLEKCDELDCLIRGMLFI 111
+ + +FI+ + +++ + L+K DE+DCL+ G F+
Sbjct: 79 SNKLHHGGFQHHENPTHDKNFIKATGGGAYKFADLFKEKLGISLDKEDEMDCLVTGANFL 138
Query: 112 EANYPLECYYWANSTVEDKCTKVQYDFTNPYPFI 145
E + + + E VQ D + YP++
Sbjct: 139 LKAVHHEAFTYLDGQKE----FVQIDHNDLYPYL 168
>gnl|CDD|215489 PLN02902, PLN02902, pantothenate kinase.
Length = 876
Score = 34.9 bits (80), Expect = 0.011
Identities = 37/168 (22%), Positives = 67/168 (39%), Gaps = 32/168 (19%)
Query: 4 FGMDIGGTLSKLVYFEPKDITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQVLYT 63
+DIGG+L KLVYF + + + + + ++Y G R H T
Sbjct: 56 LALDIGGSLIKLVYFSRHEDRSTDDKRKRTIKERLGITNGNRRSYPILGGR-LHFVKFET 114
Query: 64 TLTLLCIELISD-------------DTVVDFIRVI------------MRIQEVNMKLEKC 98
+ C++ IS + VI + + + + L+K
Sbjct: 115 SKINECLDFISSKQLHRGGIHSWLSKAPPNGNGVIKATGGGAYKFADLFKERLGVSLDKE 174
Query: 99 DELDCLIRGMLFIEANYPLECY-YWANSTVEDKCTKVQYDFTNPYPFI 145
DE+DCL+ G AN+ L+ + A + +E + VQ D + +P++
Sbjct: 175 DEMDCLVAG-----ANFLLKAIRHEAFTHMEGEKEFVQIDQNDLFPYL 217
>gnl|CDD|227475 COG5146, PanK, Pantothenate kinase, acetyl-CoA regulated [Coenzyme
metabolism].
Length = 342
Score = 30.3 bits (68), Expect = 0.30
Identities = 28/143 (19%), Positives = 58/143 (40%), Gaps = 16/143 (11%)
Query: 5 GMDIGGTLSKLVYFEPKDITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQVLYTT 64
+DIGGTL+K+V + + + E K I + + H ++ T
Sbjct: 22 AIDIGGTLAKVVQSPSQS---NRLTFKTEETKKIDQVVEWLNNL-----IQQHEKLCLTK 73
Query: 65 LTLLCIELISDDTVVDFIRVIMRIQEVNMKLEKCDELDCLIRGMLFIEANYPLECYYWAN 124
+TL+ + + +++++K+ + +E++ LI G+ + N P E + +
Sbjct: 74 ITLIATGGGA------YKFYDRMSKQLDIKVIRENEMEILINGLNYFVINIPAEVFVEFD 127
Query: 125 STVED--KCTKVQYDFTNPYPFI 145
+ E K Q PY +
Sbjct: 128 AASEGLGILLKEQGHDLYPYILV 150
>gnl|CDD|237346 PRK13317, PRK13317, pantothenate kinase; Provisional.
Length = 277
Score = 28.8 bits (65), Expect = 1.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 5 GMDIGGTLSKLVYFEPKDI 23
G+D GGTL+K+VY E K
Sbjct: 6 GIDAGGTLTKIVYLEEKKQ 24
>gnl|CDD|233085 TIGR00675, dcm, DNA-methyltransferase (dcm). All proteins in this
family for which functions are known are DNA-cytosine
methyltransferases. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 315
Score = 27.7 bits (62), Expect = 2.3
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 7 DIGGTLSKLVYFEPK-DITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQVLYTTL 65
IG L V E K ++ ++ N + L+N+RK + GS +R++ + TL
Sbjct: 181 RIGDLLDLSVDLEEKYYLSEEKKNGLLLLLENMRKKEGTGEQIGSFYNRES-KSSIIRTL 239
Query: 66 T 66
+
Sbjct: 240 S 240
>gnl|CDD|234528 TIGR04264, hyperosmo_Ebh, hyperosmolarity resistance protein Ebh,
N-terminal domain. Staphylococcal protein Ebh
(extracellular matrix-binding protein homolog) is a
giant protein, sometimes over 10,000 amino acids long as
reported. This model describes a non-repetitive
amino-terminal domain of about 2400 amino acids.
Length = 2354
Score = 26.3 bits (58), Expect = 8.0
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 14 KLVYFEPKDITPDEANSEIETLK----NIRKYLTKNKAY 48
K+V P I+ DE N I LK NI YL + Y
Sbjct: 851 KIVVVNPTSISQDERNDIINALKAKNTNISSYLATSNPY 889
>gnl|CDD|220261 pfam09484, Cas_TM1802, CRISPR-associated protein TM1802
(cas_TM1802). Clusters of short DNA repeats with
non-homologous spacers, which are found at regular
intervals in the genomes of phylogenetically distinct
prokaryotic species, comprise a family with recognisable
features. This family is known as CRISPR (short for
Clustered, Regularly Interspaced Short Palindromic
Repeats). A number of protein families appear only in
association with these repeats and are designated Cas
(CRISPR-Associated) proteins. This minor cas protein is
found in at least five prokaryotic genomes:
Methanosarcina mazei, Sulfurihydrogenibium azorense,
Thermotoga maritima, Carboxydothermus hydrogenoformans,
and Dictyoglomus thermophilum, the first of which is
archaeal while the rest are bacterial.
Length = 584
Score = 26.2 bits (58), Expect = 8.3
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 17 YFEPKDITPDEANSEIETLKNIRKYLTKNK 46
F+ E N LK+I+K L KN
Sbjct: 103 IFKKFYKDKGEINKYRYFLKDIKKVLEKNF 132
>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional.
Length = 1452
Score = 26.4 bits (58), Expect = 8.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 6 MDIGGTLSKLVYFEP 20
+DIGGT +K+ Y +P
Sbjct: 1044 IDIGGTFAKIAYVQP 1058
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.140 0.432
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,347,084
Number of extensions: 632261
Number of successful extensions: 539
Number of sequences better than 10.0: 1
Number of HSP's gapped: 538
Number of HSP's successfully gapped: 22
Length of query: 147
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 59
Effective length of database: 7,034,450
Effective search space: 415032550
Effective search space used: 415032550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.6 bits)