Query psy3292
Match_columns 213
No_of_seqs 158 out of 1852
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 21:17:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3292.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3292hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.9 1.1E-21 3.7E-26 163.8 9.8 192 3-205 5-246 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.6 2.5E-15 8.5E-20 123.7 11.8 149 6-158 24-196 (451)
3 3o7q_A L-fucose-proton symport 99.6 4.1E-16 1.4E-20 128.0 6.4 136 8-146 24-182 (438)
4 2gfp_A EMRD, multidrug resista 99.5 2.4E-15 8E-20 121.4 3.1 142 13-157 3-163 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.4 1.5E-12 5.1E-17 108.5 12.6 116 42-157 48-185 (491)
6 2xut_A Proton/peptide symporte 99.3 2.2E-11 7.5E-16 102.3 10.4 121 34-157 37-187 (524)
7 1pw4_A Glycerol-3-phosphate tr 99.0 2.5E-08 8.7E-13 81.7 15.4 128 28-157 270-422 (451)
8 3o7q_A L-fucose-proton symport 98.8 4.4E-08 1.5E-12 80.0 13.0 121 31-155 279-419 (438)
9 2cfq_A Lactose permease; trans 98.7 1.8E-08 6E-13 82.5 6.4 111 47-157 258-388 (417)
10 2cfq_A Lactose permease; trans 98.7 9.8E-09 3.3E-13 84.0 3.3 128 27-158 24-177 (417)
11 4gc0_A D-xylose-proton symport 98.4 9.7E-07 3.3E-11 73.2 8.8 139 32-179 299-467 (491)
12 4aps_A DI-OR tripeptide H+ sym 98.1 3.1E-06 1E-10 70.2 6.1 114 43-157 314-460 (491)
13 2gfp_A EMRD, multidrug resista 97.4 1.1E-05 3.7E-10 64.5 -1.8 118 31-153 220-361 (375)
14 2xut_A Proton/peptide symporte 96.0 0.0053 1.8E-07 51.0 4.2 96 49-144 336-467 (524)
15 2g9p_A Antimicrobial peptide l 58.4 8.5 0.00029 17.0 2.0 14 67-80 2-15 (26)
16 4dve_A Biotin transporter BIOY 25.3 86 0.003 22.5 4.0 25 54-78 99-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.86 E-value=1.1e-21 Score=163.82 Aligned_cols=192 Identities=17% Similarity=0.211 Sum_probs=138.6
Q ss_pred chhHHHHHHHHHHHHHHHHhhcccccchhhhhhhhC-----CCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhch
Q psy3292 3 SGTTRQILAGMSATLSAFSVGQTFGWSSPVLAYLVS-----PDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGR 77 (213)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Gr 77 (213)
.++++.+.+++.++++.+.+|||.++++..+|.+.+ .+.+.+.++.+.+++.+++.+|..+|+++.|+++||+||
T Consensus 5 ~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GR 84 (491)
T 4gc0_A 5 YNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGR 84 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCH
T ss_pred cChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 446678888999999999999999999998887765 011113345678899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHH-Hhhh------------------cCchhHHHH------------------hcCCCCCCCCCcchh
Q psy3292 78 KWTLLSTATLSAFSV-GQTF------------------GWSSPVLAY------------------LVSPDSPVPMSEDES 120 (213)
Q Consensus 78 r~~~~~~~~~~~~~~-~~~~------------------~~~~~~l~~------------------~~~~~~~~~~~~~~~ 120 (213)
|++++++.+++.++. ..++ ++|++++.+ ...+..|...+....
