Query psy3292
Match_columns 213
No_of_seqs 158 out of 1852
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 21:17:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3292.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3292hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01299 synapt_SV2 synaptic 99.8 4E-20 8.7E-25 161.5 11.5 186 5-204 162-379 (742)
2 KOG0569|consensus 99.8 6.4E-19 1.4E-23 146.2 11.8 193 3-206 4-232 (485)
3 TIGR00887 2A0109 phosphate:H+ 99.8 2E-18 4.3E-23 146.5 12.7 187 5-202 11-248 (502)
4 KOG0254|consensus 99.8 1E-17 2.2E-22 142.5 12.9 189 5-204 40-254 (513)
5 PRK10077 xylE D-xylose transpo 99.8 1.7E-17 3.7E-22 139.7 13.2 187 5-202 7-237 (479)
6 PF00083 Sugar_tr: Sugar (and 99.7 6.8E-20 1.5E-24 153.2 -5.9 182 13-205 3-217 (451)
7 COG2814 AraJ Arabinose efflux 99.7 1.2E-16 2.6E-21 129.3 13.1 153 4-159 7-178 (394)
8 TIGR02332 HpaX 4-hydroxyphenyl 99.7 7E-17 1.5E-21 133.9 9.0 149 7-158 5-178 (412)
9 TIGR00891 2A0112 putative sial 99.7 2.9E-16 6.2E-21 129.0 12.1 152 3-157 5-177 (405)
10 PRK14995 methyl viologen resis 99.7 5.8E-16 1.3E-20 131.3 11.3 148 7-157 3-170 (495)
11 PRK11551 putative 3-hydroxyphe 99.7 1.2E-15 2.6E-20 126.0 11.8 170 4-182 9-197 (406)
12 PRK03545 putative arabinose tr 99.6 2.9E-15 6.2E-20 123.3 11.6 150 6-158 5-173 (390)
13 KOG0255|consensus 99.6 7.9E-16 1.7E-20 131.2 7.4 148 42-202 112-277 (521)
14 TIGR00879 SP MFS transporter, 99.6 3.4E-15 7.4E-20 124.7 11.1 174 3-187 21-227 (481)
15 TIGR00898 2A0119 cation transp 99.6 2.9E-15 6.2E-20 127.1 9.5 154 31-201 110-285 (505)
16 TIGR00895 2A0115 benzoate tran 99.6 1.2E-14 2.6E-19 118.9 11.4 150 5-157 12-180 (398)
17 PRK10642 proline/glycine betai 99.6 2.1E-14 4.5E-19 121.7 12.6 164 9-182 15-219 (490)
18 PRK12307 putative sialic acid 99.6 1.6E-14 3.4E-19 120.0 11.0 150 5-157 13-181 (426)
19 KOG0253|consensus 99.6 8.5E-15 1.8E-19 116.2 8.5 182 6-202 74-273 (528)
20 PRK10213 nepI ribonucleoside t 99.6 2.4E-14 5.2E-19 118.1 11.5 150 5-157 15-183 (394)
21 PRK15403 multidrug efflux syst 99.6 2.5E-14 5.4E-19 118.7 11.2 144 11-157 17-179 (413)
22 PRK15402 multidrug efflux syst 99.6 2.5E-14 5.4E-19 118.2 10.9 150 5-157 8-176 (406)
23 PRK11663 regulatory protein Uh 99.6 6.5E-14 1.4E-18 116.9 12.4 147 8-157 21-186 (434)
24 PRK03893 putative sialic acid 99.5 3.6E-14 7.8E-19 120.1 11.0 149 6-157 16-183 (496)
25 TIGR00711 efflux_EmrB drug res 99.5 1.7E-14 3.6E-19 121.7 8.8 145 11-158 3-166 (485)
26 TIGR00903 2A0129 major facilit 99.5 1.6E-14 3.4E-19 118.1 8.1 146 28-182 9-172 (368)
27 PRK10091 MFS transport protein 99.5 4.9E-14 1.1E-18 115.7 10.0 140 15-157 8-166 (382)
28 PRK10406 alpha-ketoglutarate t 99.5 1.7E-13 3.8E-18 114.3 12.4 96 3-101 15-117 (432)
29 PF07690 MFS_1: Major Facilita 99.5 3.8E-14 8.3E-19 114.2 8.0 139 17-158 3-161 (352)
30 TIGR00710 efflux_Bcr_CflA drug 99.5 1.1E-13 2.3E-18 113.1 10.1 134 21-157 16-168 (385)
31 PRK10504 putative transporter; 99.5 2.2E-13 4.8E-18 114.7 11.8 143 12-157 12-173 (471)
32 PRK03699 putative transporter; 99.5 3.7E-13 8E-18 111.0 12.6 148 7-157 4-171 (394)
33 PRK09952 shikimate transporter 99.5 8.2E-13 1.8E-17 110.4 13.5 161 7-182 19-226 (438)
34 PRK11652 emrD multidrug resist 99.5 4.3E-13 9.4E-18 110.4 11.3 130 25-157 23-171 (394)
35 TIGR00900 2A0121 H+ Antiporter 99.5 1.3E-13 2.9E-18 111.5 7.8 137 18-157 7-167 (365)
36 PRK09705 cynX putative cyanate 99.5 1.5E-12 3.2E-17 107.4 13.8 150 4-157 4-172 (393)
37 PRK11043 putative transporter; 99.5 6.7E-13 1.4E-17 109.5 11.0 129 26-157 22-169 (401)
38 PRK10642 proline/glycine betai 99.4 2.1E-12 4.5E-17 109.5 13.5 159 32-204 272-459 (490)
39 TIGR00893 2A0114 d-galactonate 99.4 2.1E-13 4.5E-18 111.1 6.3 134 21-157 5-157 (399)
40 TIGR00890 2A0111 Oxalate/Forma 99.4 4E-13 8.8E-18 109.0 7.1 138 16-158 10-166 (377)
41 TIGR00899 2A0120 sugar efflux 99.4 1.7E-12 3.6E-17 105.8 10.5 137 18-157 5-164 (375)
42 cd06174 MFS The Major Facilita 99.4 5.6E-12 1.2E-16 101.2 12.9 141 15-158 4-163 (352)
43 TIGR00885 fucP L-fucose:H+ sym 99.4 2.6E-12 5.6E-17 106.6 11.1 142 13-157 6-195 (410)
44 TIGR00881 2A0104 phosphoglycer 99.4 3.8E-13 8.3E-18 109.2 5.8 136 19-157 4-159 (379)
45 PRK15075 citrate-proton sympor 99.4 6.3E-12 1.4E-16 105.0 12.8 149 5-156 10-199 (434)
46 PRK11102 bicyclomycin/multidru 99.4 1.9E-12 4.1E-17 105.7 8.8 129 26-157 7-154 (377)
47 PRK09556 uhpT sugar phosphate 99.4 3.9E-12 8.5E-17 107.2 10.2 147 8-157 27-200 (467)
48 PRK10054 putative transporter; 99.4 1E-11 2.2E-16 102.6 12.2 128 26-157 23-170 (395)
49 TIGR00886 2A0108 nitrite extru 99.4 9.9E-12 2.2E-16 101.0 11.4 125 26-153 17-171 (366)
50 PRK10473 multidrug efflux syst 99.3 5.7E-12 1.2E-16 103.7 9.9 126 29-157 22-166 (392)
51 PRK10133 L-fucose transporter; 99.3 1.2E-11 2.6E-16 103.4 11.9 131 9-142 25-177 (438)
52 PLN00028 nitrate transmembrane 99.3 2.4E-11 5.2E-16 102.7 13.4 137 19-158 45-208 (476)
53 PRK03633 putative MFS family t 99.3 2.1E-11 4.4E-16 100.1 12.4 129 15-146 11-158 (381)
54 PRK09874 drug efflux system pr 99.3 1.5E-11 3.2E-16 101.4 11.0 139 16-157 20-181 (408)
55 KOG1330|consensus 99.3 4E-13 8.6E-18 109.5 1.3 152 5-159 28-199 (493)
56 PRK05122 major facilitator sup 99.3 2.1E-11 4.5E-16 100.6 11.1 138 17-157 22-187 (399)
57 TIGR00892 2A0113 monocarboxyla 99.3 1.4E-11 3.1E-16 103.5 10.3 148 8-158 17-183 (455)
58 PRK10207 dipeptide/tripeptide 99.3 6.6E-11 1.4E-15 100.3 14.1 123 30-155 35-180 (489)
59 PRK11273 glpT sn-glycerol-3-ph 99.3 3.7E-11 8E-16 100.9 12.4 86 8-97 27-113 (452)
60 PRK12382 putative transporter; 99.3 3.2E-11 7E-16 99.2 11.9 129 22-153 27-183 (392)
61 TIGR00894 2A0114euk Na(+)-depe 99.3 1.9E-11 4.1E-16 102.9 10.3 153 6-158 15-208 (465)
62 TIGR00924 yjdL_sub1_fam amino 99.3 2.1E-10 4.5E-15 97.0 15.1 138 20-157 20-180 (475)
63 COG2271 UhpC Sugar phosphate p 99.2 2.1E-11 4.6E-16 98.6 7.5 172 5-185 24-216 (448)
64 TIGR00712 glpT glycerol-3-phos 99.2 1.4E-10 3.1E-15 96.9 12.2 146 9-158 26-195 (438)
65 KOG0252|consensus 99.2 2E-11 4.3E-16 99.6 6.7 94 4-97 35-134 (538)
66 KOG2615|consensus 99.2 2.6E-11 5.6E-16 96.9 7.2 100 44-143 64-181 (451)
67 PTZ00207 hypothetical protein; 99.2 1.6E-10 3.5E-15 99.1 11.0 183 6-204 24-232 (591)
68 PRK11646 multidrug resistance 99.2 4.5E-10 9.7E-15 93.0 12.9 127 27-157 27-173 (400)
69 TIGR00896 CynX cyanate transpo 99.2 5.4E-10 1.2E-14 90.8 11.7 126 27-156 17-162 (355)
70 TIGR00883 2A0106 metabolite-pr 99.1 3.6E-10 7.9E-15 92.2 10.5 81 20-101 3-89 (394)
71 PF06609 TRI12: Fungal trichot 99.1 7E-10 1.5E-14 94.9 12.0 128 26-157 60-205 (599)
72 PRK15462 dipeptide/tripeptide 99.1 2.3E-09 5.1E-14 90.4 14.4 123 31-156 30-176 (493)
73 PRK11195 lysophospholipid tran 99.1 3.8E-10 8.3E-15 93.2 8.2 117 31-151 24-156 (393)
74 PRK09584 tppB putative tripept 99.1 3.4E-09 7.3E-14 90.2 14.1 124 31-157 42-189 (500)
75 PRK15011 sugar efflux transpor 99.1 7.5E-10 1.6E-14 91.3 9.8 134 20-157 25-182 (393)
76 PRK09528 lacY galactoside perm 99.1 1.1E-09 2.5E-14 91.0 10.6 115 43-157 257-391 (420)
77 PRK10489 enterobactin exporter 99.1 4.3E-10 9.4E-15 93.3 8.0 130 25-157 32-185 (417)
78 TIGR00897 2A0118 polyol permea 99.1 2.2E-09 4.8E-14 88.8 11.5 121 30-153 33-177 (402)
79 TIGR00902 2A0127 phenyl propri 99.1 6.5E-10 1.4E-14 91.4 8.1 136 17-155 11-165 (382)
80 COG2223 NarK Nitrate/nitrite t 99.0 4.6E-09 9.9E-14 85.2 12.4 146 5-157 12-181 (417)
81 PRK11128 putative 3-phenylprop 99.0 1.1E-09 2.3E-14 90.0 8.6 134 19-157 13-167 (382)
82 TIGR00890 2A0111 Oxalate/Forma 99.0 4.2E-09 9.2E-14 85.4 10.9 123 32-157 227-370 (377)
83 TIGR00806 rfc RFC reduced fola 99.0 7.8E-09 1.7E-13 86.0 12.3 121 30-154 46-185 (511)
84 TIGR00805 oat sodium-independe 99.0 7.1E-10 1.5E-14 96.7 6.0 79 16-97 39-118 (633)
85 COG0738 FucP Fucose permease [ 99.0 3.8E-09 8.2E-14 85.3 9.6 130 12-144 15-166 (422)
86 PRK11902 ampG muropeptide tran 99.0 3.2E-09 6.9E-14 87.8 9.3 135 18-157 7-170 (402)
87 KOG2532|consensus 99.0 1.3E-09 2.8E-14 91.5 6.8 120 41-160 66-207 (466)
88 PRK03699 putative transporter; 99.0 1.3E-08 2.8E-13 84.0 12.7 123 31-157 226-368 (394)
89 PRK15011 sugar efflux transpor 98.9 2.4E-08 5.2E-13 82.4 13.5 122 32-157 238-379 (393)
90 TIGR00891 2A0112 putative sial 98.9 2.7E-08 5.8E-13 81.7 13.3 112 42-153 268-400 (405)
91 TIGR00901 2A0125 AmpG-related 98.9 9.8E-09 2.1E-13 83.4 10.4 128 25-157 3-166 (356)
92 TIGR00880 2_A_01_02 Multidrug 98.9 1.3E-09 2.7E-14 76.0 4.5 104 54-157 4-126 (141)
93 cd06174 MFS The Major Facilita 98.9 2.3E-08 4.9E-13 80.2 12.2 130 27-158 192-341 (352)
94 PRK11010 ampG muropeptide tran 98.9 1.1E-08 2.4E-13 86.9 10.6 138 15-157 17-183 (491)
95 PRK09528 lacY galactoside perm 98.9 8.3E-09 1.8E-13 85.8 9.4 129 26-157 26-179 (420)
96 KOG3764|consensus 98.9 8.4E-10 1.8E-14 88.8 3.0 147 11-157 22-235 (464)
97 PRK03893 putative sialic acid 98.9 3.3E-08 7.2E-13 83.8 12.5 124 31-157 296-441 (496)
98 PRK15034 nitrate/nitrite trans 98.9 5.7E-08 1.2E-12 81.4 13.4 76 28-105 52-133 (462)
99 PRK09556 uhpT sugar phosphate 98.9 4.4E-08 9.5E-13 82.7 12.9 125 30-157 278-437 (467)
100 PRK03545 putative arabinose tr 98.9 8.9E-08 1.9E-12 78.9 13.7 120 33-157 229-368 (390)
101 COG2814 AraJ Arabinose efflux 98.8 1.3E-07 2.9E-12 77.1 14.0 135 19-157 221-374 (394)
102 TIGR00879 SP MFS transporter, 98.8 5.4E-08 1.2E-12 81.4 12.2 128 27-157 301-458 (481)
103 TIGR00882 2A0105 oligosacchari 98.8 9.7E-09 2.1E-13 84.7 7.4 129 26-158 18-172 (396)
104 PRK08633 2-acyl-glycerophospho 98.8 4.8E-08 1E-12 90.8 12.4 101 44-144 43-165 (1146)
105 PRK03633 putative MFS family t 98.8 7.3E-08 1.6E-12 79.1 12.1 124 31-157 221-360 (381)
106 TIGR00882 2A0105 oligosacchari 98.8 1.2E-07 2.6E-12 78.3 13.0 114 44-157 250-383 (396)
107 TIGR00902 2A0127 phenyl propri 98.8 1.5E-07 3.2E-12 77.4 13.6 121 32-157 227-367 (382)
108 PRK11551 putative 3-hydroxyphe 98.8 1E-07 2.2E-12 78.7 12.5 116 32-150 242-376 (406)
109 PRK10489 enterobactin exporter 98.8 1.3E-07 2.7E-12 78.6 13.0 124 31-157 244-387 (417)
110 TIGR00899 2A0120 sugar efflux 98.8 1.2E-07 2.5E-12 77.3 12.4 115 42-157 229-362 (375)
111 PRK11273 glpT sn-glycerol-3-ph 98.8 1.8E-07 4E-12 78.6 13.8 125 31-157 274-423 (452)
112 PRK09705 cynX putative cyanate 98.8 1.4E-07 3E-12 77.9 12.8 124 31-157 226-369 (393)
113 KOG2533|consensus 98.8 2.2E-08 4.8E-13 84.5 8.1 118 42-159 75-217 (495)
114 PRK12382 putative transporter; 98.8 1.1E-07 2.4E-12 78.3 12.0 122 31-157 237-377 (392)
115 TIGR00889 2A0110 nucleoside tr 98.8 4.2E-08 9E-13 81.8 9.3 112 46-157 249-390 (418)
116 PRK11010 ampG muropeptide tran 98.8 2.4E-07 5.3E-12 78.8 13.6 124 33-159 246-393 (491)
117 PRK09874 drug efflux system pr 98.7 3.2E-07 6.9E-12 75.7 12.7 109 49-157 259-386 (408)
118 PRK06814 acylglycerophosphoeth 98.7 2.6E-07 5.7E-12 86.0 13.2 107 47-153 51-179 (1140)
119 TIGR00897 2A0118 polyol permea 98.7 5.5E-07 1.2E-11 74.5 13.9 123 31-157 243-389 (402)
120 TIGR00889 2A0110 nucleoside tr 98.7 1.7E-07 3.7E-12 78.1 10.5 81 22-105 14-97 (418)
121 PRK05122 major facilitator sup 98.7 4.5E-07 9.7E-12 74.8 13.0 109 49-157 250-377 (399)
122 PRK11902 ampG muropeptide tran 98.7 8.7E-07 1.9E-11 73.3 13.9 122 34-158 234-379 (402)
123 KOG2504|consensus 98.7 4.6E-08 9.9E-13 83.2 6.3 145 9-157 45-209 (509)
124 TIGR00788 fbt folate/biopterin 98.7 3.5E-07 7.5E-12 77.4 11.6 139 14-157 30-197 (468)
125 TIGR01299 synapt_SV2 synaptic 98.6 1.1E-07 2.4E-12 84.1 8.4 107 50-157 597-722 (742)
126 TIGR00893 2A0114 d-galactonate 98.6 5.1E-07 1.1E-11 73.5 11.9 126 29-157 234-387 (399)
127 TIGR00900 2A0121 H+ Antiporter 98.6 3.3E-07 7.1E-12 74.0 10.5 113 31-146 232-365 (365)
128 TIGR01272 gluP glucose/galacto 98.6 8.1E-07 1.8E-11 71.2 11.9 122 32-155 162-301 (310)
129 TIGR00896 CynX cyanate transpo 98.6 9.1E-07 2E-11 71.8 12.3 114 31-147 218-351 (355)
130 PRK10091 MFS transport protein 98.6 8.6E-07 1.9E-11 72.9 12.2 123 32-157 222-364 (382)
131 PRK12307 putative sialic acid 98.6 5.7E-07 1.2E-11 74.8 11.3 116 31-149 252-388 (426)
132 TIGR02718 sider_RhtX_FptX side 98.6 1.4E-06 3.1E-11 71.7 13.5 122 33-157 231-379 (390)
133 PRK11128 putative 3-phenylprop 98.6 1.4E-06 3E-11 71.7 13.1 121 32-157 227-367 (382)
134 TIGR00883 2A0106 metabolite-pr 98.6 7.1E-07 1.5E-11 72.8 11.2 123 30-155 239-387 (394)
135 TIGR01301 GPH_sucrose GPH fami 98.6 7.8E-07 1.7E-11 75.0 11.5 129 6-141 4-175 (477)
136 TIGR00892 2A0113 monocarboxyla 98.6 7.4E-07 1.6E-11 75.1 11.4 124 31-157 262-409 (455)
137 PRK10077 xylE D-xylose transpo 98.6 3.7E-07 7.9E-12 77.1 9.4 123 32-157 293-445 (479)
138 PF05977 MFS_3: Transmembrane 98.5 9.8E-07 2.1E-11 75.4 11.3 125 31-157 239-382 (524)
139 TIGR02718 sider_RhtX_FptX side 98.5 8.3E-07 1.8E-11 73.1 10.4 142 13-157 4-172 (390)
140 PRK11663 regulatory protein Uh 98.5 2.9E-06 6.3E-11 71.0 13.6 124 31-157 264-412 (434)
141 PRK10054 putative transporter; 98.5 1.5E-06 3.2E-11 71.9 11.2 115 42-157 238-372 (395)
142 PF03825 Nuc_H_symport: Nucleo 98.5 1.2E-06 2.6E-11 72.5 10.7 111 24-137 16-144 (400)
143 COG2807 CynX Cyanate permease 98.5 2E-06 4.3E-11 69.0 10.8 144 10-157 12-174 (395)
144 PRK15075 citrate-proton sympor 98.5 5.2E-06 1.1E-10 69.5 13.7 117 31-149 259-399 (434)
145 PRK10213 nepI ribonucleoside t 98.5 6E-06 1.3E-10 68.3 13.7 121 32-157 239-379 (394)
146 PLN00028 nitrate transmembrane 98.5 3.2E-06 7E-11 71.7 12.1 115 42-157 282-421 (476)
147 TIGR00895 2A0115 benzoate tran 98.5 2.3E-06 5E-11 69.9 10.8 108 31-141 271-397 (398)
148 TIGR00792 gph sugar (Glycoside 98.4 6.4E-06 1.4E-10 68.7 13.5 103 46-148 255-384 (437)
149 TIGR00712 glpT glycerol-3-phos 98.4 2.9E-06 6.3E-11 71.1 11.2 124 32-157 273-421 (438)
150 PF06779 DUF1228: Protein of u 98.4 1.3E-06 2.7E-11 55.7 6.8 75 26-103 8-83 (85)
151 PF05977 MFS_3: Transmembrane 98.4 4E-06 8.6E-11 71.8 12.1 145 3-157 10-178 (524)
152 PF05631 DUF791: Protein of un 98.4 8.2E-06 1.8E-10 65.6 13.0 64 42-105 63-126 (354)
153 KOG0569|consensus 98.4 1.1E-05 2.3E-10 68.0 13.8 163 5-179 267-458 (485)
154 PRK10504 putative transporter; 98.4 1E-05 2.2E-10 68.3 13.9 118 29-148 280-419 (471)
155 PRK10473 multidrug efflux syst 98.4 1.3E-05 2.8E-10 66.0 14.2 107 42-151 233-356 (392)
156 TIGR00887 2A0109 phosphate:H+ 98.4 2.1E-06 4.6E-11 73.2 9.6 90 55-144 342-454 (502)
157 COG3104 PTR2 Dipeptide/tripept 98.4 3.9E-06 8.6E-11 69.9 10.5 135 42-187 55-213 (498)
158 PRK09952 shikimate transporter 98.4 1.7E-05 3.6E-10 66.6 14.2 113 42-154 280-418 (438)
159 TIGR02332 HpaX 4-hydroxyphenyl 98.4 2.4E-06 5.3E-11 71.0 9.1 126 30-156 262-408 (412)
160 PRK10133 L-fucose transporter; 98.4 8.4E-06 1.8E-10 68.4 12.4 110 42-153 289-417 (438)
161 TIGR00881 2A0104 phosphoglycer 98.4 4.7E-06 1E-10 67.6 10.5 110 42-151 246-379 (379)
162 TIGR00792 gph sugar (Glycoside 98.3 1.3E-06 2.9E-11 72.8 7.1 65 32-99 22-92 (437)
163 COG2271 UhpC Sugar phosphate p 98.3 5.4E-06 1.2E-10 67.8 10.2 117 42-158 282-423 (448)
164 PRK15402 multidrug efflux syst 98.3 1.5E-05 3.3E-10 65.9 13.3 108 42-149 245-375 (406)
165 PF11700 ATG22: Vacuole efflux 98.3 2.4E-05 5.3E-10 66.3 14.1 116 42-157 311-456 (477)
166 PF12832 MFS_1_like: MFS_1 lik 98.2 7.2E-06 1.6E-10 51.6 7.0 60 26-88 16-75 (77)
167 TIGR00898 2A0119 cation transp 98.2 1.3E-05 2.9E-10 68.2 10.7 100 54-155 361-481 (505)
168 KOG2504|consensus 98.2 9.6E-06 2.1E-10 69.2 9.6 129 26-157 314-464 (509)
169 PRK11646 multidrug resistance 98.2 4.1E-05 9E-10 63.4 12.9 112 32-146 230-361 (400)
170 PF03825 Nuc_H_symport: Nucleo 98.2 4.7E-05 1E-09 63.2 12.9 129 26-157 223-377 (400)
171 KOG4686|consensus 98.2 1.3E-05 2.8E-10 62.7 8.1 109 35-146 290-416 (459)
172 TIGR00711 efflux_EmrB drug res 98.1 3.8E-05 8.3E-10 64.9 11.7 114 31-146 276-412 (485)
173 PF01306 LacY_symp: LacY proto 98.1 2E-05 4.3E-10 65.1 9.4 150 4-157 218-388 (412)
174 TIGR00885 fucP L-fucose:H+ sym 98.1 7.1E-05 1.5E-09 62.3 12.8 112 31-145 253-382 (410)
175 PF01306 LacY_symp: LacY proto 98.1 7E-05 1.5E-09 61.9 11.8 128 26-157 23-176 (412)
176 PRK10406 alpha-ketoglutarate t 98.1 0.00026 5.7E-09 59.2 15.4 54 32-88 265-319 (432)
177 PRK08633 2-acyl-glycerophospho 98.1 9.4E-05 2E-09 69.1 13.8 102 42-143 262-383 (1146)
178 PRK09848 glucuronide transport 98.1 0.00014 3E-09 61.2 13.4 107 42-148 258-392 (448)
179 COG2211 MelB Na+/melibiose sym 98.1 0.00026 5.6E-09 59.4 14.7 121 29-151 255-403 (467)
180 PRK14995 methyl viologen resis 98.0 8.1E-05 1.8E-09 63.5 11.2 103 42-144 289-413 (495)
181 TIGR00710 efflux_Bcr_CflA drug 98.0 0.00021 4.6E-09 58.3 12.7 54 42-95 236-290 (385)
182 PRK10429 melibiose:sodium symp 97.9 0.00024 5.2E-09 60.2 12.9 103 46-148 264-397 (473)
183 KOG2325|consensus 97.9 4.1E-05 8.8E-10 64.3 7.6 87 7-94 31-119 (488)
184 TIGR00788 fbt folate/biopterin 97.8 0.00018 3.8E-09 61.0 10.3 105 42-146 282-415 (468)
185 PRK11195 lysophospholipid tran 97.8 0.00062 1.3E-08 56.3 13.1 114 42-157 235-368 (393)
186 PRK09669 putative symporter Ya 97.8 0.0012 2.7E-08 55.4 14.8 102 47-148 263-392 (444)
187 COG2223 NarK Nitrate/nitrite t 97.8 0.00021 4.5E-09 58.6 9.5 119 32-153 240-385 (417)
188 PF13347 MFS_2: MFS/sugar tran 97.8 0.00036 7.7E-09 58.4 11.2 121 27-150 242-390 (428)
189 PRK06814 acylglycerophosphoeth 97.8 0.0003 6.5E-09 65.9 11.4 120 32-153 247-406 (1140)
190 TIGR00901 2A0125 AmpG-related 97.8 0.0002 4.3E-09 58.2 9.1 64 30-96 229-294 (356)
191 COG2270 Permeases of the major 97.8 0.00034 7.3E-09 57.5 10.0 133 11-147 255-406 (438)
192 COG2807 CynX Cyanate permease 97.7 0.0004 8.7E-09 56.1 10.2 136 5-147 207-362 (395)
193 PRK11102 bicyclomycin/multidru 97.6 0.0012 2.7E-08 53.8 11.9 49 42-90 224-272 (377)
194 COG0738 FucP Fucose permease [ 97.6 0.001 2.2E-08 54.5 10.6 126 28-157 254-397 (422)
195 PRK11462 putative transporter; 97.6 0.0031 6.8E-08 53.4 14.1 103 47-149 262-392 (460)
196 KOG2816|consensus 97.6 0.0021 4.5E-08 54.4 12.5 119 57-182 71-206 (463)
197 KOG0253|consensus 97.6 0.0015 3.2E-08 53.3 10.8 82 57-138 390-490 (528)
198 KOG3762|consensus 97.5 3.2E-05 7E-10 65.1 1.4 139 19-160 380-538 (618)
199 TIGR00894 2A0114euk Na(+)-depe 97.5 0.00046 9.9E-09 58.3 8.1 46 31-78 282-327 (465)
200 PF07690 MFS_1: Major Facilita 97.5 0.00036 7.8E-09 56.0 7.2 65 29-96 225-292 (352)
201 PRK15034 nitrate/nitrite trans 97.5 0.0015 3.2E-08 55.2 10.4 39 54-92 292-330 (462)
202 KOG3764|consensus 97.4 0.00013 2.9E-09 59.4 3.6 131 26-159 286-444 (464)
203 PRK11043 putative transporter; 97.4 0.0075 1.6E-07 49.8 13.8 108 33-144 226-357 (401)
204 PRK09669 putative symporter Ya 97.3 0.0013 2.8E-08 55.3 8.0 63 32-97 32-100 (444)
205 COG0477 ProP Permeases of the 97.3 0.0039 8.5E-08 48.2 10.3 75 22-99 14-91 (338)
206 TIGR00886 2A0108 nitrite extru 97.2 0.0013 2.8E-08 53.4 7.2 54 42-95 255-309 (366)
207 TIGR00903 2A0129 major facilit 97.2 0.011 2.4E-07 48.6 12.5 117 32-157 214-353 (368)
208 PF06813 Nodulin-like: Nodulin 97.2 0.007 1.5E-07 46.9 10.6 82 9-95 2-84 (250)
209 PRK10429 melibiose:sodium symp 97.0 0.0072 1.6E-07 51.3 10.2 64 26-92 22-91 (473)
210 TIGR00926 2A1704 Peptide:H+ sy 97.0 0.018 4E-07 50.9 12.8 128 27-157 5-170 (654)
211 PF13347 MFS_2: MFS/sugar tran 97.0 0.00089 1.9E-08 56.0 4.5 63 32-97 24-92 (428)
212 KOG0254|consensus 97.0 0.016 3.4E-07 49.8 11.7 46 51-96 332-378 (513)
213 KOG2563|consensus 96.9 0.0073 1.6E-07 50.3 8.9 91 3-97 38-129 (480)
214 KOG3762|consensus 96.8 0.0016 3.5E-08 55.2 4.3 78 17-97 18-97 (618)
215 KOG2532|consensus 96.8 0.0054 1.2E-07 52.0 7.3 143 13-157 261-435 (466)
216 PRK11652 emrD multidrug resist 96.8 0.049 1.1E-06 44.8 12.9 39 42-80 237-275 (394)
217 PF03092 BT1: BT1 family; Int 96.6 0.026 5.6E-07 47.5 10.4 122 31-157 11-163 (433)
218 KOG0252|consensus 96.6 0.003 6.6E-08 52.7 4.6 117 59-182 359-504 (538)
219 KOG2533|consensus 96.6 0.02 4.4E-07 48.9 9.7 73 18-92 281-357 (495)
220 PF05978 UNC-93: Ion channel r 96.6 0.07 1.5E-06 38.3 10.9 72 31-103 21-92 (156)
221 PRK15403 multidrug efflux syst 96.0 0.67 1.5E-05 38.6 15.5 121 32-155 240-383 (413)
222 PRK11462 putative transporter; 95.9 0.062 1.3E-06 45.5 8.9 57 33-92 33-94 (460)
223 PF00083 Sugar_tr: Sugar (and 95.9 3.5E-05 7.5E-10 64.6 -10.8 109 33-146 276-413 (451)
224 TIGR00924 yjdL_sub1_fam amino 95.9 0.16 3.6E-06 43.2 11.4 47 50-96 314-368 (475)
225 PF01770 Folate_carrier: Reduc 95.8 0.44 9.6E-06 39.7 13.1 102 42-143 34-154 (412)
226 PF03137 OATP: Organic Anion T 95.7 0.0027 5.8E-08 54.8 0.0 75 18-95 11-86 (539)
227 COG2270 Permeases of the major 95.6 0.33 7.1E-06 40.5 11.4 54 46-99 56-111 (438)
228 PRK09848 glucuronide transport 95.5 0.088 1.9E-06 44.3 8.4 56 34-92 33-93 (448)
229 KOG4686|consensus 95.4 0.014 3E-07 46.2 2.9 138 7-147 41-201 (459)
230 PRK09584 tppB putative tripept 95.4 0.56 1.2E-05 40.3 12.9 96 50-145 318-441 (500)
231 PF03209 PUCC: PUCC protein; 94.8 1.7 3.6E-05 36.2 13.4 103 42-144 238-363 (403)
232 PF03209 PUCC: PUCC protein; 94.8 0.25 5.4E-06 40.9 8.6 110 42-152 9-159 (403)
233 TIGR01272 gluP glucose/galacto 94.5 2 4.2E-05 34.4 13.2 44 114-157 174-217 (310)
234 KOG0255|consensus 94.1 0.12 2.6E-06 44.4 5.7 65 118-187 118-186 (521)
235 TIGR00805 oat sodium-independe 94.0 0.21 4.5E-06 44.2 7.1 59 32-92 352-413 (633)
236 KOG0637|consensus 93.9 0.029 6.3E-07 46.9 1.4 64 42-105 61-130 (498)
237 PRK10207 dipeptide/tripeptide 93.6 2.2 4.8E-05 36.6 12.5 43 50-92 311-360 (489)
238 KOG2563|consensus 93.6 0.56 1.2E-05 39.5 8.4 50 42-91 295-345 (480)
239 COG2211 MelB Na+/melibiose sym 93.5 2.4 5.3E-05 36.1 12.2 62 34-98 37-104 (467)
240 PF06609 TRI12: Fungal trichot 93.5 0.58 1.2E-05 41.1 8.6 48 48-95 349-398 (599)
241 PF03092 BT1: BT1 family; Int 93.2 1.1 2.4E-05 37.8 9.9 104 44-147 251-383 (433)
242 KOG3626|consensus 92.9 0.28 6.1E-06 43.8 5.9 82 12-96 99-181 (735)
243 TIGR00806 rfc RFC reduced fola 92.8 0.45 9.7E-06 40.6 6.8 73 112-187 55-130 (511)
244 TIGR01301 GPH_sucrose GPH fami 92.5 6.2 0.00013 33.8 13.7 45 51-95 308-354 (477)
245 KOG2816|consensus 92.4 2.2 4.8E-05 36.4 10.5 103 41-143 270-391 (463)
246 PRK03612 spermidine synthase; 91.9 7 0.00015 33.9 13.1 114 44-157 46-185 (521)
247 PF11700 ATG22: Vacuole efflux 91.8 4.8 0.0001 34.5 11.9 49 48-96 70-120 (477)
248 KOG1330|consensus 91.5 0.53 1.1E-05 39.8 5.6 71 113-186 63-135 (493)
249 KOG2615|consensus 91.1 0.96 2.1E-05 37.5 6.6 111 41-151 290-422 (451)
250 KOG1237|consensus 90.2 8.6 0.00019 33.8 12.1 128 27-157 55-233 (571)
251 PRK15462 dipeptide/tripeptide 89.4 1.7 3.8E-05 37.3 7.2 44 114-157 41-85 (493)
252 TIGR00880 2_A_01_02 Multidrug 89.3 1.8 3.8E-05 29.1 6.2 47 46-92 85-131 (141)
253 PTZ00207 hypothetical protein; 88.8 3 6.4E-05 36.8 8.3 51 114-168 58-108 (591)
254 PF12832 MFS_1_like: MFS_1 lik 86.4 2 4.3E-05 26.8 4.4 43 113-155 30-72 (77)
255 KOG4332|consensus 86.2 1.3 2.8E-05 35.2 4.1 64 42-105 66-129 (454)
256 KOG3574|consensus 86.0 1.4 3.1E-05 36.6 4.4 126 11-142 32-189 (510)
257 TIGR00769 AAA ADP/ATP carrier 84.3 23 0.00051 30.4 11.1 53 45-97 40-94 (472)
258 KOG3098|consensus 80.1 13 0.00029 31.7 8.1 50 54-103 56-106 (461)
259 PF06779 DUF1228: Protein of u 74.5 14 0.0003 23.5 5.3 45 113-157 22-66 (85)
260 COG3619 Predicted membrane pro 72.9 40 0.00087 25.8 13.0 75 3-77 5-84 (226)
261 PF06813 Nodulin-like: Nodulin 70.8 11 0.00024 29.4 5.0 51 114-168 33-83 (250)
262 PF05631 DUF791: Protein of un 66.2 30 0.00066 28.4 6.8 44 114-157 65-108 (354)
263 PF13000 Acatn: Acetyl-coenzym 66.1 17 0.00037 31.5 5.5 126 15-141 5-173 (544)
264 PF00854 PTR2: POT family; In 65.3 24 0.00052 28.9 6.3 52 48-99 72-124 (372)
265 PF06963 FPN1: Ferroportin1 (F 64.7 47 0.001 28.2 7.9 55 31-88 279-333 (432)
266 PF00854 PTR2: POT family; In 57.8 26 0.00057 28.7 5.2 37 121-157 75-111 (372)
267 PF02487 CLN3: CLN3 protein; 56.6 36 0.00079 28.6 5.8 104 53-157 64-183 (402)
268 COG5336 Uncharacterized protei 55.0 56 0.0012 21.9 5.2 43 50-92 44-87 (116)
269 KOG3098|consensus 54.9 91 0.002 26.8 8.0 49 49-97 280-332 (461)
270 PF03137 OATP: Organic Anion T 54.5 4.1 8.9E-05 35.5 0.0 70 20-91 315-387 (539)
271 PF02694 UPF0060: Uncharacteri 47.5 43 0.00094 22.3 3.9 51 48-98 54-105 (107)
272 PRK02237 hypothetical protein; 45.6 65 0.0014 21.6 4.5 51 48-98 56-107 (109)
273 PF01770 Folate_carrier: Reduc 43.7 87 0.0019 26.5 6.1 62 44-105 281-345 (412)
274 PF10749 DUF2534: Protein of u 42.8 85 0.0018 19.8 4.7 35 3-37 9-43 (85)
275 PF06963 FPN1: Ferroportin1 (F 42.3 2.2E+02 0.0047 24.3 11.8 107 51-157 41-188 (432)
276 PF13493 DUF4118: Domain of un 41.6 86 0.0019 20.2 4.9 24 55-78 82-105 (105)
277 PF06912 DUF1275: Protein of u 41.6 1.5E+02 0.0032 22.1 9.4 25 123-147 167-191 (209)
278 COG1268 BioY Uncharacterized c 41.2 81 0.0017 23.4 5.0 23 55-77 89-111 (184)
279 KOG2325|consensus 40.8 1.1E+02 0.0023 26.6 6.3 114 67-187 22-145 (488)
280 KOG3626|consensus 40.5 61 0.0013 29.6 5.0 65 26-92 408-475 (735)
281 PF05978 UNC-93: Ion channel r 37.9 1.5E+02 0.0032 21.2 8.0 29 129-157 48-76 (156)
282 PF02632 BioY: BioY family; I 35.7 89 0.0019 22.2 4.4 26 54-79 59-84 (148)
283 KOG3097|consensus 30.8 1.3E+02 0.0028 24.9 5.0 48 45-92 307-354 (390)
284 PF07672 MFS_Mycoplasma: Mycop 27.7 2.3E+02 0.0049 22.5 5.7 37 48-84 141-177 (267)
285 PRK03612 spermidine synthase; 27.3 3.2E+02 0.0069 23.9 7.2 42 46-87 143-185 (521)
286 KOG0637|consensus 26.0 3E+02 0.0065 23.9 6.5 52 52-103 336-388 (498)
287 TIGR02230 ATPase_gene1 F0F1-AT 23.6 2.3E+02 0.0049 18.7 5.7 33 60-92 54-87 (100)
288 PF08566 Pam17: Mitochondrial 23.1 3E+02 0.0066 20.2 5.3 35 43-77 72-108 (173)
289 KOG3574|consensus 21.4 2E+02 0.0043 24.6 4.5 46 106-151 393-438 (510)
290 PRK13108 prolipoprotein diacyl 21.3 5.4E+02 0.012 22.2 8.0 34 44-77 17-50 (460)
291 PRK10621 hypothetical protein; 21.1 4E+02 0.0086 20.7 6.2 20 129-148 214-233 (266)
292 KOG1484|consensus 20.7 2.5E+02 0.0053 23.1 4.8 65 132-202 221-285 (354)
293 PF03219 TLC: TLC ATP/ADP tran 20.7 5.7E+02 0.012 22.3 7.6 88 3-94 278-366 (491)
No 1
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.83 E-value=4e-20 Score=161.51 Aligned_cols=186 Identities=14% Similarity=0.102 Sum_probs=146.5
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHH
Q psy3292 5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST 84 (213)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~ 84 (213)
.+.+|.+.+++.++.+..|+|....+.++|.+.+ +++.++.+.+++.+++.+|.++|++++|+++||+|||++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~---~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~ 238 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEK---DLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLIC 238 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 4667888888899999999999999999999988 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHh
Q psy3292 85 ATLSAFSV-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI 145 (213)
Q Consensus 85 ~~~~~~~~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~ 145 (213)
.++..++. +.+++++++.+.+ ...+..|...+....+.+.....+|..+++.++..+...+
T Consensus 239 lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~ 318 (742)
T TIGR01299 239 LSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHY 318 (742)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999 8889888877655 1222333333333445566667788888887777666544
Q ss_pred -------------ccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhccc
Q psy3292 146 -------------GRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRKKHKSSLVRLEG 204 (213)
Q Consensus 146 -------------g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g~~~g~~~~~~~a~~~l~~~~~ 204 (213)
+||+.+++.+++++ +..+..+++||||+|+ +.+| +.++|.+.++++++
T Consensus 319 G~~~~~g~~~~~~gWR~l~~i~~lp~l-------l~ll~~~~lPESPrwL-~~~g---r~~eA~~iL~~i~~ 379 (742)
T TIGR01299 319 GWSFQMGSAYQFHSWRVFVIVCAFPCV-------FAIGALTFMPESPRFF-LENG---KHDEAWMILKLIHD 379 (742)
T ss_pred cchhccccccccccHHHHHHHHHHHHH-------HHHHHHHHcCCCHHHH-HHCC---CHHHHHHHHHHHhc
Confidence 46777666655522 2223345569999999 9999 89999999988754
No 2
>KOG0569|consensus
Probab=99.79 E-value=6.4e-19 Score=146.19 Aligned_cols=193 Identities=22% Similarity=0.205 Sum_probs=136.4
Q ss_pred chhHHHHHHHHHHHHHHHHhhcccccchhhhhhhhC-------CCCCCCCChh----hHHHHHHHHHHHHhhhhhhhHHh
Q psy3292 3 SGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVS-------PDSPVPMSED----ESSWVVASMEFGCWAIPFFAGML 71 (213)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~~s~~----~~~~~~s~~~~g~~ig~~~~g~l 71 (213)
..+++....+..++++.+.+||+.+..++..+.+.+ ++++...+++ ..+..++++.+|.++|++..+.+
T Consensus 4 ~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~l 83 (485)
T KOG0569|consen 4 KLTRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLL 83 (485)
T ss_pred CccHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677778888888889999999999987754444 2444445554 45777889999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHHH-Hhhhc---CchhHHHH----------hcCCCCCCCCCcchh----hHHHHHHHHHHHH
Q psy3292 72 CDRIGRKWTLLSTATLSAFSV-GQTFG---WSSPVLAY----------LVSPDSPVPMSEDES----SWVVASMEFGCWA 133 (213)
Q Consensus 72 ~d~~Grr~~~~~~~~~~~~~~-~~~~~---~~~~~l~~----------~~~~~~~~~~~~~~~----~~~~~~~~lg~~~ 133 (213)
+||+|||.+++++.++..++. ...++ ++++++.. +.....|.++.|.+| |...++..++..+
T Consensus 84 a~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~ 163 (485)
T KOG0569|consen 84 ADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVI 163 (485)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHH
Confidence 999999999999999988888 66554 44444444 233344556666655 3444445555555
Q ss_pred HHHHHHHHH------hHhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhh-cCcccccccchhhhhhccccc
Q psy3292 134 IPFFAGMLC------DRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLS-TGMLCDRKKHKSSLVRLEGSA 206 (213)
Q Consensus 134 g~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g~~-~g~~~~~~~a~~~l~~~~~~~ 206 (213)
|.+++..++ +...|++.+....+++ ++..+.+.++||||+|+ +. +| |+|||+++++++||.+
T Consensus 164 g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~-------~~~l~~l~~~PESPk~L-l~~k~---~~~~A~~sl~~y~G~~ 232 (485)
T KOG0569|consen 164 GILLGQVLGLPSLLGTEDLWPYLLAFPLIPA-------LLQLALLPFLPESPKYL-LIKKG---DEEEARKALKFYRGKE 232 (485)
T ss_pred HHHHHHHHccHHhcCCCcchHHHHHHHHHHH-------HHHHHHHhcCCCCcchH-HHHcC---CHHHHHHHHHHHhCCC
Confidence 555553333 2334666666666553 33344455669999999 65 89 9999999999999874
No 3
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.78 E-value=2e-18 Score=146.52 Aligned_cols=187 Identities=17% Similarity=0.066 Sum_probs=136.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCC--CCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHH
Q psy3292 5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSP--DSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLL 82 (213)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~ 82 (213)
.+.++.++.++.++.+.+|+|.+..+...|.+.+. ..+.+.++.+.+++.+.+.+|..+++++.|+++||+|||+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~ 90 (502)
T TIGR00887 11 GWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYG 90 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 56778888999999999999999999988877541 1123456677899999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HhhhcCc------hhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Q psy3292 83 STATLSAFSV-GQTFGWS------SPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFF 137 (213)
Q Consensus 83 ~~~~~~~~~~-~~~~~~~------~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~ 137 (213)
.+.++..++. ..+++++ ...+.+ ...+..|...+....+.......+|..+++.+
T Consensus 91 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~ 170 (502)
T TIGR00887 91 MELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIV 170 (502)
T ss_pred HHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988 8777765 333333 23334444444444555666677777777777
Q ss_pred HHHHHh-----------------------HhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccc-
Q psy3292 138 AGMLCD-----------------------RIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRK- 193 (213)
Q Consensus 138 ~g~l~~-----------------------~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g~~~g~~~~~~- 193 (213)
+..+.. .++||+.+.+..++++ +..+..+++||||+|+ +.+| ++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~-------i~~~~~~~lpESpr~l-~~~~---~~~~ 239 (502)
T TIGR00887 171 ALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPAL-------LALYFRLTIPETPRYT-ADVA---KDVE 239 (502)
T ss_pred HHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHH-------HHHHHHHhCCCCHHHH-HHhC---cchH
Confidence 665532 1379999987776632 2222345559999999 9888 553
Q ss_pred cchhhhhhc
Q psy3292 194 KHKSSLVRL 202 (213)
Q Consensus 194 ~a~~~l~~~ 202 (213)
++++.++++
T Consensus 240 ~a~~~~~~~ 248 (502)
T TIGR00887 240 QAASDMSAV 248 (502)
T ss_pred HHHHHHHHH
Confidence 456555554
No 4
>KOG0254|consensus
Probab=99.76 E-value=1e-17 Score=142.52 Aligned_cols=189 Identities=24% Similarity=0.223 Sum_probs=141.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcc--cccchhhhhhhhCC--CCCCCCCh--hhHHHHHHHHHHHHhhhhhhhHHhhhhhchh
Q psy3292 5 TTRQILAGMSATLSAFSVGQT--FGWSSPVLAYLVSP--DSPVPMSE--DESSWVVASMEFGCWAIPFFAGMLCDRIGRK 78 (213)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~--~~~~~~s~--~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr 78 (213)
+......+..+.++.+.+|++ .++.++..+.+.+. ..+...+. .+.+|+.+...+|..+|+++.|+++|++|||
T Consensus 40 ~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk 119 (513)
T KOG0254|consen 40 SPFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRK 119 (513)
T ss_pred ceehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 456778889999999999998 77888888777661 11222222 4569999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HhhhcCchhHHHH----------hcCCCCCCCCCcchh----hHHHHHHHHHHHHHHHHHHHH--
Q psy3292 79 WTLLSTATLSAFSV-GQTFGWSSPVLAY----------LVSPDSPVPMSEDES----SWVVASMEFGCWAIPFFAGML-- 141 (213)
Q Consensus 79 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~----------~~~~~~~~~~~~~~~----~~~~~~~~lg~~~g~~~~g~l-- 141 (213)
++++++.+++.+++ +.++++|..++.+ ......|.+.+|..+ +.+.+...+...+|.+++..+
T Consensus 120 ~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~ 199 (513)
T KOG0254|consen 120 KTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINY 199 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999 9999999999887 344456666666554 444444444444444443222
Q ss_pred -HhH--hccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhccc
Q psy3292 142 -CDR--IGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRKKHKSSLVRLEG 204 (213)
Q Consensus 142 -~~~--~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g~~~g~~~~~~~a~~~l~~~~~ 204 (213)
.+. ++||..+.+..++++ ++....+++||||+|+ +.+| +.++++++++++++
T Consensus 200 ~~~~~~~~Wr~~~~~~~i~~~-------~~~~~~~~~pesp~~L-~~~g---~~~~a~~~l~~l~g 254 (513)
T KOG0254|consen 200 GTSKVYAGWRIPLGLALIPAV-------ILALGMLFLPESPRWL-IEKG---RLEEAKRSLKRLRG 254 (513)
T ss_pred hhccCCccHHHHHHHHHHHHH-------HHHHHHHhCCCChHHH-HHcC---ChHHHHHHHHHHhC
Confidence 222 379977777776643 2222366679999999 9999 99999999999998
No 5
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.75 E-value=1.7e-17 Score=139.73 Aligned_cols=187 Identities=17% Similarity=0.208 Sum_probs=129.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhC-----CCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhH
Q psy3292 5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVS-----PDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKW 79 (213)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~ 79 (213)
.+....++..+.++.+.+|+|.+.+++..|.+.+ ...+++.++.+.++..+.+.+|..+++++.|+++||+|||+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~ 86 (479)
T PRK10077 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (479)
T ss_pred chHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 4567778888889999999999999999988877 11234788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-Hhhhc---------Cc---hhHHHH------------------hcCCCCCCCCCcchhhHHHHHHH
Q psy3292 80 TLLSTATLSAFSV-GQTFG---------WS---SPVLAY------------------LVSPDSPVPMSEDESSWVVASME 128 (213)
Q Consensus 80 ~~~~~~~~~~~~~-~~~~~---------~~---~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~ 128 (213)
+++++..++.++. ..++. ++ ...+++ ...+..|...+....+.......
