RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3290
         (147 letters)



>d2i7na1 c.55.1.14 (A:236-381) Pantothenate kinase 1, PANK1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 146

 Score =  111 bits (279), Expect = 6e-33
 Identities = 55/141 (39%), Positives = 73/141 (51%), Gaps = 28/141 (19%)

Query: 1   MPWFGMDIGGTLSKLVYFEPKDITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQV 60
            PWFGMDIGGTL KLVYFEPKDIT +E   E+E LK+IRKYLT N AYG TG RD HL++
Sbjct: 1   FPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLEL 60

Query: 61  -------LYTTLTLLCIELISDDTVVDFIR---------VIMR------------IQEVN 92
                      L  +     +    +              +                  +
Sbjct: 61  KNLTMCGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAFKFEEDFRMIAD 120

Query: 93  MKLEKCDELDCLIRGMLFIEA 113
           ++L K DELDCLI+G+L++++
Sbjct: 121 LQLHKLDELDCLIQGLLYVDS 141


>d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 212

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 118 ECYYWANSTVEDKCTKVQYDFTNPYPFI 145
           ECYY+ N T  + C K  Y   NPYP +
Sbjct: 3   ECYYFENPTNPELCQKKPYCLDNPYPML 30


>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 267

 Score = 30.0 bits (66), Expect = 0.080
 Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 10/101 (9%)

Query: 5   GMDIGGTLSKLVYFEPKDITPDEANSEIETLKNIRKYLTKNKAYGSTGHRDTHLQVLYTT 64
           G+D GGTL K+V  +    T        + +  + ++L + +           L +    
Sbjct: 4   GIDAGGTLIKIVQEQDNQRT--FKTELTKNIDQVVEWLNQQQ--------IEKLCLTGGN 53

Query: 65  LTLLCIELISDDTVVDFIRVIMRIQEVNMKLEKCDELDCLI 105
             ++   +     +        +   + +K +  D  D + 
Sbjct: 54  AGVIAENINIPAQIFVEFDAASQGLGILLKEQGHDLADYIF 94


>d2o3bb1 d.221.1.1 (B:1-135) Nuclease A inhibitor (NuiA) {Anabaena
           sp., pcc 7120 [TaxId: 1167]}
          Length = 135

 Score = 25.2 bits (55), Expect = 2.8
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 99  DELDCLIRGMLFI-EANYPLECYYWANSTVE 128
           ++L     G+LF+ E+ YP E + W  S   
Sbjct: 10  EQLKQASDGLLFMSESEYPFEVFLWEGSAPP 40


>d1t8ka_ a.28.1.1 (A:) Acyl carrier protein {Escherichia coli
          [TaxId: 562]}
          Length = 77

 Score = 24.0 bits (52), Expect = 3.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 25 PDEANSEIETLKNIRKYLTKNKA 47
          PDE   +I T++    Y+  ++A
Sbjct: 55 PDEEAEKITTVQAAIDYINGHQA 77


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.140    0.432 

Gapped
Lambda     K      H
   0.267   0.0661    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 574,837
Number of extensions: 24765
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 8
Length of query: 147
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,350,386
Effective search space: 94527020
Effective search space used: 94527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.8 bits)