T Consensus 85 k~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~ 164 (491)
T 4gc0_A 85 RDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLV 164 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhH
Confidence 999999999999998 8774 667777665 344555544444444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHh--------ccchhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCccccc
Q psy3292 121 SWVVASMEFGCWAIPFFAGMLCDRI--------GRKWTLLSTGMLCDRIGRKWTLLSTGMLCDRIGRKWTLLSTGMLCDR 192 (213)
Q Consensus 121 ~~~~~~~~lg~~~g~~~~g~l~~~~--------g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~es~~~~g~~~g~~~~~ 192 (213)
+........|...+..++....+.. +||..+....++. ++.....++.||||+|+ ..++ ++
T Consensus 165 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~peSp~~L-~~~~---~~ 233 (491)
T 4gc0_A 165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPA-------LLFLMLLYTVPESPRWL-MSRG---KQ 233 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHH-------HHHHHHGGGSCCCHHHH-HHTT---CH
T ss_pred HhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhh-------hhhhhhhhcCCCChHHH-HHcC---ch
Confidence 5555555566666666655554432 3444444444442 22233445569999999 9999 89
Q ss_pred ccchhhhhhcccc
Q psy3292 193 KKHKSSLVRLEGS 205 (213)
Q Consensus 193 ~~a~~~l~~~~~~ 205 (213)
|++++.+++.++.
T Consensus 234 ~~a~~~l~~~~~~ 246 (491)
T 4gc0_A 234 EQAEGILRKIMGN 246 (491)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHhHHHhcCC
Confidence 9999999887654
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.62 E-value=2.5e-15 Score=123.70 Aligned_cols=149 Identities=12% Similarity=-0.013 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHH
Q psy3292 6 TRQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTA 85 (213)
Q Consensus 6 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~ 85 (213)
++++.......++.+..+++.+..++..|.+.+ ++ .++.+.+++.+++.++..+++++.|+++||+|||+++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 99 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE---QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTS---ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence 445667777888888899999999999999998 88 99999999999999999999999999999999999999999
Q ss_pred HHHHHHH-Hhhh----cCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q psy3292 86 TLSAFSV-GQTF----GWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLC 142 (213)
Q Consensus 86 ~~~~~~~-~~~~----~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~ 142 (213)
++..++. ..++ +++++.+.+ ...+..|...+....+.......+|..+|+.+++++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 179 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 8888 888877665 2233334333444456777778899999999999999
Q ss_pred hHhc-cchhhhhhcccc
Q psy3292 143 DRIG-RKWTLLSTGMLC 158 (213)
Q Consensus 143 ~~~g-~~~~~~~~~~~~ 158 (213)
+..| ||+.+++.++++
T Consensus 180 ~~~g~w~~~f~~~~~~~ 196 (451)
T 1pw4_A 180 AWFNDWHAALYMPAFCA 196 (451)
T ss_dssp HHTCCSTTCTHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 9999 999998877663
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.62 E-value=4.1e-16 Score=128.02 Aligned_cols=136 Identities=14% Similarity=0.123 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHH
Q psy3292 8 QILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATL 87 (213)
Q Consensus 8 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~ 87 (213)
.+.......+..+..+++.+..++..|.+.+ +++.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 3445556667778888888899999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHHH-Hh---hhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH-hH
Q psy3292 88 SAFSV-GQ---TFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLC-DR 144 (213)
Q Consensus 88 ~~~~~-~~---~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~-~~ 144 (213)
..++. .. .++++++.+.+ ...+..|...+....+.......+|..+|+.+++.+. +.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999 88 88899887766 2334445445555567888889999999999999998 55
Q ss_pred hc
Q psy3292 145 IG 146 (213)
Q Consensus 145 ~g 146 (213)
.+
T Consensus 181 ~~ 182 (438)
T 3o7q_A 181 VP 182 (438)
T ss_dssp SC
T ss_pred cc
Confidence 44
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.53 E-value=2.4e-15 Score=121.35 Aligned_cols=142 Identities=15% Similarity=0.091 Sum_probs=119.4
Q ss_pred HHHHHHHHHhhcccccchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH
Q psy3292 13 MSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV 92 (213)
Q Consensus 13 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~ 92 (213)
....+..+..+++.+...+..|.+.+ +++.++++.+++.+.+.++..+++++.|+++||+|||+.+..+..+..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMAR---DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 34455666777788888899999998 899999999999999999999999999999999999999999999999999
Q ss_pred -HhhhcCchhHHHH------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhh
Q psy3292 93 -GQTFGWSSPVLAY------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLS 153 (213)
Q Consensus 93 -~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~ 153 (213)
...++++.+.+.+ ...+..|...+....+.......+|..+++.+++++.+..|||+.+++
T Consensus 80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 8888888877655 122223344555667888888999999999999999999999999887
Q ss_pred hccc
Q psy3292 154 TGML 157 (213)
Q Consensus 154 ~~~~ 157 (213)
.++.