T Consensus 87 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~ 166 (479)
T PRK10077 87 SLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAII 166 (479)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHH
Confidence 9999999988887 66653 12 222222 22233333333333344444455
Q ss_pred HHHHHHHHHHHHHH--------hHhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhh
Q psy3292 129 FGCWAIPFFAGMLC--------DRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRKKHKSSLV 200 (213)
Q Consensus 129 lg~~~g~~~~g~l~--------~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g~~~g~~~~~~~a~~~l~ 200 (213)
+|..+++++++.+. +.+|||+.+++.+++.+ + .+ ...+++||+|+++ ..++ ++|++++.++
T Consensus 167 ~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~---~--~~--~~~~~l~~s~~~l-~~~~---~~~~~~~~~~ 235 (479)
T PRK10077 167 FGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPAL---L--FL--MLLYFVPETPRYL-MSRG---KQEQAEGILR 235 (479)
T ss_pred HHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHH---H--HH--HHHHcCCCCcHHH-HHcC---CHHHHHHHHH
Confidence 56665555544443 35699999988766632 1 11 1233459999998 6666 5666555444
Q ss_pred hc
Q psy3292 201 RL 202 (213)
Q Consensus 201 ~~ 202 (213)
+.
T Consensus 236 ~~ 237 (479)
T PRK10077 236 KI 237 (479)
T ss_pred HH
Confidence 44
No 6
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.72 E-value=6.8e-20 Score=153.22 Aligned_cols=182 Identities=22% Similarity=0.226 Sum_probs=128.6
Q ss_pred HHHHHHHHHhhcccccchhhhhhhhC--------CCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHH
Q psy3292 13 MSATLSAFSVGQTFGWSSPVLAYLVS--------PDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST 84 (213)
Q Consensus 13 ~~~~~~~~~~g~~~~~~~~~~~~~~~--------~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~ 84 (213)
+.+.++.+.+|+|.+..+...+.... .+.+.+.++.+.++..+...+|..+|+++.|+++||+|||++++++
T Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~ 82 (451)
T PF00083_consen 3 LIASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIIS 82 (451)
T ss_pred EeeHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccc
Confidence 34567789999999999877754442 0111111345789999999999999999999999999999999999
Q ss_pred HHHHHHHH-HhhhcC---chhHHHH----------hcCCCCCCCCCcch----hhHHHHHH----HHHHHHHHHHHHHHH
Q psy3292 85 ATLSAFSV-GQTFGW---SSPVLAY----------LVSPDSPVPMSEDE----SSWVVASM----EFGCWAIPFFAGMLC 142 (213)
Q Consensus 85 ~~~~~~~~-~~~~~~---~~~~l~~----------~~~~~~~~~~~~~~----~~~~~~~~----~lg~~~g~~~~g~l~ 142 (213)
.++..++. +.++++ |++.+.+ ......+.+..|.. ++...+.. .+|..++..+...+.
T Consensus 83 ~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~ 162 (451)
T PF00083_consen 83 ALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVS 162 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999 999999 8777766 12223344444443 23333333 444444444433333
Q ss_pred hH---hccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhcccc
Q psy3292 143 DR---IGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRKKHKSSLVRLEGS 205 (213)
Q Consensus 143 ~~---~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g~~~g~~~~~~~a~~~l~~~~~~ 205 (213)
+. .+||..+....++++. .+. ..+++||||+|+ +.+| |+|||++++++++++
T Consensus 163 ~~~~~~~Wr~~~~~~~~~~l~-----~~~--~~~~~pESP~wL-~~~~---~~~~A~~~l~~~~~~ 217 (451)
T PF00083_consen 163 YYSDNWGWRILLIFGAIPSLL-----VLL--LRFFLPESPRWL-LSKG---RDEEAEKVLRKLRGK 217 (451)
T ss_pred ccccccccccccccccccccc-----ccc--ccccccccccee-cccc---ccccccccccccccc
Confidence 32 3499999888888542 122 234459999999 9999 999999999997644
No 7
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.72 E-value=1.2e-16 Score=129.28 Aligned_cols=153 Identities=19% Similarity=0.158 Sum_probs=140.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHH
Q psy3292 4 GTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLS 83 (213)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~ 83 (213)
+++..+......+++.|..|.++..+.+.+|++.+ |+++|+...|++.+.|.++..+++++...++||+.||+.++.
T Consensus 7 ~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~---dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~ 83 (394)
T COG2814 7 ARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAA---DLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLG 83 (394)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHH
Confidence 35566777888889999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy3292 84 TATLSAFSV-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR 144 (213)
Q Consensus 84 ~~~~~~~~~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~ 144 (213)
...++.+++ ..++++|++.+.+ ......|...+....+.+.+..+++..+|.+++.++.|.
T Consensus 84 ~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~ 163 (394)
T COG2814 84 LLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL 163 (394)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999999 9999999999887 345567777788888999999999999999999999999
Q ss_pred hccchhhhhhcccch
Q psy3292 145 IGRKWTLLSTGMLCD 159 (213)
Q Consensus 145 ~g~~~~~~~~~~~~~ 159 (213)
+|||.+|+.....++
T Consensus 164 ~GWR~~F~~ia~l~l 178 (394)
T COG2814 164 FGWRATFLAIAVLAL 178 (394)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999998877754
No 8
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.69 E-value=7e-17 Score=133.87 Aligned_cols=149 Identities=9% Similarity=-0.049 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHH
Q psy3292 7 RQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTAT 86 (213)
Q Consensus 7 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~ 86 (213)
..+.....+.++.+.+.+|....+...|.+.+ +++.++++.++..+++.++..+++++.|+++||+|||+++..+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~ 81 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGK---DLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMV 81 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHh---hcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHH
Confidence 34556677777778889999999999999988 999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh----
Q psy3292 87 LSAFSV-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD---- 143 (213)
Q Consensus 87 ~~~~~~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~---- 143 (213)
+..++. ..++++|.+.+.+ ...+..|...+....+.......+|..+++++++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 161 (412)
T TIGR02332 82 LWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL 161 (412)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999 9999999887766 01111121122223345555667788888888888764
Q ss_pred --Hhccchhhhhhcccc
Q psy3292 144 --RIGRKWTLLSTGMLC 158 (213)
Q Consensus 144 --~~g~~~~~~~~~~~~ 158 (213)
..|||+.+++.++++
T Consensus 162 ~~~~gwr~~f~~~~~~~ 178 (412)
T TIGR02332 162 MALKGWQWLFLLEGFPS 178 (412)
T ss_pred CCccchhHHHHHHHHHH
Confidence 469999999877663
No 9
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.69 E-value=2.9e-16 Score=128.98 Aligned_cols=152 Identities=14% Similarity=0.126 Sum_probs=124.9
Q ss_pred chhHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHH
Q psy3292 3 SGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLL 82 (213)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~ 82 (213)
+.++++|.......++.+.++++....++..|.+.+ +++.++.+.+++.+.+.++..+++++.|.++||+|||+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~ 81 (405)
T TIGR00891 5 HLTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAG---EFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMV 81 (405)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 446677888888889999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3292 83 STATLSAFSV-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD 143 (213)
Q Consensus 83 ~~~~~~~~~~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~ 143 (213)
++.++..++. ...+.++++.+.. ...+..|...+....+.......+|..+++.+.+.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~ 161 (405)
T TIGR00891 82 TSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP 161 (405)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 8888888877655 11122222233334466666778889999999998888
Q ss_pred Hhc--cchhhhhhccc
Q psy3292 144 RIG--RKWTLLSTGML 157 (213)
Q Consensus 144 ~~g--~~~~~~~~~~~ 157 (213)
..| ||+.+.+..++
T Consensus 162 ~~~~~w~~~f~~~~~~ 177 (405)
T TIGR00891 162 VWGDGWRALFFISILP 177 (405)
T ss_pred hcCccHHHHHHHHHHH
Confidence 876 99988765544
No 10
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.66 E-value=5.8e-16 Score=131.27 Aligned_cols=148 Identities=18% Similarity=0.115 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHH
Q psy3292 7 RQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTAT 86 (213)
Q Consensus 7 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~ 86 (213)
+++.+...+.++.+....|....+..+|.+.+ +++.++++.+|..+.+.++..++.++.|+++||+|||+.++.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~---~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~ 79 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSM---TLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGT 79 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 35667888888999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HhhhcCchhHHHH-----------h-------c-CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc
Q psy3292 87 LSAFSV-GQTFGWSSPVLAY-----------L-------V-SPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG 146 (213)
Q Consensus 87 ~~~~~~-~~~~~~~~~~l~~-----------~-------~-~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g 146 (213)
++.++. .+++++|.+.+.+ . . ....|...+....+.......+|..+||.+++++.++.|
T Consensus 80 ~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g 159 (495)
T PRK14995 80 LFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY 159 (495)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 999999 9999999888766 0 0 001111122223356667788899999999999999999
Q ss_pred cchhhhhhccc
Q psy3292 147 RKWTLLSTGML 157 (213)
Q Consensus 147 ~~~~~~~~~~~ 157 (213)
||+.+++....
T Consensus 160 wr~~f~i~~~~ 170 (495)
T PRK14995 160 WGSVFLINVPI 170 (495)
T ss_pred hHHHHHHHHHH
Confidence 99999887655
No 11
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.65 E-value=1.2e-15 Score=125.96 Aligned_cols=170 Identities=17% Similarity=0.185 Sum_probs=131.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHH
Q psy3292 4 GTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLS 83 (213)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~ 83 (213)
..+++|.+...+.+..+.+++|....+...|.+.+ +++.++++.+++.+.+.++..+++++.|+++||+|||+++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 85 (406)
T PRK11551 9 SSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQ---EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIV 85 (406)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 45688888899999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy3292 84 TATLSAFSV-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR 144 (213)
Q Consensus 84 ~~~~~~~~~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~ 144 (213)
+.++..++. ...+.++.+.+.+ ...+..|...+....+.......+|..+++.+++.+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 165 (406)
T PRK11551 86 SVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD 165 (406)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 999988888 8888888877655 111122222223333555566677888888888888888
Q ss_pred hccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHH
Q psy3292 145 IGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWT 182 (213)
Q Consensus 145 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~ 182 (213)
.+||+.+++.+++.+ ........+.||+|...
T Consensus 166 ~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~ 197 (406)
T PRK11551 166 AAWRHIFYVGGVGPL------LLVPLLMRWLPESRAFA 197 (406)
T ss_pred cCHHHHHHHHHHHHH------HHHHHHHHhCCCChhHH
Confidence 899998887665422 11111223348888765
No 12
>PRK03545 putative arabinose transporter; Provisional
Probab=99.63 E-value=2.9e-15 Score=123.25 Aligned_cols=150 Identities=15% Similarity=0.110 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHH
Q psy3292 6 TRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTA 85 (213)
Q Consensus 6 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~ 85 (213)
+++|.....+.++.+....+.....+..|.+.+ +++.++++.++..+.+.++..+++++.|++.||+|||+.+..+.
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 81 (390)
T PRK03545 5 KVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQ---SFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLF 81 (390)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHcchHHHHh---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 334444444455555554444455667899998 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc
Q psy3292 86 TLSAFSV-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG 146 (213)
Q Consensus 86 ~~~~~~~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g 146 (213)
.+..++. ...+++|++.+.+ ...+..|...+....+.......+|..+|+++++.+.+.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g 161 (390)
T PRK03545 82 VLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG 161 (390)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 9999999 9999999888766 11122233333444566777788899999999999999999
Q ss_pred cchhhhhhcccc
Q psy3292 147 RKWTLLSTGMLC 158 (213)
Q Consensus 147 ~~~~~~~~~~~~ 158 (213)
||+.+++.++++
T Consensus 162 w~~~f~~~~~~~ 173 (390)
T PRK03545 162 WRTTFLAIGGGA 173 (390)
T ss_pred HHHHHHHHHHHH
Confidence 999998877663
No 13
>KOG0255|consensus
Probab=99.62 E-value=7.9e-16 Score=131.20 Aligned_cols=148 Identities=18% Similarity=0.111 Sum_probs=112.2
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH--------------h
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY--------------L 106 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~--------------~ 106 (213)
.+..+.....+..+++.+|.++|+++.|+++||+|||++++.+.++..++. ..++++|++.+.+ .
T Consensus 112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~ 191 (521)
T KOG0255|consen 112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTV 191 (521)
T ss_pred eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHH
Confidence 556788899999999999999999999999999999999999999999999 9999999999887 0
Q ss_pred cCCCCCCCCCcchhhHH---HHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3292 107 VSPDSPVPMSEDESSWV---VASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTL 183 (213)
Q Consensus 107 ~~~~~~~~~~~~~~~~~---~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g 183 (213)
..........++.++.. ......++.+++..++++.. +||+.+++..+++++ .+.. .++.||||||+
T Consensus 192 ~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~-----~~~~--~~l~~Es~rwl- 261 (521)
T KOG0255|consen 192 GFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGL-----FLLL--WFLPPESPRWL- 261 (521)
T ss_pred hHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHH-----HHHH--HHccCcChHHH-
Confidence 00111122333333332 33445566666677777766 899999998888542 1111 33336999999
Q ss_pred hhcCcccccccchhhhhhc
Q psy3292 184 LSTGMLCDRKKHKSSLVRL 202 (213)
Q Consensus 184 ~~~g~~~~~~~a~~~l~~~ 202 (213)
+.+| +.++|.+.+++.
T Consensus 262 ~~~g---~~~~a~~~l~~~ 277 (521)
T KOG0255|consen 262 LSKG---RIDEAIKILKKI 277 (521)
T ss_pred HHcC---chHHHHHHHHHH
Confidence 9999 888888888875
No 14
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.62 E-value=3.4e-15 Score=124.73 Aligned_cols=174 Identities=22% Similarity=0.219 Sum_probs=123.6
Q ss_pred chhHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCC--------CChhhHHHHHHHHHHHHhhhhhhhHHhhhh
Q psy3292 3 SGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVP--------MSEDESSWVVASMEFGCWAIPFFAGMLCDR 74 (213)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~ 74 (213)
+++++.+..+.++.++.+.+++|.+..++..|...+ +++ .++.+.+++.+++.++..+++++.|+++||
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~ 97 (481)
T TIGR00879 21 STYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAF---EFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDR 97 (481)
T ss_pred cccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHH---HHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhh
Confidence 345667777888888889999999999988877766 333 558999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHH-HhhhcCc---hhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHH
Q psy3292 75 IGRKWTLLSTATLSAFSV-GQTFGWS---SPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCW 132 (213)
Q Consensus 75 ~Grr~~~~~~~~~~~~~~-~~~~~~~---~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~ 132 (213)
+|||+++..+.++..++. ...+..+ ++.+.+ ...+..|...+....+.......+|..
T Consensus 98 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 177 (481)
T TIGR00879 98 FGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGIL 177 (481)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHH
Confidence 999999999999998888 7644332 223433 122223333333344555666677777
Q ss_pred HHHHHH---HHHHhHhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy3292 133 AIPFFA---GMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTG 187 (213)
Q Consensus 133 ~g~~~~---g~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g~~~g 187 (213)
+++.++ +...+..|||+.+++..+..+ +.....+++||+|++. ..++
T Consensus 178 ~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~-------~~~~~~~~l~~~~~~~-~~~~ 227 (481)
T TIGR00879 178 VAYGFGSGKVSLNNTLGWRIPLGLQLIPAG-------LLFLGLFFLPESPRWL-VGKG 227 (481)
T ss_pred HHHHHHHHhhcCCCCccHHHHHHHHHHHHH-------HHHHHHhcCCCChHHH-HHcC
Confidence 777777 555577899999988554421 1122234448988877 5554
No 15
>TIGR00898 2A0119 cation transport protein.
Probab=99.61 E-value=2.9e-15 Score=127.15 Aligned_cols=154 Identities=19% Similarity=0.176 Sum_probs=110.2
Q ss_pred hhhhhhhCCCCCCCCC---hhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-
Q psy3292 31 PVLAYLVSPDSPVPMS---EDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY- 105 (213)
Q Consensus 31 ~~~~~~~~~~~~~~~s---~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~- 105 (213)
+..|.+.+ |++++ +.+.++..+++.+|..+|+++.|+++||+|||+++.++.++..++. ..+++++++.+.+
T Consensus 110 ~~~~~i~~---e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 186 (505)
T TIGR00898 110 TFSSTIVT---EWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVF 186 (505)
T ss_pred cccccEEE---EecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 34566777 78888 8999999999999999999999999999999999999999999999 9999999887766
Q ss_pred -----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccchhhhHHHHHH
Q psy3292 106 -----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLL 168 (213)
Q Consensus 106 -----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~l~ 168 (213)
...+..|...+....+.....+.+|..+++.+++.+.+ ||+.+++.++++++ .
T Consensus 187 r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~---~---- 256 (505)
T TIGR00898 187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFL---F---- 256 (505)
T ss_pred HHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHH---H----
Confidence 11122222222222233334455566666666555443 89998887766321 1
Q ss_pred HHHHHHHHHHHHHHHhhcCcccccccchhhhhh
Q psy3292 169 STGMLCDRIGRKWTLLSTGMLCDRKKHKSSLVR 201 (213)
Q Consensus 169 ~~~~~~~~es~~~~g~~~g~~~~~~~a~~~l~~ 201 (213)
....+++||+|+|+ ..++ +.+++++.+++
T Consensus 257 ~~~~~~~~esp~~l-~~~~---~~~~a~~~l~~ 285 (505)
T TIGR00898 257 FLLSWFVPESPRWL-ISQG---RIEEALKILQR 285 (505)
T ss_pred HHHHHhcCCChHHH-HHCC---CHHHHHHHHHH
Confidence 11224459999999 8888 77776666554
No 16
>TIGR00895 2A0115 benzoate transport.
Probab=99.59 E-value=1.2e-14 Score=118.91 Aligned_cols=150 Identities=19% Similarity=0.150 Sum_probs=119.1
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHH
Q psy3292 5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST 84 (213)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~ 84 (213)
+++++.......+..+..+++....++..|.+.+ +++.++.+.+++.+...++..+++++.|+++||+|||+.+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 88 (398)
T TIGR00895 12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISA---EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWS 88 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHH
Confidence 3445666666677778888888888888999988 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHh
Q psy3292 85 ATLSAFSV-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI 145 (213)
Q Consensus 85 ~~~~~~~~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~ 145 (213)
..+..++. ...+.++.+.+.+ ...+..|...+....+.......+|..+++.+.+++.+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 168 (398)
T TIGR00895 89 ILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF 168 (398)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc
Confidence 99988888 8888888776655 0111112222233345566667889999999999999999
Q ss_pred ccchhhhhhccc
Q psy3292 146 GRKWTLLSTGML 157 (213)
Q Consensus 146 g~~~~~~~~~~~ 157 (213)
||++.+.+.++.
T Consensus 169 g~~~~~~~~~~~ 180 (398)
T TIGR00895 169 GWRSLFYVGGIA 180 (398)
T ss_pred cceeehhhhhhH
Confidence 999998877544
No 17
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.59 E-value=2.1e-14 Score=121.69 Aligned_cols=164 Identities=18% Similarity=-0.028 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhh-HHH-----HHHHHHHHHhhhhhhhHHhhhhhchhHHHH
Q psy3292 9 ILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDE-SSW-----VVASMEFGCWAIPFFAGMLCDRIGRKWTLL 82 (213)
Q Consensus 9 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~-----~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~ 82 (213)
..+...+.++.+.+++|.+.++...|.+.+ ++..+.+. .++ ..++..++..+|+++.|+++||+|||+++.
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~ 91 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGK---VFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILA 91 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 345667778999999999999999998887 55433211 122 247778999999999999999999999999
Q ss_pred HHHHHHHHHH-HhhhcCchhH--------HHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q psy3292 83 STATLSAFSV-GQTFGWSSPV--------LAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIP 135 (213)
Q Consensus 83 ~~~~~~~~~~-~~~~~~~~~~--------l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~ 135 (213)
++.+++.++. .+++++|+.. +.+ ...+..|...+....++......+|..+|+
T Consensus 92 ~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~ 171 (490)
T PRK10642 92 ITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGA 171 (490)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999864 222 223333433333333444444445555555
Q ss_pred HHHHHHH--------hHhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHH
Q psy3292 136 FFAGMLC--------DRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWT 182 (213)
Q Consensus 136 ~~~g~l~--------~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~ 182 (213)
.+...+. +.+|||+.+++..++++ + .+. .....||+|++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l---~--~~~--~~~~~~esp~~~ 219 (490)
T PRK10642 172 GVVVLISTIVGEANFLDWGWRIPFFIALPLGI---I--GLY--LRHALEETPAFQ 219 (490)
T ss_pred HHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH---H--HHH--HHHcCCCChhHH
Confidence 4443333 25799999988665422 1 111 122349999986
No 18
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.58 E-value=1.6e-14 Score=119.99 Aligned_cols=150 Identities=15% Similarity=0.151 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHH
Q psy3292 5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST 84 (213)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~ 84 (213)
+++++.....+.++.+.++++.....+..|.+.+ +++.++.+.++..+++.++..+++++.|+++||+|||+++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~ 89 (426)
T PRK12307 13 TRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKA---DLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWS 89 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 3455666777888888999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHh
Q psy3292 85 ATLSAFSV-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI 145 (213)
Q Consensus 85 ~~~~~~~~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~ 145 (213)
.+...++. ...++++.+.+.+ ...+..|...+....+.......+|..+++.+.+.+.+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~ 169 (426)
T PRK12307 90 IVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY 169 (426)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC
Confidence 99999999 9889888877766 1122222222333334555556777777777777778889
Q ss_pred ccchhhhhhccc
Q psy3292 146 GRKWTLLSTGML 157 (213)
Q Consensus 146 g~~~~~~~~~~~ 157 (213)
|||+.+++..++
T Consensus 170 ~w~~~f~i~~~~ 181 (426)
T PRK12307 170 GWRAAFFVGLLP 181 (426)
T ss_pred CHHHHHHHHHHH
Confidence 999999875433
No 19
>KOG0253|consensus
Probab=99.57 E-value=8.5e-15 Score=116.16 Aligned_cols=182 Identities=14% Similarity=0.037 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHH
Q psy3292 6 TRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTA 85 (213)
Q Consensus 6 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~ 85 (213)
+.|+.....+..+.+.+.+.....+-+.|...+ .++.++.+..++....+.|..+|+..+|..+|++|||+...+..
T Consensus 74 rfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~---~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~ 150 (528)
T KOG0253|consen 74 RFQWYLFFVAGMGWMADAMEMMLLSLILPALDE---VWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTF 150 (528)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHh---hhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhH
Confidence 456677777778888877777777777788888 88899999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HhhhcCchhHHHHh------c-----------CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhcc
Q psy3292 86 TLSAFSV-GQTFGWSSPVLAYL------V-----------SPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGR 147 (213)
Q Consensus 86 ~~~~~~~-~~~~~~~~~~l~~~------~-----------~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~ 147 (213)
....+.. +...++|+..+.++ . .+..|...+... ..+...+.+|..+...+.-.++.++||
T Consensus 151 l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~-~V~~~~waig~v~ea~law~vm~~~gw 229 (528)
T KOG0253|consen 151 LVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLL-TVMSFFWAIGQVFEALLAWGVMSNFGW 229 (528)
T ss_pred HHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcc-hhHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 9999999 99999999888771 1 111111111111 223367888999999999999999999
Q ss_pred chhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhc
Q psy3292 148 KWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRKKHKSSLVRL 202 (213)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g~~~g~~~~~~~a~~~l~~~ 202 (213)
||.+...+.+ . .+.....+++|||||+. +.+| +.++|.+.|+|.
T Consensus 230 r~~l~~~~~p---l----~~~a~f~~w~~ESpRf~-~~~G---~~~kAletL~ki 273 (528)
T KOG0253|consen 230 RYLLFTSSTP---L----MFAARFLVWVYESPRFY-LAKG---DDYKALETLHKI 273 (528)
T ss_pred HHHHHHHHhH---H----HHHHHHHhhcccCcchh-hhcC---ChHHHHHHHHHH
Confidence 9999888866 2 22233345559999999 9999 889988887765
No 20
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.57 E-value=2.4e-14 Score=118.13 Aligned_cols=150 Identities=15% Similarity=0.102 Sum_probs=115.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHH
Q psy3292 5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST 84 (213)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~ 84 (213)
+++.|.......++.+....+.-...+.+|.+.+ +++.++++.++..+.+.++..+++++.|++.||+|||+.+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~ 91 (394)
T PRK10213 15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQ---DLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILF 91 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHH
Confidence 3445554444455544444444444566788888 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHh
Q psy3292 85 ATLSAFSV-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI 145 (213)
Q Consensus 85 ~~~~~~~~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~ 145 (213)
..+..++. ...++++++.+.+ ...+..|...+....+...+..++|..+|+.+++.+.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~ 171 (394)
T PRK10213 92 AVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI 171 (394)
T ss_pred HHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999 8888888887766 1112222222333346666677899999999999999999
Q ss_pred ccchhhhhhccc
Q psy3292 146 GRKWTLLSTGML 157 (213)
Q Consensus 146 g~~~~~~~~~~~ 157 (213)
|||+.+++.++.
T Consensus 172 gw~~~f~~~~~l 183 (394)
T PRK10213 172 GWRNVFNAAAVM 183 (394)
T ss_pred CHHHHHHHHHHH
Confidence 999999877655
No 21
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.57 E-value=2.5e-14 Score=118.72 Aligned_cols=144 Identities=17% Similarity=0.109 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHH
Q psy3292 11 AGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAF 90 (213)
Q Consensus 11 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~ 90 (213)
.+....+..+....+.....|.+|.+.+ +++.++.+.++..+++.++..+++++.|+++||+|||+++..+.++..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~p~l~~i~~---~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~ 93 (413)
T PRK15403 17 FPMALILYDFAAYLTTDLIQPGIINVVR---DFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTL 93 (413)
T ss_pred HHHHHHHHHHHHHHHHHhhccCHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHH
Confidence 3344455555555667777888899888 8999999999999999999999999999999999999999999999999
Q ss_pred HH-HhhhcCchhHHHH------h------------cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhh
Q psy3292 91 SV-GQTFGWSSPVLAY------L------------VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTL 151 (213)
Q Consensus 91 ~~-~~~~~~~~~~l~~------~------------~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~ 151 (213)
+. ...++++.+.+.+ . ..+..+........+...+...+|..+|+++++.+.+..|||+.+
T Consensus 94 ~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f 173 (413)
T PRK15403 94 ACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLF 173 (413)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99 9999999877765 0 001111111122235566677889999999999999999999999
Q ss_pred hhhccc
Q psy3292 152 LSTGML 157 (213)
Q Consensus 152 ~~~~~~ 157 (213)
++..+.
T Consensus 174 ~~~~~~ 179 (413)
T PRK15403 174 AIIAVM 179 (413)
T ss_pred HHHHHH
Confidence 887766
No 22
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.56 E-value=2.5e-14 Score=118.21 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHH
Q psy3292 5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST 84 (213)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~ 84 (213)
+++.+.......+..+...++.....+..|.+.+ +++.|+.+.++..+.+.++..+++++.|+++||+|||+.+..+
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 84 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVE---DFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAG 84 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 4566667777777777777778888888899988 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HhhhcCchhHHHH---h---------------cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHh
Q psy3292 85 ATLSAFSV-GQTFGWSSPVLAY---L---------------VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI 145 (213)
Q Consensus 85 ~~~~~~~~-~~~~~~~~~~l~~---~---------------~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~ 145 (213)
.....++. ...++++++.+.. + ..+..|...+....+.......++..+|+.+++.+.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~ 164 (406)
T PRK15402 85 VAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL 164 (406)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999888 8888888776655 0 001111111112224445556678889999999999999
Q ss_pred ccchhhhhhccc
Q psy3292 146 GRKWTLLSTGML 157 (213)
Q Consensus 146 g~~~~~~~~~~~ 157 (213)
|||+.+++.++.
T Consensus 165 ~w~~~~~~~~~~ 176 (406)
T PRK15402 165 PWRGMFVLFAAL 176 (406)
T ss_pred CccHHHHHHHHH
Confidence 999998776665
No 23
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.55 E-value=6.5e-14 Score=116.90 Aligned_cols=147 Identities=12% Similarity=0.073 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHH
Q psy3292 8 QILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATL 87 (213)
Q Consensus 8 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~ 87 (213)
++.+.....++.+...++....+...|.+.+ +++.++.+.+++.+.+.++..+++++.|++.||+|||+.+.++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~ 97 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLA---DLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIA 97 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHH
Confidence 3344455556666666777777888899998 8999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccc
Q psy3292 88 SAFSV-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRK 148 (213)
Q Consensus 88 ~~~~~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~ 148 (213)
..++. ...++++++.+.. ...+..|...+....+......++|..+++.+.+++.+.+|||
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~ 177 (434)
T PRK11663 98 TGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWR 177 (434)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 99999 8888888876654 0111111112222335556667889999999999999999999
Q ss_pred hhhhhhccc
Q psy3292 149 WTLLSTGML 157 (213)
Q Consensus 149 ~~~~~~~~~ 157 (213)
+.+.+.+++
T Consensus 178 ~~f~~~~i~ 186 (434)
T PRK11663 178 YGMMIAGII 186 (434)
T ss_pred HHHHHHHHH
Confidence 999887665
No 24
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.55 E-value=3.6e-14 Score=120.11 Aligned_cols=149 Identities=15% Similarity=0.155 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHH
Q psy3292 6 TRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTA 85 (213)
Q Consensus 6 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~ 85 (213)
++.+.....+.++.+.+++|.+..++..|.+.+ +++.++.+.++..+.+.++..+++++.|+++||+|||+.+.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 92 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQG---EFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISI 92 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 445566677777888889999999999999988 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HhhhcCchhHHHH------h------------cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc
Q psy3292 86 TLSAFSV-GQTFGWSSPVLAY------L------------VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG 146 (213)
Q Consensus 86 ~~~~~~~-~~~~~~~~~~l~~------~------------~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g 146 (213)
++..++. ...++++++.+.+ . ..+..+...+....+.......+|..+++.+.+.+.+.+|
T Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 172 (496)
T PRK03893 93 VLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG 172 (496)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999 8888888877655 0 1111111111222355666678888999999999999999
Q ss_pred cchhhhhhccc
Q psy3292 147 RKWTLLSTGML 157 (213)
Q Consensus 147 ~~~~~~~~~~~ 157 (213)
||+.+.+..++
T Consensus 173 w~~~f~~~~~~ 183 (496)
T PRK03893 173 WRALFFIGILP 183 (496)
T ss_pred HHHHHHHHHHH
Confidence 99998764443
No 25
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.55 E-value=1.7e-14 Score=121.66 Aligned_cols=145 Identities=11% Similarity=0.069 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHH
Q psy3292 11 AGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAF 90 (213)
Q Consensus 11 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~ 90 (213)
+...+.++.+...+|....++..|.+.+ +++.++++.++..+.+.++..++.++.|+++||+|||+.+..+.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 79 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAG---DLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTL 79 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3455666788888999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred HH-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhh
Q psy3292 91 SV-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTL 151 (213)
Q Consensus 91 ~~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~ 151 (213)
+. ...+++|.+.+.+ ...+..|...+....+.......+|..+|+.+++++.+++|||+.+
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f 159 (485)
T TIGR00711 80 GSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIF 159 (485)
T ss_pred HHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehh
Confidence 99 9999998887765 1111222222233345566667888899999999999999999999
Q ss_pred hhhcccc
Q psy3292 152 LSTGMLC 158 (213)
Q Consensus 152 ~~~~~~~ 158 (213)
+...+++
T Consensus 160 ~~~~~~~ 166 (485)
T TIGR00711 160 LINVPIG 166 (485)
T ss_pred hhhhHHH
Confidence 8877663
No 26
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.54 E-value=1.6e-14 Score=118.13 Aligned_cols=146 Identities=14% Similarity=0.075 Sum_probs=103.5
Q ss_pred cchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-
Q psy3292 28 WSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY- 105 (213)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~- 105 (213)
..++..|.+++ |++.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+......+. .....++++.+.+
T Consensus 9 ~~~~~lp~i~~---~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (368)
T TIGR00903 9 TFSPVLSLVAE---DIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLAC 85 (368)
T ss_pred HHHhhHHHHHH---HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 34678899999 999999999999999999999999999999999999998766655554444 3344367766655
Q ss_pred --h--------------cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccchhhhHHHHHHH
Q psy3292 106 --L--------------VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLS 169 (213)
Q Consensus 106 --~--------------~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~ 169 (213)
+ ..+..|...+....+.......+|..+++++++++.+.+|||+.++..++++++ . .+
T Consensus 86 R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~---~-~~-- 159 (368)
T TIGR00903 86 QLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAA---G-II-- 159 (368)
T ss_pred HHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH---H-HH--
Confidence 0 111122222233335555667889999999999999999999999886666431 1 11
Q ss_pred HHHHHHHHHHHHH
Q psy3292 170 TGMLCDRIGRKWT 182 (213)
Q Consensus 170 ~~~~~~~es~~~~ 182 (213)
...++.||+|++.
T Consensus 160 ~~~~~lp~~p~~~ 172 (368)
T TIGR00903 160 LVLAALPALPFQA 172 (368)
T ss_pred HHHHHcCCCCCCC
Confidence 2233448888654
No 27
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.53 E-value=4.9e-14 Score=115.72 Aligned_cols=140 Identities=17% Similarity=0.106 Sum_probs=111.7
Q ss_pred HHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-H
Q psy3292 15 ATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-G 93 (213)
Q Consensus 15 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~ 93 (213)
..++.+..+.......+.+|.+.+ +++.++++.++..+.+.++..+++++.|++.||+|||+++..+..+..++. .
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~---~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l 84 (382)
T PRK10091 8 LALGTFGLGMAEFGIMGVLTELAH---DVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM 84 (382)
T ss_pred HHHHHHHHHhhHHHHHhChHHHHH---HcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence 344556666667777888899999 999999999999999999999999999999999999999999999999999 9
Q ss_pred hhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhc
Q psy3292 94 QTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTG 155 (213)
Q Consensus 94 ~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~ 155 (213)
.++++|++.+.+ ...+..+...+....+.......+|..+|+++++++.+..|||+.+.+.+
T Consensus 85 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~ 164 (382)
T PRK10091 85 FTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIA 164 (382)
T ss_pred HHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHH
Confidence 999999888766 01111121111222344555667888889999999999999999998877
Q ss_pred cc
Q psy3292 156 ML 157 (213)
Q Consensus 156 ~~ 157 (213)
+.
T Consensus 165 ~~ 166 (382)
T PRK10091 165 VF 166 (382)
T ss_pred HH
Confidence 66
No 28
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.52 E-value=1.7e-13 Score=114.25 Aligned_cols=96 Identities=19% Similarity=0.045 Sum_probs=76.8
Q ss_pred chhHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCC---CCChhhHHH---HHHHHHHHHhhhhhhhHHhhhhhc
Q psy3292 3 SGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPV---PMSEDESSW---VVASMEFGCWAIPFFAGMLCDRIG 76 (213)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~s~~~~~~---~~s~~~~g~~ig~~~~g~l~d~~G 76 (213)
+++.+++.....+.++.+.+++|....+...|.+.+ ++ +.++.+.+. ..+...++..+|+++.|+++||+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~G 91 (432)
T PRK10406 15 SDTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAH---IFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHG 91 (432)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 346677777777788999999999999988898887 55 344444333 344555666699999999999999
Q ss_pred hhHHHHHHHHHHHHHH-HhhhcCchh
Q psy3292 77 RKWTLLSTATLSAFSV-GQTFGWSSP 101 (213)
Q Consensus 77 rr~~~~~~~~~~~~~~-~~~~~~~~~ 101 (213)
||+++..+...+.++. ..++++++.
T Consensus 92 rr~~l~~~~~~~~~~~~~~~~~~~~~ 117 (432)
T PRK10406 92 RKKSMLISVCMMCFGSLVIACLPGYE 117 (432)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCch
Confidence 9999999999999999 999888764
No 29
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.52 E-value=3.8e-14 Score=114.18 Aligned_cols=139 Identities=25% Similarity=0.371 Sum_probs=113.0
Q ss_pred HHHHHhhcccccchhhhh-hhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hh
Q psy3292 17 LSAFSVGQTFGWSSPVLA-YLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQ 94 (213)
Q Consensus 17 ~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~ 94 (213)
++.+..+++.+...+..| .+.+ +++.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++..++. ..
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~ 79 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAE---ELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL 79 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHC---CSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence 445566666777788888 8888 899999999999999999999999999999999999999999999999996 66
Q ss_pred hhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcc
Q psy3292 95 TFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGM 156 (213)
Q Consensus 95 ~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~ 156 (213)
.++++.+.+.+ ...+..|...++...+.......+|..+|+.+++.+.+..|||+.+++.++
T Consensus 80 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~ 159 (352)
T PF07690_consen 80 AFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAI 159 (352)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHH
T ss_pred hhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccc
Confidence 56666664444 233344444455556778888999999999999999999999999988887
Q ss_pred cc
Q psy3292 157 LC 158 (213)
Q Consensus 157 ~~ 158 (213)
.+
T Consensus 160 ~~ 161 (352)
T PF07690_consen 160 LS 161 (352)
T ss_dssp HH
T ss_pred hh
Confidence 74
No 30
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.51 E-value=1.1e-13 Score=113.13 Aligned_cols=134 Identities=16% Similarity=0.104 Sum_probs=107.8
Q ss_pred HhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCc
Q psy3292 21 SVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWS 99 (213)
Q Consensus 21 ~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~ 99 (213)
..+.+.....+..|.+.+ +++.++++.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++. ...+.++
T Consensus 16 ~~~~~~~~~~~~~p~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 92 (385)
T TIGR00710 16 LGPLGIDMYLPAFPEIAA---DLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN 92 (385)
T ss_pred HHHHHHHHhcccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc
Confidence 334556667788899988 899999999999999999999999999999999999999999999999999 8888888
Q ss_pred hhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 100 SPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 100 ~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
.+.+.+ ...+..|...+....+.......+|..+|+.+++.+.+..|||+.+++..+.
T Consensus 93 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~ 168 (385)
T TIGR00710 93 IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLA 168 (385)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 777655 1112222222233346666678889999999999999999999988776655
No 31
>PRK10504 putative transporter; Provisional
Probab=99.50 E-value=2.2e-13 Score=114.69 Aligned_cols=143 Identities=15% Similarity=0.110 Sum_probs=112.3
Q ss_pred HHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHH
Q psy3292 12 GMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFS 91 (213)
Q Consensus 12 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~ 91 (213)
.....++.+...++....++..|.+.+ +++.++.+.+++.+.+.++..++.++.|+++||+|||+.+..+..+..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 88 (471)
T PRK10504 12 LWIVAFGFFMQSLDTTIVNTALPSMAQ---SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG 88 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH---HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 344556677788888888889999998 89999999999999999999999999999999999999999998888888
Q ss_pred H-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhh
Q psy3292 92 V-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLL 152 (213)
Q Consensus 92 ~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~ 152 (213)
. ...++++.+.+.+ ...+..|........+......++|..+|+.+++.+.+..|||+.+.
T Consensus 89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~ 168 (471)
T PRK10504 89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFL 168 (471)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHH
Confidence 8 8788888776654 00111111111122345555667899999999999999999999998
Q ss_pred hhccc
Q psy3292 153 STGML 157 (213)
Q Consensus 153 ~~~~~ 157 (213)
+....
T Consensus 169 ~~~~~ 173 (471)
T PRK10504 169 INIPV 173 (471)
T ss_pred HHHHH
Confidence 76655
No 32
>PRK03699 putative transporter; Provisional
Probab=99.50 E-value=3.7e-13 Score=110.96 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHH
Q psy3292 7 RQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTAT 86 (213)
Q Consensus 7 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~ 86 (213)
+++.......++.+..+.+....++..|.+.+ +++.|+++.++..+.+.++..+++++.|++.||+|||+++..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~---~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~ 80 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAE---YFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFA 80 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444556667788888888888889999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HhhhcCchhHHHH----------hcCCC----CCCCCCcchh----hHHHHHHHHHHHHHHHHHHHHHh-Hhc
Q psy3292 87 LSAFSV-GQTFGWSSPVLAY----------LVSPD----SPVPMSEDES----SWVVASMEFGCWAIPFFAGMLCD-RIG 146 (213)
Q Consensus 87 ~~~~~~-~~~~~~~~~~l~~----------~~~~~----~~~~~~~~~~----~~~~~~~~lg~~~g~~~~g~l~~-~~g 146 (213)
+..++. ...++++++.+.+ ..... ......++.. +.......+|..+++.+.+.+.+ ..|
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g 160 (394)
T PRK03699 81 LMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE 160 (394)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999 8888888876654 00000 0111222223 23334556777888888887754 579
Q ss_pred cchhhhhhccc
Q psy3292 147 RKWTLLSTGML 157 (213)
Q Consensus 147 ~~~~~~~~~~~ 157 (213)
||+.+...+++
T Consensus 161 w~~~f~~~~~~ 171 (394)
T PRK03699 161 WYWVYACIGLV 171 (394)
T ss_pred HHHHHHHHHHH
Confidence 99999876665
No 33
>PRK09952 shikimate transporter; Provisional
Probab=99.48 E-value=8.2e-13 Score=110.44 Aligned_cols=161 Identities=14% Similarity=0.026 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHhhcccccchhhhhhh-hCCCCCC--CCChhhHHHHH-----HHHHHHHhhhhhhhHHhhhhhchh
Q psy3292 7 RQILAGMSATLSAFSVGQTFGWSSPVLAYL-VSPDSPV--PMSEDESSWVV-----ASMEFGCWAIPFFAGMLCDRIGRK 78 (213)
Q Consensus 7 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~--~~s~~~~~~~~-----s~~~~g~~ig~~~~g~l~d~~Grr 78 (213)
+++.+.....++.+.+++|....+...|.+ .+ ++ +.++. .++.. ++..++..+|+++.|+++||+|||
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr 94 (438)
T PRK09952 19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNR---EFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRK 94 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccH
Confidence 334567777788999999999988777643 33 22 44544 45543 345566789999999999999999
Q ss_pred HHHHHHHHHHHHHH-HhhhcCchhH--------HHH------------------hcCCCCCCCCCcchhhHHHHHHHHHH
Q psy3292 79 WTLLSTATLSAFSV-GQTFGWSSPV--------LAY------------------LVSPDSPVPMSEDESSWVVASMEFGC 131 (213)
Q Consensus 79 ~~~~~~~~~~~~~~-~~~~~~~~~~--------l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~ 131 (213)
+++..+..++.++. .+++++++.. +.. ...+..| +++++...+....|.
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p----~~~rg~~~~~~~~g~ 170 (438)
T PRK09952 95 RMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAP----KNKKAFYSSGVQVGY 170 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCC----CCCCcHHHHHHHHHH
Confidence 99999999999999 9999999763 222 1112222 233344444444444
Q ss_pred HHHHHHH----HHHH--------hHhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHH
Q psy3292 132 WAIPFFA----GMLC--------DRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWT 182 (213)
Q Consensus 132 ~~g~~~~----g~l~--------~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~ 182 (213)
.+|++++ ..+. +.+|||..+++..++.+ +. + ......||+|++.
T Consensus 171 ~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l---~~--~--~l~~~~~es~~~~ 226 (438)
T PRK09952 171 GVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL---IA--L--WVRNGMEESAEFE 226 (438)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH---HH--H--HHHHhCCCChhHH
Confidence 4444443 4443 24799999988766522 11 1 1122348999886
No 34
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.47 E-value=4.3e-13 Score=110.38 Aligned_cols=130 Identities=19% Similarity=0.182 Sum_probs=99.1
Q ss_pred ccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHH
Q psy3292 25 TFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVL 103 (213)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l 103 (213)
......+..|.+.+ +++.++.+.++..+.+.++..+++++.|+++||+|||+.+..+.....++. ...++++.+.+
T Consensus 23 ~~~~~~p~~~~i~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l 99 (394)
T PRK11652 23 AQTIYVPAIADMAR---DLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVL 99 (394)
T ss_pred HHHHHhccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 34556677888888 899999999999999999999999999999999999999999999999888 88888887766
Q ss_pred HH------hcC--------CCCCCCCCcchh----hHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 104 AY------LVS--------PDSPVPMSEDES----SWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 104 ~~------~~~--------~~~~~~~~~~~~----~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
.+ ... ...+....+++. +.......++..+|+.+++.+.+..|||+.+....+.
