RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3290
(147 letters)
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo
sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A*
2i7p_A* 3mk6_A*
Length = 360
Score = 119 bits (299), Expect = 2e-33
Identities = 70/177 (39%), Positives = 92/177 (51%), Gaps = 31/177 (17%)
Query: 1 MPWFGMDIGGTLSKLVYFEPKDITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQV 60
PWFGMDIGGTL KLVYFEPKDIT +E E+E LK+IRKYLT N AYG TG RD HL++
Sbjct: 3 FPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLEL 62
Query: 61 L----------------YTTLTLLCIELISDDTVVDFIRVIMRI------------QEVN 92
+ I++ S+ + +
Sbjct: 63 KNLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAFKFEEDFRMIAD 122
Query: 93 MKLEKCDELDCLIRGMLFIEA---NYPLECYYWANSTVEDKCTKVQYDFTNPYPFIY 146
++L K DELDCLI+G+L++++ N ECYY+ N T + C K Y NPYP +
Sbjct: 123 LQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKKPYCLDNPYPMLL 179
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics
consortium, S transferase; HET: ANP; 2.05A
{Staphylococcus aureus subsp} SCOP: c.55.1.14
Length = 287
Score = 37.8 bits (87), Expect = 5e-04
Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 35/135 (25%)
Query: 5 GMDIGGTLSKLVYFEPKDITPDEANSEIETLKNIRKYLTKNK--AYGSTGHRDTHLQVLY 62
G+D GGTL K+V + T + + + ++L + + TG +
Sbjct: 24 GIDAGGTLIKIVQEQDNQRT--FKTELTKNIDQVVEWLNQQQIEKLCLTGGNAGVIA--- 78
Query: 63 TTLTLLCIELISDDTVVDFIRVIMRIQEVNMKLEKCDELDCLIRGMLFI--EANYPLECY 120
+ +N+ + E D +G+ + E + L Y
Sbjct: 79 --------------------------ENINIPAQIFVEFDAASQGLGILLKEQGHDLADY 112
Query: 121 YWANSTVEDKCTKVQ 135
+AN
Sbjct: 113 IFANVGTGTSLHYFD 127
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.005
Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 28/120 (23%)
Query: 19 EPKD--ITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQVLYTTLTLLCIELISDD 76
EP + DE + E + Y++ G D QVL LT
Sbjct: 43 EPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD---QVLNLCLT---------- 89
Query: 77 TVVDFIRVIMRIQEVNM---KLEKCDELDCLIRGMLFIEANYPLECYYWANSTVEDKCTK 133
+F + +++ KL + ++ + L ++ Y A + K
Sbjct: 90 ---EFENCYLEGNDIHALAAKLLQENDTTLVKTKEL-------IKNYITARIMAKRPFDK 139
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI,
protei structure initiative, NEW YORK SGX research
center for STRU genomics; 1.70A {Anopheles gambiae}
Length = 304
Score = 28.1 bits (63), Expect = 1.0
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 73 ISDDTVVDFIRVIMRIQEVNMKLEK-CDEL--DCLIRG 107
++ + VV F++ RI + MKL K C+EL CL
Sbjct: 250 MTSEQVVQFVQ--ERINKPGMKLSKICEELFDHCLAPH 285
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 1.4
Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 28/107 (26%)
Query: 53 HRDT---HLQVLYTTLTLLCIELISDD----TVVDFIRVIMRIQEVNMKLEKCDELDCLI 105
H D Q Y + + + D+ V D + I+ +E++ + D + +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 106 RGMLFIEANYPLECYYWANSTVEDKCTKVQYDFTNP-----YPFIYN 147
R LF W T+ K ++ F Y F+ +
Sbjct: 66 R--LF-----------W---TLLSKQEEMVQKFVEEVLRINYKFLMS 96
Score = 27.1 bits (59), Expect = 2.5
Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 39/123 (31%)
Query: 13 SKLVYFEPKDITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQVLYTTLTLLCIEL 72
K+ + + ++ LK + Y+ N D + L
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDN---------DPKYE-----------RL 544
Query: 73 ISDDTVVDFIRVIMRIQEVNMKLEKCDELDCLIRGMLFIEANYPLECYYWANSTVEDKCT 132
++ ++DF + +I+E L D L+R L E + E+
Sbjct: 545 VNA--ILDF---LPKIEE---NLICSKYTD-LLRIALMAEDEA----IF------EEAHK 585
Query: 133 KVQ 135
+VQ
Sbjct: 586 QVQ 588
>2x3g_A SIRV1 hypothetical protein ORF119; viral protein, HOST membrane;
1.80A {Sulfolobus islandicus rudivirus 1
variorganism_taxid}
Length = 119
Score = 25.1 bits (54), Expect = 7.4
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 20 PKDITPDEANSEIETLKNIRKYLTKNK 46
DI + I +KN+ KY+ K K
Sbjct: 87 HSDIRIELVPKSISDIKNVYKYMLKTK 113
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450
fold, carrier protein, 4-helix bundle, cytoplasm; HET:
ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1
PDB: 3ejd_A* 3eje_A*
Length = 97
Score = 24.3 bits (53), Expect = 9.7
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 25 PDEANSEIETLKNIRKYLTKNKA 47
PDE +I T++ Y+ ++A
Sbjct: 75 PDEEAEKITTVQAAIDYINGHQA 97
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 25.4 bits (54), Expect = 9.9
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 15 LVYFEPKDITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQVL 61
L+Y E D PD+ E L N K+++ R L L
Sbjct: 838 LIYTEASDYIPDDHQDYAEALINPIKHVSLMD------QRARQLAAL 878
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.432
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,263,943
Number of extensions: 121804
Number of successful extensions: 317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 23
Length of query: 147
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 62
Effective length of database: 4,328,508
Effective search space: 268367496
Effective search space used: 268367496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)