T Consensus 100 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~ 171 (394)
T PRK11652 100 IAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLL 171 (394)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 55 000 000111222223 2333445666778888899999999999998876655
No 35
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.47 E-value=1.3e-13 Score=111.48 Aligned_cols=137 Identities=16% Similarity=0.089 Sum_probs=105.9
Q ss_pred HHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhh
Q psy3292 18 SAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTF 96 (213)
Q Consensus 18 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~ 96 (213)
+.+...+..+...+..|.+.+ +.+.++.+.+++.+++.++..+++++.|+++||+|||+++..+..+..++. ...+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 83 (365)
T TIGR00900 7 AQLISLIGTAITQVALPLYVL---AGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF 83 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence 344445556666778888888 788999999999999999999999999999999999999999988887777 6666
Q ss_pred cC-----chhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhh
Q psy3292 97 GW-----SSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLS 153 (213)
Q Consensus 97 ~~-----~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~ 153 (213)
.. +.+.+.+ ...+..|...+....+.......+|..+|+.+++.+.+..|||+.++.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~ 163 (365)
T TIGR00900 84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWV 163 (365)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 55 6666544 111222222223334666777889999999999999999999999877
Q ss_pred hccc
Q psy3292 154 TGML 157 (213)
Q Consensus 154 ~~~~ 157 (213)
..+.
T Consensus 164 ~~~~ 167 (365)
T TIGR00900 164 DAVG 167 (365)
T ss_pred HHHH
Confidence 6655
No 36
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.46 E-value=1.5e-12 Score=107.43 Aligned_cols=150 Identities=11% Similarity=-0.047 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHH
Q psy3292 4 GTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLS 83 (213)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~ 83 (213)
+....|........+.+.. --....++..|.+++ |++.|+++.++..+.+.++..+++++.|+++||+|||+++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lp~i~~---~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~ 79 (393)
T PRK09705 4 KFPLNFMLLVLVLIGLNMR-PLLTSVGPLLPQLRQ---ASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAI 79 (393)
T ss_pred ccchHHHHHHHHHHHHHcc-hhhhccchhHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHH
Confidence 3334444444444444332 223566788999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HhhhcCchhHHHH----------hcC----CCCCCCCC---cchhhHHHHHHHHHHHHHHHHHHHHHhHh
Q psy3292 84 TATLSAFSV-GQTFGWSSPVLAY----------LVS----PDSPVPMS---EDESSWVVASMEFGCWAIPFFAGMLCDRI 145 (213)
Q Consensus 84 ~~~~~~~~~-~~~~~~~~~~l~~----------~~~----~~~~~~~~---~~~~~~~~~~~~lg~~~g~~~~g~l~~~~ 145 (213)
+..++.++. ..++++|++.+.. ... .....+.+ ....+........|..+|+.+++++.++.
T Consensus 80 ~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~ 159 (393)
T PRK09705 80 SLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQHS 159 (393)
T ss_pred HHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999 9999999988766 000 01111122 22224444445678888888888888875
Q ss_pred -ccchhhhhhccc
Q psy3292 146 -GRKWTLLSTGML 157 (213)
Q Consensus 146 -g~~~~~~~~~~~ 157 (213)
|||+.+.+..+.
T Consensus 160 ~~w~~~~~~~~~~ 172 (393)
T PRK09705 160 ETWYQTLAWWALP 172 (393)
T ss_pred CCHHHHHHHHHHH
Confidence 899877554433
No 37
>PRK11043 putative transporter; Provisional
Probab=99.45 E-value=6.7e-13 Score=109.53 Aligned_cols=129 Identities=18% Similarity=0.150 Sum_probs=100.6
Q ss_pred cccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHH
Q psy3292 26 FGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLA 104 (213)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~ 104 (213)
.....|..|.+.+ +++.++++.++..+++.++..+++++.|+++||+|||+.+..+..+..++. ...++++.+.+.
T Consensus 22 ~~~~~p~~~~i~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (401)
T PRK11043 22 TDMYLPAFKAIQA---DLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLL 98 (401)
T ss_pred HHHHHhhHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 4555677788888 889999999999999999999999999999999999999999999998888 888888877765
Q ss_pred H---h---------------cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 105 Y---L---------------VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 105 ~---~---------------~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
+ + ..+..+........+.......++..+++.+++++.+.+|||+.++...+.
T Consensus 99 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~ 169 (401)
T PRK11043 99 VLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAI 169 (401)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 5 0 011111111111123444556778889999999999999999998776655
No 38
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.44 E-value=2.1e-12 Score=109.50 Aligned_cols=159 Identities=12% Similarity=0.051 Sum_probs=102.8
Q ss_pred hhhhhh-CCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH--Hh--hhcCchhHHHH-
Q psy3292 32 VLAYLV-SPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV--GQ--TFGWSSPVLAY- 105 (213)
Q Consensus 32 ~~~~~~-~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~--~~--~~~~~~~~l~~- 105 (213)
..|.+. + .++.++.+.++..+...++..++.+..|+++||+|||+.+..+.+...+.. .. ..+++...+.+
T Consensus 272 ~~p~~l~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (490)
T PRK10642 272 YMPSYLSH---NLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAG 348 (490)
T ss_pred HHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 445554 4 567788888888888899999999999999999999999887776443322 12 22333332211
Q ss_pred -----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc-cchhhhhhcccchhhhHHHHH
Q psy3292 106 -----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-RKWTLLSTGMLCDRIGRKWTL 167 (213)
Q Consensus 106 -----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~l 167 (213)
...+..|...+....+.......+++.++|.+.+++.+..+ |+..++...+++ ++
T Consensus 349 ~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~-------~i 421 (490)
T PRK10642 349 LLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVA-------VI 421 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH-------HH
Confidence 11223444444444454444455566778888898888765 454544433332 12
Q ss_pred HHHHHHHHHHHHHHHHhhc-----Ccccccccchhhhhhccc
Q psy3292 168 LSTGMLCDRIGRKWTLLST-----GMLCDRKKHKSSLVRLEG 204 (213)
Q Consensus 168 ~~~~~~~~~es~~~~g~~~-----g~~~~~~~a~~~l~~~~~ 204 (213)
.....++.||+|+|+ +.+ | |+|||+++|+|+|+
T Consensus 422 ~~~~~~~~pes~~~~-~~~~~~~~~---~~~~a~~~l~~~~~ 459 (490)
T PRK10642 422 GLITGVTMKETANRP-LKGATPAAS---DIQEAKEILVEHYD 459 (490)
T ss_pred HHHHHHHhccccCCC-CCCcccccc---chhhHHHHhhcccc
Confidence 222334459999998 754 7 99999999999975
No 39
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.43 E-value=2.1e-13 Score=111.09 Aligned_cols=134 Identities=18% Similarity=0.154 Sum_probs=107.7
Q ss_pred HhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCc
Q psy3292 21 SVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWS 99 (213)
Q Consensus 21 ~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~ 99 (213)
...+|....+...|.+.+ +++.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++..++. ...++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 81 (399)
T TIGR00893 5 INYLDRANLSFAAPMLQE---DLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA 81 (399)
T ss_pred HHHHHHHhhhHhHHHHHH---hhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcC
Confidence 344566777788899988 899999999999999999999999999999999999999999999999999 8888888
Q ss_pred hhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 100 SPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 100 ~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
.+.+.+ ...+..|...+....+.......+|..+++.+.+.+.+..|||+.+...+++
T Consensus 82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (399)
T TIGR00893 82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVL 157 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 877655 1111222222222335566667889999999999999999999999877665
No 40
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.41 E-value=4e-13 Score=109.01 Aligned_cols=138 Identities=12% Similarity=0.088 Sum_probs=101.5
Q ss_pred HHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hh
Q psy3292 16 TLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQ 94 (213)
Q Consensus 16 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~ 94 (213)
.+..+..+..+ ..++..|.+.+ +++.++++.++..+++.++..+++++.|+++||+|||+++..+.++..++. ..
T Consensus 10 ~~~~~~~~~~~-~~~~~~~~~~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~ 85 (377)
T TIGR00890 10 VIMCFTSGYVY-TWTLLAPPLGR---YFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFY 85 (377)
T ss_pred HHHHHHhhHHh-hhhhHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHH
Confidence 33344454444 34677899998 899999999999999999999999999999999999999999999999999 99
Q ss_pred hhcCchhHHHHh------------------cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcc
Q psy3292 95 TFGWSSPVLAYL------------------VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGM 156 (213)
Q Consensus 95 ~~~~~~~~l~~~------------------~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~ 156 (213)
++++|++.+.+. ..+..| ..+....+.......+|..+++.+.+.+.+..|||+.++..++
T Consensus 86 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~ 164 (377)
T TIGR00890 86 AIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGI 164 (377)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHH
Confidence 999998877650 000111 1122222344444455655555566666677899999988776
Q ss_pred cc
Q psy3292 157 LC 158 (213)
Q Consensus 157 ~~ 158 (213)
.+
T Consensus 165 ~~ 166 (377)
T TIGR00890 165 IF 166 (377)
T ss_pred HH
Confidence 63
No 41
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.41 E-value=1.7e-12 Score=105.84 Aligned_cols=137 Identities=18% Similarity=0.122 Sum_probs=101.1
Q ss_pred HHHHhhcccccchhhhhhh-hCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHH-HHHHHHHHH-Hh
Q psy3292 18 SAFSVGQTFGWSSPVLAYL-VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLS-TATLSAFSV-GQ 94 (213)
Q Consensus 18 ~~~~~g~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~-~~~~~~~~~-~~ 94 (213)
..+..++..+...|.+|.+ .+ +++.++.+.+++.+++.++..+.+++.|+++||+|||+.++. +.....++. ..
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSE---EVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHc---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Confidence 3556667777778888764 56 789999999999999999999999999999999999887655 455556666 77
Q ss_pred hhcCchhHHHH-------hcCCCCCC-------CCCcc--h----hhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhh
Q psy3292 95 TFGWSSPVLAY-------LVSPDSPV-------PMSED--E----SSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST 154 (213)
Q Consensus 95 ~~~~~~~~l~~-------~~~~~~~~-------~~~~~--~----~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~ 154 (213)
.++++++.+.+ ......|. ..+++ . .+...+..++|..+|+.+++.+.+.+|||+.+++.
T Consensus 82 ~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~ 161 (375)
T TIGR00899 82 AWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTA 161 (375)
T ss_pred HhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHH
Confidence 88888776654 00111111 11111 1 23444557889999999999999999999999887
Q ss_pred ccc
Q psy3292 155 GML 157 (213)
Q Consensus 155 ~~~ 157 (213)
+++
T Consensus 162 ~~~ 164 (375)
T TIGR00899 162 ALA 164 (375)
T ss_pred HHH
Confidence 766
No 42
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.40 E-value=5.6e-12 Score=101.17 Aligned_cols=141 Identities=26% Similarity=0.362 Sum_probs=114.6
Q ss_pred HHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-H
Q psy3292 15 ATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-G 93 (213)
Q Consensus 15 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~ 93 (213)
..+..+..+++....++..|.+.+ +.+.++.+.++..+...++..+++++.|+++||+|||+.+..+.....++. .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAE---DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 344566677778888888999988 789999999999999999999999999999999999999999999999999 8
Q ss_pred hhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhc
Q psy3292 94 QTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTG 155 (213)
Q Consensus 94 ~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~ 155 (213)
..+.++.+.+.+ ...+..|...+....+.......+|..+++.+++.+.+..+||+.++...
T Consensus 81 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (352)
T cd06174 81 LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA 160 (352)
T ss_pred HHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 888888776655 11122233333444566777788999999999999999999999988776
Q ss_pred ccc
Q psy3292 156 MLC 158 (213)
Q Consensus 156 ~~~ 158 (213)
++.
T Consensus 161 ~~~ 163 (352)
T cd06174 161 ILG 163 (352)
T ss_pred HHH
Confidence 653
No 43
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.40 E-value=2.6e-12 Score=106.62 Aligned_cols=142 Identities=13% Similarity=0.044 Sum_probs=110.3
Q ss_pred HHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH
Q psy3292 13 MSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV 92 (213)
Q Consensus 13 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~ 92 (213)
...+...+..|++.+..++..|.+++ +++.++.+.+++.+.+.++..+++++.|++.||+|||+++..+.+++.++.
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~~---~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQQ---AFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 34556678888889999999999999 999999999999999999999999999999999999999999999999988
Q ss_pred -Hhhh---cCchhHHHH-----------hcC-------CCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH--------
Q psy3292 93 -GQTF---GWSSPVLAY-----------LVS-------PDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLC-------- 142 (213)
Q Consensus 93 -~~~~---~~~~~~l~~-----------~~~-------~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~-------- 142 (213)
.... .++++.+.+ ... ...|...++...+...+..++|..+|+.+.+.+.
T Consensus 83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~ 162 (410)
T TIGR00885 83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS 162 (410)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence 7543 356665544 111 1122223334456677788899999999888774
Q ss_pred ------------------hHhccchhhhhhccc
Q psy3292 143 ------------------DRIGRKWTLLSTGML 157 (213)
Q Consensus 143 ------------------~~~g~~~~~~~~~~~ 157 (213)
+..+||+.+...+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~ 195 (410)
T TIGR00885 163 QDVLDKLSPEELSAIKHSDLASVQTPYMIIGAV 195 (410)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234688888766655
No 44
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.40 E-value=3.8e-13 Score=109.21 Aligned_cols=136 Identities=17% Similarity=0.126 Sum_probs=105.7
Q ss_pred HHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc
Q psy3292 19 AFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG 97 (213)
Q Consensus 19 ~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~ 97 (213)
.+.+.++....+...|.+.+ +++.++++.+++.++..++..+++++.|+++||+|||+.+..+.++..++. ...++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 80 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVE---EIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS 80 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHH---HhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh
Confidence 34455667777788899988 899999999999999999999999999999999999999999999999999 88898
Q ss_pred CchhHHHH------h------------cCCCCCCCCCcchhhHHHHHHHHHHHHHH-HHHHHHHhHhccchhhhhhccc
Q psy3292 98 WSSPVLAY------L------------VSPDSPVPMSEDESSWVVASMEFGCWAIP-FFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 98 ~~~~~l~~------~------------~~~~~~~~~~~~~~~~~~~~~~lg~~~g~-~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
++.+.+.+ . ..+..|...+....+.......+|..+++ .+.+.+.+..|||+.+++.+.+
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (379)
T TIGR00881 81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGII 159 (379)
T ss_pred hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 88877665 0 01111111122223556666778888888 5677777888999998776655
No 45
>PRK15075 citrate-proton symporter; Provisional
Probab=99.39 E-value=6.3e-12 Score=104.97 Aligned_cols=149 Identities=14% Similarity=0.032 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHH-HHHH-----HHHHhhhhhhhHHhhhhhchh
Q psy3292 5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWV-VASM-----EFGCWAIPFFAGMLCDRIGRK 78 (213)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~s~~-----~~g~~ig~~~~g~l~d~~Grr 78 (213)
+..++.......++.+.+.+|....+...|.+.+ +++.++.+.+.. .+.. .++..+|+++.|+++||+|||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr 86 (434)
T PRK15075 10 RESKARAILRVTSGNFLEMFDFFLFGFYATAIAK---TFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRR 86 (434)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchH
Confidence 3445557888888999999999999999999999 888877765543 3322 223357899999999999999
Q ss_pred HHHHHHHHHHHHHH-HhhhcCchhH--------HHH------------------hcCCCCCCCCCcchhhHHHHHHHHHH
Q psy3292 79 WTLLSTATLSAFSV-GQTFGWSSPV--------LAY------------------LVSPDSPVPMSEDESSWVVASMEFGC 131 (213)
Q Consensus 79 ~~~~~~~~~~~~~~-~~~~~~~~~~--------l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~ 131 (213)
+.++.+.....++. ..+++++++. +.+ ...+..|...+....+......++|.
T Consensus 87 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~ 166 (434)
T PRK15075 87 KGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAV 166 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHH
Confidence 99999999999999 9999988763 122 12233343444444455555566677
Q ss_pred HHHHHHHHHHH--------hHhccchhhhhhcc
Q psy3292 132 WAIPFFAGMLC--------DRIGRKWTLLSTGM 156 (213)
Q Consensus 132 ~~g~~~~g~l~--------~~~g~~~~~~~~~~ 156 (213)
.+++.+++.+. +.+|||+.+++..+
T Consensus 167 ~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 167 VFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 77777666653 56899999987543
No 46
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.38 E-value=1.9e-12 Score=105.74 Aligned_cols=129 Identities=17% Similarity=0.186 Sum_probs=103.1
Q ss_pred cccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHH
Q psy3292 26 FGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLA 104 (213)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~ 104 (213)
.+...|..|.+.+ +++.++++.++..+.+.++..+++++.|+++||+|||+.+..+.++..++. ...+.++++.+.
T Consensus 7 ~~~~~p~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (377)
T PRK11102 7 IDMYLPALPVIAA---DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLI 83 (377)
T ss_pred HHHHhccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 3445688899988 899999999999999999999999999999999999999999999999999 888888877665
Q ss_pred H------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 105 Y------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 105 ~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
+ ...+..|...+....+.......+|..+++.+++.+.+..|||+.+++...+
T Consensus 84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 154 (377)
T PRK11102 84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALA 154 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 5 1111222222233335556667788999999999999999999998776655
No 47
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.37 E-value=3.9e-12 Score=107.19 Aligned_cols=147 Identities=11% Similarity=-0.047 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHH
Q psy3292 8 QILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATL 87 (213)
Q Consensus 8 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~ 87 (213)
.+.+..+..++.+....|-...+...|.+.+ +++.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~ 103 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMIS---TYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLIL 103 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHH
Confidence 5556666777777777788888889999999 9999999999999999999999999999999999999998887777
Q ss_pred HHHHH-Hhhh-----cCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3292 88 SAFSV-GQTF-----GWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD 143 (213)
Q Consensus 88 ~~~~~-~~~~-----~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~ 143 (213)
..+.. ..++ +++.+.+.+ ...+..|...+....+.......+|..+++++..++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~ 183 (467)
T PRK09556 104 SAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGAN 183 (467)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHH
Confidence 66555 4443 577776655 11112222223333455556667788888887777666
Q ss_pred Hh---ccchhhhhhccc
Q psy3292 144 RI---GRKWTLLSTGML 157 (213)
Q Consensus 144 ~~---g~~~~~~~~~~~ 157 (213)
.. +||..+.+.+++
T Consensus 184 ~~~~~~~~~~f~~~g~~ 200 (467)
T PRK09556 184 YFFDGHVIGMFIFPSII 200 (467)
T ss_pred hhccCcchhHHHHHHHH
Confidence 54 577776665554
No 48
>PRK10054 putative transporter; Provisional
Probab=99.36 E-value=1e-11 Score=102.56 Aligned_cols=128 Identities=14% Similarity=0.103 Sum_probs=97.3
Q ss_pred cccchhhhh-hhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHH
Q psy3292 26 FGWSSPVLA-YLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVL 103 (213)
Q Consensus 26 ~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l 103 (213)
.+...+..| .+.+ +++.++.+.++..+.+.++..+++++.|+++||+|||+++.++.+...++. ...+.++++.+
T Consensus 23 ~~~~~~~l~~~l~~---~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (395)
T PRK10054 23 RGATLPFMTIYLSR---QYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLV 99 (395)
T ss_pred HHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 444455554 4456 789999999999999999999999999999999999999999999888888 88888887655
Q ss_pred HH---h---------------cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 104 AY---L---------------VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 104 ~~---~---------------~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
.. . ..+..|...+....+...+..++|..+|+++++.+.+ .||+..+...++.
T Consensus 100 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~ 170 (395)
T PRK10054 100 VLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAIC 170 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHH
Confidence 43 0 0111111122223356667788999999999998875 7999988876655
No 49
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.35 E-value=9.9e-12 Score=101.00 Aligned_cols=125 Identities=16% Similarity=0.157 Sum_probs=93.5
Q ss_pred cccchhhhhh-hhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcC-chhH
Q psy3292 26 FGWSSPVLAY-LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGW-SSPV 102 (213)
Q Consensus 26 ~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~-~~~~ 102 (213)
....++..|. +.+ +++.|+.+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++. ...+++ +++.
T Consensus 17 ~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (366)
T TIGR00886 17 WFAFSPLAVQMIKD---DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSV 93 (366)
T ss_pred HHHhHHhhhHHHHH---HhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4455777885 777 899999999999999999999999999999999999999999999999999 888888 8777
Q ss_pred HHH------hc-----------CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH----------hccchhhhh
Q psy3292 103 LAY------LV-----------SPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR----------IGRKWTLLS 153 (213)
Q Consensus 103 l~~------~~-----------~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~----------~g~~~~~~~ 153 (213)
+.+ .. .+..|...+....+...+..++|..+++.+++.+.+. .+||+.+++
T Consensus 94 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 94 LLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 655 11 1111111122222444445567888888877776653 389998843
No 50
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.35 E-value=5.7e-12 Score=103.68 Aligned_cols=126 Identities=14% Similarity=0.069 Sum_probs=98.8
Q ss_pred chhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH--
Q psy3292 29 SSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY-- 105 (213)
Q Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~-- 105 (213)
..+..|.+.+ +++.++.+.++..+.+.++..+++++.|+++||+|||+.+..+..+..++. ...++++.+.+.+
T Consensus 22 ~~~~lp~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 98 (392)
T PRK10473 22 YLVGLPRIAA---DLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGR 98 (392)
T ss_pred HhhhHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 3467899888 899999999999999999999999999999999999999999999999998 8888887765544
Q ss_pred ----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 ----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 ----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
...+..|...+....+.......+|..+++.+++.+.+..|||+.+++....
T Consensus 99 ~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~ 166 (392)
T PRK10473 99 FLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAM 166 (392)
T ss_pred HHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHH
Confidence 1111112222222335555666778888999999888889999998877665
No 51
>PRK10133 L-fucose transporter; Provisional
Probab=99.34 E-value=1.2e-11 Score=103.43 Aligned_cols=131 Identities=15% Similarity=0.127 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHH
Q psy3292 9 ILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLS 88 (213)
Q Consensus 9 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~ 88 (213)
........+..+..+++....++..|.+++ +++.++.+.++..+.+.++..+++++.|++.||+|||+++..+..++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~---~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~ 101 (438)
T PRK10133 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 334455556678888888888999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHH-Hh---hhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q psy3292 89 AFSV-GQ---TFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLC 142 (213)
Q Consensus 89 ~~~~-~~---~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~ 142 (213)
.++. .. .++++++.+.+ ...+..+...++...+.....+.+|..+|+.+++.+.
T Consensus 102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 64 46788877655 1111111111122235667778889999988877654
No 52
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.34 E-value=2.4e-11 Score=102.73 Aligned_cols=137 Identities=12% Similarity=0.081 Sum_probs=98.4
Q ss_pred HHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc
Q psy3292 19 AFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG 97 (213)
Q Consensus 19 ~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~ 97 (213)
.+...++....++..|.+.+ +++.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.+...++. ..+++
T Consensus 45 ~~~~~~~~~~~~~~~~~l~~---~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~ 121 (476)
T PLN00028 45 FFTCFVSTFAAAPLLPIIRD---NLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV 121 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh
Confidence 33333444455677889988 899999999999999999999999999999999999999999998888888 88888
Q ss_pred CchhHHHH------h-c----------CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh---------Hhccchhh
Q psy3292 98 WSSPVLAY------L-V----------SPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD---------RIGRKWTL 151 (213)
Q Consensus 98 ~~~~~l~~------~-~----------~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~---------~~g~~~~~ 151 (213)
++.+.+.+ + . .+..|...+....+...+..++|..+++.+.+.+.+ ..|||+.+
T Consensus 122 ~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f 201 (476)
T PLN00028 122 SSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAF 201 (476)
T ss_pred cCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHH
Confidence 88877654 0 0 111111222223344444456777777666655432 25899999
Q ss_pred hhhcccc
Q psy3292 152 LSTGMLC 158 (213)
Q Consensus 152 ~~~~~~~ 158 (213)
++.++++
T Consensus 202 ~i~g~l~ 208 (476)
T PLN00028 202 FVPGLLH 208 (476)
T ss_pred HHHHHHH
Confidence 8877663
No 53
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.33 E-value=2.1e-11 Score=100.13 Aligned_cols=129 Identities=9% Similarity=-0.017 Sum_probs=102.4
Q ss_pred HHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-H
Q psy3292 15 ATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-G 93 (213)
Q Consensus 15 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~ 93 (213)
..++.+..+.+.+..++..|.+.+ +++.|+.+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++. .
T Consensus 11 ~~~~~~~~~~~~~~~~~~lp~~~~---~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~ 87 (381)
T PRK03633 11 LLCGLLLLTLAIAVLNTLVPLWLA---QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG 87 (381)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666777888999999999999 889999999999999999999999999999999999999999999999999 8
Q ss_pred hhhcCchhHHHH----------h--------cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc
Q psy3292 94 QTFGWSSPVLAY----------L--------VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG 146 (213)
Q Consensus 94 ~~~~~~~~~l~~----------~--------~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g 146 (213)
..+++|++.+.+ . .....+...+....+......++|..+|+.+++.+.+...
T Consensus 88 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 158 (381)
T PRK03633 88 LGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM 158 (381)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 888888877665 0 0111122222333355666678888888888888876543
No 54
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.32 E-value=1.5e-11 Score=101.45 Aligned_cols=139 Identities=22% Similarity=0.183 Sum_probs=103.7
Q ss_pred HHHHHHhhcccccchhhhhhhhCCCCCCCCChhh-----HHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHH
Q psy3292 16 TLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDE-----SSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAF 90 (213)
Q Consensus 16 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~-----~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~ 90 (213)
.++.+..++..+...+.+|.+.+ +++.++.+ .+++.+.+.++..+++++.|+++||+|||+.+..+.....+
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 96 (408)
T PRK09874 20 WLGCFLTGAAFSLVMPFLPLYVE---QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGI 96 (408)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHH---HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHH
Confidence 34455566667777888898888 67777544 48889999999999999999999999999999999988888
Q ss_pred HH-HhhhcCchhHHHH------hcC-----------CCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhh
Q psy3292 91 SV-GQTFGWSSPVLAY------LVS-----------PDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLL 152 (213)
Q Consensus 91 ~~-~~~~~~~~~~l~~------~~~-----------~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~ 152 (213)
+. ...+.++++.+.+ ... ...+...+....+.......+|..+++.+++.+.+..|||+.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 176 (408)
T PRK09874 97 VMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFF 176 (408)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 88 8888888776654 111 11111112222344555667888899999999999999999988
Q ss_pred hhccc
Q psy3292 153 STGML 157 (213)
Q Consensus 153 ~~~~~ 157 (213)
+..+.
T Consensus 177 ~~~~~ 181 (408)
T PRK09874 177 ITASV 181 (408)
T ss_pred HHHHH
Confidence 77665
No 55
>KOG1330|consensus
Probab=99.32 E-value=4e-13 Score=109.50 Aligned_cols=152 Identities=14% Similarity=0.078 Sum_probs=121.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHH
Q psy3292 5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST 84 (213)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~ 84 (213)
.+..+....+.++.+..+-+|...+....+..++ .+++++++.|++...+.++..+.+++.|+++||+.||+++..+
T Consensus 28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~---~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG 104 (493)
T KOG1330|consen 28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQT---YFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVG 104 (493)
T ss_pred cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHH---hcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeH
Confidence 4455667777888889999999998888888888 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HhhhcCchhHHHH----------hcCCCCCC----CCCcchh----hHHHHHHHHHHHHHHHHHHHHHhHh
Q psy3292 85 ATLSAFSV-GQTFGWSSPVLAY----------LVSPDSPV----PMSEDES----SWVVASMEFGCWAIPFFAGMLCDRI 145 (213)
Q Consensus 85 ~~~~~~~~-~~~~~~~~~~l~~----------~~~~~~~~----~~~~~~~----~~~~~~~~lg~~~g~~~~g~l~~~~ 145 (213)
..+..+.. ..++++.+|++.+ ...+..|. ...+.++ +++......|..+|-++++.+++..
T Consensus 105 ~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~ 184 (493)
T KOG1330|consen 105 IFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT 184 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc
Confidence 99999999 9999988888877 11111111 2233334 4444445566667777777777776
Q ss_pred c-cchhhhhhcccch
Q psy3292 146 G-RKWTLLSTGMLCD 159 (213)
Q Consensus 146 g-~~~~~~~~~~~~~ 159 (213)
+ |||.++..++..+
T Consensus 185 ~~Wr~af~~~avl~v 199 (493)
T KOG1330|consen 185 FWWRWAFRGSAVLGV 199 (493)
T ss_pred cceEEEEEeehHHHH
Confidence 6 9999999988854
No 56
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.31 E-value=2.1e-11 Score=100.55 Aligned_cols=138 Identities=16% Similarity=-0.029 Sum_probs=97.5
Q ss_pred HHHHHhhcccccchhhhhh-hhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hh
Q psy3292 17 LSAFSVGQTFGWSSPVLAY-LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQ 94 (213)
Q Consensus 17 ~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~ 94 (213)
+..+...++.+...+.+|. +.+ +++.|+.+.+++.+++.++..+++++.|+++||+|||+++..+.+...++. ..
T Consensus 22 ~~~~~~~~~~~~~~~~l~~~i~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~ 98 (399)
T PRK05122 22 MFTFISYLTIGLPLAVLPGYVHD---QLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLY 98 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHH
Confidence 3344444556667788876 456 788999999999999999999999999999999999999999998877665 44
Q ss_pred hhc---C-----chhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccc
Q psy3292 95 TFG---W-----SSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRK 148 (213)
Q Consensus 95 ~~~---~-----~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~ 148 (213)
.++ + ++..+.+ ...+..|...+....+........|..+|+.+++.+.+.+||+
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~ 178 (399)
T PRK05122 99 LLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLA 178 (399)
T ss_pred HHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHH
Confidence 332 2 2223322 0111222222333345555566778889999999999999999
Q ss_pred hhhhhhccc
Q psy3292 149 WTLLSTGML 157 (213)
Q Consensus 149 ~~~~~~~~~ 157 (213)
..+.+..+.
T Consensus 179 ~~~~~~~~~ 187 (399)
T PRK05122 179 GLGLLIMLL 187 (399)
T ss_pred HHHHHHHHH
Confidence 876654433
No 57
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.31 E-value=1.4e-11 Score=103.50 Aligned_cols=148 Identities=12% Similarity=0.032 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHH
Q psy3292 8 QILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATL 87 (213)
Q Consensus 8 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~ 87 (213)
.|.++....+.......+....+...|.+.+ +++.|+++.++..+.+.++..++.++.|+++||+|||++++.+.++
T Consensus 17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 93 (455)
T TIGR00892 17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQ---IFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLL 93 (455)
T ss_pred chHHHHHHHHHHHHHHhhhcchhhhHHHHHH---HhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHH
Confidence 4544444444433211222334566788888 8999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HhhhcCchhHHHH----h---cCC-CCCC-------CC---CcchhhHHHHHHHHHHHHHHHHHHHHHhHhccc
Q psy3292 88 SAFSV-GQTFGWSSPVLAY----L---VSP-DSPV-------PM---SEDESSWVVASMEFGCWAIPFFAGMLCDRIGRK 148 (213)
Q Consensus 88 ~~~~~-~~~~~~~~~~l~~----~---~~~-~~~~-------~~---~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~ 148 (213)
..++. ..+++++.+.+.. + ... ..+. +. +....+.......+|..+++.+.+.+.+.+|||
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr 173 (455)
T TIGR00892 94 ASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWR 173 (455)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChH
Confidence 98888 8888888776542 1 000 0000 11 112224444556778888899999999999999
Q ss_pred hhhhhhcccc
Q psy3292 149 WTLLSTGMLC 158 (213)
Q Consensus 149 ~~~~~~~~~~ 158 (213)
+.+++.+++.
T Consensus 174 ~~f~~~~~~~ 183 (455)
T TIGR00892 174 GSFLILGGLL 183 (455)
T ss_pred HHHHHHHHHH
Confidence 9998887763
No 58
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.30 E-value=6.6e-11 Score=100.28 Aligned_cols=123 Identities=17% Similarity=0.208 Sum_probs=95.2
Q ss_pred hhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh-hchhHHHHHHHHHHHHHH-HhhhcCchhHHH-H-
Q psy3292 30 SPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR-IGRKWTLLSTATLSAFSV-GQTFGWSSPVLA-Y- 105 (213)
Q Consensus 30 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~-~- 105 (213)
......+.+ +++.++.+.+++.+.+.....+..++.|+++|| +|||+++.++.+++.++. ...++.+...+. +
T Consensus 35 ~~l~~yl~~---~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~ 111 (489)
T PRK10207 35 GILAVFFVK---QLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIA 111 (489)
T ss_pred HHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 334455566 789999999999999998888999999999999 999999999999999999 888776533322 1
Q ss_pred -----------------hcCCCCCCCC--CcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhc
Q psy3292 106 -----------------LVSPDSPVPM--SEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTG 155 (213)
Q Consensus 106 -----------------~~~~~~~~~~--~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~ 155 (213)
+..+..|... ++...+......++|..+|+.+++++.+++|||+.|++..
T Consensus 112 ~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~ 180 (489)
T PRK10207 112 LGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCG 180 (489)
T ss_pred HHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 1111222221 1223466778899999999999999999999999998754
No 59
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.30 E-value=3.7e-11 Score=100.89 Aligned_cols=86 Identities=14% Similarity=0.073 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHH
Q psy3292 8 QILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATL 87 (213)
Q Consensus 8 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~ 87 (213)
+|.+.....+.......+....+...|.+.+ + +.++.+.++..+.+.++..+++++.|+++||+|||+++..+.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~---~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~ 102 (452)
T PRK11273 27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVE---Q-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 102 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---c-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHH
Confidence 4444444445555555555556677788877 6 89999999999999999999999999999999999999999998
Q ss_pred HHHHH-Hhhhc
Q psy3292 88 SAFSV-GQTFG 97 (213)
Q Consensus 88 ~~~~~-~~~~~ 97 (213)
..++. ..++.
T Consensus 103 ~~i~~~~~~~~ 113 (452)
T PRK11273 103 AAAVMLFMGFV 113 (452)
T ss_pred HHHHHHHHHhh
Confidence 88888 77664
No 60
>PRK12382 putative transporter; Provisional
Probab=99.30 E-value=3.2e-11 Score=99.20 Aligned_cols=129 Identities=16% Similarity=0.059 Sum_probs=93.1
Q ss_pred hhcccccchhhhhh-hhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh---h
Q psy3292 22 VGQTFGWSSPVLAY-LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT---F 96 (213)
Q Consensus 22 ~g~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~---~ 96 (213)
.....+...|.+|. +.+ +++.|+.+.+++.+++.++..+++++.|+++||+|||+.+..+.+...++. ... .
T Consensus 27 ~~~~~~~~~p~l~~~l~~---~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~ 103 (392)
T PRK12382 27 TYMTVGLPLPVIPLFVHH---DLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAI 103 (392)
T ss_pred HHHHHHHHhhhhhHHHHH---hcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhc
Confidence 33345666677775 456 789999999999999999999999999999999999999998877665543 221 1
Q ss_pred -----cCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhh
Q psy3292 97 -----GWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLS 153 (213)
Q Consensus 97 -----~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~ 153 (213)
.++++.+.+ ...+..|...+....+........|..+|+.+++.+.+++||+.....
T Consensus 104 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~ 183 (392)
T PRK12382 104 LPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT 183 (392)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 234444333 111233334444455666667778889999999999999999876544
No 61
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.29 E-value=1.9e-11 Score=102.90 Aligned_cols=153 Identities=13% Similarity=0.149 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccccchhhhhhhhC-------------------CCCCCCCChhhHHHHHHHHHHHHhhhhh
Q psy3292 6 TRQILAGMSATLSAFSVGQTFGWSSPVLAYLVS-------------------PDSPVPMSEDESSWVVASMEFGCWAIPF 66 (213)
Q Consensus 6 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------------------~~~~~~~s~~~~~~~~s~~~~g~~ig~~ 66 (213)
+.++.+..+..++....-.|....+...+.+.+ .+.+++.++.+.+++.+.+.++..++++
T Consensus 15 ~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~ 94 (465)
T TIGR00894 15 SFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQI 94 (465)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHc
Confidence 334555555555555545555555555544433 0126789999999999999999999999
Q ss_pred hhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc--CchhHHHH------h-cCC-------CCCCCCCcchh----hHHHH
Q psy3292 67 FAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG--WSSPVLAY------L-VSP-------DSPVPMSEDES----SWVVA 125 (213)
Q Consensus 67 ~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~--~~~~~l~~------~-~~~-------~~~~~~~~~~~----~~~~~ 125 (213)
+.|+++||+|||+.+..+.++..++. ...++ .+...+.+ . ... ..+.+.++++. +....
T Consensus 95 ~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 174 (465)
T TIGR00894 95 PVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTS 174 (465)
T ss_pred chHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999998888887 65433 44444433 0 011 11122222333 44555
Q ss_pred HHHHHHHHHHHHHHHHHhHh-ccchhhhhhcccc
Q psy3292 126 SMEFGCWAIPFFAGMLCDRI-GRKWTLLSTGMLC 158 (213)
Q Consensus 126 ~~~lg~~~g~~~~g~l~~~~-g~~~~~~~~~~~~ 158 (213)
...+|..+++++.+++.+.. |||+.+++.++++
T Consensus 175 ~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~ 208 (465)
T TIGR00894 175 GFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVG 208 (465)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHH
Confidence 56788888999999999884 9999998877763
No 62
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.27 E-value=2.1e-10 Score=97.02 Aligned_cols=138 Identities=12% Similarity=0.132 Sum_probs=103.3
Q ss_pred HHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh-hchhHHHHHHHHHHHHHH-Hhhhc
Q psy3292 20 FSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR-IGRKWTLLSTATLSAFSV-GQTFG 97 (213)
Q Consensus 20 ~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~~~~-~~~~~ 97 (213)
+.+.+.+....+.+|.|.+.+.+++.++.+.+++.+.+.++..+++++.|+++|| +|||+++.++.++..++. ..+++
T Consensus 20 ~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~ 99 (475)
T TIGR00924 20 LWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS 99 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc
Confidence 3333344444566676644112389999999999999999999999999999999 899999999999999999 88888
Q ss_pred CchhHHHH------------------hcCCCCCCC---CCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcc
Q psy3292 98 WSSPVLAY------------------LVSPDSPVP---MSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGM 156 (213)
Q Consensus 98 ~~~~~l~~------------------~~~~~~~~~---~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~ 156 (213)
++.+.+.. +.....|.. .++...+......++|..+|+.+++++.+.+||++.+...++
T Consensus 100 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~ 179 (475)
T TIGR00924 100 IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAV 179 (475)
T ss_pred ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 77655433 011111111 122234677788899999999999999999999999988664
Q ss_pred c
Q psy3292 157 L 157 (213)
Q Consensus 157 ~ 157 (213)
.
T Consensus 180 ~ 180 (475)
T TIGR00924 180 G 180 (475)
T ss_pred H
Confidence 4
No 63
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.24 E-value=2.1e-11 Score=98.65 Aligned_cols=172 Identities=15% Similarity=0.009 Sum_probs=135.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHH
Q psy3292 5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST 84 (213)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~ 84 (213)
++.++.+...+.++...+-+.---.+...|.+.| +.++|.+|.+.+.+++.+...++-++.|.++||.+.|..+-.+
T Consensus 24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e---~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g 100 (448)
T COG2271 24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIE---DGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFG 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHH
Confidence 4456777788888888877777777888899999 8889999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HhhhcCchhHHHH-------hcCCC-----------CCCCCCcchhhHHHHHHHHHHHHHHHHH--HHHHh
Q psy3292 85 ATLSAFSV-GQTFGWSSPVLAY-------LVSPD-----------SPVPMSEDESSWVVASMEFGCWAIPFFA--GMLCD 143 (213)
Q Consensus 85 ~~~~~~~~-~~~~~~~~~~l~~-------~~~~~-----------~~~~~~~~~~~~~~~~~~lg~~~g~~~~--g~l~~ 143 (213)
.++..+.+ .++++++...+.+ +++.- .+...+....+...+.-++|+.+.+++. +++.+
T Consensus 101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~ 180 (448)
T COG2271 101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF 180 (448)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence 99999999 9999998877665 22222 2223344444667777889999988888 99999
Q ss_pred HhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy3292 144 RIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLS 185 (213)
Q Consensus 144 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g~~ 185 (213)
+.+||..|+..+++++. +..+..+...++|.=.|+.
T Consensus 181 ~~~w~~~f~~pgiiaii------val~~~~~~rd~Pqs~GLP 216 (448)
T COG2271 181 HGGWRAAFYFPGIIAII------VALILLFLLRDRPQSEGLP 216 (448)
T ss_pred ccchhHHHHHHHHHHHH------HHHHHHHHhCCCccccCCC
Confidence 99999999998888542 1112233336677666554
No 64
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.23 E-value=1.4e-10 Score=96.93 Aligned_cols=146 Identities=13% Similarity=-0.018 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHH
Q psy3292 9 ILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLS 88 (213)
Q Consensus 9 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~ 88 (213)
+.......+.......+........|.+++ .+.++++.++..+++.++..+++++.|+++||+|||+.+..+.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~ 101 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALAMPYLVE----QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILS 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhhHHHHH----cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHH
Confidence 444444555555555556656666787765 4899999999999999999999999999999999999999988888
Q ss_pred HHHH-Hhhhc----CchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH-hH
Q psy3292 89 AFSV-GQTFG----WSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLC-DR 144 (213)
Q Consensus 89 ~~~~-~~~~~----~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~-~~ 144 (213)
.++. ...+. ++...+.+ ...+..|...+....+.......+|..+++.+.+... +.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 181 (438)
T TIGR00712 102 AAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF 181 (438)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh
Confidence 8887 66554 23333322 0111223333334445555566677777777666544 45
Q ss_pred hccchhhhhhcccc
Q psy3292 145 IGRKWTLLSTGMLC 158 (213)
Q Consensus 145 ~g~~~~~~~~~~~~ 158 (213)
.|||..+++.++++
T Consensus 182 ~~w~~~f~~~~~~~ 195 (438)
T TIGR00712 182 NDWHAALYFPAICA 195 (438)
T ss_pred hhhHHHHHHHHHHH
Confidence 79999998877663
No 65
>KOG0252|consensus
Probab=99.23 E-value=2e-11 Score=99.63 Aligned_cols=94 Identities=18% Similarity=0.039 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccccchhhhhhhhC-----CCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchh
Q psy3292 4 GTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVS-----PDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRK 78 (213)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr 78 (213)
..|+......++..+.|.++||...++.+.|.+.. .+..-+.++...+.+.++.++|..+|+++.|++.||+|||
T Consensus 35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK 114 (538)
T KOG0252|consen 35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRK 114 (538)
T ss_pred hhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 37888999999999999999999999998876654 2222346778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-Hhhhc
Q psy3292 79 WTLLSTATLSAFSV-GQTFG 97 (213)
Q Consensus 79 ~~~~~~~~~~~~~~-~~~~~ 97 (213)
+++...+++++++. +++++
T Consensus 115 ~vYG~~liImIi~t~~~~~s 134 (538)
T KOG0252|consen 115 KVYGKELIIMIICSALSGLS 134 (538)
T ss_pred hhhhHHHHHHHHHHHHhccC
Confidence 99999999988888 76654
No 66
>KOG2615|consensus
Probab=99.23 E-value=2.6e-11 Score=96.86 Aligned_cols=100 Identities=20% Similarity=0.138 Sum_probs=84.6
Q ss_pred CCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-----------------
Q psy3292 44 PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY----------------- 105 (213)
Q Consensus 44 ~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~----------------- 105 (213)
+.+....|.+.+.+.+...+.++.+|.++||+|||++++++++...++. +.+.+.|+..+..
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rA 143 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRA 143 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHH
Confidence 3567788999999999999999999999999999999999999999999 9999999933322
Q ss_pred hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3292 106 LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD 143 (213)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~ 143 (213)
..++..++..+....+.+...+++|..+||.++|++++
T Consensus 144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 34445455555556677888899999999999999998
No 67
>PTZ00207 hypothetical protein; Provisional
Probab=99.20 E-value=1.6e-10 Score=99.09 Aligned_cols=183 Identities=7% Similarity=-0.031 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHH
Q psy3292 6 TRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTA 85 (213)
Q Consensus 6 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~ 85 (213)
.++|.......+.....|..+++ +...|.+++ +++.+..+.+++.++. .....++++.|++.||+|||+++.++.
T Consensus 24 ~~Rw~~lva~~~~~~~~g~~y~f-sv~s~~L~~---~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ 98 (591)
T PTZ00207 24 PRRFALLVLGAFCSICTSFMYAF-NLISGAMQA---RYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSM 98 (591)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH---HhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 34454444444444444444433 245577788 8999999999988763 334567778999999999999999999
Q ss_pred HHHHHHH-Hhhhc------CchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHH-HHHHHH
Q psy3292 86 TLSAFSV-GQTFG------WSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWA-IPFFAG 139 (213)
Q Consensus 86 ~~~~~~~-~~~~~------~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~-g~~~~g 139 (213)
+++.++. ..+++ .+.+.+.+ ......| ..+....+...+...+|.++ +++..+
T Consensus 99 ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~ 177 (591)
T PTZ00207 99 TVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLA 177 (591)
T ss_pred HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 88876 46665544 1111122 12233335555556666653 444444
Q ss_pred HHHhHhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhccc
Q psy3292 140 MLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRKKHKSSLVRLEG 204 (213)
Q Consensus 140 ~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g~~~g~~~~~~~a~~~l~~~~~ 204 (213)
++.+ +|++.+++.++.++ .+.+.......+|+.+++. ..++ +.+++++.+++.++
T Consensus 178 l~~~--~~~~~fl~l~vl~~----vv~ll~~~~vr~p~~~~~~-~~~~---~~~~~~~~~~~~~~ 232 (591)
T PTZ00207 178 FFSD--NTSAYFFFLMSFAL----VVGILAIVFMRLPPFHLTG-YQEK---HLDEEEKAQRLMRK 232 (591)
T ss_pred HHHH--hHHHHHHHHHHHHH----HHHHHHHhheeCCcchhhc-cccc---CCCHHHHHHHhhhh
Confidence 4443 46666665555532 1222233344457777775 5555 44555555555443
No 68
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.19 E-value=4.5e-10 Score=92.96 Aligned_cols=127 Identities=13% Similarity=0.076 Sum_probs=99.4
Q ss_pred ccchhhhh-hhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHH
Q psy3292 27 GWSSPVLA-YLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLA 104 (213)
Q Consensus 27 ~~~~~~~~-~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~ 104 (213)
....+..| .+.+ +.+.++.+.+...+...++..+.+++.|+++||+|||+.+..+.....++. ...+.++.+.+.
T Consensus 27 ~~~~~~~~~~~~~---~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~ 103 (400)
T PRK11646 27 FVVFPLISIRFVD---QLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLW 103 (400)
T ss_pred HHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 33345554 4556 788999999999999999999999999999999999999999999999999 888888877665
Q ss_pred H------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 105 Y------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 105 ~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
+ ...+..|........+......++|..+|+.+++++. .+|||+.+++.++.
T Consensus 104 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~ 173 (400)
T PRK11646 104 LSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVL 173 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHH
Confidence 5 1111222223333446677778999999999999999 77999998877655
No 69
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.15 E-value=5.4e-10 Score=90.75 Aligned_cols=126 Identities=13% Similarity=0.030 Sum_probs=92.3
Q ss_pred ccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH
Q psy3292 27 GWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY 105 (213)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~ 105 (213)
...++.+|.+.+ +++.++++.++..+.+.++..+++++.|+++||+|||+.+.++.....++. .. ..++.+.+.+
T Consensus 17 ~~~~~~lp~l~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 92 (355)
T TIGR00896 17 TSVGPLLPQIRS---ALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFA 92 (355)
T ss_pred ccCcccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHH
Confidence 456788999999 999999999999999999999999999999999999999999998888777 65 6666665543
Q ss_pred ----------hcCCCC----CCCCCc---chhhHHHHHHHHHHHHHHHHHHHHHhHhc--cchhhhhhcc
Q psy3292 106 ----------LVSPDS----PVPMSE---DESSWVVASMEFGCWAIPFFAGMLCDRIG--RKWTLLSTGM 156 (213)
Q Consensus 106 ----------~~~~~~----~~~~~~---~~~~~~~~~~~lg~~~g~~~~g~l~~~~g--~~~~~~~~~~ 156 (213)
...... +....+ ...+.......+|..+++.+.+.+.+..+ ||+.+.....
T Consensus 93 ~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~ 162 (355)
T TIGR00896 93 GTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWAL 162 (355)
T ss_pred HHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 101111 111111 12244445566788888888888887653 7777655443
No 70
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.15 E-value=3.6e-10 Score=92.21 Aligned_cols=81 Identities=16% Similarity=-0.043 Sum_probs=57.8
Q ss_pred HHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHH-----HHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-H
Q psy3292 20 FSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVAS-----MEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-G 93 (213)
Q Consensus 20 ~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~-----~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~ 93 (213)
+.+.+|....+...+.+.+ +...+.++++.+...+. ..++..+++++.|+++||+|||+++..+.++..++. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 81 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFH-TFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLL 81 (394)
T ss_pred chhHHHHHHHHHHHHHHHH-HhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3455666666666666665 11223445555554443 233445789999999999999999999999999999 8
Q ss_pred hhhcCchh
Q psy3292 94 QTFGWSSP 101 (213)
Q Consensus 94 ~~~~~~~~ 101 (213)
..+++++.
T Consensus 82 ~~~~~~~~ 89 (394)
T TIGR00883 82 IGLLPSYA 89 (394)
T ss_pred HhhCCChh
Confidence 88888865
No 71
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.13 E-value=7e-10 Score=94.95 Aligned_cols=128 Identities=16% Similarity=0.232 Sum_probs=89.5
Q ss_pred cccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHH
Q psy3292 26 FGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLA 104 (213)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~ 104 (213)
....+..++.+.. |++.+ +...|+.....++..++.++.|.++|.+|||+.++.+.++..++. +.+.++|...+.
T Consensus 60 ~~~~a~~l~~I~~---diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~i 135 (599)
T PF06609_consen 60 LVLPASILPYINA---DIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFI 135 (599)
T ss_pred HhccHHHHHHHHH---hcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHH
Confidence 4444566677777 77754 778899999999999999999999999999999999999999999 999999988887
Q ss_pred H-----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 105 Y-----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 105 ~-----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
. ..++..|...+...........-.....++.++..+...-+|||.+++..+.
T Consensus 136 ag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~ 205 (599)
T PF06609_consen 136 AGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIW 205 (599)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHH
Confidence 6 1223333222211111111111122223455554555556899999888776
No 72
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.12 E-value=2.3e-09 Score=90.44 Aligned_cols=123 Identities=13% Similarity=0.142 Sum_probs=91.9
Q ss_pred hhhhhh-hCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhh-chhHHHHHHHHHHHHHH-HhhhcCc-hhHHHH-
Q psy3292 31 PVLAYL-VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI-GRKWTLLSTATLSAFSV-GQTFGWS-SPVLAY- 105 (213)
Q Consensus 31 ~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~-Grr~~~~~~~~~~~~~~-~~~~~~~-~~~l~~- 105 (213)
..+|.+ .+ +++.++.+.+.+.+.+.....+++++.|+++||+ |||+++.++.++..++. ......+ ...+..
T Consensus 30 ~~L~~yL~~---~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~ 106 (493)
T PRK15462 30 ALLILYLTN---QLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLS 106 (493)
T ss_pred HHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 445555 44 5789999999999999999999999999999999 99999999999988887 6654321 111111
Q ss_pred -----------------hcCCCCCCC--CCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcc
Q psy3292 106 -----------------LVSPDSPVP--MSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGM 156 (213)
Q Consensus 106 -----------------~~~~~~~~~--~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~ 156 (213)
+..+..|.. .++...+......++|..++|++.+++.+.+||++.|...++
T Consensus 107 l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 107 LAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176 (493)
T ss_pred HHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 111222221 233345777778889999999999999999999999987554
No 73
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.09 E-value=3.8e-10 Score=93.15 Aligned_cols=117 Identities=11% Similarity=0.103 Sum_probs=84.0
Q ss_pred hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH----
Q psy3292 31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY---- 105 (213)
Q Consensus 31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~---- 105 (213)
...+...+ +++.++.+.+++.+.+.++..+..++.|+++||+|||+++..+..+..++. ...++.+......
T Consensus 24 ~~~~~~~~---~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~~~~r~l~G~ 100 (393)
T PRK11195 24 FAAIALLK---ELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHPLLAYGLVGI 100 (393)
T ss_pred HHHHHHHH---HcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455 678889999999999999999999999999999999999999999988877 6666555422211
Q ss_pred -----------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhh
Q psy3292 106 -----------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTL 151 (213)
Q Consensus 106 -----------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~ 151 (213)
...+..|........+.......+|..+||.++|++.+.. ++..+
T Consensus 101 ~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~ 156 (393)
T PRK11195 101 GAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAAL 156 (393)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 1112222222223335666667888999999999999863 44443
No 74
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.09 E-value=3.4e-09 Score=90.22 Aligned_cols=124 Identities=17% Similarity=0.190 Sum_probs=89.0
Q ss_pred hhhh-hhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh-hchhHHHHHHHHHHHHHH-HhhhcCc-hhHHHH-
Q psy3292 31 PVLA-YLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR-IGRKWTLLSTATLSAFSV-GQTFGWS-SPVLAY- 105 (213)
Q Consensus 31 ~~~~-~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~~~~-~~~~~~~-~~~l~~- 105 (213)
...+ .+.+ +++.++.+.++..+.+.......+++.|+++|| +|||+++..+.++..++. ...++++ .+.+..
T Consensus 42 ~~l~~yl~~---~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~ 118 (500)
T PRK09584 42 GIMAVYLVK---QLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMG 118 (500)
T ss_pred HHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 3444 4456 788999999888888776666667899999999 599999999999999998 8777643 332222
Q ss_pred -----h------------cCCCCCCCCC--cchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 -----L------------VSPDSPVPMS--EDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 -----~------------~~~~~~~~~~--~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
. ..+..|.... +...+......++|..+|+.+.+++.|.+|||+.|.+..+.
T Consensus 119 ~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~ 189 (500)
T PRK09584 119 MATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVG 189 (500)
T ss_pred HHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 0 0111111111 11235556778999999999999999999999999876644
No 75
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.08 E-value=7.5e-10 Score=91.33 Aligned_cols=134 Identities=19% Similarity=0.189 Sum_probs=89.3
Q ss_pred HHhhcccccchhhhhh-hhCCCCCCCCChhhHHHHHHHH-HHHHhhhhhhhHHhhhhhchhHHHH-HHHHHHHHHH-Hhh
Q psy3292 20 FSVGQTFGWSSPVLAY-LVSPDSPVPMSEDESSWVVASM-EFGCWAIPFFAGMLCDRIGRKWTLL-STATLSAFSV-GQT 95 (213)
Q Consensus 20 ~~~g~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~s~~-~~g~~ig~~~~g~l~d~~Grr~~~~-~~~~~~~~~~-~~~ 95 (213)
+..+...+...|.+|. +.+ +++.++++.++..+.. ..+...++++.++ .||+|||+.++ .+.+...+.. ...
T Consensus 25 ~~~~~~~~~~~p~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~ 100 (393)
T PRK15011 25 FLTGIAGALQTPTLSIFLTD---EVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFA 100 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHh---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHH
Confidence 3333444545666655 456 7899999999997765 5566677766666 99999998755 4455555666 777
Q ss_pred hcCchhHHHH-------hcCC-------CCCCC--CCcchh----hHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhc
Q psy3292 96 FGWSSPVLAY-------LVSP-------DSPVP--MSEDES----SWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTG 155 (213)
Q Consensus 96 ~~~~~~~l~~-------~~~~-------~~~~~--~~~~~~----~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~ 155 (213)
++++++.+.+ .... ..+.+ .++... +......++|..+|+++++.+.+++|||..++..+
T Consensus 101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~ 180 (393)
T PRK15011 101 WNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAA 180 (393)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHH
Confidence 8888876543 0000 00111 111122 34455678999999999999999999999988776
Q ss_pred cc
Q psy3292 156 ML 157 (213)
Q Consensus 156 ~~ 157 (213)
+.
T Consensus 181 ~~ 182 (393)
T PRK15011 181 VA 182 (393)
T ss_pred HH
Confidence 65
No 76
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.08 E-value=1.1e-09 Score=90.96 Aligned_cols=115 Identities=23% Similarity=0.236 Sum_probs=86.9
Q ss_pred CCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH----------------
Q psy3292 43 VPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY---------------- 105 (213)
Q Consensus 43 ~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~---------------- 105 (213)
.+.+..+.+.+.++..++..++.++.|++.||+|||+.+..+.++..++. ...+.++.+.+..
T Consensus 257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 336 (420)
T PRK09528 257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV 336 (420)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999888888888 7777777665433
Q ss_pred --hcCCCCCCCCCcchhhH-HHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 --LVSPDSPVPMSEDESSW-VVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 --~~~~~~~~~~~~~~~~~-~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
...+..|...+....+. ......+|..+++.+.|++.|.+|++..+...+++
T Consensus 337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~ 391 (420)
T PRK09528 337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGI 391 (420)
T ss_pred HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHH
Confidence 01112232222222222 34456789999999999999999999988876655
No 77
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.07 E-value=4.3e-10 Score=93.35 Aligned_cols=130 Identities=15% Similarity=0.152 Sum_probs=94.3
Q ss_pred ccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh-----hcC
Q psy3292 25 TFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT-----FGW 98 (213)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~-----~~~ 98 (213)
..+...+..|.+.+ +.+.++.+.+++.+.+.++..+++++.|+++||+|||+.+..+..+..++. ... ..+
T Consensus 32 ~~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 108 (417)
T PRK10489 32 GLGLLGVAVPVQIQ---MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEP 108 (417)
T ss_pred HHHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCC
Confidence 34555677788877 677899999999999999999999999999999999999888777666655 332 134
Q ss_pred chhHHHH--------------hcCCCCCCCCCcch----hhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 99 SSPVLAY--------------LVSPDSPVPMSEDE----SSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 99 ~~~~l~~--------------~~~~~~~~~~~~~~----~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
+++.+.+ ......+....+++ .+......++|..+|+.+++.+.+..||++.+.+..+.
T Consensus 109 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~ 185 (417)
T PRK10489 109 SLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAG 185 (417)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5554433 01111222222222 24555567889999999999999999999998776655
No 78
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.05 E-value=2.2e-09 Score=88.80 Aligned_cols=121 Identities=15% Similarity=0.186 Sum_probs=84.8
Q ss_pred hhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh---hc-CchhHHH
Q psy3292 30 SPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT---FG-WSSPVLA 104 (213)
Q Consensus 30 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~---~~-~~~~~l~ 104 (213)
.+..+.+.+ +++.|+++.++..+.+.++..+++++.|++.||+|||+.+..+..+..++. ... .. ++.+.+.
T Consensus 33 ~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 109 (402)
T TIGR00897 33 QGWLSPFLK---ALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLIL 109 (402)
T ss_pred HHhHHHHHH---HhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHH
Confidence 344555556 788999999999999999999999999999999999999999999888876 542 32 3454443
Q ss_pred H---h---------------cCCCCCCCCCcchhhHHHHHHHHHH-HHHHHHHHHHHhHhccchhhhh
Q psy3292 105 Y---L---------------VSPDSPVPMSEDESSWVVASMEFGC-WAIPFFAGMLCDRIGRKWTLLS 153 (213)
Q Consensus 105 ~---~---------------~~~~~~~~~~~~~~~~~~~~~~lg~-~~g~~~~g~l~~~~g~~~~~~~ 153 (213)
. . ..+..|...+....+...+..++|. .+|+.+++++.+.+|++..++.
T Consensus 110 ~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 110 LFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS 177 (402)
T ss_pred HHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 3 0 0011122222223355555566775 5788888888888887665543
No 79
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.05 E-value=6.5e-10 Score=91.37 Aligned_cols=136 Identities=13% Similarity=0.025 Sum_probs=96.8
Q ss_pred HHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHH-HHH--H
Q psy3292 17 LSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSA-FSV--G 93 (213)
Q Consensus 17 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~-~~~--~ 93 (213)
+..+.+.+..+...|.+|.+.+ +++.|+.+.++..+.+.+...+++++.|+++||+||+........... +.. .
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~---~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~ 87 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLK---GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAF 87 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 4455555667788899999998 899999999999999999999999999999999998544322222111 111 2
Q ss_pred hhhcCchhHHHH-------hcCCCCCC---------CCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhc
Q psy3292 94 QTFGWSSPVLAY-------LVSPDSPV---------PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTG 155 (213)
Q Consensus 94 ~~~~~~~~~l~~-------~~~~~~~~---------~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~ 155 (213)
...+++++.+.+ ......|. ..+....+......++|..+|+++++.+.+++|||..+....
T Consensus 88 ~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~ 165 (382)
T TIGR00902 88 SAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTWQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILT 165 (382)
T ss_pred HHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence 335566666544 11111111 112334577888889999999999999999999999876543
No 80
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.04 E-value=4.6e-09 Score=85.18 Aligned_cols=146 Identities=18% Similarity=0.089 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHH
Q psy3292 5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST 84 (213)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~ 84 (213)
.++.......+....|..- ...+++.+.+.+ |+++|++|.+++.+...+...+..++.|++.||+|.|++..++
T Consensus 12 ~~~~L~~S~~af~v~F~VW---~l~s~l~~~i~~---~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s 85 (417)
T COG2223 12 ARRNLWLSTLAFDVGFMVW---TLFSPLGVFIKS---DFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILS 85 (417)
T ss_pred hhHHHHHHHHHHHHHHHHH---HHHHHHHhhhcc---ccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHH
Confidence 3444444444444444432 334566677777 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HhhhcCchh---HHHH-----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3292 85 ATLSAFSV-GQTFGWSSP---VLAY-----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD 143 (213)
Q Consensus 85 ~~~~~~~~-~~~~~~~~~---~l~~-----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~ 143 (213)
.++..+-. ..+++.+.+ .+++ ..+...|+.......+... ..++|..+.++++..++.
T Consensus 86 ~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~ 164 (417)
T COG2223 86 MLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAV 164 (417)
T ss_pred HHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHH
Confidence 99998888 887776555 6555 1222233333333444454 678899999999999999
Q ss_pred Hhc---cchhhhhhccc
Q psy3292 144 RIG---RKWTLLSTGML 157 (213)
Q Consensus 144 ~~g---~~~~~~~~~~~ 157 (213)
..| |+.+..+-.+.
T Consensus 165 ~~g~~~w~~~~~i~~~~ 181 (417)
T COG2223 165 AFGFLAWRNVAGIYVVA 181 (417)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 999 88776655444
No 81
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.03 E-value=1.1e-09 Score=90.03 Aligned_cols=134 Identities=12% Similarity=-0.033 Sum_probs=93.6
Q ss_pred HHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchh----HHHHHHHHHHHHHH-H
Q psy3292 19 AFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRK----WTLLSTATLSAFSV-G 93 (213)
Q Consensus 19 ~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr----~~~~~~~~~~~~~~-~ 93 (213)
.+.+....+...|.+|.+.+ +++.|+++.++..+++.++..+++++.|++.||+||| +.+.+... .... .
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~---~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~--~~~~~~ 87 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK---GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTL--LFAVAF 87 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH---hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHH--HHHHHH
Confidence 34444556777888999988 8899999999999999999999999999999999984 22222211 1122 3
Q ss_pred hhhcCchhHHHH-------hcCCCCCC---------CCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 94 QTFGWSSPVLAY-------LVSPDSPV---------PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 94 ~~~~~~~~~l~~-------~~~~~~~~---------~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
....++.+.+.+ ......|. ..++...+......++|..+|+.+++++.+++|||..++..+..
T Consensus 88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~ 167 (382)
T PRK11128 88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAG 167 (382)
T ss_pred HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 334566666544 01111111 11223346677777899999999999999999999988765543
No 82
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.00 E-value=4.2e-09 Score=85.41 Aligned_cols=123 Identities=19% Similarity=0.091 Sum_probs=91.6
Q ss_pred hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhH--HHH---
Q psy3292 32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPV--LAY--- 105 (213)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~--l~~--- 105 (213)
..+.+.+ +++.++++.+...+...++..+++++.|++.||+|||+.+..+..+..++. ...+.++... +..
T Consensus 227 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (377)
T TIGR00890 227 LYKPYGQ---SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVA 303 (377)
T ss_pred HHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 3444555 677888899999999999999999999999999999999998888888877 6666553221 111
Q ss_pred ---------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 ---------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 ---------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
...+..|...+....+.......+|..+++++.|.+.|..||+..+.+.+++
T Consensus 304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~ 370 (377)
T TIGR00890 304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAF 370 (377)
T ss_pred HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHH
Confidence 0111122223333446677778899999999999999999999988776655
No 83
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.00 E-value=7.8e-09 Score=86.00 Aligned_cols=121 Identities=13% Similarity=0.100 Sum_probs=96.3
Q ss_pred hhhhhhhhCCCCCCCCChhh-HHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH--
Q psy3292 30 SPVLAYLVSPDSPVPMSEDE-SSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY-- 105 (213)
Q Consensus 30 ~~~~~~~~~~~~~~~~s~~~-~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~-- 105 (213)
+...|.+.+ ++++|+++ .+.+.+++..+.++..++.|.++||+|.|+++.++.+...+.. +..++++...+.+
T Consensus 46 s~a~p~L~~---elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R 122 (511)
T TIGR00806 46 SFITPYLLT---VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLME 122 (511)
T ss_pred HHHHHHHHH---HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455688888 99999999 9999999999999999999999999999999999999999999 9999988777766
Q ss_pred ---------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhh
Q psy3292 106 ---------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST 154 (213)
Q Consensus 106 ---------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~ 154 (213)
......|...+....+...+...+|..++++++++ ...+|||+-..+.
T Consensus 123 ~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln 185 (511)
T TIGR00806 123 VFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLN 185 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHH
Confidence 11122333333344466677778888888888888 5567998765443
No 84
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.98 E-value=7.1e-10 Score=96.74 Aligned_cols=79 Identities=13% Similarity=0.112 Sum_probs=70.3
Q ss_pred HHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hh
Q psy3292 16 TLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQ 94 (213)
Q Consensus 16 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~ 94 (213)
.+..+..+.+.+..++.++.+.+ +++++.++.|++.+.+.++.+++.++.+++.||+|||+.+.++.+++.++. +.
T Consensus 39 ~~~~~~~~~~~g~~~~~l~~iek---~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 39 TCAQLQGLLYNGLVNSSLTTIER---RFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHhhchhhhh---hhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 34556666777888899999988 899999999999999999999999999999999999999999999999998 77
Q ss_pred hhc
Q psy3292 95 TFG 97 (213)
Q Consensus 95 ~~~ 97 (213)
++.
T Consensus 116 alp 118 (633)
T TIGR00805 116 SLP 118 (633)
T ss_pred hCh
Confidence 654
No 85
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.98 E-value=3.8e-09 Score=85.29 Aligned_cols=130 Identities=16% Similarity=0.050 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHH
Q psy3292 12 GMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFS 91 (213)
Q Consensus 12 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~ 91 (213)
.+....-.+.+|+......+.+|++++ -++++..|.+.+..++..|..+++++.|.+.+|+|+|+.++.+..++.++
T Consensus 15 ~v~~t~lFfl~G~~~~l~diLip~l~~---~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg 91 (422)
T COG0738 15 FVLLTSLFFLWGFITCLNDILIPHLKE---VFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVG 91 (422)
T ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHH---HhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344445567788888888899999999 99999999999999999999999999999999999999999999999999
Q ss_pred H-Hhh---hcCchhHHHH-----------hcCCCCCC-------CCCcchhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy3292 92 V-GQT---FGWSSPVLAY-----------LVSPDSPV-------PMSEDESSWVVASMEFGCWAIPFFAGMLCDR 144 (213)
Q Consensus 92 ~-~~~---~~~~~~~l~~-----------~~~~~~~~-------~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~ 144 (213)
+ +.. ...++..+++ +....+|. ...........+.+.+|..+||++++++.+.
T Consensus 92 ~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 92 AALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 9 764 5556665554 22333332 1112234677888999999999999999873
No 86
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.97 E-value=3.2e-09 Score=87.85 Aligned_cols=135 Identities=22% Similarity=0.147 Sum_probs=94.7
Q ss_pred HHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhh-----chhH-HHHHHHHHHHHH
Q psy3292 18 SAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI-----GRKW-TLLSTATLSAFS 91 (213)
Q Consensus 18 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~-----Grr~-~~~~~~~~~~~~ 91 (213)
-.+.+|...+.....+|.+.+ +.+.|.++.+++..+... .+..+++|+++||+ |||| .+..+.....+.
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~---~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMT---VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 466788888899999999988 889999999999777776 69999999999999 8876 577767777666
Q ss_pred H-HhhhcC---chhHHHH-------hc-------CCCCCCCCCcchh----hHHHHHHHHHHHHHHHHHHHHHhH-hccc
Q psy3292 92 V-GQTFGW---SSPVLAY-------LV-------SPDSPVPMSEDES----SWVVASMEFGCWAIPFFAGMLCDR-IGRK 148 (213)
Q Consensus 92 ~-~~~~~~---~~~~l~~-------~~-------~~~~~~~~~~~~~----~~~~~~~~lg~~~g~~~~g~l~~~-~g~~ 148 (213)
. ...+.+ +.+.+.. .. ....+...++++. +.....+.+|..+++.+.+.+.+. .|||
T Consensus 82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~ 161 (402)
T PRK11902 82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG 161 (402)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence 6 666653 2333322 00 0001112233333 344445677777777777778885 5999
Q ss_pred hhhhhhccc
Q psy3292 149 WTLLSTGML 157 (213)
Q Consensus 149 ~~~~~~~~~ 157 (213)
..+++.++.
T Consensus 162 ~~f~i~a~~ 170 (402)
T PRK11902 162 NTYLLMAGL 170 (402)
T ss_pred HHHHHHHHH
Confidence 999887765
No 87
>KOG2532|consensus
Probab=98.97 E-value=1.3e-09 Score=91.48 Aligned_cols=120 Identities=17% Similarity=0.209 Sum_probs=93.4
Q ss_pred CCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchh--HHHH------------
Q psy3292 41 SPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSP--VLAY------------ 105 (213)
Q Consensus 41 ~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~--~l~~------------ 105 (213)
.+++.++++.+++.++++.|.++++++.|++.||+|-|+++..+.++..+.. +.-.+.+.. .+.+
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~ 145 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL 145 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence 4688999999999999999999999999999999999999999999998888 766554433 2222
Q ss_pred ------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH-hccchhhhhhcccchh
Q psy3292 106 ------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR-IGRKWTLLSTGMLCDR 160 (213)
Q Consensus 106 ------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~-~g~~~~~~~~~~~~~~ 160 (213)
+.....|...+....+...+...+|..++.+++|++.+. +||+.++++.+..+++
T Consensus 146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i 207 (466)
T KOG2532|consen 146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLI 207 (466)
T ss_pred HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHH
Confidence 112222333333333556666778888888899999998 9999999998888653
No 88
>PRK03699 putative transporter; Provisional
Probab=98.97 E-value=1.3e-08 Score=83.95 Aligned_cols=123 Identities=13% Similarity=0.071 Sum_probs=91.4
Q ss_pred hhhhhhh-CCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH---
Q psy3292 31 PVLAYLV-SPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY--- 105 (213)
Q Consensus 31 ~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~--- 105 (213)
...|.+. + .++.++.+.+.+.+.+.++..+|.++.|+++||+|||+.+.....+..+.. .....++...+.+
T Consensus 226 ~~~p~~l~~---~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (394)
T PRK03699 226 SWVPEYAQK---KFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAIL 302 (394)
T ss_pred HHHHHHHHH---HcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 4456555 4 568899999999999999999999999999999999999888777766666 6555555433322
Q ss_pred ---------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 ---------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 ---------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
...+..+ ...+...+.......+|..++|.+.|++.|..|++..++....+
T Consensus 303 ~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~ 368 (394)
T PRK03699 303 GLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGL 368 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHH
Confidence 0111112 11233446666777899999999999999999999888777766
No 89
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.94 E-value=2.4e-08 Score=82.39 Aligned_cols=122 Identities=11% Similarity=0.135 Sum_probs=87.9
Q ss_pred hhhhh-hCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH----
Q psy3292 32 VLAYL-VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY---- 105 (213)
Q Consensus 32 ~~~~~-~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~---- 105 (213)
..|.+ ++ +++.++.+.+++.+...++..++.++.|+++||+|||+.+..+.....+.. .....++.+....
T Consensus 238 ~~p~~l~~---~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 314 (393)
T PRK15011 238 NMPLFIIN---ELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLL 314 (393)
T ss_pred HHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45544 44 578888999998888888888999999999999999998877666555555 4444555443321
Q ss_pred --------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 --------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 --------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
...+..|. ..+...+.......+|..+|+.++|.+.|++||+..+....++
T Consensus 315 ~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~ 379 (393)
T PRK15011 315 NAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVM 379 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11222332 2444456666778899999999999999999999888776655
No 90
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.93 E-value=2.7e-08 Score=81.72 Aligned_cols=112 Identities=16% Similarity=0.179 Sum_probs=80.4
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH--HhhhcCchhHHHH--------------
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV--GQTFGWSSPVLAY-------------- 105 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~--~~~~~~~~~~l~~-------------- 105 (213)
+.+.++.+.+++.+...++..++.++.|++.||+|||+.+..+.....+.. .....++.+.+..
T Consensus 268 ~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (405)
T TIGR00891 268 DLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWG 347 (405)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchh
Confidence 578899999999999999999999999999999999999887776653333 3333344332211
Q ss_pred ----hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc-cchhhhh
Q psy3292 106 ----LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-RKWTLLS 153 (213)
Q Consensus 106 ----~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g-~~~~~~~ 153 (213)
...+..|...+....+.......+|..+|+++.|++.|+.| ++..+..
T Consensus 348 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 348 ILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred hHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 11222333333444566667778899999999999999999 6655543
No 91
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.93 E-value=9.8e-09 Score=83.36 Aligned_cols=128 Identities=16% Similarity=0.076 Sum_probs=88.1
Q ss_pred ccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhh-----chhHHH-HHHHHHHHHHH-Hhhhc
Q psy3292 25 TFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI-----GRKWTL-LSTATLSAFSV-GQTFG 97 (213)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~-----Grr~~~-~~~~~~~~~~~-~~~~~ 97 (213)
-.+..++..|.+.+ +++.|.++.++.... .+...+ .+++|++.||+ ||||.+ +.+.....+.. ..++.
T Consensus 3 ~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~ 77 (356)
T TIGR00901 3 PLGLVGNTLPYWLR---SKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL 77 (356)
T ss_pred CchhHHhHHHHHHH---HcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC
Confidence 34566778899988 899999999999655 333344 88999999998 898875 55566666665 55565
Q ss_pred Cchh---HHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc--------cc
Q psy3292 98 WSSP---VLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG--------RK 148 (213)
Q Consensus 98 ~~~~---~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g--------~~ 148 (213)
++.. .+.. ...+..|...+....+.......+|..+++.+++.+.+..| ||
T Consensus 78 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr 157 (356)
T TIGR00901 78 VPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWG 157 (356)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccH
Confidence 3322 2222 12222233333334455666678888889999988888888 99
Q ss_pred hhhhhhccc
Q psy3292 149 WTLLSTGML 157 (213)
Q Consensus 149 ~~~~~~~~~ 157 (213)
..+++.++.
T Consensus 158 ~~f~i~ai~ 166 (356)
T TIGR00901 158 YIFFWTALL 166 (356)
T ss_pred HHHHHHHHH
Confidence 999877765
No 92
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.93 E-value=1.3e-09 Score=75.96 Aligned_cols=104 Identities=23% Similarity=0.267 Sum_probs=79.8
Q ss_pred HHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH------------------hcCCCCCCC
Q psy3292 54 VASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY------------------LVSPDSPVP 114 (213)
Q Consensus 54 ~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~------------------~~~~~~~~~ 114 (213)
.+.+.++..+++++.|++.||+|||+.+..+.....++. .....++.+.+.. ...+..|..
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 345667888999999999999999999999988888888 7777777665443 122333434
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 115 MSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 115 ~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
.+....+.......+|..+++.+.+.+.+..||++.+......
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAIL 126 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHH
Confidence 4444556777778899999999999999999999888776655
No 93
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.92 E-value=2.3e-08 Score=80.19 Aligned_cols=130 Identities=22% Similarity=0.223 Sum_probs=97.3
Q ss_pred ccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhH-HHHHHHHHHHHHH-HhhhcCchhHHH
Q psy3292 27 GWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKW-TLLSTATLSAFSV-GQTFGWSSPVLA 104 (213)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~-~~~~~~~~~~~~~-~~~~~~~~~~l~ 104 (213)
.......|.+.+ +..+.++.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++. .....++.+...
T Consensus 192 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 269 (352)
T cd06174 192 YGLLTYLPLYLQ--EVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLL 269 (352)
T ss_pred HHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 333444555554 033789999999999999999999999999999999999 9999999888888 777777654443
Q ss_pred H------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccc
Q psy3292 105 Y------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLC 158 (213)
Q Consensus 105 ~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~ 158 (213)
. ...+..|...+....+.......+|..+++.+.+.+.|..|++..+.+.++++
T Consensus 270 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~ 341 (352)
T cd06174 270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALA 341 (352)
T ss_pred HHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHH
Confidence 3 11222222223333456666778899999999999999999999988877763
No 94
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.91 E-value=1.1e-08 Score=86.94 Aligned_cols=138 Identities=17% Similarity=0.134 Sum_probs=92.1
Q ss_pred HHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhh-----chhHH-HHHHHHHH
Q psy3292 15 ATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI-----GRKWT-LLSTATLS 88 (213)
Q Consensus 15 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~-----Grr~~-~~~~~~~~ 88 (213)
..+..+..|...+..++.+|.+.+ +.+.+.++.+.. +...... ++.+++|+++||+ |||+. +..+.+..
T Consensus 17 ~~~l~~~~gl~~~~~~~~l~~~l~---~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~ 91 (491)
T PRK11010 17 LLILGFASGLPLALTSGTLQAWMT---VENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL 91 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence 334456677778888899999888 778898888886 3333332 6899999999999 99886 55666666
Q ss_pred HHHH-HhhhcC---chhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh-Hh
Q psy3292 89 AFSV-GQTFGW---SSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD-RI 145 (213)
Q Consensus 89 ~~~~-~~~~~~---~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~-~~ 145 (213)
.++. ..++.+ +.+.+.+ ...+..|...+....+.....+.+|..+++.+.+++.+ ..
T Consensus 92 ~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~ 171 (491)
T PRK11010 92 LVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYL 171 (491)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5666 665643 3444432 11122222222222344555567788888888888888 57
Q ss_pred ccchhhhhhccc
Q psy3292 146 GRKWTLLSTGML 157 (213)
Q Consensus 146 g~~~~~~~~~~~ 157 (213)
|||..+++.++.
T Consensus 172 GWr~~f~i~a~l 183 (491)
T PRK11010 172 GWQGMYWLMAAL 183 (491)
T ss_pred CHHHHHHHHHHH
Confidence 999999887766
No 95
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.91 E-value=8.3e-09 Score=85.80 Aligned_cols=129 Identities=11% Similarity=0.052 Sum_probs=84.0
Q ss_pred cccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh---hc----
Q psy3292 26 FGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT---FG---- 97 (213)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~---~~---- 97 (213)
.+...+..|.+.+ ++++.++.+.++..+.+.++..+++++.|+++||+|||+.+.++.....+.. ... .+
T Consensus 26 ~~~~~~~~~~~l~--~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (420)
T PRK09528 26 WSSWFSFFPIWLH--DINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQ 103 (420)
T ss_pred HHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566665544 1589999999999999999999999999999999999999887665544333 211 11
Q ss_pred CchhH-HHH---hcC----C---CCCCCCC------cchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 98 WSSPV-LAY---LVS----P---DSPVPMS------EDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 98 ~~~~~-l~~---~~~----~---~~~~~~~------~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
.+... ... ... . ..+.... ....+......++|..+++++++.+.+. +|+..++..++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~~~f~~~~~~ 179 (420)
T PRK09528 104 YNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNI-NPQINFWLGSGS 179 (420)
T ss_pred HHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhc-CchHhHHHHHHH
Confidence 11111 111 000 0 0111111 1122455666788999999999998864 888888776655
No 96
>KOG3764|consensus
Probab=98.90 E-value=8.4e-10 Score=88.82 Aligned_cols=147 Identities=17% Similarity=0.199 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHhhcccccchhhhhhhhC--C---------------------------------------------CCCC
Q psy3292 11 AGMSATLSAFSVGQTFGWSSPVLAYLVS--P---------------------------------------------DSPV 43 (213)
Q Consensus 11 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~---------------------------------------------~~~~ 43 (213)
+......+.+.+.+.++.+.|++|.+.+ . +.+.
T Consensus 22 ilviv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~ 101 (464)
T KOG3764|consen 22 ILVIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAISL 101 (464)
T ss_pred EEEEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhccCc
Confidence 3344455667788888888888876654 1 1234
Q ss_pred CCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-----------------
Q psy3292 44 PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY----------------- 105 (213)
Q Consensus 44 ~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~----------------- 105 (213)
+.++++.|++.+...+..++-.++.|++.||+|+|..++++.+++..+. ++++.++++++.+
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgl 181 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGL 181 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhH
Confidence 4567789999999999999999999999999999999999999999999 9999999998877
Q ss_pred -hcCCCCCC-CCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 -LVSPDSPV-PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 -~~~~~~~~-~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
+.....|. ..+....|..-+...+|..+||..+|.+-|..|.+..|++.+++
T Consensus 182 amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v 235 (464)
T KOG3764|consen 182 AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIV 235 (464)
T ss_pred HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHH
Confidence 11111121 22233456677778899999999999999999999999887766
No 97
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.88 E-value=3.3e-08 Score=83.80 Aligned_cols=124 Identities=14% Similarity=0.110 Sum_probs=86.3
Q ss_pred hhhhhhh-CCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc--CchhHHHH-
Q psy3292 31 PVLAYLV-SPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG--WSSPVLAY- 105 (213)
Q Consensus 31 ~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~--~~~~~l~~- 105 (213)
...|.+. + +++.++.+.+++.+...++..+++++.|+++||+|||+.+..+..+..+.. ..... .+.+....
T Consensus 296 ~~lp~~l~~---~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (496)
T PRK03893 296 ALLPTYLKT---DLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLL 372 (496)
T ss_pred HHHHHHHHh---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 4456665 5 678999999999999999999999999999999999999887776655554 33322 22222111
Q ss_pred -----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 -----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 -----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
...+..|...+....+...+...+|..+|+++.|.+.|++|++..+...+..
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~ 441 (496)
T PRK03893 373 LFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFS 441 (496)
T ss_pred HHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 0111112222233345666677889999999999999999998877554433
No 98
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.88 E-value=5.7e-08 Score=81.41 Aligned_cols=76 Identities=8% Similarity=-0.045 Sum_probs=63.7
Q ss_pred cchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc-----Cchh
Q psy3292 28 WSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG-----WSSP 101 (213)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~-----~~~~ 101 (213)
..+++.+.+.+ .+++.|++|.+++.++..++..++.++.|++.||+|.|+++.++.++..+.. ..+++ ++++
T Consensus 52 ~~~~l~~~~~~--~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~ 129 (462)
T PRK15034 52 LFSAVTVNLNK--IGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFG 129 (462)
T ss_pred HHHHHHHHhhh--hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHH
Confidence 34555555532 2689999999999999999999999999999999999999999999998888 87775 6777
Q ss_pred HHHH
Q psy3292 102 VLAY 105 (213)
Q Consensus 102 ~l~~ 105 (213)
.+.+
T Consensus 130 ~lli 133 (462)
T PRK15034 130 IFIV 133 (462)
T ss_pred HHHH
Confidence 7666
No 99
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.88 E-value=4.4e-08 Score=82.69 Aligned_cols=125 Identities=13% Similarity=0.029 Sum_probs=81.5
Q ss_pred hhhhhhh-hCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-H--hhhcCchhHHHH
Q psy3292 30 SPVLAYL-VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-G--QTFGWSSPVLAY 105 (213)
Q Consensus 30 ~~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~--~~~~~~~~~l~~ 105 (213)
....|.+ ++ +++.++.+.++..+...++..++.++.|+++||+|||+..........++. . .....+.....+
T Consensus 278 ~~~~p~yl~~---~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (467)
T PRK09556 278 DNWSPVYAFQ---ELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLA 354 (467)
T ss_pred HHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3445654 45 678999999999999999999999999999999999987765544433332 2 222233322211
Q ss_pred ------------------hcCCCCCCCCCcchhhHHHHHHHH-HHHHHHHHHHHHHh------------Hhccchhhhhh
Q psy3292 106 ------------------LVSPDSPVPMSEDESSWVVASMEF-GCWAIPFFAGMLCD------------RIGRKWTLLST 154 (213)
Q Consensus 106 ------------------~~~~~~~~~~~~~~~~~~~~~~~l-g~~~g~~~~g~l~~------------~~g~~~~~~~~ 154 (213)
...+..|........+......++ |..+++.+.|++.| ..||+..+.+.
T Consensus 355 ~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~ 434 (467)
T PRK09556 355 SLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAAL 434 (467)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHH
Confidence 111222333333344555555565 66888999999999 56788887665
Q ss_pred ccc
Q psy3292 155 GML 157 (213)
Q Consensus 155 ~~~ 157 (213)
...
T Consensus 435 ~~~ 437 (467)
T PRK09556 435 DIA 437 (467)
T ss_pred HHH
Confidence 444
No 100
>PRK03545 putative arabinose transporter; Provisional
Probab=98.85 E-value=8.9e-08 Score=78.85 Aligned_cols=120 Identities=12% Similarity=0.017 Sum_probs=83.7
Q ss_pred hhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH--HhhhcCchhHHHH-----
Q psy3292 33 LAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV--GQTFGWSSPVLAY----- 105 (213)
Q Consensus 33 ~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~--~~~~~~~~~~l~~----- 105 (213)
.|.+.+ ..+.++.+.+++.+...++..+++++.|+++||+|||+... +..+..... .....++.+.+..
T Consensus 229 ~~~l~~---~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 304 (390)
T PRK03545 229 EPFVQQ---VAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFW 304 (390)
T ss_pred HHHHHH---hcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 344555 56788899999999999999999999999999999887544 333333333 3344455443322
Q ss_pred -------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 -------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 -------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
...+..| ..+....+...+...+|..+|++++|++.|++|.+..+.....+
T Consensus 305 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~ 368 (390)
T PRK03545 305 GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAAL 368 (390)
T ss_pred HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHH
Confidence 0111122 12233346677778889999999999999999999988777665
No 101
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.84 E-value=1.3e-07 Score=77.10 Aligned_cols=135 Identities=21% Similarity=0.219 Sum_probs=102.4
Q ss_pred HHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc
Q psy3292 19 AFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG 97 (213)
Q Consensus 19 ~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~ 97 (213)
.+.++=.+..++.+-|.+.+ ..+.+++..+++.-++.++..+|.++.|+++|| +.|+.+.....+..+.. ...+.
T Consensus 221 ~l~~~g~F~~ftYi~P~L~~---v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~ 296 (394)
T COG2814 221 FLFMTGHFALYTYIRPFLES---VAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFT 296 (394)
T ss_pred HHHHcchhhhHHhHHHHHHH---ccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHh
Confidence 33344445666677788888 788999999999999999999999999999999 88888888877777777 55544
Q ss_pred Cchh-HHHH---------------hcCCC--CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 98 WSSP-VLAY---------------LVSPD--SPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 98 ~~~~-~l~~---------------~~~~~--~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
.+.. ...+ ..... ......+...+...+.+++|..+|..++|.+.|++|.....+..++.
T Consensus 297 ~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l 374 (394)
T COG2814 297 GASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAAL 374 (394)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 4433 3222 01111 11233455568888899999999999999999999999988888777
No 102
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.84 E-value=5.4e-08 Score=81.36 Aligned_cols=128 Identities=20% Similarity=0.150 Sum_probs=89.0
Q ss_pred ccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh---h--cC--
Q psy3292 27 GWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT---F--GW-- 98 (213)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~---~--~~-- 98 (213)
.......|.+.+ +.+.++.+.++......++..++.++.|+++||+|||+.+..+..+..++. ... . .+
T Consensus 301 ~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (481)
T TIGR00879 301 NAIMYYSPTIFE---NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGS 377 (481)
T ss_pred eehHHHHHHHHH---HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 334445577776 677888888999999999999999999999999999999988877777666 444 1 11
Q ss_pred ----chhHHHH-------h-----------cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcc
Q psy3292 99 ----SSPVLAY-------L-----------VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGM 156 (213)
Q Consensus 99 ----~~~~l~~-------~-----------~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~ 156 (213)
+...+.. . ..+..|...+....+.......+|..+++.+.+.+.++.|+++.+++.+.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~ 457 (481)
T TIGR00879 378 SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGG 457 (481)
T ss_pred ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHH
Confidence 1111111 0 01112222223334556666788999999999999999999988877665
Q ss_pred c
Q psy3292 157 L 157 (213)
Q Consensus 157 ~ 157 (213)
+
T Consensus 458 ~ 458 (481)
T TIGR00879 458 L 458 (481)
T ss_pred H
Confidence 5
No 103
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.83 E-value=9.7e-09 Score=84.72 Aligned_cols=129 Identities=14% Similarity=0.044 Sum_probs=86.0
Q ss_pred cccchhhhhhh-hCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hh---hhcC--
Q psy3292 26 FGWSSPVLAYL-VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQ---TFGW-- 98 (213)
Q Consensus 26 ~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~---~~~~-- 98 (213)
.+...|..|.+ .+ +++.++.+.+++.+.+.++..+++++.|+++||+|||+.+..+.....+.. .. .+++
T Consensus 18 ~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (396)
T TIGR00882 18 MSAYFPFFPIWLHD---VNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLL 94 (396)
T ss_pred HHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34445666655 44 578999999999999999999999999999999999999987766554433 21 1121
Q ss_pred ---chhHHHH-------hcCCCCC---CCC----Cc--chhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccc
Q psy3292 99 ---SSPVLAY-------LVSPDSP---VPM----SE--DESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLC 158 (213)
Q Consensus 99 ---~~~~l~~-------~~~~~~~---~~~----~~--~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~ 158 (213)
......+ ......+ .+. ++ ...+......++|..+|+.+++.+.+ .||+..++..+..+
T Consensus 95 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~ 172 (396)
T TIGR00882 95 QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFA 172 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHH
Confidence 1111111 0010011 011 11 12356667778999999999998876 59999888776663
No 104
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.82 E-value=4.8e-08 Score=90.77 Aligned_cols=101 Identities=9% Similarity=-0.096 Sum_probs=73.4
Q ss_pred CCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh---hcCchhHHHH--------------
Q psy3292 44 PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT---FGWSSPVLAY-------------- 105 (213)
Q Consensus 44 ~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~---~~~~~~~l~~-------------- 105 (213)
..+....+++.+++.++..+++++.|+++||+|||++++.+.++..+.. ... ..++++.+.+
T Consensus 43 ~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~ 122 (1146)
T PRK08633 43 SEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSP 122 (1146)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhch
Confidence 3345668999999999999999999999999999999998877655544 332 3455555544
Q ss_pred ----hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy3292 106 ----LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR 144 (213)
Q Consensus 106 ----~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~ 144 (213)
+..+..+........++......+|..+|+++++++.+.
T Consensus 123 ~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 123 AKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112222333334445777777889999999999999876
No 105
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.82 E-value=7.3e-08 Score=79.15 Aligned_cols=124 Identities=14% Similarity=0.090 Sum_probs=84.3
Q ss_pred hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchh-HHHH---
Q psy3292 31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSP-VLAY--- 105 (213)
Q Consensus 31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~-~l~~--- 105 (213)
..+|.+.+ +.+.++++.+...+...++..+++++.|++.||+|||+.+..+.....++. ......... ....
T Consensus 221 ~~lp~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 297 (381)
T PRK03633 221 GLMPLYLN---HQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLSQAAMAPALFILGA 297 (381)
T ss_pred HHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34677776 568899999999999999999999999999999999999888777766665 432111110 1111
Q ss_pred -----------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 -----------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 -----------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
...+..|........+.....+++|..+||.++|++.|.+|+++.+...+.+
T Consensus 298 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~ 360 (381)
T PRK03633 298 AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASV 360 (381)
T ss_pred HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 1111111111111123334457899999999999999999998888765555
No 106
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.81 E-value=1.2e-07 Score=78.26 Aligned_cols=114 Identities=20% Similarity=0.232 Sum_probs=84.9
Q ss_pred CCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-----------------
Q psy3292 44 PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY----------------- 105 (213)
Q Consensus 44 ~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~----------------- 105 (213)
+.+..+.+...+...+...++.+..|++.||+|||+.+.++..+..+.. .....++.+.+..
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888889999999999999999999999999988888887 7677766665433
Q ss_pred -hcCCCCCCCCCcchhhH-HHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 -LVSPDSPVPMSEDESSW-VVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 -~~~~~~~~~~~~~~~~~-~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
...+..+........+. ......+|..+++++.|++.|..|++..+.+..+.
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~ 383 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCI 383 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHH
Confidence 01111122222222223 44677889999999999999999999988887766
No 107
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=98.81 E-value=1.5e-07 Score=77.40 Aligned_cols=121 Identities=13% Similarity=0.022 Sum_probs=91.6
Q ss_pred hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-----
Q psy3292 32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY----- 105 (213)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~----- 105 (213)
..|.+.+ +.+.++.+.+.+.+...++..++.++.+++.||+|+|+.+.++.+...+.. ...+.++.+.+..
T Consensus 227 ~~~~~l~---~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~ 303 (382)
T TIGR00902 227 FSAIYWQ---AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILH 303 (382)
T ss_pred HHHHHHH---HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Confidence 4455656 689999999999999999999999999999999999999999999999999 8888888776554
Q ss_pred -------------hcCCCCCCCCCcchhhHHH-HHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 -------------LVSPDSPVPMSEDESSWVV-ASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 -------------~~~~~~~~~~~~~~~~~~~-~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
..... |........+.+. ....+|..+|+.++|++.|++|. ..++..+.+
T Consensus 304 g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~ 367 (382)
T TIGR00902 304 CGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAII 367 (382)
T ss_pred HHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHH
Confidence 11221 2222222234433 24568899999999999999986 555555544
No 108
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.80 E-value=1e-07 Score=78.70 Aligned_cols=116 Identities=19% Similarity=0.106 Sum_probs=86.2
Q ss_pred hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-----
Q psy3292 32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY----- 105 (213)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~----- 105 (213)
..|.+.+ +.+.++.+.+...+...++..++.++.|++.||+|||+.+..+.....++. ...+.++.+.+..
T Consensus 242 ~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (406)
T PRK11551 242 WLPSLLV---GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAA 318 (406)
T ss_pred HHHHHHH---hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3567766 678899999999999999999999999999999999999888766666666 5555555443322
Q ss_pred -------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchh
Q psy3292 106 -------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWT 150 (213)
Q Consensus 106 -------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~ 150 (213)
...+..|...+....+...+...+|..+|+.+.|++.++.+....
T Consensus 319 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~ 376 (406)
T PRK11551 319 GLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVG 376 (406)
T ss_pred HHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHH
Confidence 122233444445556777778889999999999999987654433
No 109
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.80 E-value=1.3e-07 Score=78.63 Aligned_cols=124 Identities=14% Similarity=0.008 Sum_probs=90.6
Q ss_pred hhhhhhhCCCCC-CCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH---
Q psy3292 31 PVLAYLVSPDSP-VPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY--- 105 (213)
Q Consensus 31 ~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~--- 105 (213)
...|.+.+ + ++.++.+.+++.+...++..++.++.+++.||.++++.+..+..+..++. ...+.++.....+
T Consensus 244 ~~~p~~~~---~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (417)
T PRK10489 244 VLYPALAD---EVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLA 320 (417)
T ss_pred HhhHHHHH---hccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 34566655 4 78889999999999999999999999999999888888888877777777 7666666544322
Q ss_pred ---------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 ---------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 ---------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
...+..|...+....+.......+|..+|+.+.|++.|.+|.+..+...+..
T Consensus 321 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~ 387 (417)
T PRK10489 321 LFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFG 387 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHH
Confidence 1111222222333345566667889999999999999999988877665544
No 110
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.79 E-value=1.2e-07 Score=77.32 Aligned_cols=115 Identities=13% Similarity=0.085 Sum_probs=83.3
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH---------------
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY--------------- 105 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~--------------- 105 (213)
+++.++.+.+++.+...+...++.++.|++.||+|||+.+.++.....+.. ...+.++.+....
T Consensus 229 ~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 308 (375)
T TIGR00899 229 ELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGI 308 (375)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999998888877788889999999999999999888776655555 4445455443322
Q ss_pred ---hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 ---LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 ---~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
...+..|.. .....+......++|..+|+.+.|.+.|..|++..+...++.
T Consensus 309 ~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~ 362 (375)
T TIGR00899 309 GMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVM 362 (375)
T ss_pred HHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 111222322 223445666667789999999999999999999888776665
No 111
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.79 E-value=1.8e-07 Score=78.62 Aligned_cols=125 Identities=13% Similarity=0.042 Sum_probs=77.5
Q ss_pred hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhh--chhHHHH-HHHHHHHHHH-Hhhh--cCchhHHH
Q psy3292 31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI--GRKWTLL-STATLSAFSV-GQTF--GWSSPVLA 104 (213)
Q Consensus 31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~--Grr~~~~-~~~~~~~~~~-~~~~--~~~~~~l~ 104 (213)
...|.+.+ +..+.+..+.++....+.++..++.++.|+++||+ |||+... ....+..++. .... ..+.....
T Consensus 274 ~~~P~~l~--~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 351 (452)
T PRK11273 274 DWSPTYLK--EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDM 351 (452)
T ss_pred HHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHH
Confidence 45566654 03578888899999999999999999999999999 5554322 2222222222 2212 12221111
Q ss_pred H------------------hcCCCCCCCCCcchhhHHHHHHHHHHHH-HHHHHHHHHhHhccchhhhhhccc
Q psy3292 105 Y------------------LVSPDSPVPMSEDESSWVVASMEFGCWA-IPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 105 ~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~-g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
+ ...+..|........+.......+|..+ |+.+.|++.|+.|++..+.+....
T Consensus 352 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~ 423 (452)
T PRK11273 352 ACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG 423 (452)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHH
Confidence 1 1112334444444556666666677654 799999999999999888766655
No 112
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.79 E-value=1.4e-07 Score=77.94 Aligned_cols=124 Identities=17% Similarity=0.125 Sum_probs=83.0
Q ss_pred hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhh-cCchhHHHH---
Q psy3292 31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTF-GWSSPVLAY--- 105 (213)
Q Consensus 31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~-~~~~~~l~~--- 105 (213)
...|.+.+ +++.++.+.+...+.+.++..+|.+..+++.||+|||+.+..+..+..++. .... .++......
T Consensus 226 ~~lp~~l~---~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 302 (393)
T PRK09705 226 AWLPAFYI---EIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLWAMVC 302 (393)
T ss_pred HHHHHHHH---HcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 34566666 568899999999999999999999999999999999999888877776666 5443 322221111
Q ss_pred -h------------cCCCC-CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc-cchhhhhhccc
Q psy3292 106 -L------------VSPDS-PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-RKWTLLSTGML 157 (213)
Q Consensus 106 -~------------~~~~~-~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g-~~~~~~~~~~~ 157 (213)
. ..... |........+...+...++..+||.+.|++.|..| ++..+.+....
T Consensus 303 g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~ 369 (393)
T PRK09705 303 GLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALC 369 (393)
T ss_pred HHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 0 00000 11111122345556677788889999999999987 44444444433
No 113
>KOG2533|consensus
Probab=98.79 E-value=2.2e-08 Score=84.53 Aligned_cols=118 Identities=16% Similarity=0.093 Sum_probs=86.8
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-------hcCCCCC-
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY-------LVSPDSP- 112 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~-------~~~~~~~- 112 (213)
|.+....+.+.+.+++.++.++|.++.+.+.||+.-.+.+....+...+.. ......|++.+.+ ..+...|
T Consensus 75 dl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~ 154 (495)
T KOG2533|consen 75 DLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPG 154 (495)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchH
Confidence 888999999999999999999999999999999997777777777666666 7777888888777 2222222
Q ss_pred ------CCCCcchhhHHHHHH----HHHHHHHHHHHHHHH------hHhccchhhhhhcccch
Q psy3292 113 ------VPMSEDESSWVVASM----EFGCWAIPFFAGMLC------DRIGRKWTLLSTGMLCD 159 (213)
Q Consensus 113 ------~~~~~~~~~~~~~~~----~lg~~~g~~~~g~l~------~~~g~~~~~~~~~~~~~ 159 (213)
.+.++.+.+...+.+ .+|.++|++++..+. ...||||.|++.+++.+
T Consensus 155 ~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~ 217 (495)
T KOG2533|consen 155 VVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITL 217 (495)
T ss_pred HHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHH
Confidence 234455555544444 466667766666642 24699999999887743
No 114
>PRK12382 putative transporter; Provisional
Probab=98.78 E-value=1.1e-07 Score=78.27 Aligned_cols=122 Identities=11% Similarity=0.067 Sum_probs=85.6
Q ss_pred hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH----
Q psy3292 31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY---- 105 (213)
Q Consensus 31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~---- 105 (213)
...|.+.+ +.+.+ +.+...+.+.++..+++++.|++.||+|||+.+..+..+..++. ...+.++.+....
T Consensus 237 ~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (392)
T PRK12382 237 TFVSLYFA---SKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAAL 311 (392)
T ss_pred HHHHHHHH---hcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 34455544 33443 34556667788889999999999999999999998888888888 7777766554332
Q ss_pred --------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 --------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 --------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
...+..|...+....+...+...+|..+|+.+.|++.|+.|++..+...+.+
T Consensus 312 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~ 377 (392)
T PRK12382 312 TGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAIS 377 (392)
T ss_pred HHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 0011112222223345566667889999999999999999999998877665
No 115
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.77 E-value=4.2e-08 Score=81.76 Aligned_cols=112 Identities=14% Similarity=0.142 Sum_probs=78.8
Q ss_pred ChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcC-ch---hHHHH---------------
Q psy3292 46 SEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGW-SS---PVLAY--------------- 105 (213)
Q Consensus 46 s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~-~~---~~l~~--------------- 105 (213)
+.++.+...++..++..++.++.|+++||+|||+++..+.++..++. ...... +. +.+..
T Consensus 249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34677999999999999999999999999999999999999988887 655532 21 22211
Q ss_pred ---hcCCCCCCCCCcchhhHHH-HHHHHHHHHHHHHHHHHHhHh------ccchhhhhhccc
Q psy3292 106 ---LVSPDSPVPMSEDESSWVV-ASMEFGCWAIPFFAGMLCDRI------GRKWTLLSTGML 157 (213)
Q Consensus 106 ---~~~~~~~~~~~~~~~~~~~-~~~~lg~~~g~~~~g~l~~~~------g~~~~~~~~~~~ 157 (213)
...+..|...+....+... ....+|..+||+++|++.|+. ||+..+...+++
T Consensus 329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~ 390 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGY 390 (418)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 1111122222222335554 346789999999999999985 578887766655
No 116
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.76 E-value=2.4e-07 Score=78.75 Aligned_cols=124 Identities=15% Similarity=0.097 Sum_probs=88.8
Q ss_pred hhhhhCCCCCCCCChhhHHHHHH-HHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-H---hhhc-CchhHHHH-
Q psy3292 33 LAYLVSPDSPVPMSEDESSWVVA-SMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-G---QTFG-WSSPVLAY- 105 (213)
Q Consensus 33 ~~~~~~~~~~~~~s~~~~~~~~s-~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~---~~~~-~~~~~l~~- 105 (213)
.|.+.+ +.+.++++.++... ...++..+|.++.|+++||+|||+.+.+..++..+.. . .... ++...+..
T Consensus 246 ~~~l~~---~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~ 322 (491)
T PRK11010 246 TTFLIR---GVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAA 322 (491)
T ss_pred HHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 344455 57899999999875 5568999999999999999999888776655444433 2 2232 23322111
Q ss_pred -----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccch
Q psy3292 106 -----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCD 159 (213)
Q Consensus 106 -----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~~ 159 (213)
......+......+.+...+...+|..+++.+.|++.|.+||+..+.+..++++
T Consensus 323 ~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l 393 (491)
T PRK11010 323 VFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAV 393 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 122334555666777888888899999899999999999999988877776643
No 117
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.71 E-value=3.2e-07 Score=75.71 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH------------------hcCC
Q psy3292 49 ESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY------------------LVSP 109 (213)
Q Consensus 49 ~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~------------------~~~~ 109 (213)
..+.+.+...++..++.+..|++.||+|||+.+..+.....++. ...+.++.+.+.+ ....
T Consensus 259 ~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 338 (408)
T PRK09874 259 ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVY 338 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 34566677788888999999999999999999998888777777 6666665554433 1111
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 110 DSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
..+....+...+...+...+|..+|+.++|.+.+..|++..+...+..
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~ 386 (408)
T PRK09874 339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGV 386 (408)
T ss_pred hCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHH
Confidence 223334444557777788999999999999999999999988877655
No 118
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.71 E-value=2.6e-07 Score=86.00 Aligned_cols=107 Identities=12% Similarity=-0.069 Sum_probs=75.4
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHH--HHH-HHHHHH-HhhhcCchhHHHH-----------------
Q psy3292 47 EDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLS--TAT-LSAFSV-GQTFGWSSPVLAY----------------- 105 (213)
Q Consensus 47 ~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~--~~~-~~~~~~-~~~~~~~~~~l~~----------------- 105 (213)
....++..+++.+...+.+++.|.++||+|||+++.. ... ...... .....++++.+++
T Consensus 51 ~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~ 130 (1140)
T PRK06814 51 NALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKY 130 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHH
Confidence 3557888889999999999999999999999997533 222 222222 2233366776655
Q ss_pred -hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhh
Q psy3292 106 -LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLS 153 (213)
Q Consensus 106 -~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~ 153 (213)
+.....+........+...+..++|..+|+.++|++.+..||++.+..
T Consensus 131 a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~ 179 (1140)
T PRK06814 131 SILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL 179 (1140)
T ss_pred HhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 111122223334455788888999999999999999999999988733
No 119
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.71 E-value=5.5e-07 Score=74.54 Aligned_cols=123 Identities=16% Similarity=0.126 Sum_probs=83.6
Q ss_pred hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHH-HHHHHHHHHH-Hhh-----hcCchhHH
Q psy3292 31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLL-STATLSAFSV-GQT-----FGWSSPVL 103 (213)
Q Consensus 31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~-~~~~~~~~~~-~~~-----~~~~~~~l 103 (213)
...|.+.+ +.+.++.+.+.+.+...++..++.++.|+++||+|||+... .+.+...+.. ... ..++.+..
T Consensus 243 ~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~ 319 (402)
T TIGR00897 243 VFLPMFVA---ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVA 319 (402)
T ss_pred HHHHHHHH---HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHH
Confidence 34577777 67889999999999999999999999999999999988753 2222222222 211 12233222
Q ss_pred HH-----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 104 AY-----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 104 ~~-----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
.. ...+..| ..+....+.......+|..++|.+.|.+.|..|+...+++.+.+
T Consensus 320 ~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~ 389 (402)
T TIGR00897 320 LIIAIALGIFLAGYVPLAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAAL 389 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 11 1111212 23344456677778889999999999999999998888776655
No 120
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.69 E-value=1.7e-07 Score=78.10 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=62.5
Q ss_pred hhcccccc-hhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhch-hHHHHHHHHHHHHHH-HhhhcC
Q psy3292 22 VGQTFGWS-SPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGR-KWTLLSTATLSAFSV-GQTFGW 98 (213)
Q Consensus 22 ~g~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Gr-r~~~~~~~~~~~~~~-~~~~~~ 98 (213)
+-...+.. ++..+.+.+ +++.++.+.|++.+++.++..+++++.|.++||+|| |+.+.++.+...+.. ...+.+
T Consensus 14 ~~~~~~~~~~~l~~~l~~---~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~ 90 (418)
T TIGR00889 14 QWFIWGSWLVTLGSYMSK---TLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVT 90 (418)
T ss_pred HHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444 444566667 789999999999999999999999999999999965 777777777777777 777777
Q ss_pred chhHHHH
Q psy3292 99 SSPVLAY 105 (213)
Q Consensus 99 ~~~~l~~ 105 (213)
+++.+.+
T Consensus 91 ~~~~~~~ 97 (418)
T TIGR00889 91 TPAGMFP 97 (418)
T ss_pred CHHHHHH
Confidence 7655433
No 121
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.69 E-value=4.5e-07 Score=74.79 Aligned_cols=109 Identities=9% Similarity=0.050 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH------------------hcCC
Q psy3292 49 ESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY------------------LVSP 109 (213)
Q Consensus 49 ~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~------------------~~~~ 109 (213)
+.++..+.+.++..++.++.|++.||+|||+.+..+..+..++. ...+.++.+.... ...+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45666778888999999999999999999999888888877777 7666666544332 0111
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 110 DSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
..|...+....+.......+|..+++.+.|.+.|..|++..++....+
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 377 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALA 377 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 122222233345556667788888999999999999999888776655
No 122
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.66 E-value=8.7e-07 Score=73.33 Aligned_cols=122 Identities=19% Similarity=0.142 Sum_probs=83.7
Q ss_pred hhhhCCCCCCCCChhhHHHHHHHHH-HHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hh---hhc-CchhHHHH--
Q psy3292 34 AYLVSPDSPVPMSEDESSWVVASME-FGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQ---TFG-WSSPVLAY-- 105 (213)
Q Consensus 34 ~~~~~~~~~~~~s~~~~~~~~s~~~-~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~---~~~-~~~~~l~~-- 105 (213)
+.+.+ +.+.++++.+++.+... ++..+|.++.|++.||+|||+.+..+.....+.. .. .+. ++.+.+..
T Consensus 234 ~~l~~---~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 310 (402)
T PRK11902 234 TFLIR---GAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAI 310 (402)
T ss_pred HHHHH---hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 45555 67889999999886654 5689999999999999999998877666655443 22 333 33332221
Q ss_pred ----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccc
Q psy3292 106 ----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLC 158 (213)
Q Consensus 106 ----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~ 158 (213)
......+.....+..+...+...+|...++.++|.+.|++|++..+.+.++++
T Consensus 311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~ 379 (402)
T PRK11902 311 GIENLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIA 379 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 11112222333445566666777888877889999999999999888877663
No 123
>KOG2504|consensus
Probab=98.66 E-value=4.6e-08 Score=83.17 Aligned_cols=145 Identities=15% Similarity=0.148 Sum_probs=106.1
Q ss_pred HHHHHHHHHH-HHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHH
Q psy3292 9 ILAGMSATLS-AFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATL 87 (213)
Q Consensus 9 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~ 87 (213)
|.+++...+. .+.+|...+.- ...+.+++ +++.+.++.+|+.++......+.+++.+.+.||+|.|.+.+.+.++
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~G-v~~~~~~~---~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v 120 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFG-LLFEELMD---YFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLV 120 (509)
T ss_pred eeeeHhHHHHHHhhhcchheeh-hhHHHHHH---HhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHH
Confidence 4444444443 33455444432 45577777 8888999999999999999999999999999999999999999999
Q ss_pred HHHHH-HhhhcCchhHHHH-----------hc---CCCCCCCCCcchhhHHHHH----HHHHHHHHHHHHHHHHhHhccc
Q psy3292 88 SAFSV-GQTFGWSSPVLAY-----------LV---SPDSPVPMSEDESSWVVAS----MEFGCWAIPFFAGMLCDRIGRK 148 (213)
Q Consensus 88 ~~~~~-~~~~~~~~~~l~~-----------~~---~~~~~~~~~~~~~~~~~~~----~~lg~~~g~~~~g~l~~~~g~~ 148 (213)
..++. +..|+++.+++++ +. ..+..-+.-++.++..+++ ..+|..+-+.+.-++.+.+|||
T Consensus 121 ~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r 200 (509)
T KOG2504|consen 121 AALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWR 200 (509)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcH
Confidence 99999 9999999999877 00 0011112234444554444 4555666666777778899999
Q ss_pred hhhhhhccc
Q psy3292 149 WTLLSTGML 157 (213)
Q Consensus 149 ~~~~~~~~~ 157 (213)
+.+++...+
T Consensus 201 ~~~l~~~~~ 209 (509)
T KOG2504|consen 201 GALLIFGGI 209 (509)
T ss_pred HHHHHHHHH
Confidence 999877766
No 124
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.66 E-value=3.5e-07 Score=77.38 Aligned_cols=139 Identities=21% Similarity=0.212 Sum_probs=92.5
Q ss_pred HHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhc-----hhHHHHHHHHHH
Q psy3292 14 SATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-----RKWTLLSTATLS 88 (213)
Q Consensus 14 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~G-----rr~~~~~~~~~~ 88 (213)
+.....+..|.-.-......|.+++ ++++++++.+...+...+...+-.+ +|+++||++ ||+.++++.++.
T Consensus 30 ~~~~~y~~qGl~~l~~~~~~~~l~~---~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~ 105 (468)
T TIGR00788 30 IGLQVLFVKGIAGLMRLPLSPMLTD---DLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLG 105 (468)
T ss_pred HHHHHHHHhhHHHHhhhhhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHH
Confidence 3344456777762233344577777 7899999999999999999988777 999999998 777777777666
Q ss_pred -HHHH-HhhhcCchhHHHH-------------------hcCCCCCCCCCcc---hhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy3292 89 -AFSV-GQTFGWSSPVLAY-------------------LVSPDSPVPMSED---ESSWVVASMEFGCWAIPFFAGMLCDR 144 (213)
Q Consensus 89 -~~~~-~~~~~~~~~~l~~-------------------~~~~~~~~~~~~~---~~~~~~~~~~lg~~~g~~~~g~l~~~ 144 (213)
.+.. ..+..++...... +..+..+ ...+. ..++......+|..+|+.++|.+.++
T Consensus 106 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~ 184 (468)
T TIGR00788 106 SAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK 184 (468)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444 4444444322211 1122222 11111 11233333458999999999999999
Q ss_pred hccchhhhhhccc
Q psy3292 145 IGRKWTLLSTGML 157 (213)
Q Consensus 145 ~g~~~~~~~~~~~ 157 (213)
+||+..+++.+..
T Consensus 185 ~~~~~~f~~~a~l 197 (468)
T TIGR00788 185 TLTRILFLITAAL 197 (468)
T ss_pred cCcchHHHHHHHH
Confidence 9999998777655
No 125
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.64 E-value=1.1e-07 Score=84.08 Aligned_cols=107 Identities=17% Similarity=0.110 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH------------------hcCCC
Q psy3292 50 SSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY------------------LVSPD 110 (213)
Q Consensus 50 ~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~------------------~~~~~ 110 (213)
......+..++..+|.++.|+++||+|||+++.++.++..++. ...+.++...+.+ ...+.
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667778999999999999999999999999999988888 7777766444332 22334
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 111 SPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
.|...+....++..+...+|..+||++++.+.+. +....+++.++.
T Consensus 677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~ 722 (742)
T TIGR01299 677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAA 722 (742)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHH
Confidence 4555555566778888899999999999888764 344444444433
No 126
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.64 E-value=5.1e-07 Score=73.46 Aligned_cols=126 Identities=12% Similarity=0.092 Sum_probs=79.9
Q ss_pred chhhhhhhh-CCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhH--HHH------HHHHHHHHHH-HhhhcC
Q psy3292 29 SSPVLAYLV-SPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKW--TLL------STATLSAFSV-GQTFGW 98 (213)
Q Consensus 29 ~~~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~--~~~------~~~~~~~~~~-~~~~~~ 98 (213)
.....|.+. + +.+.++.+.++..+...++..++.++.|+++||+|||+ ... .+.....+.. .....+
T Consensus 234 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (399)
T TIGR00893 234 FLTWFPTYLVQ---ERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVN 310 (399)
T ss_pred HHHHHHHHHHH---HhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccch
Confidence 334455543 4 56788999999999999999999999999999999996 111 1111111111 111111
Q ss_pred chhHHHH-----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc-cchhhhhhccc
Q psy3292 99 SSPVLAY-----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-RKWTLLSTGML 157 (213)
Q Consensus 99 ~~~~l~~-----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g-~~~~~~~~~~~ 157 (213)
+...... ...+..|...+....+.......+|..+++.+.|++.|..| ++..+...+..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~ 387 (399)
T TIGR00893 311 IPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAAL 387 (399)
T ss_pred hHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHH
Confidence 2221111 12223333333444466777778999999999999999998 88887766655
No 127
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.64 E-value=3.3e-07 Score=74.05 Aligned_cols=113 Identities=15% Similarity=0.192 Sum_probs=81.7
Q ss_pred hhhhhhhCCCCC-CCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCc-hhHHHH--
Q psy3292 31 PVLAYLVSPDSP-VPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWS-SPVLAY-- 105 (213)
Q Consensus 31 ~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~-~~~l~~-- 105 (213)
...|.+.+ + ++.++.+.+...+...++..++.++.+++.||+|||+.+..+.....+.. ...+.++ .+...+
T Consensus 232 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (365)
T TIGR00900 232 ALFPYVQS---KYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLW 308 (365)
T ss_pred HHhHHHHH---HHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Confidence 34566654 3 67889999999999999999999999999999999999888877777766 6666553 443322
Q ss_pred ----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc
Q psy3292 106 ----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG 146 (213)
Q Consensus 106 ----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g 146 (213)
...+..|...+....+.......+|..+++.+.|.+.|++|
T Consensus 309 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 309 FAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 11112222223333466666778899999999999998865
No 128
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.61 E-value=8.1e-07 Score=71.16 Aligned_cols=122 Identities=16% Similarity=0.163 Sum_probs=83.8
Q ss_pred hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-----
Q psy3292 32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY----- 105 (213)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~----- 105 (213)
-.+.|.++...++.++++.+...+.+..+..+|.+..+++.||+|+|+.+..+..+..++. +....++......
T Consensus 162 w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g 241 (310)
T TIGR01272 162 FLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAMWFVLALG 241 (310)
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455543122468999999999999999999999999999999999998888877777666 5544433221111
Q ss_pred ------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhc
Q psy3292 106 ------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTG 155 (213)
Q Consensus 106 ------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~ 155 (213)
......|.. .....+. ..+..+|..++|++.|.++|+.|.+..+++..
T Consensus 242 ~~~s~i~P~~~s~a~~~~~~~-~~~asai-~~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 242 LFNSIMFPTIFSLALNALGRH-TSQGSGI-LCLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred HHHHHHHHHHHHHHHhhhhhh-hhhhHHH-HHHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 111111211 1222233 45677899999999999999999888876433
No 129
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.61 E-value=9.1e-07 Score=71.85 Aligned_cols=114 Identities=17% Similarity=0.085 Sum_probs=76.3
Q ss_pred hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhh-chhHHHHHHHHHHHHHH-HhhhcCchhHH--HH-
Q psy3292 31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI-GRKWTLLSTATLSAFSV-GQTFGWSSPVL--AY- 105 (213)
Q Consensus 31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~-Grr~~~~~~~~~~~~~~-~~~~~~~~~~l--~~- 105 (213)
...|.+.+ +.+.++.+.+...+...++..+++++.|++.||+ +||+.+..+..+..++. ...+..+.... .+
T Consensus 218 ~~lp~~~~---~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 294 (355)
T TIGR00896 218 GWLPAILI---SHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWAWALV 294 (355)
T ss_pred HHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34577776 5688999999999999999999999999999999 56667777766666666 55554432211 11
Q ss_pred ---hc--------CCCCCCCCCcc----hhhHHHHHHHHHHHHHHHHHHHHHhHhcc
Q psy3292 106 ---LV--------SPDSPVPMSED----ESSWVVASMEFGCWAIPFFAGMLCDRIGR 147 (213)
Q Consensus 106 ---~~--------~~~~~~~~~~~----~~~~~~~~~~lg~~~g~~~~g~l~~~~g~ 147 (213)
.. .........+. ..+...+...++..+||.+.|++.|+.|.
T Consensus 295 ~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 295 LGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN 351 (355)
T ss_pred HHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 00 00000111112 22444555667778999999999999874
No 130
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.61 E-value=8.6e-07 Score=72.86 Aligned_cols=123 Identities=13% Similarity=0.134 Sum_probs=85.5
Q ss_pred hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh-hcCchhHHHH----
Q psy3292 32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT-FGWSSPVLAY---- 105 (213)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~-~~~~~~~l~~---- 105 (213)
..|.+.+ ..+.++++.+.+.+...++..++.++.|++.||+|+|+.+..+..+..++. ... ..++.+....
T Consensus 222 ~~~~~~~---~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 298 (382)
T PRK10091 222 IKPYMMF---ISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFI 298 (382)
T ss_pred HHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455655 578899999999999999999999999999999999999888887777766 443 3343332211
Q ss_pred ----hcC-------CCCCCCCCcchhh--HHHHHHHHHHHHHHHHHHHHHhH-hccchhhhhhccc
Q psy3292 106 ----LVS-------PDSPVPMSEDESS--WVVASMEFGCWAIPFFAGMLCDR-IGRKWTLLSTGML 157 (213)
Q Consensus 106 ----~~~-------~~~~~~~~~~~~~--~~~~~~~lg~~~g~~~~g~l~~~-~g~~~~~~~~~~~ 157 (213)
... ...+....++..+ .....+.+|..+||.++|++.|. .|++..+......
T Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~ 364 (382)
T PRK10091 299 CCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALL 364 (382)
T ss_pred HHHHHHhhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHH
Confidence 000 0001111122222 23556789999999999999996 6788888776655
No 131
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.60 E-value=5.7e-07 Score=74.76 Aligned_cols=116 Identities=15% Similarity=0.011 Sum_probs=79.9
Q ss_pred hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcC--chhHHHH--
Q psy3292 31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGW--SSPVLAY-- 105 (213)
Q Consensus 31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~--~~~~l~~-- 105 (213)
...|.+.+ +.+.++.+.+...+...++..++.++.|++.||+|||+.+..+.++..+.. .....+ +......
T Consensus 252 ~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (426)
T PRK12307 252 GLLPTYLA---GEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACL 328 (426)
T ss_pred HHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 34566666 567888999999999999999999999999999999999888877766555 333222 2111111
Q ss_pred ----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccch
Q psy3292 106 ----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKW 149 (213)
Q Consensus 106 ----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~ 149 (213)
...+..|...+....+.......+|..+||.+.|++.|++|...
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~ 388 (426)
T PRK12307 329 FGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGA 388 (426)
T ss_pred HHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHH
Confidence 00111122222333456666778899999999999999988544
No 132
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.60 E-value=1.4e-06 Score=71.71 Aligned_cols=122 Identities=14% Similarity=-0.033 Sum_probs=83.8
Q ss_pred hhhhhCCCCCCCCChhhHHHHHHHHH-HHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH--Hhhh-----cCchhHHH
Q psy3292 33 LAYLVSPDSPVPMSEDESSWVVASME-FGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV--GQTF-----GWSSPVLA 104 (213)
Q Consensus 33 ~~~~~~~~~~~~~s~~~~~~~~s~~~-~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~--~~~~-----~~~~~~l~ 104 (213)
.+.+.+ |.+.++++.+++..... .+..++.++.|++.||+|+|+.+..+..+..+.. .... .++.....
T Consensus 231 ~~~~l~---~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (390)
T TIGR02718 231 SKLYLV---DAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAW 307 (390)
T ss_pred hhHHHH---hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHH
Confidence 344555 57899999999988776 4777889999999999999999887766542222 2111 11111111
Q ss_pred H------------------h-cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 105 Y------------------L-VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 105 ~------------------~-~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
. . .....+....+...+...+..++|..+|+.++|.+.|+.|++..+.....+
T Consensus 308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~ 379 (390)
T TIGR02718 308 SCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVL 379 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 0 1 111112234455567888889999999999999999999998888776655
No 133
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.60 E-value=1.4e-06 Score=71.67 Aligned_cols=121 Identities=13% Similarity=0.036 Sum_probs=84.5
Q ss_pred hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-----
Q psy3292 32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY----- 105 (213)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~----- 105 (213)
..|.+.+ +.+.++.+.+.+.+...++..+..++.+++.||+|+|+.+..+.....++. ...+.++.+.+.+
T Consensus 227 ~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 303 (382)
T PRK11128 227 FSAIYWQ---AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILH 303 (382)
T ss_pred HHHHHHH---HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3455556 678899999999999999999999999999999999999999988888888 7777777665544
Q ss_pred -------------hcCCCCCCCCCcchhhHHH-HHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 -------------LVSPDSPVPMSEDESSWVV-ASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 -------------~~~~~~~~~~~~~~~~~~~-~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
..... +........+... ....+|..+|+.++|.+.|++|. ..++..+..
T Consensus 304 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~ 367 (382)
T PRK11128 304 CGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALV 367 (382)
T ss_pred HHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHH
Confidence 00111 1101111122222 22345778999999999999987 444444433
No 134
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.59 E-value=7.1e-07 Score=72.79 Aligned_cols=123 Identities=17% Similarity=0.134 Sum_probs=79.2
Q ss_pred hhhhhhhh-CCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHH-HHH--Hhhh--cCchhHH
Q psy3292 30 SPVLAYLV-SPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSA-FSV--GQTF--GWSSPVL 103 (213)
Q Consensus 30 ~~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~-~~~--~~~~--~~~~~~l 103 (213)
....|.+. + +++.++.+.+...+...++..++.++.|+++||+|||+.+.....+.. .+. ...+ ..+.+..
T Consensus 239 ~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (394)
T TIGR00883 239 TTYLPTYLTQ---TLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLF 315 (394)
T ss_pred HHHHHHHHHH---hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34455554 5 567889999999999999999999999999999999998775544332 231 1112 1233322
Q ss_pred HH------------------hcCCCCCCCCCcchhhHHH-HHHHHHHHHHHHHHHHHHhHhc-cchhhhhhc
Q psy3292 104 AY------------------LVSPDSPVPMSEDESSWVV-ASMEFGCWAIPFFAGMLCDRIG-RKWTLLSTG 155 (213)
Q Consensus 104 ~~------------------~~~~~~~~~~~~~~~~~~~-~~~~lg~~~g~~~~g~l~~~~g-~~~~~~~~~ 155 (213)
.. ...+..|...+....+... ....+|..++|.+.|++.|+.| |+...+...
T Consensus 316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~ 387 (394)
T TIGR00883 316 FFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLA 387 (394)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHH
Confidence 11 1223334333333344433 3345788899999999999998 666554443
No 135
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.59 E-value=7.8e-07 Score=75.04 Aligned_cols=129 Identities=16% Similarity=0.115 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhh----hhchhHHH
Q psy3292 6 TRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD----RIGRKWTL 81 (213)
Q Consensus 6 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d----~~Grr~~~ 81 (213)
++...++....-..+.++.. .+..+.+.+ +++.++.+.+++..+..+...+.+++.|.++| |+|||+.+
T Consensus 4 ~~li~~~~~~~Giq~~~~l~----~~~l~~yl~---~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~ 76 (477)
T TIGR01301 4 RKLLRVASVAAGVQFGWALQ----LSLLTPYVQ---ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPF 76 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHH
Confidence 44444444433334443332 334444555 68899999999999999999999999999999 59999998
Q ss_pred HHH-HHHHHHHH-HhhhcCchh-----------------HHHH------------------hcCCCCCCCCC--cchhhH
Q psy3292 82 LST-ATLSAFSV-GQTFGWSSP-----------------VLAY------------------LVSPDSPVPMS--EDESSW 122 (213)
Q Consensus 82 ~~~-~~~~~~~~-~~~~~~~~~-----------------~l~~------------------~~~~~~~~~~~--~~~~~~ 122 (213)
+.. .....++. ...++++.. ...+ +..+..|...+ +...++
T Consensus 77 il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~ 156 (477)
T TIGR01301 77 IAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAY 156 (477)
T ss_pred HHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHH
Confidence 876 44455555 666655421 1110 22333333322 234456
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3292 123 VVASMEFGCWAIPFFAGML 141 (213)
Q Consensus 123 ~~~~~~lg~~~g~~~~g~l 141 (213)
.....++|..+|+.+++..
T Consensus 157 ~~~~~~lG~ilg~~~g~~~ 175 (477)
T TIGR01301 157 FSFFMAIGNVLGYAAGAYS 175 (477)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6677788999998888765
No 136
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.58 E-value=7.4e-07 Score=75.09 Aligned_cols=124 Identities=13% Similarity=0.067 Sum_probs=84.6
Q ss_pred hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh--hchhHHHHHH--HHHHHHHH-HhhhcCchhHHHH
Q psy3292 31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR--IGRKWTLLST--ATLSAFSV-GQTFGWSSPVLAY 105 (213)
Q Consensus 31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~--~Grr~~~~~~--~~~~~~~~-~~~~~~~~~~l~~ 105 (213)
..+|.+.+ +.+.++.+.+++.++..++..+++++.|.++|| +++|+...+. .....+.. .....++.+.+.+
T Consensus 262 ~~l~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i 338 (455)
T TIGR00892 262 IFLVPYAK---DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVI 338 (455)
T ss_pred HHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 44566666 678999999999999999999999999999997 3344433333 23333444 4445566554332
Q ss_pred ------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc-cchhhhhhccc
Q psy3292 106 ------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-RKWTLLSTGML 157 (213)
Q Consensus 106 ------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g-~~~~~~~~~~~ 157 (213)
...+..|........+...+...+|..+|+.++|.+.|..| ++..+.+.++.
T Consensus 339 ~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~ 409 (455)
T TIGR00892 339 YCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSI 409 (455)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHH
Confidence 11112222333344567777788999999999999999884 88888877765
No 137
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.57 E-value=3.7e-07 Score=77.07 Aligned_cols=123 Identities=15% Similarity=0.087 Sum_probs=77.4
Q ss_pred hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc--Cc-h--hHH-H
Q psy3292 32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG--WS-S--PVL-A 104 (213)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~--~~-~--~~l-~ 104 (213)
..|.+.+ +.+.++.+..+......++..++.++.++++||+|||+.+..+..+..++. ..... .+ . ... .
T Consensus 293 ~~p~i~~---~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~ 369 (479)
T PRK10077 293 YAPEIFK---TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLS 369 (479)
T ss_pred HHHHHHH---HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 3466666 667777777777777888889999999999999999999999888887776 54322 11 1 111 0
Q ss_pred H------h-----------cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHH------HHhHhccchhhhhhccc
Q psy3292 105 Y------L-----------VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGM------LCDRIGRKWTLLSTGML 157 (213)
Q Consensus 105 ~------~-----------~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~------l~~~~g~~~~~~~~~~~ 157 (213)
. . ..+..|...+....+.......+|..+++.+.+. +.|.+|++..+++.++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 445 (479)
T PRK10077 370 MLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM 445 (479)
T ss_pred HHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHH
Confidence 1 1 1111121222223344555556666666555443 34678888888776655
No 138
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.55 E-value=9.8e-07 Score=75.44 Aligned_cols=125 Identities=17% Similarity=0.096 Sum_probs=100.0
Q ss_pred hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH----
Q psy3292 31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY---- 105 (213)
Q Consensus 31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~---- 105 (213)
..+|.+.+ +.++.++...|++.+++.+|+.+|+++.+.+.+|+++++.+..+.+...+.. ..+++++.+....
T Consensus 239 aLlPl~a~--~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l 316 (524)
T PF05977_consen 239 ALLPLFAR--DVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFL 316 (524)
T ss_pred HhhhHHHH--HHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 45676643 1568899999999999999999999999999999999999999998888888 8889888776544
Q ss_pred --------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 --------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 --------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
..+...|.+......+...+....+..+|.++.|.++|.+|-+..+.+.++.
T Consensus 317 ~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~ 382 (524)
T PF05977_consen 317 AGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAA 382 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 2233445555555566777777788899999999999999999888766544
No 139
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.54 E-value=8.3e-07 Score=73.09 Aligned_cols=142 Identities=10% Similarity=0.007 Sum_probs=90.9
Q ss_pred HHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHH--HHHHHHHhhhhhhh-HHhhhhhchhHHHHHHHHHHH
Q psy3292 13 MSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVV--ASMEFGCWAIPFFA-GMLCDRIGRKWTLLSTATLSA 89 (213)
Q Consensus 13 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~--s~~~~g~~ig~~~~-g~l~d~~Grr~~~~~~~~~~~ 89 (213)
.......+.+|.-.+...|.+|.+.+ +.+.+.++.|.+. ++..+...+.+++. ++..||+||||..++...+..
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~---~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLR---EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHH
Confidence 34455578889999999999999999 8899999999973 56677777777777 557999999998766554322
Q ss_pred H-HH-Hhh---hcCc-h-hHHHH------h---c----CCCCCCCCCcchhhHHHHH----HHHHHHHHHHHHHHHHhHh
Q psy3292 90 F-SV-GQT---FGWS-S-PVLAY------L---V----SPDSPVPMSEDESSWVVAS----MEFGCWAIPFFAGMLCDRI 145 (213)
Q Consensus 90 ~-~~-~~~---~~~~-~-~~l~~------~---~----~~~~~~~~~~~~~~~~~~~----~~lg~~~g~~~~g~l~~~~ 145 (213)
. .. ... ...+ . +.+.. . . ....+...++++.+...+. ..+|..+|+...+++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~ 160 (390)
T TIGR02718 81 SACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF 160 (390)
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 12 222 2222 1 11111 0 0 0011223344444443333 3556666766677889999
Q ss_pred ccchhhhhhccc
Q psy3292 146 GRKWTLLSTGML 157 (213)
Q Consensus 146 g~~~~~~~~~~~ 157 (213)
|||..+++.+..
T Consensus 161 gw~~~f~~~a~l 172 (390)
T TIGR02718 161 GQRPAFLLVACV 172 (390)
T ss_pred CHHHHHHHHHHH
Confidence 999999887766
No 140
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.53 E-value=2.9e-06 Score=70.99 Aligned_cols=124 Identities=13% Similarity=-0.034 Sum_probs=78.1
Q ss_pred hhhhhhh-CCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhh--ch-hHHHHH---HHHHHHHHHHhhhcCchhHH
Q psy3292 31 PVLAYLV-SPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI--GR-KWTLLS---TATLSAFSVGQTFGWSSPVL 103 (213)
Q Consensus 31 ~~~~~~~-~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~--Gr-r~~~~~---~~~~~~~~~~~~~~~~~~~l 103 (213)
...|.+. + +.+.++.+.+...+.+.++..+|.++.|+++||+ ++ |+.... +.....+........+....
T Consensus 264 ~~~p~~l~~---~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (434)
T PRK11663 264 DWGNLYMSE---TLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQ 340 (434)
T ss_pred HHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHH
Confidence 3456555 4 5788999999999999999999999999999999 33 332221 11111111111111121111
Q ss_pred HH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 104 AY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 104 ~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
.. ...+..|........+.......+|..++|.+.|++.|+.|++..+...+++
T Consensus 341 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~ 412 (434)
T PRK11663 341 AACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIA 412 (434)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHH
Confidence 00 1112222223334446677778899999999999999999999888766655
No 141
>PRK10054 putative transporter; Provisional
Probab=98.51 E-value=1.5e-06 Score=71.94 Aligned_cols=115 Identities=10% Similarity=0.043 Sum_probs=80.2
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc-CchhHHHH----------h---
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG-WSSPVLAY----------L--- 106 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~-~~~~~l~~----------~--- 106 (213)
+.+.++...+...+...+.....+++.|.+.||+++|+.+..+..+..++. ...+. ++.+.+.+ .
T Consensus 238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p 317 (395)
T PRK10054 238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAP 317 (395)
T ss_pred ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHh
Confidence 456677788888888888878888999999999999999988888888777 66654 34443322 0
Q ss_pred -----cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 107 -----VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 107 -----~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
.....|........+. .+...+|..+||.++|.+.|+.|....+...+..
T Consensus 318 ~~~~~~~~~~p~~~~~~~~~~-~~~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~ 372 (395)
T PRK10054 318 GEYMLIDHIAPPGMKASYFSA-QSLGWLGAAINPLVSGVILTTLPPWSLFVILALA 372 (395)
T ss_pred hHHHHHHHhCCcccceehHhH-HHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHH
Confidence 1112233333332332 2355689999999999999999988777665444
No 142
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.51 E-value=1.2e-06 Score=72.53 Aligned_cols=111 Identities=21% Similarity=0.182 Sum_probs=80.5
Q ss_pred cccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhch-hHHHHHHHHHHHHHH-HhhhcCchh
Q psy3292 24 QTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGR-KWTLLSTATLSAFSV-GQTFGWSSP 101 (213)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Gr-r~~~~~~~~~~~~~~-~~~~~~~~~ 101 (213)
+..|...|..+.+.+ +.+.|+.|.|.+.+...+...++++++|.++||.++ |+.+.++.+...+.. .....++++
T Consensus 16 ~~~G~~~p~~~~~L~---~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~ 92 (400)
T PF03825_consen 16 FAYGAFLPYLPLYLE---SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFW 92 (400)
T ss_pred HHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 335566678888888 889999999999999999999999999999999874 666667666666666 666677766
Q ss_pred HHHH-------hcCCCCCC---------CCCcchhhHHHHHHHHHHHHHHHH
Q psy3292 102 VLAY-------LVSPDSPV---------PMSEDESSWVVASMEFGCWAIPFF 137 (213)
Q Consensus 102 ~l~~-------~~~~~~~~---------~~~~~~~~~~~~~~~lg~~~g~~~ 137 (213)
.+.. ...+..|. ..++.+.+..+...++|..++...
T Consensus 93 ~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~ 144 (400)
T PF03825_consen 93 WLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALA 144 (400)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHH
Confidence 5544 11111111 123445577888888888887665
No 143
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.49 E-value=2e-06 Score=69.02 Aligned_cols=144 Identities=17% Similarity=0.126 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHH
Q psy3292 10 LAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSA 89 (213)
Q Consensus 10 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~ 89 (213)
.....+.+..+.---.....+|.++.+.+ |++.|.+..+.++++..+...+.+++.+++++|+|-++.+.++.++..
T Consensus 12 ~li~gIvlia~NLR~~itsvgPLL~~Ir~---~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~ 88 (395)
T COG2807 12 LLLAGIVLIAFNLRPAITSVGPLLDEIRQ---DLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIA 88 (395)
T ss_pred HHHHHHHHHHhccchhhhhhhhhHHHHHH---HhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333444433445667788899998 999999999999999999999999999999999999999999999999
Q ss_pred HHH-HhhhcCchhHHHH----------hcCCCCCCCCC-------cchhhHHHHHHHHHHHHHHHHHHHHHhHh-ccchh
Q psy3292 90 FSV-GQTFGWSSPVLAY----------LVSPDSPVPMS-------EDESSWVVASMEFGCWAIPFFAGMLCDRI-GRKWT 150 (213)
Q Consensus 90 ~~~-~~~~~~~~~~l~~----------~~~~~~~~~~~-------~~~~~~~~~~~~lg~~~g~~~~g~l~~~~-g~~~~ 150 (213)
++. +-... +...++. ..+...|..++ ....+.++....+|.++++-+.-.++++. |||..
T Consensus 89 ~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~a 167 (395)
T COG2807 89 AGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGA 167 (395)
T ss_pred HHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHH
Confidence 999 77666 3333333 22223333222 22335566666778888888888888887 79998
Q ss_pred hhhhccc
Q psy3292 151 LLSTGML 157 (213)
Q Consensus 151 ~~~~~~~ 157 (213)
+.+=+.+
T Consensus 168 L~~WAl~ 174 (395)
T COG2807 168 LGFWALL 174 (395)
T ss_pred HHHHHHH
Confidence 7655555
No 144
>PRK15075 citrate-proton symporter; Provisional
Probab=98.48 E-value=5.2e-06 Score=69.49 Aligned_cols=117 Identities=16% Similarity=0.111 Sum_probs=74.6
Q ss_pred hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH--Hhh---hcCchhHH--
Q psy3292 31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV--GQT---FGWSSPVL-- 103 (213)
Q Consensus 31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~--~~~---~~~~~~~l-- 103 (213)
...|.+.+ +.++.++.+.++....+.++..++.++.|+++||+|||+.+..+..+..+.. ... ..++....
T Consensus 259 ~~~p~~l~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (434)
T PRK15075 259 VYTPTFGK--TVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLA 336 (434)
T ss_pred HHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 34566654 0368888889999889999999999999999999999998877654432211 111 12222111
Q ss_pred --HH--------------hcCCCCCCCCCcchhhHHHHHHHH-HHHHHHHHHHHHHhHhccch
Q psy3292 104 --AY--------------LVSPDSPVPMSEDESSWVVASMEF-GCWAIPFFAGMLCDRIGRKW 149 (213)
Q Consensus 104 --~~--------------~~~~~~~~~~~~~~~~~~~~~~~l-g~~~g~~~~g~l~~~~g~~~ 149 (213)
.. ...+..|...+....+...+.... +..++|.+.|++.|+.|+++
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~ 399 (434)
T PRK15075 337 VELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKA 399 (434)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCch
Confidence 00 122334444454444554444443 46679999999999998754
No 145
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.47 E-value=6e-06 Score=68.29 Aligned_cols=121 Identities=15% Similarity=0.146 Sum_probs=79.9
Q ss_pred hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHH-HHHHH-HhhhcCchhHHHH----
Q psy3292 32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATL-SAFSV-GQTFGWSSPVLAY---- 105 (213)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~-~~~~~-~~~~~~~~~~l~~---- 105 (213)
..|.+.+ +++.++++.+...+...++..++.++.+++.||.+|+ .+...... ..... .....++.+.+..
T Consensus 239 ~~p~~~~---~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 314 (394)
T PRK10213 239 IRPVYMN---LAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL-ALAGAPLVLAVSALVLTLWGSDKIVATGVAII 314 (394)
T ss_pred HHHHHHH---hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3477776 6788999999999999999999999999999996544 43333333 33333 3334444433322
Q ss_pred --------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 --------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 --------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
......|. ..+...+...+..++|..+|+.++|++.|+.|.+..+...+..
T Consensus 315 ~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~ 379 (394)
T PRK10213 315 WGLTFALVPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTL 379 (394)
T ss_pred HHHHHHhhhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHH
Confidence 01111121 1122334556677899999999999999999988777766544
No 146
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.45 E-value=3.2e-06 Score=71.66 Aligned_cols=115 Identities=14% Similarity=0.033 Sum_probs=70.6
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhH-------HHHHHHHHHHHHH-HhhhcCchhHHHH------h-
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKW-------TLLSTATLSAFSV-GQTFGWSSPVLAY------L- 106 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~-------~~~~~~~~~~~~~-~~~~~~~~~~l~~------~- 106 (213)
+++.++.+.+.+.+...++..++.++.|+++||+|||+ ...+...+..+.. ......+.+...+ .
T Consensus 282 ~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~ 361 (476)
T PLN00028 282 RFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIF 361 (476)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999762 2222222222333 3333433322211 0
Q ss_pred ----cC---CCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH---hccchhhhhhccc
Q psy3292 107 ----VS---PDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR---IGRKWTLLSTGML 157 (213)
Q Consensus 107 ----~~---~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~---~g~~~~~~~~~~~ 157 (213)
.. ...+ ...++..+...+..+.+..+|+++++++.+. .+++..+.+.+++
T Consensus 362 ~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~ 421 (476)
T PLN00028 362 VQAACGATFGIVP-FVSRRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVM 421 (476)
T ss_pred HHHhhhhhcccCc-ccChhhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHH
Confidence 00 0111 2233445666666666777777777777653 3577777766554
No 147
>TIGR00895 2A0115 benzoate transport.
Probab=98.45 E-value=2.3e-06 Score=69.95 Aligned_cols=108 Identities=23% Similarity=0.258 Sum_probs=70.3
Q ss_pred hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH----
Q psy3292 31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY---- 105 (213)
Q Consensus 31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~---- 105 (213)
...|.+.+ +.+.++.+.+...+...++..++.++.|++.||+|||+............. ......+......
T Consensus 271 ~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (398)
T TIGR00895 271 NWLPKLMV---ELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAI 347 (398)
T ss_pred HHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 34466666 678889999999999999999999999999999999955444433333333 3222333332222
Q ss_pred --------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q psy3292 106 --------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGML 141 (213)
Q Consensus 106 --------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l 141 (213)
...+..|...+....+...+...+|..+||.+.|++
T Consensus 348 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 348 AGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 122223333333344666667778888888888765
No 148
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.44 E-value=6.4e-06 Score=68.69 Aligned_cols=103 Identities=16% Similarity=0.079 Sum_probs=73.1
Q ss_pred ChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcC-chhHHHH------------------
Q psy3292 46 SEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGW-SSPVLAY------------------ 105 (213)
Q Consensus 46 s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~-~~~~l~~------------------ 105 (213)
++.+.+++.+...++..++.++.++++||+|||+.+..+..+..++. ...+.+ +.+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888899999999999999999999999999988887777 655543 3232221
Q ss_pred hcCCCCCC-------CCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccc
Q psy3292 106 LVSPDSPV-------PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRK 148 (213)
Q Consensus 106 ~~~~~~~~-------~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~ 148 (213)
...+..+. .......+.......+|..+|+.+.|++.+..|++
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 11222221 11222335566667889999999999999988874
No 149
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.43 E-value=2.9e-06 Score=71.09 Aligned_cols=124 Identities=12% Similarity=0.031 Sum_probs=74.7
Q ss_pred hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHH---HHHH-Hhhh--cCchhHHHH
Q psy3292 32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLS---AFSV-GQTF--GWSSPVLAY 105 (213)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~---~~~~-~~~~--~~~~~~l~~ 105 (213)
..|.+.+ + ..+.++.+.++..+.+.++..++.++.|+++||+|+++....+.... .++. .... ..+.+....
T Consensus 273 ~~p~~l~-~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (438)
T TIGR00712 273 WSPTYLK-E-VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMI 350 (438)
T ss_pred hHHHHHH-H-ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 4455554 0 35788999999999999999999999999999997543222222111 1111 1111 112221111
Q ss_pred ------------------hcCCCCCCCCCcchhhHHHHHHHHH-HHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 ------------------LVSPDSPVPMSEDESSWVVASMEFG-CWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 ------------------~~~~~~~~~~~~~~~~~~~~~~~lg-~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
...+..|...+....+.......+| ..+||.+.|.+.|..|+...+.+....
T Consensus 351 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~ 421 (438)
T TIGR00712 351 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG 421 (438)
T ss_pred HHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHH
Confidence 1112223333444456666666665 468999999999999988887655444
No 150
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=98.43 E-value=1.3e-06 Score=55.69 Aligned_cols=75 Identities=15% Similarity=0.126 Sum_probs=66.8
Q ss_pred cccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHH
Q psy3292 26 FGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVL 103 (213)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l 103 (213)
--.+.|++|.+++ |.+.|.++.+++.+.+.+|.++|++...++.++..+++.+..+.+...+.. .+++..+.+..
T Consensus 8 RFayTplLP~M~~---~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 8 RFAYTPLLPLMQA---DGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred HHHHHhHhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 3345789999999 999999999999999999999999999999999888888999999999988 88888776554
No 151
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.43 E-value=4e-06 Score=71.75 Aligned_cols=145 Identities=20% Similarity=0.251 Sum_probs=101.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHH
Q psy3292 3 SGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLL 82 (213)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~ 82 (213)
+..+..|....+..++...+.....| +.. +..-|+...+++.++..+-..+.+++.|.++||+.||+.++
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~w-------lv~---~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili 79 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAW-------LVT---QLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILI 79 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH-------HHH---HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 44566777777777777776444433 333 34568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-Hhhh----c-CchhHHHH----------h----cCCCCCCCCCcc----hhhHHHHHHHHHHHHHHHHH
Q psy3292 83 STATLSAFSV-GQTF----G-WSSPVLAY----------L----VSPDSPVPMSED----ESSWVVASMEFGCWAIPFFA 138 (213)
Q Consensus 83 ~~~~~~~~~~-~~~~----~-~~~~~l~~----------~----~~~~~~~~~~~~----~~~~~~~~~~lg~~~g~~~~ 138 (213)
.+-++..+.. ...+ . .+.+.+++ + .....|..+.++ ..+......++...+||.++
T Consensus 80 ~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalg 159 (524)
T PF05977_consen 80 LSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALG 159 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHH
Confidence 9888765544 3222 1 23344433 0 011112222222 23556667888999999999
Q ss_pred HHHHhHhccchhhhhhccc
Q psy3292 139 GMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 139 g~l~~~~g~~~~~~~~~~~ 157 (213)
|.+...+|-.+.+.+.++.
T Consensus 160 G~Lva~~G~~~~f~inals 178 (524)
T PF05977_consen 160 GILVAFFGAAAAFLINALS 178 (524)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999998888877665
No 152
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.43 E-value=8.2e-06 Score=65.56 Aligned_cols=64 Identities=25% Similarity=0.207 Sum_probs=56.9
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHHHhhhcCchhHHHH
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSVGQTFGWSSPVLAY 105 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~l~~ 105 (213)
.++.++.+++.+...-+...++...+.|.++||+|||+.-+..++++.++++.-..++++.+++
T Consensus 63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~ 126 (354)
T PF05631_consen 63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLL 126 (354)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 5899999999999999999999999999999999999999999999988885556677777766
No 153
>KOG0569|consensus
Probab=98.41 E-value=1.1e-05 Score=67.98 Aligned_cols=163 Identities=14% Similarity=0.099 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHH
Q psy3292 5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST 84 (213)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~ 84 (213)
.++...+.+...++.-..|.+.-. ...-.+.+ +-++++.+..+.+.....-..+.++....+.||+|||+.++.+
T Consensus 267 lR~~~~i~~~v~~~qq~sGi~ai~--~Yst~i~~---~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~ 341 (485)
T KOG0569|consen 267 LRRPLLIGIVVSFAQQFSGINAIF--FYSTSIFK---TAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLIS 341 (485)
T ss_pred hhHHHHHHHHHHHHHHhcCcceeH--HHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 344444555555554444443322 22233334 5689999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-Hhhhc---Cchh---HH--HH--------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q psy3292 85 ATLSAFSV-GQTFG---WSSP---VL--AY--------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIP 135 (213)
Q Consensus 85 ~~~~~~~~-~~~~~---~~~~---~l--~~--------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~ 135 (213)
..++.+.. .+... .+.. .- .+ +..+..|...+..+.+.......+...+-.
T Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~ 421 (485)
T KOG0569|consen 342 LSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVG 421 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHH
Confidence 98887777 54432 1111 11 11 233344444444444555555555555555
Q ss_pred HHHHHHHhHhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHH
Q psy3292 136 FFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGR 179 (213)
Q Consensus 136 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~ 179 (213)
+....+.+.+|- ..++...+++. +...+....+||++
T Consensus 422 ~~fp~l~~~~g~-~~filF~i~~~------~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 422 FAFPPLQNVIGP-YVFILFVIPLA------IFLIYLYRYLPETK 458 (485)
T ss_pred HHHHHHHHHhcc-hhhHHHHHHHH------HHHHHHHHhCcccC
Confidence 556666777886 66666555532 12223344459987
No 154
>PRK10504 putative transporter; Provisional
Probab=98.41 E-value=1e-05 Score=68.35 Aligned_cols=118 Identities=15% Similarity=0.129 Sum_probs=83.0
Q ss_pred chhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc---CchhHHH
Q psy3292 29 SSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG---WSSPVLA 104 (213)
Q Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~---~~~~~l~ 104 (213)
.....|.+.+ ...+.++.+.++......++..++.++.+++.||+|||+.+..+..+..+.. ...+. .+...+.
T Consensus 280 ~~~~~~~~~~--~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (471)
T PRK10504 280 LPFMTPVFLQ--IGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLP 357 (471)
T ss_pred HHHHHHHHHH--HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 3344565543 1367889999999999999999999999999999999999998888777766 54442 2222111
Q ss_pred ---H---------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccc
Q psy3292 105 ---Y---------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRK 148 (213)
Q Consensus 105 ---~---------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~ 148 (213)
. ......|........+.......+|..+|+.+.|.+.+..|..
T Consensus 358 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 358 FVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 1 1112233334444557777778899999999999999887763
No 155
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.40 E-value=1.3e-05 Score=65.96 Aligned_cols=107 Identities=10% Similarity=-0.008 Sum_probs=79.6
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH---------------
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY--------------- 105 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~--------------- 105 (213)
+++.++.+.+.+.+...++..++.++.+++.||+|||+.+..+..+..++. ...+.++......
T Consensus 233 ~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 312 (392)
T PRK10473 233 QMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGV 312 (392)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 567888999999999999999999999999999999999998888877777 6665544332111
Q ss_pred -hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhh
Q psy3292 106 -LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTL 151 (213)
Q Consensus 106 -~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~ 151 (213)
......|. +...+...+...++..+|+.+++++.+++|.....
T Consensus 313 ~~~~~~~~~---~~~~g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~ 356 (392)
T PRK10473 313 AMSQALGPF---SLRAGVASSTLGIAQVCGSSLWIWLAAVLGISAWN 356 (392)
T ss_pred HHHHHhccC---cccccHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 11111221 22346667778889999999999999999875433
No 156
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.40 E-value=2.1e-06 Score=73.19 Aligned_cols=90 Identities=17% Similarity=0.021 Sum_probs=59.2
Q ss_pred HHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcC-----chh-HHHH----------------hcCCCC
Q psy3292 55 ASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGW-----SSP-VLAY----------------LVSPDS 111 (213)
Q Consensus 55 s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~-----~~~-~l~~----------------~~~~~~ 111 (213)
....++..++.++.+++.||+|||+.++.+..+..+.. ..++.. +.. .... ...+..
T Consensus 342 ~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ 421 (502)
T TIGR00887 342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF 421 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence 34455677788999999999999999888877766655 443321 111 1111 112333
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy3292 112 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR 144 (213)
Q Consensus 112 ~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~ 144 (213)
|...+....+.......+|..+++.+.+++.|.
T Consensus 422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 454 (502)
T TIGR00887 422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQH 454 (502)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcc
Confidence 444444555777777888999999999988874
No 157
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=98.38 E-value=3.9e-06 Score=69.89 Aligned_cols=135 Identities=16% Similarity=0.226 Sum_probs=96.5
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh-hchhHHHHHHHHHHHHHH-HhhhcC--chhHHHH------------
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR-IGRKWTLLSTATLSAFSV-GQTFGW--SSPVLAY------------ 105 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~~~~-~~~~~~--~~~~l~~------------ 105 (213)
+++.+++++.-+.+.+..-.-..+++.|+++|| .|+|+++.++.+++.++- ..+.+. ....+.+
T Consensus 55 gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~ 134 (498)
T COG3104 55 GLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLF 134 (498)
T ss_pred cCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccc
Confidence 367999999999999999899999999999999 799999999999999999 777663 3333333
Q ss_pred ------hcCCCCCCCC--CcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccchhhhHHHHHHHHHHHHHHH
Q psy3292 106 ------LVSPDSPVPM--SEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRI 177 (213)
Q Consensus 106 ------~~~~~~~~~~--~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e 177 (213)
+..+..|+.- ++...+......++|..++|++.+++++++||...|-..++- ....+..+ +-
T Consensus 135 K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavG--------m~~gl~~f--~~ 204 (498)
T COG3104 135 KPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVG--------MIIGLVIF--LL 204 (498)
T ss_pred cccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHH--------HHHHHHHH--HH
Confidence 1111112111 222234444556799999999999999999999888666544 12222333 66
Q ss_pred HHHHHHhhcC
Q psy3292 178 GRKWTLLSTG 187 (213)
Q Consensus 178 s~~~~g~~~g 187 (213)
.|++. ...+
T Consensus 205 ~~r~~-~~~~ 213 (498)
T COG3104 205 GRRHV-KGIG 213 (498)
T ss_pred ccchh-cCCC
Confidence 77777 5544
No 158
>PRK09952 shikimate transporter; Provisional
Probab=98.37 E-value=1.7e-05 Score=66.57 Aligned_cols=113 Identities=12% Similarity=0.024 Sum_probs=66.9
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhh---cCc-hhHHHH-----------
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTF---GWS-SPVLAY----------- 105 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~---~~~-~~~l~~----------- 105 (213)
+++.++...........+...++.++.|+++||+|||+.+..+.++..+.. .... ..+ ......
T Consensus 280 ~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 359 (438)
T PRK09952 280 NLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDM 359 (438)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Confidence 567777766666666667778889999999999999999887766554443 2221 122 222111
Q ss_pred -------hcCCCCCCCCCcchhhHHHHH-HHHHHHHHHHHHHHHHhHhc--cchhhhhh
Q psy3292 106 -------LVSPDSPVPMSEDESSWVVAS-MEFGCWAIPFFAGMLCDRIG--RKWTLLST 154 (213)
Q Consensus 106 -------~~~~~~~~~~~~~~~~~~~~~-~~lg~~~g~~~~g~l~~~~g--~~~~~~~~ 154 (213)
...+..|...+....+..... ..+|..++|.+.+++.|..+ |+..+...
T Consensus 360 ~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~ 418 (438)
T PRK09952 360 VVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYL 418 (438)
T ss_pred HHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 112233332222233333333 33678889999999988653 44444433
No 159
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.37 E-value=2.4e-06 Score=71.02 Aligned_cols=126 Identities=13% Similarity=0.009 Sum_probs=78.6
Q ss_pred hhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHH-HHHHHHHHHHHH-HhhhcCchhH-HH-H
Q psy3292 30 SPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWT-LLSTATLSAFSV-GQTFGWSSPV-LA-Y 105 (213)
Q Consensus 30 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~-~~~~~~~~~~~~-~~~~~~~~~~-l~-~ 105 (213)
....|.+.+ +.+.+.++.+.+...+...++..+|.++.|+++||++||+. .........++. ......+... +. .
T Consensus 262 ~~~~p~~l~-~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (412)
T TIGR02332 262 NIWTPQILQ-SFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGI 340 (412)
T ss_pred HHHHHHHHH-hcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 345577766 22235678889999999999999999999999999997764 333333333333 2222222111 11 0
Q ss_pred ----h----------c--CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc-cchhhhhhcc
Q psy3292 106 ----L----------V--SPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-RKWTLLSTGM 156 (213)
Q Consensus 106 ----~----------~--~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g-~~~~~~~~~~ 156 (213)
. . .+..|...+....+.......+|..++|.+.|.+.|..| |++.++....
T Consensus 341 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~ 408 (412)
T TIGR02332 341 IMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAA 408 (412)
T ss_pred HHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence 0 0 011121222233466777788899999999999999885 8887765443
No 160
>PRK10133 L-fucose transporter; Provisional
Probab=98.37 E-value=8.4e-06 Score=68.42 Aligned_cols=110 Identities=15% Similarity=0.038 Sum_probs=78.3
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH---------------
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY--------------- 105 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~--------------- 105 (213)
..+.++.+.+.....+.++..+|.++.+++.||+|||+++..+..+..+.. ...+.++...+..
T Consensus 289 ~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~ 368 (438)
T PRK10133 289 IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTI 368 (438)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999888877776666 5555544221111
Q ss_pred --hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc-cchhhhh
Q psy3292 106 --LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-RKWTLLS 153 (213)
Q Consensus 106 --~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g-~~~~~~~ 153 (213)
...+..+.. .+...+... +..+|..+++.+.|.+.|..| -+..+++
T Consensus 369 ~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v 417 (438)
T PRK10133 369 FSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELI 417 (438)
T ss_pred HHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHH
Confidence 122222221 223334443 444688889999999999988 5666654
No 161
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.36 E-value=4.7e-06 Score=67.59 Aligned_cols=110 Identities=18% Similarity=0.176 Sum_probs=70.8
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhch-hHHHHH-HH-HHHHHHH-Hhhh--cCchhHHHH----------
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGR-KWTLLS-TA-TLSAFSV-GQTF--GWSSPVLAY---------- 105 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Gr-r~~~~~-~~-~~~~~~~-~~~~--~~~~~~l~~---------- 105 (213)
.++.++.+.+...+...++..++.++.|++.||.++ |+.... .. ....... .... ..+......
T Consensus 246 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 325 (379)
T TIGR00881 246 EKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVY 325 (379)
T ss_pred HhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHh
Confidence 567889999999999999999999999999998643 332222 11 1112222 2111 122221111
Q ss_pred --------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhh
Q psy3292 106 --------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTL 151 (213)
Q Consensus 106 --------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~ 151 (213)
...+..|...+....+.......+|..+++.+.|.+.|++||++.+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 326 GPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred hhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 1122334344444556777778899999999999999999998754
No 162
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.34 E-value=1.3e-06 Score=72.76 Aligned_cols=65 Identities=14% Similarity=-0.037 Sum_probs=51.7
Q ss_pred hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh----hchhH-HHHHHHHHHHHHH-HhhhcCc
Q psy3292 32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR----IGRKW-TLLSTATLSAFSV-GQTFGWS 99 (213)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~----~Grr~-~~~~~~~~~~~~~-~~~~~~~ 99 (213)
..+.+.+ +++.++.+.+++.++..+..++..++.|+++|| +|||| .++.+.....++. ...+.++
T Consensus 22 l~~~~~~---~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~ 92 (437)
T TIGR00792 22 LLFFYTD---VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPD 92 (437)
T ss_pred HHHHHHH---ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCC
Confidence 3466676 789999999999999999999999999999997 68755 4566666676666 5555543
No 163
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.34 E-value=5.4e-06 Score=67.80 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=84.3
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhh--chhHHHHHHHHH-HHHHH-HhhhcCch--hHHHH----------
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI--GRKWTLLSTATL-SAFSV-GQTFGWSS--PVLAY---------- 105 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~--Grr~~~~~~~~~-~~~~~-~~~~~~~~--~~l~~---------- 105 (213)
..+.+....++..+++-.+++.|+++.|+++||. |||...-+.+.+ ..++. ..-.+++. .+..+
T Consensus 282 ~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~Iy 361 (448)
T COG2271 282 VKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIY 361 (448)
T ss_pred hcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999999994 676554333333 33333 33344433 33222
Q ss_pred --------hcCCCCCCCCCcchhhHHHHHHHH-HHHHHHHHHHHHHhHhccchhhhhhcccc
Q psy3292 106 --------LVSPDSPVPMSEDESSWVVASMEF-GCWAIPFFAGMLCDRIGRKWTLLSTGMLC 158 (213)
Q Consensus 106 --------~~~~~~~~~~~~~~~~~~~~~~~l-g~~~g~~~~g~l~~~~g~~~~~~~~~~~~ 158 (213)
...+..|........|....+..+ |...+....|+++|.+||...|+...+.+
T Consensus 362 GPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a 423 (448)
T COG2271 362 GPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAA 423 (448)
T ss_pred hHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHH
Confidence 345566666667777777766666 88888888899999999999987766553
No 164
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.34 E-value=1.5e-05 Score=65.91 Aligned_cols=108 Identities=9% Similarity=-0.211 Sum_probs=70.1
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc-----CchhHHHH----------
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG-----WSSPVLAY---------- 105 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~-----~~~~~l~~---------- 105 (213)
+++.++.+.++......++..++.++.++++||+|+|+.+.++..+..++. ..... .+.+.+..
T Consensus 245 ~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~ 324 (406)
T PRK15402 245 GEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIG 324 (406)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHH
Confidence 567888999988888888999999999999999999999888877776666 44432 22222211
Q ss_pred hcC-------CCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccch
Q psy3292 106 LVS-------PDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKW 149 (213)
Q Consensus 106 ~~~-------~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~ 149 (213)
... ...+........+.......+|..+|+.+.+.+.+..++..
T Consensus 325 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 375 (406)
T PRK15402 325 LANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGL 375 (406)
T ss_pred HHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Confidence 000 01111122223344445556677777777777777666544
No 165
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.32 E-value=2.4e-05 Score=66.26 Aligned_cols=116 Identities=21% Similarity=0.148 Sum_probs=86.2
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchh--HHHHHHHHHHHHHH-Hhhh--------cCchhHHHH-----
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRK--WTLLSTATLSAFSV-GQTF--------GWSSPVLAY----- 105 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr--~~~~~~~~~~~~~~-~~~~--------~~~~~~l~~----- 105 (213)
+++.+..+...+.-+..+.+.+|+++.|++.||+|.| ++++.+.++..+.. .-.+ .++.+.+.+
T Consensus 311 ~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~ 390 (477)
T PF11700_consen 311 VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLI 390 (477)
T ss_pred hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999 88888887774444 3332 333344433
Q ss_pred -------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc-cchhhhhhccc
Q psy3292 106 -------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-RKWTLLSTGML 157 (213)
Q Consensus 106 -------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g-~~~~~~~~~~~ 157 (213)
+.....|.....+-.+.+....-....+||++.|.+.+..| -|+.+....+.
T Consensus 391 G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~l 456 (477)
T PF11700_consen 391 GLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVL 456 (477)
T ss_pred HHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 33445555544555577777778889999999999999987 56665444333
No 166
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.24 E-value=7.2e-06 Score=51.60 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=51.5
Q ss_pred cccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHH
Q psy3292 26 FGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLS 88 (213)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~ 88 (213)
.+...|..|.+.+ +.+.++.+.+.+.++..+...++++++|.++||++|++..+.....+
T Consensus 16 ~g~~~Pfl~~~~~---~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 16 LGCLYPFLPLYLK---QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHhhhhHhhh---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 4445567777777 78999999999999999999999999999999999988877766553
No 167
>TIGR00898 2A0119 cation transport protein.
Probab=98.22 E-value=1.3e-05 Score=68.16 Aligned_cols=100 Identities=15% Similarity=0.104 Sum_probs=66.9
Q ss_pred HHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCch--hHHHH------------------hcCCCCC
Q psy3292 54 VASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSS--PVLAY------------------LVSPDSP 112 (213)
Q Consensus 54 ~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~--~~l~~------------------~~~~~~~ 112 (213)
.....+...++.++.+++.||+|||+.+.++.++..++. ...+.++. ..... ...+..|
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 440 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP 440 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 334556677889999999999999999999888887777 66655433 21111 2334444
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhc
Q psy3292 113 VPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTG 155 (213)
Q Consensus 113 ~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~ 155 (213)
...+....+.......+|..++|++.+ + +..++...+.+.+
T Consensus 441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~ 481 (505)
T TIGR00898 441 TVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFG 481 (505)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHH
Confidence 444555567777778889999998888 3 3445444444433
No 168
>KOG2504|consensus
Probab=98.22 E-value=9.6e-06 Score=69.17 Aligned_cols=129 Identities=15% Similarity=0.167 Sum_probs=100.4
Q ss_pred cccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhc--hhHHHHHHHHHHHHHH-HhhhcCchhH
Q psy3292 26 FGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG--RKWTLLSTATLSAFSV-GQTFGWSSPV 102 (213)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~G--rr~~~~~~~~~~~~~~-~~~~~~~~~~ 102 (213)
+......+|.+.+ +.+.++.+.+.+.+...+...+|.++.|.++|+.. ++....++.+...++. ...+.++++.
T Consensus 314 ~~~p~~~l~~~~~---~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~ 390 (509)
T KOG2504|consen 314 FNVPFVYLPSYAK---SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVG 390 (509)
T ss_pred HHHHHHHHHHHHh---hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 3444556688888 88999999999999999999999999999999988 4555666666677777 8888999877
Q ss_pred HHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc-cchhhhhhccc
Q psy3292 103 LAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-RKWTLLSTGML 157 (213)
Q Consensus 103 l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g-~~~~~~~~~~~ 157 (213)
+.. ...+..+...-..+.+.......++..+|++++|++.|..| +...+..++..
T Consensus 391 l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~ 464 (509)
T KOG2504|consen 391 LIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLC 464 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChH
Confidence 655 11122222333445677888889999999999999999988 78888887776
No 169
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.20 E-value=4.1e-05 Score=63.44 Aligned_cols=112 Identities=12% Similarity=0.055 Sum_probs=77.1
Q ss_pred hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh-hchhHHHHHHHHHHHHHH-HhhhcCchhHHHH----
Q psy3292 32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR-IGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY---- 105 (213)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~---- 105 (213)
..|.+.+ +.+.++.+.+++.+...++...+..+.+.+.|| ++.++.+..+..+..++. ...+.++.+....
T Consensus 230 ~~p~~~~---~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 306 (400)
T PRK11646 230 MLPIMVN---DIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICL 306 (400)
T ss_pred hhhhhHH---hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4577666 444577888888888887777777777777765 665666677777777777 6666666544322
Q ss_pred --------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc
Q psy3292 106 --------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG 146 (213)
Q Consensus 106 --------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g 146 (213)
...+..|........+.......+|..+|+.++|++.|+.+
T Consensus 307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 12223344455555677777788999999999999998854
No 170
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.19 E-value=4.7e-05 Score=63.16 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=93.1
Q ss_pred cccchhhhhhhhCCCCCCC-CChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc-CchhH
Q psy3292 26 FGWSSPVLAYLVSPDSPVP-MSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG-WSSPV 102 (213)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~-~~~~~ 102 (213)
.+......+.+.+ +.+ .+.+..+.+.+...++=...-+..+++.+|+|.|+++.++.+...+-+ ..+.. ++.+.
T Consensus 223 ~~~~~~f~~~yl~---~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~ 299 (400)
T PF03825_consen 223 HAAYYTFFSIYLQ---ELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPF 299 (400)
T ss_pred HHHHHHHHHHHHH---HcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 3333444455555 555 566667777777777777888899999999999999999999999999 88777 44333
Q ss_pred HHH----------------------hcCCCCCCCCCcchhhHHHHH-HHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 103 LAY----------------------LVSPDSPVPMSEDESSWVVAS-MEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 103 l~~----------------------~~~~~~~~~~~~~~~~~~~~~-~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
..+ ...+..|...+....+.+..+ .++|..+|.+++|++.|++|-+..+....+.
T Consensus 300 ~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~ 377 (400)
T PF03825_consen 300 IVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVF 377 (400)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 211 234455666666666776654 6899999999999999999988766554444
No 171
>KOG4686|consensus
Probab=98.15 E-value=1.3e-05 Score=62.68 Aligned_cols=109 Identities=15% Similarity=0.213 Sum_probs=82.8
Q ss_pred hhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH--HhhhcC--chhHHHH-----
Q psy3292 35 YLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV--GQTFGW--SSPVLAY----- 105 (213)
Q Consensus 35 ~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~--~~~~~~--~~~~l~~----- 105 (213)
.+++ .+++|+.+.+.+.+....-.++.+++.|.++||+||+.....+.++..+.. ...|+. .+..+..
T Consensus 290 fF~~---rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLsy 366 (459)
T KOG4686|consen 290 FFQK---RFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFLGLSY 366 (459)
T ss_pred HHHH---hhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHHhhhH
Confidence 5566 889999999999999999999999999999999999988877777766655 444442 2222222
Q ss_pred ---------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc
Q psy3292 106 ---------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG 146 (213)
Q Consensus 106 ---------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g 146 (213)
......|++.-.+..+.+.++.++|.++-++++|.++|.-|
T Consensus 367 sllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 367 SLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred HHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 22223444455556688999999999999999999999866
No 172
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.14 E-value=3.8e-05 Score=64.85 Aligned_cols=114 Identities=11% Similarity=0.024 Sum_probs=78.4
Q ss_pred hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhh--cC--chhHHHH
Q psy3292 31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTF--GW--SSPVLAY 105 (213)
Q Consensus 31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~--~~--~~~~l~~ 105 (213)
...|.+.+ ..++.++.+.++......++..++.++.|++.||+|||+.+..+..+..++. ...+ .+ +.+....
T Consensus 276 ~~~p~~~~--~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (485)
T TIGR00711 276 YLLPLYLQ--QVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIAL 353 (485)
T ss_pred HHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Confidence 34565543 1467899999999999999999999999999999999999988888877777 5542 22 2222111
Q ss_pred ------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc
Q psy3292 106 ------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG 146 (213)
Q Consensus 106 ------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g 146 (213)
......|........+.......+|..+|+.+.+.+.++..
T Consensus 354 ~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~~ 412 (485)
T TIGR00711 354 PQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNRT 412 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122233333334455666677888889888888887533
No 173
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.13 E-value=2e-05 Score=65.12 Aligned_cols=150 Identities=19% Similarity=0.162 Sum_probs=99.6
Q ss_pred hhHHHHHHHHHHHH-HHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHH
Q psy3292 4 GTTRQILAGMSATL-SAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLL 82 (213)
Q Consensus 4 ~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~ 82 (213)
+.++.|...+.... ..+-+.+|++..... ..+-+ +.+.++...|.+.+...+.=.+.-.+.+++.+|+|.|+.++
T Consensus 218 k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~-~~~f~---~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Ll 293 (412)
T PF01306_consen 218 KMRNFWFFVLFVIGVAAIYDVFDQQFPIYF-ASFFQ---SAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLL 293 (412)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhc---ccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHH
Confidence 34455554443333 345566776633222 22222 33456677899999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhH-HHHHHHHHHHHHHHHHHHHH
Q psy3292 83 STATLSAFSV-GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSW-VVASMEFGCWAIPFFAGMLC 142 (213)
Q Consensus 83 ~~~~~~~~~~-~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~-~~~~~~lg~~~g~~~~g~l~ 142 (213)
++.+++.+-. .++++++.+.+.. ......|..+..+.... .....++|..+.+.++|.+-
T Consensus 294 lag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly 373 (412)
T PF01306_consen 294 LAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLY 373 (412)
T ss_dssp HHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH
Confidence 9999999999 9999999887655 11222222222221111 12235778888999999999
Q ss_pred hHhccchhhhhhccc
Q psy3292 143 DRIGRKWTLLSTGML 157 (213)
Q Consensus 143 ~~~g~~~~~~~~~~~ 157 (213)
|++|.+.++++.+.+
T Consensus 374 d~~G~~~tylimg~i 388 (412)
T PF01306_consen 374 DRIGFQHTYLIMGLI 388 (412)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHHH
Confidence 999999888776655
No 174
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.12 E-value=7.1e-05 Score=62.31 Aligned_cols=112 Identities=12% Similarity=0.044 Sum_probs=73.2
Q ss_pred hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH----
Q psy3292 31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY---- 105 (213)
Q Consensus 31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~---- 105 (213)
..++.+.+ +...+.++...+...+.+..+..+|.++.+++.||+++|+.+.++.....+.. ...+.++...+..
T Consensus 253 s~l~~y~~-~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~ 331 (410)
T TIGR00885 253 TFIIQYAV-RLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVGLYCLTLC 331 (410)
T ss_pred HHHHHHHh-hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34455544 11224455555666777778889999999999999999999988888888887 7666655433322
Q ss_pred -------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHh
Q psy3292 106 -------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI 145 (213)
Q Consensus 106 -------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~ 145 (213)
......+.+.......... ..+|.+++|++.|++.|+.
T Consensus 332 glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~--~~~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 332 SAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM--AIIGGGIVPPLQGFIIDMK 382 (410)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH--HHhccchHHHHHHHHHHHh
Confidence 1122222222222223333 3389999999999999976
No 175
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.09 E-value=7e-05 Score=61.94 Aligned_cols=128 Identities=13% Similarity=0.041 Sum_probs=79.7
Q ss_pred cccchhhhhhhhCCCCC-CCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHH--HH--Hhhh----
Q psy3292 26 FGWSSPVLAYLVSPDSP-VPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAF--SV--GQTF---- 96 (213)
Q Consensus 26 ~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~--~~--~~~~---- 96 (213)
.+...|..|.+.+ + .|+++++.|.+.++..+..++.+++.|.++||+|.||-++.......+ +. ...+
T Consensus 23 ~gi~~pF~~iWL~---~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll 99 (412)
T PF01306_consen 23 WGIFLPFFPIWLT---QVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLL 99 (412)
T ss_dssp HHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHc---cccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666654 4 689999999999999999999999999999999976655444333221 22 2122
Q ss_pred cCchhHHHHhcCC----CCCC-------C------CCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 97 GWSSPVLAYLVSP----DSPV-------P------MSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 97 ~~~~~~l~~~~~~----~~~~-------~------~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
..|...-.+.... ..+. + ...-+.|..+...++|.+++..++|.+.+. +.+..+++.+..
T Consensus 100 ~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~fwi~s~~ 176 (412)
T PF01306_consen 100 QSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFNI-NPNIIFWIASAA 176 (412)
T ss_dssp HTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeeee-CccHHHHHHHHH
Confidence 2333222211111 1110 0 012234888899999999999999999874 556777766554
No 176
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.08 E-value=0.00026 Score=59.19 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=42.9
Q ss_pred hhhhhh-CCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHH
Q psy3292 32 VLAYLV-SPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLS 88 (213)
Q Consensus 32 ~~~~~~-~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~ 88 (213)
..|.+. + +.+.+..+.+...+...++..+++++.|+++||+|||+.+.+...+.
T Consensus 265 ~lp~~l~~---~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~ 319 (432)
T PRK10406 265 YMQKYLVN---TAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLA 319 (432)
T ss_pred HHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 345543 4 46788888888888888888899999999999999999877765543
No 177
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.07 E-value=9.4e-05 Score=69.10 Aligned_cols=102 Identities=13% Similarity=0.001 Sum_probs=72.2
Q ss_pred CCCCChh-hHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH--------------
Q psy3292 42 PVPMSED-ESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY-------------- 105 (213)
Q Consensus 42 ~~~~s~~-~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~-------------- 105 (213)
.++.+.. +.+++.+...++.++++++.|++.||+++++.+.++.+...++. ...+..+.+.+.+
T Consensus 262 ~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 341 (1146)
T PRK08633 262 VLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIV 341 (1146)
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Confidence 5678888 99999999999999999999999999999988888877777777 6666655544332
Q ss_pred ----hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3292 106 ----LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD 143 (213)
Q Consensus 106 ----~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~ 143 (213)
......|...+....+....+..+|..+++.+++.+..
T Consensus 342 ~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 342 PLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred HHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222333344444455666666777767666665543
No 178
>PRK09848 glucuronide transporter; Provisional
Probab=98.06 E-value=0.00014 Score=61.18 Aligned_cols=107 Identities=17% Similarity=0.003 Sum_probs=68.6
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcC--chhHHHH-------------
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGW--SSPVLAY------------- 105 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~--~~~~l~~------------- 105 (213)
.++.++...++......++..++.++.+++.||+|+|+.+.++..+..++. ...+.+ +.+.+..
T Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~ 337 (448)
T PRK09848 258 VLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTM 337 (448)
T ss_pred ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 345555555554555567788899999999999999999999988888777 655543 3332221
Q ss_pred -----hcCCCCCCC--C-----CcchhhHHHHHHHHHHHHHHHHHHHHHhHhccc
Q psy3292 106 -----LVSPDSPVP--M-----SEDESSWVVASMEFGCWAIPFFAGMLCDRIGRK 148 (213)
Q Consensus 106 -----~~~~~~~~~--~-----~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~ 148 (213)
+..+..|.. . .....+.......+|..+|+.+.+.+.+..|++
T Consensus 338 ~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~ 392 (448)
T PRK09848 338 TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYI 392 (448)
T ss_pred HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 111222211 1 111224445556788888888888888887764
No 179
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.06 E-value=0.00026 Score=59.36 Aligned_cols=121 Identities=15% Similarity=0.066 Sum_probs=81.0
Q ss_pred chhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcC--chhHHHH
Q psy3292 29 SSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGW--SSPVLAY 105 (213)
Q Consensus 29 ~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~--~~~~l~~ 105 (213)
.+.....|.+ +..+.++.+..+.......+.+++.++..++++|+|+|+++.++.++..++. ...+.+ +.....+
T Consensus 255 ~~s~~~yy~~--y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~ 332 (467)
T COG2211 255 RGSIMVYYVT--YVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVV 332 (467)
T ss_pred HhhhhheeEE--EEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHH
Confidence 3344444442 3456677778888888888889999999999999999999999999999999 766665 3333333
Q ss_pred ------------------hcCCCC--CCCCCcc-hhhH----HHHHHHHHHHHHHHHHHHHHhHhccchhh
Q psy3292 106 ------------------LVSPDS--PVPMSED-ESSW----VVASMEFGCWAIPFFAGMLCDRIGRKWTL 151 (213)
Q Consensus 106 ------------------~~~~~~--~~~~~~~-~~~~----~~~~~~lg~~~g~~~~g~l~~~~g~~~~~ 151 (213)
+..+.. +++.+.. ..|. .....-+|.+++..+.|++.+..|.....
T Consensus 333 ~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv~~~ 403 (467)
T COG2211 333 ALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYVPNV 403 (467)
T ss_pred HHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 111111 1111211 2233 33344568889999999999988875443
No 180
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.01 E-value=8.1e-05 Score=63.46 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=74.6
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhh---cCchhHHHH------------
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTF---GWSSPVLAY------------ 105 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~---~~~~~~l~~------------ 105 (213)
.++.++.+.+.......++..++.++.|++.||+|||+.+..+..+..++. .... .++.+....
T Consensus 289 v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~ 368 (495)
T PRK14995 289 VHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASA 368 (495)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHH
Confidence 468899999999999999999999999999999999999888887776666 4432 123322221
Q ss_pred ------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy3292 106 ------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR 144 (213)
Q Consensus 106 ------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~ 144 (213)
......|........+......++|..+|+.+.|.+.+.
T Consensus 369 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 369 LLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111223333444445666677789999999999888764
No 181
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=97.97 E-value=0.00021 Score=58.26 Aligned_cols=54 Identities=19% Similarity=0.014 Sum_probs=46.6
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT 95 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~ 95 (213)
+++.++.+.+++.+...++..++.++.|++.||+|||+.+..+..+..++. ...
T Consensus 236 ~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (385)
T TIGR00710 236 IMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLE 290 (385)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999888777766665 443
No 182
>PRK10429 melibiose:sodium symporter; Provisional
Probab=97.95 E-value=0.00024 Score=60.22 Aligned_cols=103 Identities=12% Similarity=0.066 Sum_probs=67.6
Q ss_pred ChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhh-----cCchhHHHH--------------
Q psy3292 46 SEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTF-----GWSSPVLAY-------------- 105 (213)
Q Consensus 46 s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~-----~~~~~~l~~-------------- 105 (213)
+++..+.+.+...++..++.++.++++||+|+|+.+..+..+..++. .... ..+.+.+.+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777778899999999999999999999988877666555 3321 222232222
Q ss_pred ----hcCCCCCC--CCCcc-----hhhHHHHHHHHHHHHHHHHHHHHHhHhccc
Q psy3292 106 ----LVSPDSPV--PMSED-----ESSWVVASMEFGCWAIPFFAGMLCDRIGRK 148 (213)
Q Consensus 106 ----~~~~~~~~--~~~~~-----~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~ 148 (213)
+..+..+. +.++. ..+.......+|..+++.+.|++.+..|.+
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy~ 397 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGYV 397 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 12222221 11222 224444456678899999999999988874
No 183
>KOG2325|consensus
Probab=97.92 E-value=4.1e-05 Score=64.32 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhch-hHHHHHHH
Q psy3292 7 RQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGR-KWTLLSTA 85 (213)
Q Consensus 7 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Gr-r~~~~~~~ 85 (213)
..|....++.+..+..+.+.++..+..-.|.+ +-|.+.+++..|++.++..+|.+++++..|.++.|.|+ |+.++.+.
T Consensus 31 t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~-~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ 109 (488)
T KOG2325|consen 31 TNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQ-KLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF 109 (488)
T ss_pred CchHhHHHHHHHHHHHhhhheEEEeecchhhh-hcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH
Confidence 44555666667788888888888877755555 33467888999999999999999999999999999997 88888899
Q ss_pred HHHHHHH-Hh
Q psy3292 86 TLSAFSV-GQ 94 (213)
Q Consensus 86 ~~~~~~~-~~ 94 (213)
++..+++ +.
T Consensus 110 ii~~~g~llY 119 (488)
T KOG2325|consen 110 LIAIIGNLLY 119 (488)
T ss_pred HHHHHHHHHH
Confidence 9999988 65
No 184
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=97.85 E-value=0.00018 Score=61.05 Aligned_cols=105 Identities=12% Similarity=0.015 Sum_probs=83.9
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc----------CchhHHHH-----
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG----------WSSPVLAY----- 105 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~----------~~~~~l~~----- 105 (213)
+.+.++.+.|...+...++..++....+.+.+|++.|+++.++.++..++. ..... ++.+....
T Consensus 282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~ 361 (468)
T TIGR00788 282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIA 361 (468)
T ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHH
Confidence 689999999999999999999999999999999999999999998888766 43211 11111000
Q ss_pred -------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc
Q psy3292 106 -------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG 146 (213)
Q Consensus 106 -------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g 146 (213)
......|........+...++.++|..+++.+++.+.+.+|
T Consensus 362 ~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 362 EVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33445666667777889999999999999999999999988
No 185
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=97.83 E-value=0.00062 Score=56.32 Aligned_cols=114 Identities=10% Similarity=-0.020 Sum_probs=73.0
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH---------------
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY--------------- 105 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~--------------- 105 (213)
.++.++.+.+.+.+...+|..+|++..+++.||.++|+.+..+..+ .+.. ...+.++.+....
T Consensus 235 ~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~ 313 (393)
T PRK11195 235 ALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLMALQHSLLPAYPLLILIGALGGFFVVP 313 (393)
T ss_pred HcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhh
Confidence 5688999999999999999999999999999999998877776533 3333 4444444432211
Q ss_pred ---hcCCCCCCCC-CcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 ---LVSPDSPVPM-SEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 ---~~~~~~~~~~-~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
...+..|... .....+......+++..++..+.+. .+.+|-+..+.+....
T Consensus 314 ~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 368 (393)
T PRK11195 314 MNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSL-LVKLGVPVVAVIVGFG 368 (393)
T ss_pred HHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHH
Confidence 0111111111 1222234455566777777777764 4677888777665444
No 186
>PRK09669 putative symporter YagG; Provisional
Probab=97.81 E-value=0.0012 Score=55.40 Aligned_cols=102 Identities=9% Similarity=-0.092 Sum_probs=64.6
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH--Hhhhc-CchhHHHH------------------
Q psy3292 47 EDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV--GQTFG-WSSPVLAY------------------ 105 (213)
Q Consensus 47 ~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~--~~~~~-~~~~~l~~------------------ 105 (213)
++..+.+.....+...++.++.++++||+|+|+.+..+.....+.. ..... .+.+.+.+
T Consensus 263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a 342 (444)
T PRK09669 263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS 342 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666678888999999999999999999988776655433 22222 23332222
Q ss_pred hcCCCCC--CCCC-cch----hhHHHHHHHHHHHHHHHHHHHHHhHhccc
Q psy3292 106 LVSPDSP--VPMS-EDE----SSWVVASMEFGCWAIPFFAGMLCDRIGRK 148 (213)
Q Consensus 106 ~~~~~~~--~~~~-~~~----~~~~~~~~~lg~~~g~~~~g~l~~~~g~~ 148 (213)
+..+..+ +..+ +.. .+.......+|..+|+.++|.+.+..|.+
T Consensus 343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 2222222 1111 112 24444556789999999999999998875
No 187
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=97.80 E-value=0.00021 Score=58.56 Aligned_cols=119 Identities=21% Similarity=0.182 Sum_probs=82.1
Q ss_pred hhh-hhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcC-------chhH
Q psy3292 32 VLA-YLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGW-------SSPV 102 (213)
Q Consensus 32 ~~~-~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~-------~~~~ 102 (213)
.+| .+++ +++.++.+.+...+.+.+-..+..+..|+++||+|.+++.+.....+.+.. ...... +...
T Consensus 240 ~l~~~~~~---~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~ 316 (417)
T COG2223 240 YLPMYLVT---QFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVV 316 (417)
T ss_pred HHHHHHHH---hcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHH
Confidence 344 4455 788999999999999999999999999999999999999999998888888 666553 2221
Q ss_pred HHH-------h-------cCCCCCCCCCcc---hhhHHHHHHHHHHHHHHHHHHHHHhHhc-cchhhhh
Q psy3292 103 LAY-------L-------VSPDSPVPMSED---ESSWVVASMEFGCWAIPFFAGMLCDRIG-RKWTLLS 153 (213)
Q Consensus 103 l~~-------~-------~~~~~~~~~~~~---~~~~~~~~~~lg~~~g~~~~g~l~~~~g-~~~~~~~ 153 (213)
... . .-...|.+.+++ ..+.+..+..+|+..-|...+...+..| +...+++
T Consensus 317 ~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~ 385 (417)
T COG2223 317 FVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFML 385 (417)
T ss_pred HHHHHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHH
Confidence 111 0 111223322222 2355666667777777888888888887 4444443
No 188
>PF13347 MFS_2: MFS/sugar transport protein
Probab=97.79 E-value=0.00036 Score=58.35 Aligned_cols=121 Identities=15% Similarity=0.071 Sum_probs=80.1
Q ss_pred ccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcC--chhHH
Q psy3292 27 GWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGW--SSPVL 103 (213)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~--~~~~l 103 (213)
.......+.+.+ +.-.++...+.......++..++.+++++++||+|+|+++..+..+..++. ...+.+ |.+.+
T Consensus 242 ~~~~~~~~y~~~---~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (428)
T PF13347_consen 242 ALMNTFLPYYFT---YVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLV 318 (428)
T ss_pred hhhhhHHHHHHH---HHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHH
Confidence 333444455544 222233677888889999999999999999999999999999999999988 766665 65555
Q ss_pred HH------------------hcCCCCCCC---CCcchhhHHHH----HHHHHHHHHHHHHHHHHhHhccchh
Q psy3292 104 AY------------------LVSPDSPVP---MSEDESSWVVA----SMEFGCWAIPFFAGMLCDRIGRKWT 150 (213)
Q Consensus 104 ~~------------------~~~~~~~~~---~~~~~~~~~~~----~~~lg~~~g~~~~g~l~~~~g~~~~ 150 (213)
.+ +..+..+.. ..+...+.+.+ ...++..+++.+.+.+.+..|.+..
T Consensus 319 ~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~~ 390 (428)
T PF13347_consen 319 LILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDAN 390 (428)
T ss_pred HHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCCC
Confidence 44 111111111 11122344444 4566888888888888888776543
No 189
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.77 E-value=0.0003 Score=65.90 Aligned_cols=120 Identities=13% Similarity=-0.000 Sum_probs=79.8
Q ss_pred hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc-------------
Q psy3292 32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG------------- 97 (213)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~------------- 97 (213)
..|.+.+ ..++.++.+.+++.+.+.+|.++|+++.|.+.|+.++++.+..+.++..+.. ...+.
T Consensus 247 ~~p~~~~--~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 324 (1140)
T PRK06814 247 QLPLLAK--ETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKS 324 (1140)
T ss_pred HhHHHHH--HHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccc
Confidence 3455543 1468899999999999999999999999999998887766555554444433 33332
Q ss_pred -------CchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH-hccchhh
Q psy3292 98 -------WSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR-IGRKWTL 151 (213)
Q Consensus 98 -------~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~-~g~~~~~ 151 (213)
.+.+.+.+ ......|........+.......+|..+|+++.+.+.+. .+....+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~ 404 (1140)
T PRK06814 325 ILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWII 404 (1140)
T ss_pred hhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 33332222 223444555556666777778888899999998888753 3444444
Q ss_pred hh
Q psy3292 152 LS 153 (213)
Q Consensus 152 ~~ 153 (213)
++
T Consensus 405 ~~ 406 (1140)
T PRK06814 405 LF 406 (1140)
T ss_pred HH
Confidence 43
No 190
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.77 E-value=0.0002 Score=58.15 Aligned_cols=64 Identities=14% Similarity=0.235 Sum_probs=50.0
Q ss_pred hhhhhhhhCCCCCCCCChhhHHHHHHHHH-HHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhh
Q psy3292 30 SPVLAYLVSPDSPVPMSEDESSWVVASME-FGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTF 96 (213)
Q Consensus 30 ~~~~~~~~~~~~~~~~s~~~~~~~~s~~~-~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~ 96 (213)
....|.+.+ +.+.++++.+.+.+... ++..++.++.|++.||+|||+.+..+.++..+.. ...+
T Consensus 229 ~~~~~~~l~---~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~ 294 (356)
T TIGR00901 229 TVLTTLFLL---DMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVW 294 (356)
T ss_pred HHHHHHHHH---HcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666 57889999998887665 6788999999999999999999888887776665 4443
No 191
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.75 E-value=0.00034 Score=57.54 Aligned_cols=133 Identities=12% Similarity=0.033 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHH
Q psy3292 11 AGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAF 90 (213)
Q Consensus 11 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~ 90 (213)
..++.+-..+.+|.+.-.. ...-.-.+ +++.+..+.........+.+..|+++.|++.||+|.|++++.+.++..+
T Consensus 255 ~~FLiA~~~~~DGv~til~-~~~~fg~~---~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~ 330 (438)
T COG2270 255 VLFLIARFFYIDGVNTILA-MGGVFGAA---DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSI 330 (438)
T ss_pred HHHHHHHHHHHhhHHHHHH-HHHHHHHH---HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHH
Confidence 3444445556666554222 11222333 7899999999999999999999999999999999999999999999877
Q ss_pred HH-HhhhcCch---hHHHH---------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhcc
Q psy3292 91 SV-GQTFGWSS---PVLAY---------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGR 147 (213)
Q Consensus 91 ~~-~~~~~~~~---~~l~~---------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~ 147 (213)
.. ...+.... +.+-. ......|.....+..+.+.........+||++.+.+.+..|.
T Consensus 331 ~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~ 406 (438)
T COG2270 331 AALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS 406 (438)
T ss_pred HHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 77 44443322 22211 122334444444455777777888899999999999988775
No 192
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=97.75 E-value=0.0004 Score=56.07 Aligned_cols=136 Identities=14% Similarity=0.137 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhc-hhHHHHH
Q psy3292 5 TTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-RKWTLLS 83 (213)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~G-rr~~~~~ 83 (213)
++..|.+++...+-++.+....+| +|.+.. |.+.|+.+.|++.+...+.....++....+++|.. +|+....
T Consensus 207 ~~~aW~vtLfmGlqS~~~Y~~~~W----LP~ili---~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~ 279 (395)
T COG2807 207 SPLAWQVTLFMGLQSLLYYIVIGW----LPAILI---DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVL 279 (395)
T ss_pred CchhHHHHHHHHhhHHHHHHHHHH----HHHHHH---HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 455677777776666665444444 466666 78999999999999999999999999999999755 5777777
Q ss_pred HHHHHHHHH-HhhhcCchhH-HH-H----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy3292 84 TATLSAFSV-GQTFGWSSPV-LA-Y----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR 144 (213)
Q Consensus 84 ~~~~~~~~~-~~~~~~~~~~-l~-~----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~ 144 (213)
...++.++. ...+.+.... +. . ......+......-.++.++...+=..+||.+.|++-|.
T Consensus 280 ~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa 359 (395)
T COG2807 280 ALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDA 359 (395)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHh
Confidence 777788888 6666554322 11 1 111111222222223555565556667799999999999
Q ss_pred hcc
Q psy3292 145 IGR 147 (213)
Q Consensus 145 ~g~ 147 (213)
.|.
T Consensus 360 ~gs 362 (395)
T COG2807 360 TGS 362 (395)
T ss_pred cCC
Confidence 863
No 193
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.63 E-value=0.0012 Score=53.81 Aligned_cols=49 Identities=10% Similarity=-0.002 Sum_probs=43.3
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHH
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAF 90 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~ 90 (213)
.++.++.+.+...+...++..++.++.|++.||+|||+.+..+..+..+
T Consensus 224 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~ 272 (377)
T PRK11102 224 LNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFI 272 (377)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999998887765433
No 194
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.60 E-value=0.001 Score=54.51 Aligned_cols=126 Identities=17% Similarity=0.158 Sum_probs=92.0
Q ss_pred cchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-
Q psy3292 28 WSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY- 105 (213)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~- 105 (213)
..+..++.+.+ + ..+.++.+.+...+.+..+.++|.+....+.+|+...|.+.+.+++..+.+ ..++..+...+..
T Consensus 254 a~gsfl~~y~~-~-~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~~l 331 (422)
T COG0738 254 AIGSFLVSYLE-E-LLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALYAL 331 (422)
T ss_pred HHHHHHHHHHH-h-cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 33455566655 1 278899999999999999999999999999999999999888888877777 7777777665544
Q ss_pred ----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 ----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 ----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
......| ..++ ..+....+..+|+++-|.+.|++.|+.|-...+....++
T Consensus 332 ~~ig~F~simfPTIfslal~~l~-~~ts-~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pll 397 (422)
T COG0738 332 FLIGLFNSIMFPTIFSLALKNLG-EHTS-VGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLL 397 (422)
T ss_pred HHHHHHhHHHHHHHHHHHHhccC-cccc-ccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 2223333 2222 223344455679999999999999999987776643434
No 195
>PRK11462 putative transporter; Provisional
Probab=97.59 E-value=0.0031 Score=53.37 Aligned_cols=103 Identities=12% Similarity=-0.060 Sum_probs=61.0
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCch-h-HHHH------------------
Q psy3292 47 EDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSS-P-VLAY------------------ 105 (213)
Q Consensus 47 ~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~-~-~l~~------------------ 105 (213)
+...+.+...+.++..++.++.++++||+|+|+.+..+.....+.. ...+.++. . .+.+
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~ 341 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV 341 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677788888999999999999999999988765544433333 22222111 1 1111
Q ss_pred hcCCCCC--CCCC-cchh----hHHHHHHHHHHHHHHHHHHHHHhHhccch
Q psy3292 106 LVSPDSP--VPMS-EDES----SWVVASMEFGCWAIPFFAGMLCDRIGRKW 149 (213)
Q Consensus 106 ~~~~~~~--~~~~-~~~~----~~~~~~~~lg~~~g~~~~g~l~~~~g~~~ 149 (213)
+..+..+ .+.+ +... +.......+|..+|+.+.|.+.+..|.+.
T Consensus 342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy~~ 392 (460)
T PRK11462 342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYDA 392 (460)
T ss_pred HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 1111111 1111 1122 33334567799999999999988877753
No 196
>KOG2816|consensus
Probab=97.57 E-value=0.0021 Score=54.35 Aligned_cols=119 Identities=15% Similarity=0.025 Sum_probs=76.9
Q ss_pred HHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-------------hcCCCCCCC---CCcch
Q psy3292 57 MEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY-------------LVSPDSPVP---MSEDE 119 (213)
Q Consensus 57 ~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~-------------~~~~~~~~~---~~~~~ 119 (213)
..+...+.+...|-++|++|||..+....+...+.. ...+.. ++.+.. ......+.. .+...
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~~~~l~g~~~~~~s~~~a~vadis~~~~R~~~ 149 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFLLLGLSGGFSAIFSVGFAYVADISSEEERSSS 149 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhhhcccccchhhhhhhhhhheeeccchhHHHHH
Confidence 356778899999999999999999999999988888 655555 222212 111111211 12223
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHH
Q psy3292 120 SSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWT 182 (213)
Q Consensus 120 ~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~ 182 (213)
.+.....+..+..+++.+++.+.+..|.-..+.+.....+ ....+..+++||+..--
T Consensus 150 ~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~------~~~~y~~~~l~Esl~~~ 206 (463)
T KOG2816|consen 150 IGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGI------LSLLYMLLFLPESLQEK 206 (463)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHH------HHHHHHhhccccccCcc
Confidence 3666666778889999999999988777666666655521 22233445557765433
No 197
>KOG0253|consensus
Probab=97.56 E-value=0.0015 Score=53.28 Aligned_cols=82 Identities=15% Similarity=0.142 Sum_probs=61.5
Q ss_pred HHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc--CchhHHHH----------------hcCCCCCCCCCc
Q psy3292 57 MEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG--WSSPVLAY----------------LVSPDSPVPMSE 117 (213)
Q Consensus 57 ~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~--~~~~~l~~----------------~~~~~~~~~~~~ 117 (213)
..+.-.-|.++.+.+.||+|||+++-.+.+++.+.. ....+ +|...... ...+..|...+.
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa 469 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA 469 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence 345567899999999999999999999999988888 55544 33332222 334555666666
Q ss_pred chhhHHHHHHHHHHHHHHHHH
Q psy3292 118 DESSWVVASMEFGCWAIPFFA 138 (213)
Q Consensus 118 ~~~~~~~~~~~lg~~~g~~~~ 138 (213)
...|...++.-+|+.+.|+++
T Consensus 470 tgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 470 TGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred cchhhhhhHHhhhhhhhhHHH
Confidence 667888888999999999887
No 198
>KOG3762|consensus
Probab=97.54 E-value=3.2e-05 Score=65.12 Aligned_cols=139 Identities=15% Similarity=0.113 Sum_probs=108.6
Q ss_pred HHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc
Q psy3292 19 AFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG 97 (213)
Q Consensus 19 ~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~ 97 (213)
.+..|.-.+.....+-...| |.+..+...|.....-..|=+..-++.+++.+|+|+-+++.++..++.+-. ..+..
T Consensus 380 av~mG~g~~lv~tFLfWHle---d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L 456 (618)
T KOG3762|consen 380 AVVMGAGVGLVFTFLFWHLE---DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL 456 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHh---hcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh
Confidence 33333333333333444455 677778888877777777778888899999999999999999999999999 88888
Q ss_pred CchhHHHH------------------hcCCCCCCCCCcchhhHHHHH-HHHHHHHHHHHHHHHHhHhccchhhhhhcccc
Q psy3292 98 WSSPVLAY------------------LVSPDSPVPMSEDESSWVVAS-MEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLC 158 (213)
Q Consensus 98 ~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~-~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~ 158 (213)
+|.|+.+. ..+...|...+....+.+... ..+|-.+|++++|.+.+++|-|..|.+.++.|
T Consensus 457 ~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAc 536 (618)
T KOG3762|consen 457 QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIAC 536 (618)
T ss_pred cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHH
Confidence 88887544 456677888888877777765 68899999999999999999999999888886
Q ss_pred hh
Q psy3292 159 DR 160 (213)
Q Consensus 159 ~~ 160 (213)
+.
T Consensus 537 l~ 538 (618)
T KOG3762|consen 537 LV 538 (618)
T ss_pred HH
Confidence 53
No 199
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.52 E-value=0.00046 Score=58.26 Aligned_cols=46 Identities=22% Similarity=0.298 Sum_probs=37.8
Q ss_pred hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchh
Q psy3292 31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRK 78 (213)
Q Consensus 31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr 78 (213)
...|.+.+ +.++.+..+.++..++..++..++.++.|+++||+++|
T Consensus 282 ~~lp~~l~--~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~ 327 (465)
T TIGR00894 282 TYLPTFIS--WVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSS 327 (465)
T ss_pred HHHHHHHH--HHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34565543 15688999999999999999999999999999998765
No 200
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=97.52 E-value=0.00036 Score=56.02 Aligned_cols=65 Identities=22% Similarity=0.240 Sum_probs=50.4
Q ss_pred chhhhhhh-hCCCCCCCCC-hhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhh
Q psy3292 29 SSPVLAYL-VSPDSPVPMS-EDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTF 96 (213)
Q Consensus 29 ~~~~~~~~-~~~~~~~~~s-~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~ 96 (213)
.....|.+ .+ +++.+ +.+.+...+...++..++.++.|++.||+|+|+..........+.. ....
T Consensus 225 ~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (352)
T PF07690_consen 225 FSFFLPLYLQE---VLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLL 292 (352)
T ss_dssp HHHHHHHHCCH---HHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred hhcccchhhhh---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 44555665 55 56677 7899999999999999999999999999998877777776666655 4433
No 201
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.47 E-value=0.0015 Score=55.24 Aligned_cols=39 Identities=15% Similarity=0.014 Sum_probs=31.1
Q ss_pred HHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH
Q psy3292 54 VASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV 92 (213)
Q Consensus 54 ~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~ 92 (213)
..+..+...+..++.|+++||+|+|+++.++.....+..
T Consensus 292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~ 330 (462)
T PRK15034 292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFS 330 (462)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHH
Confidence 334456778888999999999999999988887665554
No 202
>KOG3764|consensus
Probab=97.43 E-value=0.00013 Score=59.44 Aligned_cols=131 Identities=18% Similarity=0.133 Sum_probs=89.8
Q ss_pred cccchhhhhhh-hCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhc--hhHHHHHHHHHHHHHH-HhhhcCchh
Q psy3292 26 FGWSSPVLAYL-VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG--RKWTLLSTATLSAFSV-GQTFGWSSP 101 (213)
Q Consensus 26 ~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~G--rr~~~~~~~~~~~~~~-~~~~~~~~~ 101 (213)
.+..=|.++.+ .| .+..+..+.+...--..+...+|+.+.|.++||++ |-.....+.+...+.. ..-+++++.
T Consensus 286 lafLePtlslwm~e---~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~ 362 (464)
T KOG3764|consen 286 LAFLEPTLSLWMLE---TMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIA 362 (464)
T ss_pred HHHhCcccHHHHHH---hccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHH
Confidence 44444555553 33 44544557777777777888999999999999999 5444445555555555 667788877
Q ss_pred HHHH------------------hcCC------CCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 102 VLAY------------------LVSP------DSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 102 ~l~~------------------~~~~------~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
.+.+ .... ...........+.....+.+|.++||.++|.+.+++|.+|...+..+.
T Consensus 363 ~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~ 442 (464)
T KOG3764|consen 363 QLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGIL 442 (464)
T ss_pred HHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHH
Confidence 7666 0001 111112334456677778999999999999999999999998877777
Q ss_pred ch
Q psy3292 158 CD 159 (213)
Q Consensus 158 ~~ 159 (213)
++
T Consensus 443 n~ 444 (464)
T KOG3764|consen 443 NL 444 (464)
T ss_pred HH
Confidence 54
No 203
>PRK11043 putative transporter; Provisional
Probab=97.40 E-value=0.0075 Score=49.76 Aligned_cols=108 Identities=11% Similarity=0.021 Sum_probs=66.4
Q ss_pred hhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-H---hhh--cCchhHHHH-
Q psy3292 33 LAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-G---QTF--GWSSPVLAY- 105 (213)
Q Consensus 33 ~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~---~~~--~~~~~~l~~- 105 (213)
.|.+.+ +.+.++.+.++......++..+|.+..+++.||+|+|+..........+.. . ... .++......
T Consensus 226 ~p~~~~---~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (401)
T PRK11043 226 SPFILE---QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIP 302 (401)
T ss_pred hHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 466666 678899999998888888999999999999999999887654444333322 1 111 222221111
Q ss_pred -----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy3292 106 -----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR 144 (213)
Q Consensus 106 -----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~ 144 (213)
...+..| ..+....+...+....+...++.+.|.+.|.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 303 FCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 0111122 2334444666666566666777777777664
No 204
>PRK09669 putative symporter YagG; Provisional
Probab=97.28 E-value=0.0013 Score=55.31 Aligned_cols=63 Identities=14% Similarity=0.010 Sum_probs=48.8
Q ss_pred hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh----hchhHH-HHHHHHHHHHHH-Hhhhc
Q psy3292 32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR----IGRKWT-LLSTATLSAFSV-GQTFG 97 (213)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~----~Grr~~-~~~~~~~~~~~~-~~~~~ 97 (213)
..+.+.+ .+++++.+.+.+.++.-+...+..++.|.++|| +||||. ++.+.....+.. .....
T Consensus 32 l~~~~t~---~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~ 100 (444)
T PRK09669 32 LAYFYTD---VFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYT 100 (444)
T ss_pred HHHHHHH---hcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhC
Confidence 3456666 789999999999999999999999999999999 787555 445555555555 44333
No 205
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=97.27 E-value=0.0039 Score=48.17 Aligned_cols=75 Identities=24% Similarity=0.290 Sum_probs=55.9
Q ss_pred hhcccccchhhhhhhhCCCCCCCCCh--hhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcC
Q psy3292 22 VGQTFGWSSPVLAYLVSPDSPVPMSE--DESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGW 98 (213)
Q Consensus 22 ~g~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~ 98 (213)
.+++.+...+..+.+.+ +.+.+. ...++..+.+.++..+++++.|.++||+|||+.+..+......+. ...+..
T Consensus 14 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
T COG0477 14 LGLDLGLLSPALPLLLS---TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP 90 (338)
T ss_pred HHHhcchHHHHHHHHHH---HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc
Confidence 33556666666776666 444454 578999999999999999999999999999988887776555555 555554
Q ss_pred c
Q psy3292 99 S 99 (213)
Q Consensus 99 ~ 99 (213)
+
T Consensus 91 ~ 91 (338)
T COG0477 91 N 91 (338)
T ss_pred c
Confidence 4
No 206
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.22 E-value=0.0013 Score=53.35 Aligned_cols=54 Identities=15% Similarity=0.025 Sum_probs=45.2
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT 95 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~ 95 (213)
.++.++.+.+.+.+...+...++.++.|+++||+|||+.+..+......+. ...
T Consensus 255 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~ 309 (366)
T TIGR00886 255 QFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVV 309 (366)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHH
Confidence 568889999999999999999999999999999999888777766655555 443
No 207
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=97.20 E-value=0.011 Score=48.61 Aligned_cols=117 Identities=13% Similarity=0.032 Sum_probs=65.4
Q ss_pred hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchh---HHHHH-HHHHHHHHH-HhhhcCchhHHHH-
Q psy3292 32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRK---WTLLS-TATLSAFSV-GQTFGWSSPVLAY- 105 (213)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr---~~~~~-~~~~~~~~~-~~~~~~~~~~l~~- 105 (213)
-.|.+.+ +.+.+.. .+...++..+...++. +.++||..|| +.... ......+.. ...+..+......
T Consensus 214 wlp~~L~---~~g~s~~-~~~~~~l~~~~g~~g~---~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 286 (368)
T TIGR00903 214 WLEAALR---PAGLEDI-AGDAVALAILAGLIGV---AVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAF 286 (368)
T ss_pred HHHHHHH---HCCCChH-HHHHHHHHHHHHHHHH---HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence 3566666 4455543 5666666555555554 6677776543 33222 233333333 3333332222111
Q ss_pred -----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 -----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 -----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
...+..|...+....+...+...+|...++++.+.+.. |-+..+...+.+
T Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~ 353 (368)
T TIGR00903 287 IGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAIL 353 (368)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence 23455566667777788999899999888888887773 545555444433
No 208
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=97.20 E-value=0.007 Score=46.93 Aligned_cols=82 Identities=22% Similarity=0.227 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHH
Q psy3292 9 ILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLS 88 (213)
Q Consensus 9 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~ 88 (213)
|.............|..+.. +..-|++++ .++.|.+|...+..+..+|..+| ++.|.+.|++|.+.++.++.+..
T Consensus 2 W~~l~a~~~v~~~~Gt~Y~F-s~yS~~Lk~---~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~ 76 (250)
T PF06813_consen 2 WLSLVASIWVQLCSGTTYTF-SAYSPQLKS---RLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLG 76 (250)
T ss_pred hhhHHHHHHHHHhcCcccch-hhhhHHHHH---HhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHH
Confidence 33333333344444433322 344578888 88999999999999999999875 88999999999999999999999
Q ss_pred HHHH-Hhh
Q psy3292 89 AFSV-GQT 95 (213)
Q Consensus 89 ~~~~-~~~ 95 (213)
.++. ...
T Consensus 77 ~~GY~~~~ 84 (250)
T PF06813_consen 77 FVGYGLLW 84 (250)
T ss_pred HHHHHHHH
Confidence 8888 544
No 209
>PRK10429 melibiose:sodium symporter; Provisional
Probab=97.04 E-value=0.0072 Score=51.30 Aligned_cols=64 Identities=16% Similarity=0.054 Sum_probs=48.6
Q ss_pred cccchhhh-hhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhh----hhch-hHHHHHHHHHHHHHH
Q psy3292 26 FGWSSPVL-AYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD----RIGR-KWTLLSTATLSAFSV 92 (213)
Q Consensus 26 ~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d----~~Gr-r~~~~~~~~~~~~~~ 92 (213)
.+..++.+ ..+.+ ..++++...|.+..+.-+--++..++.|.++| |+|| |+.++.+.....++.
T Consensus 22 ~~~~~~~l~~yyt~---v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~ 91 (473)
T PRK10429 22 IGIVYMYLMYYYTD---VVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVL 91 (473)
T ss_pred HHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHH
Confidence 34444444 45555 67999999999999999999999999999999 5699 455555666666665
No 210
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=97.03 E-value=0.018 Score=50.88 Aligned_cols=128 Identities=13% Similarity=0.194 Sum_probs=83.8
Q ss_pred ccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh-hchhHHHHHHHHHHHHHH-HhhhcCch----
Q psy3292 27 GWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR-IGRKWTLLSTATLSAFSV-GQTFGWSS---- 100 (213)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~~~~-~~~~~~~~---- 100 (213)
++.....-.+.+ ..+.+++....+...+..-..+.++++|.++|+ +||++++.++.++..++. +.+++...
T Consensus 5 Gm~aiLvlYl~~---~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~ 81 (654)
T TIGR00926 5 GMRTILVLYFLN---FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGH 81 (654)
T ss_pred ecHHHHHHHHHH---HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence 334444455555 578888989889999999999999999999996 999999999999999998 76654210
Q ss_pred ----hHHHH------------------hcCCCCCCCC---CcchhhHHHHHHHHHHHHHHHHHHHHHhHh-------ccc
Q psy3292 101 ----PVLAY------------------LVSPDSPVPM---SEDESSWVVASMEFGCWAIPFFAGMLCDRI-------GRK 148 (213)
Q Consensus 101 ----~~l~~------------------~~~~~~~~~~---~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~-------g~~ 148 (213)
...+. ......+... .+....+.....++|..++..+.+++.+.+ ||.
T Consensus 82 ~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~ 161 (654)
T TIGR00926 82 PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYP 161 (654)
T ss_pred chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchH
Confidence 00111 0111111100 111124555567788888888888887554 466
Q ss_pred hhhhhhccc
Q psy3292 149 WTLLSTGML 157 (213)
Q Consensus 149 ~~~~~~~~~ 157 (213)
..+.+.++.
T Consensus 162 ~aF~i~~i~ 170 (654)
T TIGR00926 162 LAFGVPAIL 170 (654)
T ss_pred HHHHHHHHH
Confidence 666655554
No 211
>PF13347 MFS_2: MFS/sugar transport protein
Probab=97.02 E-value=0.00089 Score=55.97 Aligned_cols=63 Identities=19% Similarity=0.121 Sum_probs=49.9
Q ss_pred hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhh----hhchhHHHH-HHHHHHHHHH-Hhhhc
Q psy3292 32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD----RIGRKWTLL-STATLSAFSV-GQTFG 97 (213)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d----~~Grr~~~~-~~~~~~~~~~-~~~~~ 97 (213)
..+.+.+ ..++++...+.+..+.-+-.++-.++.|.++| |+|||+..+ ++.....++. .....
T Consensus 24 ~~~f~~~---~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~ 92 (428)
T PF13347_consen 24 LLYFYTD---VLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSP 92 (428)
T ss_pred HHHHHHH---HcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhcc
Confidence 3466666 67999999999999999999999999999999 899876655 5556666666 44444
No 212
>KOG0254|consensus
Probab=96.96 E-value=0.016 Score=49.80 Aligned_cols=46 Identities=20% Similarity=0.109 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhh
Q psy3292 51 SWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTF 96 (213)
Q Consensus 51 ~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~ 96 (213)
.+......+...++..+..++.||+|||+.++.+...+.++. +.+.
T Consensus 332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~ 378 (513)
T KOG0254|consen 332 FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAV 378 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHH
Confidence 445555556666777778999999999999999999988888 6553
No 213
>KOG2563|consensus
Probab=96.94 E-value=0.0073 Score=50.27 Aligned_cols=91 Identities=19% Similarity=0.202 Sum_probs=74.2
Q ss_pred chhHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHH
Q psy3292 3 SGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLL 82 (213)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~ 82 (213)
+..+++|.+.+..++-.++.++.---.+++...... -++ +.+...|+..++.+....-.++.-++.||+|-|.+.+
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~---~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~l 113 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNS---FYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALL 113 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHH---Hhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHH
Confidence 356788998888888888887665555555555544 344 8888899999999999999999999999999999999
Q ss_pred HHHHHHHHHH-Hhhhc
Q psy3292 83 STATLSAFSV-GQTFG 97 (213)
Q Consensus 83 ~~~~~~~~~~-~~~~~ 97 (213)
++.....++. +-..+
T Consensus 114 lgt~ln~iGa~Ir~is 129 (480)
T KOG2563|consen 114 LGTVLNGIGAWIRLIS 129 (480)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 9999999999 65544
No 214
>KOG3762|consensus
Probab=96.82 E-value=0.0016 Score=55.23 Aligned_cols=78 Identities=19% Similarity=0.221 Sum_probs=65.3
Q ss_pred HHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH--Hh
Q psy3292 17 LSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV--GQ 94 (213)
Q Consensus 17 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~--~~ 94 (213)
+-.+.++..++.+.|.++.+.+ ++++++.+.+.+...-.+-.+.+.+++|+++||+-+|+.++++..+..+.. ..
T Consensus 18 ~f~~~~~~~~g~l~pll~vy~k---QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll 94 (618)
T KOG3762|consen 18 LFYLFFGARFGSLFPLLAVYFK---QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLL 94 (618)
T ss_pred eeeeeeeecccccchHHHHHHH---HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhe
Confidence 3456667778888888888888 899999999999999999999999999999999999888877777766555 44
Q ss_pred hhc
Q psy3292 95 TFG 97 (213)
Q Consensus 95 ~~~ 97 (213)
.+.
T Consensus 95 ~fv 97 (618)
T KOG3762|consen 95 VFV 97 (618)
T ss_pred eec
Confidence 444
No 215
>KOG2532|consensus
Probab=96.79 E-value=0.0054 Score=51.98 Aligned_cols=143 Identities=14% Similarity=0.091 Sum_probs=86.7
Q ss_pred HHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchh---------HHHHH
Q psy3292 13 MSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRK---------WTLLS 83 (213)
Q Consensus 13 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr---------~~~~~ 83 (213)
..+.++.+.+.+.........|.|.+ +-++.+..+.|++.++..+.+.+..++.|.++||.-+| -.=.+
T Consensus 261 wai~~~~f~~~~~~~~l~~y~PtY~~--~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i 338 (466)
T KOG2532|consen 261 WAIWISAFGGNWGFYLLLTYLPTYLK--EVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTI 338 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH--HHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhH
Confidence 33444555555555555566687754 15688999999999999999999999999999998552 11122
Q ss_pred HHHHHHHHH-HhhhcCc-hh--HHHH------hcC-C-----CC----CCCCCcchhhHHHHHHHHHHHHHHHHHHHHH-
Q psy3292 84 TATLSAFSV-GQTFGWS-SP--VLAY------LVS-P-----DS----PVPMSEDESSWVVASMEFGCWAIPFFAGMLC- 142 (213)
Q Consensus 84 ~~~~~~~~~-~~~~~~~-~~--~l~~------~~~-~-----~~----~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~- 142 (213)
+.....+.. ..++.++ .. .+.. ... . .+ .........+.......+...++|.+.|.+.
T Consensus 339 ~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~ 418 (466)
T KOG2532|consen 339 AFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT 418 (466)
T ss_pred HHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence 222233333 3444442 11 1111 000 0 01 1112222335555566778888888888888
Q ss_pred --hHhccchhhhhhccc
Q psy3292 143 --DRIGRKWTLLSTGML 157 (213)
Q Consensus 143 --~~~g~~~~~~~~~~~ 157 (213)
++-.|+++|++.+.+
T Consensus 419 ~~t~~eW~~VF~i~a~i 435 (466)
T KOG2532|consen 419 DNTREEWRIVFLIAAGI 435 (466)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 356899999887766
No 216
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=96.78 E-value=0.049 Score=44.80 Aligned_cols=39 Identities=15% Similarity=0.017 Sum_probs=33.4
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHH
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWT 80 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~ 80 (213)
.++.++.+.++......++..+++++.+++.||++|+..
T Consensus 237 ~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 275 (394)
T PRK11652 237 VLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW 275 (394)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999999999999999999985443
No 217
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=96.65 E-value=0.026 Score=47.49 Aligned_cols=122 Identities=20% Similarity=0.209 Sum_probs=78.4
Q ss_pred hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhc-----hhHHHHHHHHHHHHHH-HhhhcCc----h
Q psy3292 31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-----RKWTLLSTATLSAFSV-GQTFGWS----S 100 (213)
Q Consensus 31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~G-----rr~~~~~~~~~~~~~~-~~~~~~~----~ 100 (213)
...|.+++ +++.++.+.....+...+-- ..-++.|.++|-+- ||+-++++.++..++. ..+..+. .
T Consensus 11 ~~~~~l~~---~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~ 86 (433)
T PF03092_consen 11 AIYPFLKD---DLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSA 86 (433)
T ss_pred HHHHHHHH---HcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 45578888 89999999998888777764 44567899999863 5666666776665555 4443222 2
Q ss_pred hHHHH------------------hcCCC---CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 101 PVLAY------------------LVSPD---SPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 101 ~~l~~------------------~~~~~---~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
....+ ...+. .|.. +....+.....-.+|..++..+.|.+.+..+.+..+.+.++.
T Consensus 87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~ 163 (433)
T PF03092_consen 87 AIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAAL 163 (433)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHH
Confidence 21111 11111 1111 222234444556789999999999999999999988776555
No 218
>KOG0252|consensus
Probab=96.64 E-value=0.003 Score=52.71 Aligned_cols=117 Identities=15% Similarity=-0.035 Sum_probs=77.2
Q ss_pred HHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhH-------HHH----------------hcCCCCCCC
Q psy3292 59 FGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPV-------LAY----------------LVSPDSPVP 114 (213)
Q Consensus 59 ~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~-------l~~----------------~~~~~~~~~ 114 (213)
.+...|.++..++.|++|||+..+-+.+++.+.. ..+..+|... ++. ...+..|..
T Consensus 359 ~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPar 438 (538)
T KOG0252|consen 359 CSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPAR 438 (538)
T ss_pred HccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHH
Confidence 3445588888899999999999999999999999 8888888311 000 122233333
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHh-----HhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHH
Q psy3292 115 MSEDESSWVVASMEFGCWAIPFFAGMLCD-----RIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWT 182 (213)
Q Consensus 115 ~~~~~~~~~~~~~~lg~~~g~~~~g~l~~-----~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~ 182 (213)
++...-+.-....-+|..+|.....++.+ ..|-++++++...+++. -.+..+++||+..-.
T Consensus 439 vR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~-------gi~~T~l~pEtk~~~ 504 (538)
T KOG0252|consen 439 VRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLL-------GILFTLLIPETKGKS 504 (538)
T ss_pred HhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHH-------hHheeEEeecccccC
Confidence 33333444444556788888888888888 67888888877766321 112233338887544
No 219
>KOG2533|consensus
Probab=96.63 E-value=0.02 Score=48.86 Aligned_cols=73 Identities=19% Similarity=0.104 Sum_probs=53.1
Q ss_pred HHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh----hchhHHHHHHHHHHHHHH
Q psy3292 18 SAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR----IGRKWTLLSTATLSAFSV 92 (213)
Q Consensus 18 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~----~Grr~~~~~~~~~~~~~~ 92 (213)
+.+.........+.-+|.+.+ + ..+.++.+.+.+...+.++.+++.+..|+++|| ..+|........+.....
T Consensus 281 ~~~~~~lv~~~~~~~lpl~l~-~-~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g 357 (495)
T KOG2533|consen 281 CYFFLKLVNYGFSYWLPLYLK-S-NGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIG 357 (495)
T ss_pred HHHHHhhccccHHHHHHHHHH-c-CCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 333333334445566677776 1 356899999999999999999999999999999 677777666665544433
No 220
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=96.60 E-value=0.07 Score=38.32 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=46.2
Q ss_pred hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHHHhhhcCchhHH
Q psy3292 31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSVGQTFGWSSPVL 103 (213)
Q Consensus 31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~l 103 (213)
+++..+.+ +..-++++..-..-.++......+++++.+.+.+++|.|+.++++.+.+.+....-+-++.+.+
T Consensus 21 svi~s~~~-~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l 92 (156)
T PF05978_consen 21 SVIHSVHE-RNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTL 92 (156)
T ss_pred HHHHHHhh-cCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34444444 2222344444444555666667788888999999999999999999998877722234444443
No 221
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=96.03 E-value=0.67 Score=38.63 Aligned_cols=121 Identities=6% Similarity=-0.099 Sum_probs=64.0
Q ss_pred hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh-----hcCchhHHHH
Q psy3292 32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT-----FGWSSPVLAY 105 (213)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~-----~~~~~~~l~~ 105 (213)
..|.+.+ +..+.++.+.++.......+..+++.+.+.+.++.++++.......+..++. ... ..++......
T Consensus 240 ~~P~~l~--~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~ 317 (413)
T PRK15403 240 VSPVILI--DAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVL 317 (413)
T ss_pred hChHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence 3465543 1457899999999888888888888888887655444443332222222222 221 1222211111
Q ss_pred ---------------hc-CCCCC-CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhc
Q psy3292 106 ---------------LV-SPDSP-VPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTG 155 (213)
Q Consensus 106 ---------------~~-~~~~~-~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~ 155 (213)
.. ....+ ....+...+........+...++..++++.+. +-+..+....
T Consensus 318 ~~~l~~~G~~~~~p~~~~~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~ 383 (413)
T PRK15403 318 GTSLYAFGIGLIFPTLFRFTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLA 383 (413)
T ss_pred HHHHHHHHHHHHhHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHH
Confidence 00 00111 11234444556666666777777788877655 5455554433
No 222
>PRK11462 putative transporter; Provisional
Probab=95.90 E-value=0.062 Score=45.55 Aligned_cols=57 Identities=11% Similarity=-0.034 Sum_probs=45.4
Q ss_pred hhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh----hchhHHHH-HHHHHHHHHH
Q psy3292 33 LAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR----IGRKWTLL-STATLSAFSV 92 (213)
Q Consensus 33 ~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~----~Grr~~~~-~~~~~~~~~~ 92 (213)
...+.+ ..++++...|.+..+.-+--++.-++.|.++|| +|||+..+ ++.....++.
T Consensus 33 ~~fyt~---~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~ 94 (460)
T PRK11462 33 MFFYTD---IFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVC 94 (460)
T ss_pred HHHHHH---hhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHH
Confidence 345555 779999999999999999999999999999995 79866554 4555666555
No 223
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=95.88 E-value=3.5e-05 Score=64.61 Aligned_cols=109 Identities=19% Similarity=0.215 Sum_probs=60.6
Q ss_pred hhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh----hcCch------h
Q psy3292 33 LAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT----FGWSS------P 101 (213)
Q Consensus 33 ~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~----~~~~~------~ 101 (213)
.|.+.+ ..+.++. -.......+...++.+...++.||+|||+.++.+.....+.. ..+ ..++. .
T Consensus 276 ~~~i~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (451)
T PF00083_consen 276 SPSIFE---NAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSIL 350 (451)
T ss_pred cccccc---ccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 355555 4444444 222223334455677777799999999999998888877777 553 11221 1
Q ss_pred HHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc
Q psy3292 102 VLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG 146 (213)
Q Consensus 102 ~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g 146 (213)
.+.. ...|..|...+....+.......++..+++.+...+.+..+
T Consensus 351 ~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~ 413 (451)
T PF00083_consen 351 SIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG 413 (451)
T ss_pred cceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1111 11223333333333445555555666666666666666666
No 224
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=95.88 E-value=0.16 Score=43.20 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhhhhhhHHhhhhhch-----hHHH--HHHHHHHHHHH-Hhhh
Q psy3292 50 SSWVVASMEFGCWAIPFFAGMLCDRIGR-----KWTL--LSTATLSAFSV-GQTF 96 (213)
Q Consensus 50 ~~~~~s~~~~g~~ig~~~~g~l~d~~Gr-----r~~~--~~~~~~~~~~~-~~~~ 96 (213)
.+++.+...+...+.+++..++-.|.+| +... .++.++..++. ..++
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~ 368 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAA 368 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888776654444444 2333 56666666666 5543
No 225
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=95.80 E-value=0.44 Score=39.74 Aligned_cols=102 Identities=13% Similarity=0.094 Sum_probs=69.6
Q ss_pred CCCCChhhHH-HHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH--------------
Q psy3292 42 PVPMSEDESS-WVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY-------------- 105 (213)
Q Consensus 42 ~~~~s~~~~~-~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~-------------- 105 (213)
+.++|+.|.. -+.-...-..++..++...++|..|.|+++++..+...+.. +..++++...+-+
T Consensus 34 ~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~eva 113 (412)
T PF01770_consen 34 DKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAEVA 113 (412)
T ss_pred ccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHH
Confidence 3788877764 34445556678888999999999999999999999999999 9999999877755
Q ss_pred ---hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3292 106 ---LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD 143 (213)
Q Consensus 106 ---~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~ 143 (213)
..-...|.....+..+..++...+|..++.+++-.+..
T Consensus 114 y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 114 YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111222222333456666666666666665544443
No 226
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=95.73 E-value=0.0027 Score=54.84 Aligned_cols=75 Identities=15% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh
Q psy3292 18 SAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT 95 (213)
Q Consensus 18 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~ 95 (213)
..+.+++..+.....+..+.+ .++++.++.|++.+.+-++..+..++..++.+|-.|-+.+-++.++..++. +.+
T Consensus 11 ~~~~q~~~~g~~~~~lttiEr---RF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~ 86 (539)
T PF03137_consen 11 LGLFQMMVSGYVNSSLTTIER---RFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFA 86 (539)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHh
Confidence 344446777777777788877 899999999999999999999999999999999888777888888888887 665
No 227
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=95.57 E-value=0.33 Score=40.46 Aligned_cols=54 Identities=15% Similarity=-0.020 Sum_probs=39.0
Q ss_pred ChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHH-HHHHH-HhhhcCc
Q psy3292 46 SEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATL-SAFSV-GQTFGWS 99 (213)
Q Consensus 46 s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~-~~~~~-~~~~~~~ 99 (213)
+.+..+...+...+-.++-++..|.++|+.|+||..+-.... ..++. ...+.++
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~ 111 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP 111 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC
Confidence 345667777788888888999999999999976665555544 44444 6666665
No 228
>PRK09848 glucuronide transporter; Provisional
Probab=95.53 E-value=0.088 Score=44.27 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=43.8
Q ss_pred hhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhh----chhHHH-HHHHHHHHHHH
Q psy3292 34 AYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI----GRKWTL-LSTATLSAFSV 92 (213)
Q Consensus 34 ~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~----Grr~~~-~~~~~~~~~~~ 92 (213)
+.+.+ ..++++.+.|.+.+...+...+..++.|.++||. |||+.. ..+.+...+..
T Consensus 33 ~y~~~---~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~ 93 (448)
T PRK09848 33 SYYTD---VAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFS 93 (448)
T ss_pred HHHHH---HcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHH
Confidence 45555 6789999999999999999999999999999996 777655 44444343333
No 229
>KOG4686|consensus
Probab=95.43 E-value=0.014 Score=46.20 Aligned_cols=138 Identities=12% Similarity=0.105 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh-hchhHHHHHHH
Q psy3292 7 RQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR-IGRKWTLLSTA 85 (213)
Q Consensus 7 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~-~Grr~~~~~~~ 85 (213)
++..+....++-.|-.-+.+-.++..+.+++. |.+++.+...++-+.+..=..+-+++.|++.|| +|-|..-++-+
T Consensus 41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~---d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~ 117 (459)
T KOG4686|consen 41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKL---DSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILC 117 (459)
T ss_pred hHHHHHHHHHHhcccceeecCCchhhhhhhhc---ccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHH
Confidence 34455555555444444445555566677777 778888888888899998889999999999996 77776666666
Q ss_pred HHHHHHH-Hhh---hcCchhHHHH------h-------cCCC-CCCCCCcch----hhHHHHHHHHHHHHHHHHHHHHHh
Q psy3292 86 TLSAFSV-GQT---FGWSSPVLAY------L-------VSPD-SPVPMSEDE----SSWVVASMEFGCWAIPFFAGMLCD 143 (213)
Q Consensus 86 ~~~~~~~-~~~---~~~~~~~l~~------~-------~~~~-~~~~~~~~~----~~~~~~~~~lg~~~g~~~~g~l~~ 143 (213)
+...++- +.+ ....+|++.. + .+.. ...+...++ .+...++..+|..+--.+.+++.|
T Consensus 118 ~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~ 197 (459)
T KOG4686|consen 118 IFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYD 197 (459)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHH
Confidence 6666666 554 3456666655 1 1111 111223333 355666677788777777888888
Q ss_pred Hhcc
Q psy3292 144 RIGR 147 (213)
Q Consensus 144 ~~g~ 147 (213)
..|+
T Consensus 198 ~~~~ 201 (459)
T KOG4686|consen 198 TMGR 201 (459)
T ss_pred HHHH
Confidence 7765
No 230
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=95.37 E-value=0.56 Score=40.26 Aligned_cols=96 Identities=11% Similarity=0.021 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhhhhhhh----HHhhhhhchhHHHHHHHHHHHHHH-HhhhcCch----------hHHHH---------
Q psy3292 50 SSWVVASMEFGCWAIPFFA----GMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSS----------PVLAY--------- 105 (213)
Q Consensus 50 ~~~~~s~~~~g~~ig~~~~----g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~----------~~l~~--------- 105 (213)
.+++.++..+...+..++. +++.||++..+.+.++.++..++. ......++ +....
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 5566666665555555555 666666666677888888888888 65554432 22221
Q ss_pred hcCCC----CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHh
Q psy3292 106 LVSPD----SPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI 145 (213)
Q Consensus 106 ~~~~~----~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~ 145 (213)
...+. ......+...+...+.+.++..+|+.++|.+.+.+
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~ 441 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLM 441 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11110 01122344567777788888888888888887643
No 231
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=94.84 E-value=1.7 Score=36.20 Aligned_cols=103 Identities=20% Similarity=0.056 Sum_probs=69.1
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhh-hhchhHHHHHHHHHHHHHH-Hhhh---cCchhHHHH-----------
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCD-RIGRKWTLLSTATLSAFSV-GQTF---GWSSPVLAY----------- 105 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d-~~Grr~~~~~~~~~~~~~~-~~~~---~~~~~~l~~----------- 105 (213)
-++.|..|...+++....|.++|-...|++.. |.++|++..+++....++. ...+ ..+.+.+..
T Consensus 238 Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~ 317 (403)
T PF03209_consen 238 VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGL 317 (403)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhH
Confidence 67899999999999999999999999998887 6888888888888877777 5443 334344333
Q ss_pred -------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy3292 106 -------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR 144 (213)
Q Consensus 106 -------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~ 144 (213)
...............+.......+...+|.+++|.+.|.
T Consensus 318 f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 318 FTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred HHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111112223333444444555666677777777765
No 232
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=94.80 E-value=0.25 Score=40.93 Aligned_cols=110 Identities=15% Similarity=0.018 Sum_probs=68.2
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhc-----hhHHHHHHHHH-HHHHH-Hhh-----hcC-------chhH
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-----RKWTLLSTATL-SAFSV-GQT-----FGW-------SSPV 102 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~G-----rr~~~~~~~~~-~~~~~-~~~-----~~~-------~~~~ 102 (213)
|++++....+.+.++..+-.. ....+|+.+|+.+ ||..+++.... ...+. ... .+. +.+.
T Consensus 9 EL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~ 87 (403)
T PF03209_consen 9 ELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWL 87 (403)
T ss_pred HhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHH
Confidence 567777888887777776654 5788899999888 77665544333 33322 222 122 1111
Q ss_pred H-HH---------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhh
Q psy3292 103 L-AY---------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLL 152 (213)
Q Consensus 103 l-~~---------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~ 152 (213)
- .. +..+..|+..+....+..-.+..+|..++..+.|.+.|.++......
T Consensus 88 g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~ 159 (403)
T PF03209_consen 88 GLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQ 159 (403)
T ss_pred HHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHH
Confidence 1 11 33444455555555566667778899999999999988876655443
No 233
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=94.54 E-value=2 Score=34.44 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=34.8
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 114 PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 114 ~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
..++.+.+...+.+..+..+|.++++.+.||+|.|.........
T Consensus 174 g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l 217 (310)
T TIGR01272 174 GLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFL 217 (310)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 45566667788888899999999999999999987766555443
No 234
>KOG0255|consensus
Probab=94.10 E-value=0.12 Score=44.42 Aligned_cols=65 Identities=23% Similarity=0.076 Sum_probs=48.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccchhhhHHHHHHH----HHHHHHHHHHHHHHhhcC
Q psy3292 118 DESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLS----TGMLCDRIGRKWTLLSTG 187 (213)
Q Consensus 118 ~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~es~~~~g~~~g 187 (213)
.......+.+.+|..+|+++.|.++|++|||.+++.+.+... +..+... +..+ -..|...|+..+
T Consensus 118 ~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~---i~~~~~a~a~~~~~~--~~~Rfl~G~~~~ 186 (521)
T KOG0255|consen 118 TLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFI---IFGILTAFAPNYWMF--LIFRFLSGFFGS 186 (521)
T ss_pred hHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHH---HHHHHHHHhCcHHHH--HHHHHHHHhhcc
Confidence 344667788999999999999999999999999988887733 2333332 2345 788888887654
No 235
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=94.00 E-value=0.21 Score=44.24 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=45.1
Q ss_pred hhhhhhCCCCCCCCChhhHHHHHHHHHH-HHhhhhhhhHHhhhhhc--hhHHHHHHHHHHHHHH
Q psy3292 32 VLAYLVSPDSPVPMSEDESSWVVASMEF-GCWAIPFFAGMLCDRIG--RKWTLLSTATLSAFSV 92 (213)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~-g~~ig~~~~g~l~d~~G--rr~~~~~~~~~~~~~~ 92 (213)
..|.+.+ ..++.++.+.+++.+...+ +..+|.++.|+++||++ .|+.+..+.+...++.
T Consensus 352 ~lP~yl~--~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~ 413 (633)
T TIGR00805 352 FLPKYLE--NQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY 413 (633)
T ss_pred HHHHHHH--HHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence 4565543 1578999999999988776 67899999999999998 4567776666666654
No 236
>KOG0637|consensus
Probab=93.87 E-value=0.029 Score=46.92 Aligned_cols=64 Identities=17% Similarity=0.149 Sum_probs=48.6
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhh----hhchhHHHHHHHHHH-HHHH-HhhhcCchhHHHH
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCD----RIGRKWTLLSTATLS-AFSV-GQTFGWSSPVLAY 105 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d----~~Grr~~~~~~~~~~-~~~~-~~~~~~~~~~l~~ 105 (213)
..+++....+.+.-+-.+...+.+++.|..+| |+||||.++.+.... .++. +..++.+....+.
T Consensus 61 ~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lg 130 (498)
T KOG0637|consen 61 SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLG 130 (498)
T ss_pred HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhc
Confidence 47888888888888888888999999999999 599988877666554 4455 6666665554433
No 237
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=93.64 E-value=2.2 Score=36.59 Aligned_cols=43 Identities=12% Similarity=-0.005 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhhhhhhhHHhhhhhchhHH-------HHHHHHHHHHHH
Q psy3292 50 SSWVVASMEFGCWAIPFFAGMLCDRIGRKWT-------LLSTATLSAFSV 92 (213)
Q Consensus 50 ~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~-------~~~~~~~~~~~~ 92 (213)
.+++.+...+...+.+++.+++.||+|||+. +.++.++..++.
T Consensus 311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~ 360 (489)
T PRK10207 311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGF 360 (489)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHH
Confidence 4566667777777888889999999999862 445555544444
No 238
>KOG2563|consensus
Probab=93.63 E-value=0.56 Score=39.49 Aligned_cols=50 Identities=16% Similarity=0.154 Sum_probs=38.8
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhch-hHHHHHHHHHHHHH
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGR-KWTLLSTATLSAFS 91 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Gr-r~~~~~~~~~~~~~ 91 (213)
..+.+....|+.......++++|+...|.+.||... |.+.........++
T Consensus 295 ~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 295 PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG 345 (480)
T ss_pred cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 334455788999999999999999999999999876 55555555555555
No 239
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=93.54 E-value=2.4 Score=36.06 Aligned_cols=62 Identities=16% Similarity=-0.001 Sum_probs=47.7
Q ss_pred hhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh----hchhHH-HHHHHHHHHHHH-HhhhcC
Q psy3292 34 AYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR----IGRKWT-LLSTATLSAFSV-GQTFGW 98 (213)
Q Consensus 34 ~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~----~Grr~~-~~~~~~~~~~~~-~~~~~~ 98 (213)
-.|.+ ..++++...|.+..+.=+--++.-++.|.+.|| +||+|. ++.+.+...+.. ++-.++
T Consensus 37 ~fYTd---v~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p 104 (467)
T COG2211 37 FFYTD---VFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITP 104 (467)
T ss_pred HHHhc---ccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCC
Confidence 44555 789999999999999889999999999999995 887554 555556677666 555554
No 240
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=93.48 E-value=0.58 Score=41.09 Aligned_cols=48 Identities=25% Similarity=0.491 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHhhhhhch-hHHHHHHHHHHHHHH-Hhh
Q psy3292 48 DESSWVVASMEFGCWAIPFFAGMLCDRIGR-KWTLLSTATLSAFSV-GQT 95 (213)
Q Consensus 48 ~~~~~~~s~~~~g~~ig~~~~g~l~d~~Gr-r~~~~~~~~~~~~~~-~~~ 95 (213)
.+.++......+|..+|+.+.|.+..+++| |+.++.+.+++.++. .++
T Consensus 349 ~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama 398 (599)
T PF06609_consen 349 TEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMA 398 (599)
T ss_pred ceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHH
Confidence 357888888999999999999999999988 666667777777665 443
No 241
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=93.22 E-value=1.1 Score=37.76 Aligned_cols=104 Identities=9% Similarity=-0.017 Sum_probs=77.6
Q ss_pred CCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hh-hhcC--chh------HHHH--------
Q psy3292 44 PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQ-TFGW--SSP------VLAY-------- 105 (213)
Q Consensus 44 ~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~-~~~~--~~~------~l~~-------- 105 (213)
+.++...+.+.....++..+|..+......+..-|+++....++..+.. .. .+.+ |.. .+..
T Consensus 251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~ 330 (433)
T PF03092_consen 251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV 330 (433)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence 4889999999988889999999999888888888888877777766554 21 1111 110 0000
Q ss_pred -----------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhcc
Q psy3292 106 -----------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGR 147 (213)
Q Consensus 106 -----------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~ 147 (213)
+..+..|........+.+.++.++|..++..++..+.+.+|-
T Consensus 331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~v 383 (433)
T PF03092_consen 331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGV 383 (433)
T ss_pred HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 455667777777777999999999999999999999988763
No 242
>KOG3626|consensus
Probab=92.86 E-value=0.28 Score=43.76 Aligned_cols=82 Identities=17% Similarity=0.202 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHH
Q psy3292 12 GMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFS 91 (213)
Q Consensus 12 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~ 91 (213)
..+.++..+.+++..+.....+..+-+ .++++.++.|++.+.+-+|..+...+..++..|..|-+.+-++++++.++
T Consensus 99 l~~l~~~~~~q~l~~~y~~s~IttiEr---RF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lg 175 (735)
T KOG3626|consen 99 LVLLSLAAFAQGLYVGYFNSVITTIER---RFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLG 175 (735)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhh---hcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHH
Confidence 344555666777777777777777766 88999999999999999999999999999999999988898999998888
Q ss_pred H-Hhhh
Q psy3292 92 V-GQTF 96 (213)
Q Consensus 92 ~-~~~~ 96 (213)
. +.++
T Consensus 176 sll~al 181 (735)
T KOG3626|consen 176 SLLFAL 181 (735)
T ss_pred HHHHhC
Confidence 8 6664
No 243
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=92.84 E-value=0.45 Score=40.64 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=55.8
Q ss_pred CCCCCcch-hhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccchhhhHHHHHHHH--HHHHHHHHHHHHHhhcC
Q psy3292 112 PVPMSEDE-SSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLST--GMLCDRIGRKWTLLSTG 187 (213)
Q Consensus 112 ~~~~~~~~-~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~es~~~~g~~~g 187 (213)
...+++.+ .+.+.+.+..+..+..+++|+++|++|.|+.+....+. ..+.+.+..+ .+..+...|..+|+..|
T Consensus 55 elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~---Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA 130 (511)
T TIGR00806 55 VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALS---FVCVWLLLLLGTSVWHMQLMEVFYSVTMA 130 (511)
T ss_pred HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777 89999999999999999999999999999998877766 3334444322 24444788888888876
No 244
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=92.53 E-value=6.2 Score=33.85 Aligned_cols=45 Identities=11% Similarity=-0.005 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhhhhhhHHhhhhhch-hHHHHHHHHHHHHHH-Hhh
Q psy3292 51 SWVVASMEFGCWAIPFFAGMLCDRIGR-KWTLLSTATLSAFSV-GQT 95 (213)
Q Consensus 51 ~~~~s~~~~g~~ig~~~~g~l~d~~Gr-r~~~~~~~~~~~~~~-~~~ 95 (213)
.+....+.+...+.+++..++.+|+|+ |++..++.++..++. ...
T Consensus 308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~ 354 (477)
T TIGR01301 308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATV 354 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Confidence 344555666666888899999999995 677677777776666 544
No 245
>KOG2816|consensus
Probab=92.37 E-value=2.2 Score=36.35 Aligned_cols=103 Identities=9% Similarity=-0.039 Sum_probs=75.0
Q ss_pred CCCCCChhhHHHHHHHHHHHHhhhhhhhH-HhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH-------------
Q psy3292 41 SPVPMSEDESSWVVASMEFGCWAIPFFAG-MLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY------------- 105 (213)
Q Consensus 41 ~~~~~s~~~~~~~~s~~~~g~~ig~~~~g-~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~------------- 105 (213)
..++.++.+.+.+.+...+-..+++.+.. .+...+|-|+.+.++.....+.. ..+++++.|+++.
T Consensus 270 ~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~~~p 349 (463)
T KOG2816|consen 270 AKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGIVFP 349 (463)
T ss_pred eecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcchhH
Confidence 36788999999888888888888877777 78888999999999999999999 9999999998765
Q ss_pred ----hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy3292 106 ----LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD 143 (213)
Q Consensus 106 ----~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~ 143 (213)
..+...+.....+..++...+-.+...+++.+-+.+..
T Consensus 350 a~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 350 AIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred HHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 11222222333444455666666666666666665543
No 246
>PRK03612 spermidine synthase; Provisional
Probab=91.86 E-value=7 Score=33.93 Aligned_cols=114 Identities=21% Similarity=0.150 Sum_probs=64.9
Q ss_pred CCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHH--HHHHHH-Hh----hhcCchhHHHH--------hcC
Q psy3292 44 PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTAT--LSAFSV-GQ----TFGWSSPVLAY--------LVS 108 (213)
Q Consensus 44 ~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~--~~~~~~-~~----~~~~~~~~l~~--------~~~ 108 (213)
+-+....+.+.+++..|..+|+.+.+++.++.-|+....-..+ +..++. +. .+......... +..
T Consensus 46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G 125 (521)
T PRK03612 46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIG 125 (521)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688889999999999999999999988755444432221111 011111 11 11101111000 111
Q ss_pred CCCCC--------C--CCcchhhHHHHHHHHHHHHHHHHHHHHH-hHhccchhhhhhccc
Q psy3292 109 PDSPV--------P--MSEDESSWVVASMEFGCWAIPFFAGMLC-DRIGRKWTLLSTGML 157 (213)
Q Consensus 109 ~~~~~--------~--~~~~~~~~~~~~~~lg~~~g~~~~g~l~-~~~g~~~~~~~~~~~ 157 (213)
...|. . ..+...+.+.+..++|..+|+++.+++. ..+|-..+.++.+.+
T Consensus 126 ~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l 185 (521)
T PRK03612 126 MEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSL 185 (521)
T ss_pred HHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 11111 1 1234567888899999999999988886 478876555544444
No 247
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=91.76 E-value=4.8 Score=34.48 Aligned_cols=49 Identities=18% Similarity=0.066 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHH-HH-Hhhh
Q psy3292 48 DESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAF-SV-GQTF 96 (213)
Q Consensus 48 ~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~-~~-~~~~ 96 (213)
+..++..++..+-..+-.++.|.++|+-|+||.++....+..+ .. ...+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~ 120 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWF 120 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHH
Confidence 4456788888888899999999999999987776666555443 44 4444
No 248
>KOG1330|consensus
Probab=91.50 E-value=0.53 Score=39.76 Aligned_cols=71 Identities=13% Similarity=0.038 Sum_probs=50.1
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccchhhhHHHHHHHHH--HHHHHHHHHHHHhhc
Q psy3292 113 VPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTG--MLCDRIGRKWTLLST 186 (213)
Q Consensus 113 ~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~es~~~~g~~~ 186 (213)
.+++....+.++....+...+..++.|+++|+++|++++.++..+ ..+..+...+. .+....+|-+.|++.
T Consensus 63 fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i---W~~Av~~~~fs~~Fwq~~l~R~~vGiGe 135 (493)
T KOG1330|consen 63 FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI---WTLAVFASGFSNHFWQVLLCRGFVGIGE 135 (493)
T ss_pred cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 356667778999999999999999999999999999998777655 33333332221 222266776666654
No 249
>KOG2615|consensus
Probab=91.08 E-value=0.96 Score=37.48 Aligned_cols=111 Identities=14% Similarity=0.041 Sum_probs=78.7
Q ss_pred CCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhc--hhHHHHHHHHHHHHHH-HhhhcCchhHHHH------------
Q psy3292 41 SPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG--RKWTLLSTATLSAFSV-GQTFGWSSPVLAY------------ 105 (213)
Q Consensus 41 ~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~G--rr~~~~~~~~~~~~~~-~~~~~~~~~~l~~------------ 105 (213)
..++.++.+.|.+.+...+++++-+....+..||.. -+-.+..+..++.=.. ....++....+..
T Consensus 290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~ 369 (451)
T KOG2615|consen 290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASV 369 (451)
T ss_pred CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999876 4544444444444333 4444444433322
Q ss_pred ------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHh-ccchhh
Q psy3292 106 ------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI-GRKWTL 151 (213)
Q Consensus 106 ------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~-g~~~~~ 151 (213)
+.....|...+....|...+...++-++||.++|.+..+. +++..+
T Consensus 370 vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~ 422 (451)
T KOG2615|consen 370 VTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAY 422 (451)
T ss_pred hHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCcee
Confidence 3444556666677778888889999999999999887663 444433
No 250
>KOG1237|consensus
Probab=90.20 E-value=8.6 Score=33.82 Aligned_cols=128 Identities=19% Similarity=0.215 Sum_probs=84.3
Q ss_pred ccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh-hchhHHHHHHHHHHHHHH-HhhhcCchhHHH
Q psy3292 27 GWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR-IGRKWTLLSTATLSAFSV-GQTFGWSSPVLA 104 (213)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~ 104 (213)
++....+..+.+ +++.+...+.-..+.+..-....++..++++|. +||-+++.++.++..++. +...+.....+.
T Consensus 55 g~~~nlv~ylt~---~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~ 131 (571)
T KOG1237|consen 55 GLVSNLVTYLTL---ELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALL 131 (571)
T ss_pred cchhHHHHHHHH---HhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 444555566666 677777888888888888888999999999996 789999999999988886 544332222111
Q ss_pred ----------------------H---------------------hcCCCCCCCCCcc------hhhHHHHHHHHHHHHHH
Q psy3292 105 ----------------------Y---------------------LVSPDSPVPMSED------ESSWVVASMEFGCWAIP 135 (213)
Q Consensus 105 ----------------------~---------------------~~~~~~~~~~~~~------~~~~~~~~~~lg~~~g~ 135 (213)
+ +.....+....+. -..|.....+.|..+..
T Consensus 132 p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~ 211 (571)
T KOG1237|consen 132 PFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQ 211 (571)
T ss_pred CccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHH
Confidence 1 0111111000111 11555556677777777
Q ss_pred HHHHHHHhHhccchhhhhhccc
Q psy3292 136 FFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 136 ~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
.+.-++-|..||...+-+....
T Consensus 212 t~~vyiq~~~~w~lgf~i~~~~ 233 (571)
T KOG1237|consen 212 TVLVYIQDNVGWKLGFGIPTVL 233 (571)
T ss_pred HHHHhhhhcccceeeccHHHHH
Confidence 7777777888999888766665
No 251
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=89.40 E-value=1.7 Score=37.31 Aligned_cols=44 Identities=14% Similarity=0.376 Sum_probs=36.9
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhHh-ccchhhhhhccc
Q psy3292 114 PMSEDESSWVVASMEFGCWAIPFFAGMLCDRI-GRKWTLLSTGML 157 (213)
Q Consensus 114 ~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~-g~~~~~~~~~~~ 157 (213)
..++.+.+...+.+.....++++++|+++|++ |+|..+.++.+.
T Consensus 41 gls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 41 KYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 45666777788888888899999999999999 999988777666
No 252
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=89.34 E-value=1.8 Score=29.09 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=36.7
Q ss_pred ChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH
Q psy3292 46 SEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV 92 (213)
Q Consensus 46 s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~ 92 (213)
.....+.......++..+++...+.+.|+.|.+..+.+......+..
T Consensus 85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (141)
T TIGR00880 85 RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAF 131 (141)
T ss_pred hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHH
Confidence 34556677778889999999999999999998887777666655554
No 253
>PTZ00207 hypothetical protein; Provisional
Probab=88.82 E-value=3 Score=36.78 Aligned_cols=51 Identities=8% Similarity=0.004 Sum_probs=32.2
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccchhhhHHHHHH
Q psy3292 114 PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLL 168 (213)
Q Consensus 114 ~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~l~ 168 (213)
..+..+.++..+... ......++.|++.|++|+|.++.++.+. ..+++++.
T Consensus 58 gls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll---~~iG~ll~ 108 (591)
T PTZ00207 58 NLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTV---FCLGTLLF 108 (591)
T ss_pred CcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHH---HHHHHHHH
Confidence 344445555554422 2233555789999999999999888777 33344444
No 254
>PF12832 MFS_1_like: MFS_1 like family
Probab=86.39 E-value=2 Score=26.78 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=36.1
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhc
Q psy3292 113 VPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTG 155 (213)
Q Consensus 113 ~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~ 155 (213)
...+..+.+.+.++..+-..+++++.|.++|+.+++.......
T Consensus 30 ~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~ 72 (77)
T PF12832_consen 30 LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGS 72 (77)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence 4567778899999999999999999999999999887765443
No 255
>KOG4332|consensus
Probab=86.19 E-value=1.3 Score=35.16 Aligned_cols=64 Identities=14% Similarity=0.046 Sum_probs=40.9
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHHHhhhcCchhHHHH
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSVGQTFGWSSPVLAY 105 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~l~~ 105 (213)
.++..+.+++.+..+-.........+.|-++||-|||+.-..-++.+.++++.-.++.+-.+++
T Consensus 66 tYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTKhSpqYkVLmV 129 (454)
T KOG4332|consen 66 TYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKHSPQYKVLMV 129 (454)
T ss_pred hcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhhcCCceEEEee
Confidence 4566677777766666666666677788899999999865544444444444444444444433
No 256
>KOG3574|consensus
Probab=85.95 E-value=1.4 Score=36.59 Aligned_cols=126 Identities=12% Similarity=0.142 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhh-----hhchhHHHH---
Q psy3292 11 AGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD-----RIGRKWTLL--- 82 (213)
Q Consensus 11 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d-----~~Grr~~~~--- 82 (213)
......+-...+|.-.|..+ .+|.+.+ ..+.|.++.+...-++. -.---+++.|+.| |+||||..+
T Consensus 32 ~illLl~LYllQGiP~GL~~-~iP~lL~---ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~ 105 (510)
T KOG3574|consen 32 SILLLLFLYLLQGIPLGLIG-AIPLLLQ---AKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPC 105 (510)
T ss_pred hHHHHHHHHHHcCCchhHhh-hhHHHhc---CCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeeh
Confidence 34455556788888898887 8898887 67788777765543322 1233467788888 999998743
Q ss_pred ---HHHHHHHHHH-H-hhhc-----CchhHH--H--H--hcCCCCCC--------CCCcchhhHHHHHHHHHHHHHHHHH
Q psy3292 83 ---STATLSAFSV-G-QTFG-----WSSPVL--A--Y--LVSPDSPV--------PMSEDESSWVVASMEFGCWAIPFFA 138 (213)
Q Consensus 83 ---~~~~~~~~~~-~-~~~~-----~~~~~l--~--~--~~~~~~~~--------~~~~~~~~~~~~~~~lg~~~g~~~~ 138 (213)
++.++..++. . ...+ ++...+ . . +...+.+. .++.++.+..++..++|...|.+++
T Consensus 106 q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~ 185 (510)
T KOG3574|consen 106 QYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLG 185 (510)
T ss_pred HHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhh
Confidence 3444433333 2 1111 222221 1 0 12222222 2345555777777788888888776
Q ss_pred HHHH
Q psy3292 139 GMLC 142 (213)
Q Consensus 139 g~l~ 142 (213)
+.+-
T Consensus 186 ~~if 189 (510)
T KOG3574|consen 186 NVVF 189 (510)
T ss_pred ccee
Confidence 6553
No 257
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=84.27 E-value=23 Score=30.38 Aligned_cols=53 Identities=6% Similarity=-0.087 Sum_probs=41.5
Q ss_pred CChhhHHHHHHHHHHHHhhh-hhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc
Q psy3292 45 MSEDESSWVVASMEFGCWAI-PFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG 97 (213)
Q Consensus 45 ~s~~~~~~~~s~~~~g~~ig-~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~ 97 (213)
.+.+...++-+...+-+.+. .++.+++++|++|++.+......+.... +.++.
T Consensus 40 ~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~v 94 (472)
T TIGR00769 40 SGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFV 94 (472)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHH
Confidence 34567888888887776666 8899999999999999888877777666 55443
No 258
>KOG3098|consensus
Probab=80.13 E-value=13 Score=31.71 Aligned_cols=50 Identities=26% Similarity=0.151 Sum_probs=42.4
Q ss_pred HHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHH
Q psy3292 54 VASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVL 103 (213)
Q Consensus 54 ~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l 103 (213)
.++......+.+++.+.+.|+.|.|+.+.++...+.... ...+-+.+..+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y~~y 106 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSYYLY 106 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchHHHH
Confidence 677777888999999999999999999999999999888 66666655444
No 259
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=74.55 E-value=14 Score=23.54 Aligned_cols=45 Identities=16% Similarity=0.182 Sum_probs=34.5
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 113 VPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 113 ~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
...+..+.+++.+.+.+|..+|.+....+.++...+..+....+.
T Consensus 22 ~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~ 66 (85)
T PF06779_consen 22 GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLL 66 (85)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 356777889999999999999999999888775555555554444
No 260
>COG3619 Predicted membrane protein [Function unknown]
Probab=72.93 E-value=40 Score=25.84 Aligned_cols=75 Identities=11% Similarity=0.016 Sum_probs=44.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhcccccchhhhhhhhC-C----CCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhch
Q psy3292 3 SGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVS-P----DSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGR 77 (213)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~----~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Gr 77 (213)
..+-+..+...++..+.+.+++.+...+......+. + .-+....+...........+...+|......+..|..|
T Consensus 5 ~~~~~l~l~~lLa~~aGfvDa~~f~~~gg~F~s~~TGN~v~~gi~l~~~~~~~a~~~~~pii~Fv~Gv~~~~~~~r~~~~ 84 (226)
T COG3619 5 QSSESLRLGLLLALVAGFVDAFGFLHLGGVFVSFMTGNLVLLGIELAEGDAALAVLLLLPILAFVLGVAAAELISRRATR 84 (226)
T ss_pred chhhhHHHHHHHHHHhhhHHHHHHHHhcCchhhheeccHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445667778888888899988877444433322222 0 00112234555556666667777776666666666664
No 261
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=70.83 E-value=11 Score=29.36 Aligned_cols=51 Identities=25% Similarity=0.310 Sum_probs=39.6
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccchhhhHHHHHH
Q psy3292 114 PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLL 168 (213)
Q Consensus 114 ~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~l~ 168 (213)
..++.+...+.....+|..+| ++.|.+.|++|.+.+..++++.++ +++..+
T Consensus 33 ~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~---~GY~~~ 83 (250)
T PF06813_consen 33 GYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGF---VGYGLL 83 (250)
T ss_pred CCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHH---HHHHHH
Confidence 556677778888888998876 778999999999888888888743 355554
No 262
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=66.22 E-value=30 Score=28.45 Aligned_cols=44 Identities=27% Similarity=0.243 Sum_probs=29.2
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 114 PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 114 ~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
...+.+.+...........+-....|.++|++|||..-+..++.
T Consensus 65 g~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cil 108 (354)
T PF05631_consen 65 GFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCIL 108 (354)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 34555566655555555555556678999999999876655554
No 263
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=66.12 E-value=17 Score=31.46 Aligned_cols=126 Identities=13% Similarity=0.129 Sum_probs=67.8
Q ss_pred HHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHH-HH--HHHhhhhhhhHHhhhhhchhHHHHH------HH
Q psy3292 15 ATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVAS-ME--FGCWAIPFFAGMLCDRIGRKWTLLS------TA 85 (213)
Q Consensus 15 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~-~~--~g~~ig~~~~g~l~d~~Grr~~~~~------~~ 85 (213)
..+-.+.+|.-.|......|.+.+ ....+.|.++.+...-+ +. +=.+=++++=+....|+||||+.++ +.
T Consensus 5 L~~LY~lQGiP~GL~~gsiPflL~-~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~ 83 (544)
T PF13000_consen 5 LVLLYFLQGIPLGLAFGSIPFLLQ-SMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGI 83 (544)
T ss_pred HHHHHHHcCcccccccccchhhhc-cccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHH
Confidence 334567788888877677788877 11157777777654321 11 1112233444455669999998654 33
Q ss_pred HHHHHHH-Hh----------hhc-------Cch------hHH--HHhcCCCCCC--------CCCcchhhHHHHHHHHHH
Q psy3292 86 TLSAFSV-GQ----------TFG-------WSS------PVL--AYLVSPDSPV--------PMSEDESSWVVASMEFGC 131 (213)
Q Consensus 86 ~~~~~~~-~~----------~~~-------~~~------~~l--~~~~~~~~~~--------~~~~~~~~~~~~~~~lg~ 131 (213)
.+..++. .. ... .+. +.+ +++...+.+. .++++..+...+..++|.
T Consensus 84 ~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~ 163 (544)
T PF13000_consen 84 LMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQ 163 (544)
T ss_pred HHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHh
Confidence 3334444 30 000 000 011 1122222222 345666788888888888
Q ss_pred HHHHHHHHHH
Q psy3292 132 WAIPFFAGML 141 (213)
Q Consensus 132 ~~g~~~~g~l 141 (213)
..|-+++..+
T Consensus 164 ~~Gyfls~tv 173 (544)
T PF13000_consen 164 TAGYFLSFTV 173 (544)
T ss_pred hhhHHHHHHH
Confidence 8888876444
No 264
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=65.34 E-value=24 Score=28.87 Aligned_cols=52 Identities=12% Similarity=0.055 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCc
Q psy3292 48 DESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWS 99 (213)
Q Consensus 48 ~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~ 99 (213)
....|.-...++|..++..+.+++-|++|....+.++.+.+.++. .....++
T Consensus 72 ~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~ 124 (372)
T PF00854_consen 72 SFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRK 124 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred hhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCc
Confidence 344677888889999999999999999999999999999998888 7776644
No 265
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=64.72 E-value=47 Score=28.23 Aligned_cols=55 Identities=11% Similarity=-0.103 Sum_probs=44.8
Q ss_pred hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHH
Q psy3292 31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLS 88 (213)
Q Consensus 31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~ 88 (213)
...-.|.. ..|.++...+.+-+.-.+....|.+..+++.+|+|..++=..+....
T Consensus 279 ~lmt~yl~---~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q 333 (432)
T PF06963_consen 279 GLMTAYLK---SQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQ 333 (432)
T ss_pred HHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 34444444 45999999999999999999999999999999999887766666543
No 266
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=57.82 E-value=26 Score=28.67 Aligned_cols=37 Identities=11% Similarity=0.166 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 121 SWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 121 ~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
.++....++|..++..+.+++.+++||...|.+..+.
T Consensus 75 ~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~ 111 (372)
T PF00854_consen 75 NWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIG 111 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHH
Confidence 5677778899999999999999999999999887766
No 267
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=56.61 E-value=36 Score=28.56 Aligned_cols=104 Identities=19% Similarity=0.046 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH---hcCCCC----------CCCCCcc
Q psy3292 53 VVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY---LVSPDS----------PVPMSED 118 (213)
Q Consensus 53 ~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~---~~~~~~----------~~~~~~~ 118 (213)
+.-+-.+-.++--+...++.+|+..+.-+..+..+..++. ..+++++.+.-+. +.+... ..+..+.
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~~y~~~ 143 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTHFYGKS 143 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHHhcCcc
Confidence 4444444555666777888888887666777778888888 8889888765333 111100 0122233
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHhcc--chhhhhhccc
Q psy3292 119 ESSWVVASMEFGCWAIPFFAGMLCDRIGR--KWTLLSTGML 157 (213)
Q Consensus 119 ~~~~~~~~~~lg~~~g~~~~g~l~~~~g~--~~~~~~~~~~ 157 (213)
..+...+..+.++.+|+..--.+.+ .|. |..+......
T Consensus 144 ~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~l 183 (402)
T PF02487_consen 144 SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVL 183 (402)
T ss_pred ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHH
Confidence 3344444455566666665544444 443 5555554433
No 268
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.01 E-value=56 Score=21.89 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhhhhhhHHhhhhh-chhHHHHHHHHHHHHHH
Q psy3292 50 SSWVVASMEFGCWAIPFFAGMLCDRI-GRKWTLLSTATLSAFSV 92 (213)
Q Consensus 50 ~~~~~s~~~~g~~ig~~~~g~l~d~~-Grr~~~~~~~~~~~~~~ 92 (213)
...-.++=+++..+-....|++.||| |-++.-++..++...+.
T Consensus 44 ~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~A 87 (116)
T COG5336 44 QAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGA 87 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34445555666666777889999996 45666666666555544
No 269
>KOG3098|consensus
Probab=54.89 E-value=91 Score=26.78 Aligned_cols=49 Identities=14% Similarity=0.036 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHhhh---hhchhHHHHHHHHHHHHHH-Hhhhc
Q psy3292 49 ESSWVVASMEFGCWAIPFFAGMLCD---RIGRKWTLLSTATLSAFSV-GQTFG 97 (213)
Q Consensus 49 ~~~~~~s~~~~g~~ig~~~~g~l~d---~~Grr~~~~~~~~~~~~~~-~~~~~ 97 (213)
..+.-.-...+|..+++.+.+.+.+ ++||++++.++..+..+.. +.-.+
T Consensus 280 ~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~ 332 (461)
T KOG3098|consen 280 LIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLS 332 (461)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhcc
Confidence 3344444555566666677777764 5888999999999988888 55444
No 270
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=54.52 E-value=4.1 Score=35.49 Aligned_cols=70 Identities=11% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHH-HHhhhhhhhHHhhhhhch--hHHHHHHHHHHHHH
Q psy3292 20 FSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEF-GCWAIPFFAGMLCDRIGR--KWTLLSTATLSAFS 91 (213)
Q Consensus 20 ~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~-g~~ig~~~~g~l~d~~Gr--r~~~~~~~~~~~~~ 91 (213)
..+.+...-.....|.|.| .+++.++++++.+.....+ +.++|.+++|++.+|+.- |+.+..+.+...++
T Consensus 315 ~~~~~~~~G~~tF~pKylE--~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~ 387 (539)
T PF03137_consen 315 VFESFIVSGFATFLPKYLE--SQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVS 387 (539)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHH
Confidence 3333334444455676665 4678899999998876666 788999999999998753 45444444443333
No 271
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=47.53 E-value=43 Score=22.29 Aligned_cols=51 Identities=16% Similarity=-0.029 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcC
Q psy3292 48 DESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGW 98 (213)
Q Consensus 48 ~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~ 98 (213)
+..+-.-+++.--..+.++++++..|+.-+-+.=.++..++.++. +..+.+
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 567788888888899999999999999988777778888888887 665543
No 272
>PRK02237 hypothetical protein; Provisional
Probab=45.64 E-value=65 Score=21.56 Aligned_cols=51 Identities=10% Similarity=-0.139 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcC
Q psy3292 48 DESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGW 98 (213)
Q Consensus 48 ~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~ 98 (213)
+..+-.-+++.-...+.++++++..|+.-.-+-=.++..++.++. +..+.+
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 447888889999999999999999999987777777888888887 665554
No 273
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=43.69 E-value=87 Score=26.46 Aligned_cols=62 Identities=15% Similarity=-0.156 Sum_probs=43.5
Q ss_pred CCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHH--HHHHH-HhhhcCchhHHHH
Q psy3292 44 PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATL--SAFSV-GQTFGWSSPVLAY 105 (213)
Q Consensus 44 ~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~--~~~~~-~~~~~~~~~~l~~ 105 (213)
+.++.-.|.+-++..+.+.++.+..|++..+..+..-+.++.+- ..... .+++++|.+..++
T Consensus 281 ~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~ 345 (412)
T PF01770_consen 281 DNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYA 345 (412)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 44566778899999999999999999997777775444433333 33334 6677777776654
No 274
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=42.77 E-value=85 Score=19.76 Aligned_cols=35 Identities=6% Similarity=-0.034 Sum_probs=19.4
Q ss_pred chhHHHHHHHHHHHHHHHHhhcccccchhhhhhhh
Q psy3292 3 SGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLV 37 (213)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 37 (213)
+++.|+.+.+..+.+.....-..-+.++.+..+|.
T Consensus 9 ~~~~kkFl~~l~~vfiia~~Vv~rAt~gGVi~qYn 43 (85)
T PF10749_consen 9 TKEGKKFLLALAIVFIIAATVVGRATIGGVIEQYN 43 (85)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 45556666555555544444445566666666553
No 275
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=42.30 E-value=2.2e+02 Score=24.30 Aligned_cols=107 Identities=15% Similarity=0.042 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhh------hcC-c-----hhH---HHH---------
Q psy3292 51 SWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQT------FGW-S-----SPV---LAY--------- 105 (213)
Q Consensus 51 ~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~------~~~-~-----~~~---l~~--------- 105 (213)
+...-.-.+..++.+...|.+.||..|.+++..+.+...++. ..+ +.. + .+. +.+
T Consensus 41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 120 (432)
T PF06963_consen 41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIE 120 (432)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHH
Confidence 333344455667788888999999999988777665543332 111 111 0 111 111
Q ss_pred ----------hcCCCCCCCC--Ccchh----hHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 ----------LVSPDSPVPM--SEDES----SWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 ----------~~~~~~~~~~--~~~~~----~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
...+....-. ++... +.++-+-.+.-.++|++.|.+.+..|.+....+....
T Consensus 121 ~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~ 188 (432)
T PF06963_consen 121 RLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGW 188 (432)
T ss_pred HHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHH
Confidence 0111111111 11111 3444456778899999999999988887766655555
No 276
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=41.60 E-value=86 Score=20.25 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=15.5
Q ss_pred HHHHHHHhhhhhhhHHhhhhhchh
Q psy3292 55 ASMEFGCWAIPFFAGMLCDRIGRK 78 (213)
Q Consensus 55 s~~~~g~~ig~~~~g~l~d~~Grr 78 (213)
-.......+-+++.|.+.||..||
T Consensus 82 ~~~~~~~l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 82 WITFAVFLVVALVTGYLADRYRRQ 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344455567788889999998765
No 277
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=41.57 E-value=1.5e+02 Score=22.11 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcc
Q psy3292 123 VVASMEFGCWAIPFFAGMLCDRIGR 147 (213)
Q Consensus 123 ~~~~~~lg~~~g~~~~g~l~~~~g~ 147 (213)
.....-++...|.++++.+.++.+.
T Consensus 167 ~~~~~i~~f~~Ga~~ga~l~~~~~~ 191 (209)
T PF06912_consen 167 RYLLIILSFFIGAILGALLYRRLGF 191 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455666777777777777774
No 278
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=41.21 E-value=81 Score=23.37 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=18.6
Q ss_pred HHHHHHHhhhhhhhHHhhhhhch
Q psy3292 55 ASMEFGCWAIPFFAGMLCDRIGR 77 (213)
Q Consensus 55 s~~~~g~~ig~~~~g~l~d~~Gr 77 (213)
.-|.+|..+++++.|.+.||.-+
T Consensus 89 gGyL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 89 GGYLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhc
Confidence 34567888899999999999875
No 279
>KOG2325|consensus
Probab=40.80 E-value=1.1e+02 Score=26.56 Aligned_cols=114 Identities=13% Similarity=-0.009 Sum_probs=70.3
Q ss_pred hhHHhhhhhchhHHHHHHHHHHHHHH--HhhhcCchhHHHHhcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy3292 67 FAGMLCDRIGRKWTLLSTATLSAFSV--GQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR 144 (213)
Q Consensus 67 ~~g~l~d~~Grr~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~ 144 (213)
......||--+.+.+.++.+...+.. .....++.+...-- .+........|++.+...+|.+++.++.|+-.++
T Consensus 22 ~~~~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~----lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k 97 (488)
T KOG2325|consen 22 SLSPLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQK----LDPTATATFFGLVIAASSLGHAIFSLIFGIWSNK 97 (488)
T ss_pred ccccccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhh----cCCCCCcchhhHHHHHHHHHHHhcchhhcccccc
Confidence 33445666667777776666655554 44444544433221 2233445567999999999999999999999888
Q ss_pred hcc-chhhhhhcccchhhhHHHHHH-HH------HHHHHHHHHHHHHhhcC
Q psy3292 145 IGR-KWTLLSTGMLCDRIGRKWTLL-ST------GMLCDRIGRKWTLLSTG 187 (213)
Q Consensus 145 ~g~-~~~~~~~~~~~~~~~~~~~l~-~~------~~~~~~es~~~~g~~~g 187 (213)
.+. |+.++.+.++++ ++-++= .. ...++..+|.+.|++.|
T Consensus 98 ~~~~k~Pli~s~ii~~---~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~ 145 (488)
T KOG2325|consen 98 TGSVKKPLIVSFLIAI---IGNLLYLALAYVPNGVKYLMLVARILTGVGVG 145 (488)
T ss_pred cCCcccCHHHHHHHHH---HHHHHHHHHHhcccchHHHHHHHHHHcCcCcc
Confidence 775 777777666633 232222 11 13333677888877766
No 280
>KOG3626|consensus
Probab=40.49 E-value=61 Score=29.58 Aligned_cols=65 Identities=11% Similarity=0.086 Sum_probs=43.1
Q ss_pred cccchhhhhhhhCCCCCCCCChhhHHHHHHHHHH-HHhhhhhhhHHhhhhhch--hHHHHHHHHHHHHHH
Q psy3292 26 FGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEF-GCWAIPFFAGMLCDRIGR--KWTLLSTATLSAFSV 92 (213)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~-g~~ig~~~~g~l~d~~Gr--r~~~~~~~~~~~~~~ 92 (213)
+.-....+|-|.| .+++.+++.+..+.+...+ +.++|.+++|++..|+-- |.......+...+..
T Consensus 408 ~~G~~tFlPKyLE--~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l 475 (735)
T KOG3626|consen 408 ITGYITFLPKYLE--TQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSL 475 (735)
T ss_pred HhhHHHhhHHHHH--HHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHH
Confidence 3333455676664 4678899999988865554 678889999999998753 555544444444433
No 281
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=37.93 E-value=1.5e+02 Score=21.19 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 129 FGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 129 lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
....+.+++.+.+.+++|.|+.+.++.+.
T Consensus 48 ~~~~~s~l~~P~iv~~lg~K~sm~lg~~~ 76 (156)
T PF05978_consen 48 GSFAISCLFAPSIVNKLGPKWSMILGSLG 76 (156)
T ss_pred HHHHHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 34455556677778999999999888776
No 282
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=35.70 E-value=89 Score=22.18 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=21.2
Q ss_pred HHHHHHHHhhhhhhhHHhhhhhchhH
Q psy3292 54 VASMEFGCWAIPFFAGMLCDRIGRKW 79 (213)
Q Consensus 54 ~s~~~~g~~ig~~~~g~l~d~~Grr~ 79 (213)
+.-|.+|..+.+.+.|.+.||..+++
T Consensus 59 TgGyl~gf~~~a~i~g~~~~~~~~~~ 84 (148)
T PF02632_consen 59 TGGYLLGFPLAALIIGLLAERLKRSR 84 (148)
T ss_pred CChHHHHHHHHHHHHHHHHHhccccc
Confidence 34567888999999999999988764
No 283
>KOG3097|consensus
Probab=30.75 E-value=1.3e+02 Score=24.87 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=40.1
Q ss_pred CChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH
Q psy3292 45 MSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV 92 (213)
Q Consensus 45 ~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~ 92 (213)
..-+..+....++.++..+.+.+.|.+..++||-.....+......-.
T Consensus 307 ~Gv~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l~li 354 (390)
T KOG3097|consen 307 LGVSRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHLLLI 354 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 445678889999999999999999999999999998887777655444
No 284
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=27.69 E-value=2.3e+02 Score=22.45 Aligned_cols=37 Identities=11% Similarity=0.024 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHH
Q psy3292 48 DESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLST 84 (213)
Q Consensus 48 ~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~ 84 (213)
.......-++..|..+|++..|+++...=+||..+..
T Consensus 141 ~~~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~ 177 (267)
T PF07672_consen 141 WIIPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHF 177 (267)
T ss_pred hhhHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHH
Confidence 3446667788889999999999999875555554443
No 285
>PRK03612 spermidine synthase; Provisional
Probab=27.31 E-value=3.2e+02 Score=23.90 Aligned_cols=42 Identities=21% Similarity=0.090 Sum_probs=31.7
Q ss_pred ChhhHHHHHHHHHHHHhhhhhhhHHhhh-hhchhHHHHHHHHH
Q psy3292 46 SEDESSWVVASMEFGCWAIPFFAGMLCD-RIGRKWTLLSTATL 87 (213)
Q Consensus 46 s~~~~~~~~s~~~~g~~ig~~~~g~l~d-~~Grr~~~~~~~~~ 87 (213)
.....+.+.++..+|+.+|++..+++.= .+|-..+.++...+
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l 185 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSL 185 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3466889999999999999999997665 79976555444333
No 286
>KOG0637|consensus
Probab=26.04 E-value=3e+02 Score=23.89 Aligned_cols=52 Identities=6% Similarity=-0.033 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHH
Q psy3292 52 WVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVL 103 (213)
Q Consensus 52 ~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l 103 (213)
|=..++.+-..+.+....++.||+|-|+.+..+...+.++. ..+...+....
T Consensus 336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~ 388 (498)
T KOG0637|consen 336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVV 388 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHH
Confidence 33445555667889999999999996555555555455555 55555444433
No 287
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=23.60 E-value=2.3e+02 Score=18.72 Aligned_cols=33 Identities=9% Similarity=0.022 Sum_probs=16.8
Q ss_pred HHhhhhhhhHHhhh-hhchhHHHHHHHHHHHHHH
Q psy3292 60 GCWAIPFFAGMLCD-RIGRKWTLLSTATLSAFSV 92 (213)
Q Consensus 60 g~~ig~~~~g~l~d-~~Grr~~~~~~~~~~~~~~ 92 (213)
...+.+.+.|...| ++|-++.+.+..++..+..
T Consensus 54 ~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~ 87 (100)
T TIGR02230 54 IPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVI 87 (100)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 33444555555555 5776655555544444333
No 288
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=23.07 E-value=3e+02 Score=20.17 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=18.9
Q ss_pred CCCChhhH--HHHHHHHHHHHhhhhhhhHHhhhhhch
Q psy3292 43 VPMSEDES--SWVVASMEFGCWAIPFFAGMLCDRIGR 77 (213)
Q Consensus 43 ~~~s~~~~--~~~~s~~~~g~~ig~~~~g~l~d~~Gr 77 (213)
+++++... ....++..+|.++|+.++..+=.-..|
T Consensus 72 ~GlDP~~~~g~~t~a~g~lG~L~GP~~G~~vf~l~~r 108 (173)
T PF08566_consen 72 MGLDPFMVYGLATLACGALGWLVGPSLGNQVFRLLNR 108 (173)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhH
Confidence 46776543 334445556666666666555443333
No 289
>KOG3574|consensus
Probab=21.36 E-value=2e+02 Score=24.56 Aligned_cols=46 Identities=13% Similarity=-0.046 Sum_probs=37.3
Q ss_pred hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhh
Q psy3292 106 LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTL 151 (213)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~ 151 (213)
+-+...|..+..+......+.-++|...-..+..+++|.++++...
T Consensus 393 f~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv~~C~ 438 (510)
T KOG3574|consen 393 FHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTVKQCV 438 (510)
T ss_pred HHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCceeecc
Confidence 4455677788888889999999999999999999999988765443
No 290
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=21.30 E-value=5.4e+02 Score=22.24 Aligned_cols=34 Identities=6% Similarity=-0.118 Sum_probs=25.7
Q ss_pred CCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhch
Q psy3292 44 PMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGR 77 (213)
Q Consensus 44 ~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Gr 77 (213)
++.+-.+.|..-++.+|.+++.++..+...|.|.
T Consensus 17 ~iG~~~I~~YGl~ialGil~a~~l~~r~~kr~g~ 50 (460)
T PRK13108 17 YLGPLPVRAYAVCVITGIIVALLIGDRRLTARGG 50 (460)
T ss_pred EeccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3455667777888888888888888888887764
No 291
>PRK10621 hypothetical protein; Provisional
Probab=21.12 E-value=4e+02 Score=20.74 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhHhccc
Q psy3292 129 FGCWAIPFFAGMLCDRIGRK 148 (213)
Q Consensus 129 lg~~~g~~~~g~l~~~~g~~ 148 (213)
.|..+|..++..+.++.+.|
T Consensus 214 ~g~~~G~~lG~~l~~~~~~~ 233 (266)
T PRK10621 214 VGQFLGARLGARLVLSKGQK 233 (266)
T ss_pred HHHHHHHHHHHHHHHHcCch
Confidence 34455555555555555543
No 292
>KOG1484|consensus
Probab=20.75 E-value=2.5e+02 Score=23.13 Aligned_cols=65 Identities=15% Similarity=0.017 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhHhccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhhhhc
Q psy3292 132 WAIPFFAGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRKKHKSSLVRL 202 (213)
Q Consensus 132 ~~g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g~~~g~~~~~~~a~~~l~~~ 202 (213)
.+|-++..++.+.+||-+.=-++++. ..+..++.+.+++ .+|-..+ +.+--...+.+..+++++.
T Consensus 221 SvGviist~Li~~~gw~~aDpicsll---IailIf~sv~PL~--k~s~~iL-Lq~tPp~~~~~l~~cl~~I 285 (354)
T KOG1484|consen 221 SVGVIISTLLIKLFGWMIADPICSLL---IAILIFLSVLPLL--KYSGKIL-LQRTPPHLENSLKQCLRQI 285 (354)
T ss_pred chHHHHHHHHHHhcCccchhHHHHHH---HHHHHHHHHHHHH--HHHHHHH-HhcCChhhhhHHHHHHHHh
Confidence 35777888888889997766554444 2122222233444 6777666 6554222333444555553
No 293
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=20.71 E-value=5.7e+02 Score=22.27 Aligned_cols=88 Identities=11% Similarity=-0.012 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHH
Q psy3292 3 SGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLL 82 (213)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~ 82 (213)
+++.-..+++.+++-+....-.+..|-+.+...+.+ +...+... |-..+...+...+..++.+.+.+|+|-+.+.+
T Consensus 278 kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~---~~~ysafm-G~~~~~tGivtii~~~l~~~iir~~GW~~~Al 353 (491)
T PF03219_consen 278 KSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPD---PNDYSAFM-GKFSSWTGIVTIIMMFLSSNIIRRFGWRTAAL 353 (491)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---chHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHHHHHH-Hh
Q psy3292 83 STATLSAFSV-GQ 94 (213)
Q Consensus 83 ~~~~~~~~~~-~~ 94 (213)
+.=++..++. ..
T Consensus 354 itPiv~lit~~~F 366 (491)
T PF03219_consen 354 ITPIVILITGLLF 366 (491)
T ss_pred HhHHHHHHHHHHH
Done!