T Consensus 160 ~~~~ 163 (375)
T 2gfp_A 160 LLVL 163 (375)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.42 E-value=1.5e-12 Score=108.49 Aligned_cols=116 Identities=14% Similarity=0.160 Sum_probs=96.7
Q ss_pred CCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhh-hchhHHHHHHHHHHHHHH-HhhhcCchhHHHH--------------
Q psy3292 42 PVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR-IGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY-------------- 105 (213)
Q Consensus 42 ~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~-------------- 105 (213)
|++.++.+.+++.+.+.++..+++++.|+++|| +|||+++..+.++..++. ..++++|.+.+.+
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence 589999999999999999999999999999999 899999999999999999 9999998887765
Q ss_pred ----hcCCCCCCCC--CcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 ----LVSPDSPVPM--SEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 ----~~~~~~~~~~--~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
...+..|... +....+......++|..+|+.+++.+.+..|||+.+++.++.
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~ 185 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIG 185 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 2222333333 222345566778899999999999999999999999886555
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.26 E-value=2.2e-11 Score=102.28 Aligned_cols=121 Identities=15% Similarity=0.182 Sum_probs=97.0
Q ss_pred hhhhCCCCCCC------CChhhHHHHHHHHHHHHhhhhhhhHHhhhhh-chhHHHHHHHHHHHHHH-HhhhcC-chhHHH
Q psy3292 34 AYLVSPDSPVP------MSEDESSWVVASMEFGCWAIPFFAGMLCDRI-GRKWTLLSTATLSAFSV-GQTFGW-SSPVLA 104 (213)
Q Consensus 34 ~~~~~~~~~~~------~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~-Grr~~~~~~~~~~~~~~-~~~~~~-~~~~l~ 104 (213)
+.+.+ +++ .++.+.+++.+.+.++..+++++.|+++||+ |||+++..+.++..++. ...+++ +.+.+.
T Consensus 37 ~~l~~---~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (524)
T 2xut_A 37 PFLMT---ALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFY 113 (524)
T ss_dssp HHHHH---SCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHH---HhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 44555 566 8999999999999999999999999999999 99999999999999999 888888 877665
Q ss_pred H------------------hcCCCCCCCCCcchhhH---HHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 105 Y------------------LVSPDSPVPMSEDESSW---VVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 105 ~------------------~~~~~~~~~~~~~~~~~---~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
+ ...+..|...+....+. .....++|..+|+.+++++.+..|||+.+++.+++
T Consensus 114 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~ 187 (524)
T 2xut_A 114 TGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVL 187 (524)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 4 22233343333322333 66778899999999999999999999998876665
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.96 E-value=2.5e-08 Score=81.67 Aligned_cols=128 Identities=12% Similarity=0.008 Sum_probs=95.6
Q ss_pred cchhhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhh--chhHHHHHHHHHHH-HHH-HhhhcC--chh
Q psy3292 28 WSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI--GRKWTLLSTATLSA-FSV-GQTFGW--SSP 101 (213)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~--Grr~~~~~~~~~~~-~~~-~~~~~~--~~~ 101 (213)
......|.+.+ +.++.++.+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++. ...+.+ +.+
T Consensus 270 ~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (451)
T 1pw4_A 270 GILDWSPTYLK--EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPT 347 (451)
T ss_dssp HHHHHHHHHBT--TBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHH
T ss_pred HHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHH
Confidence 34455676665 13789999999999999999999999999999999 99999888877766 666 655553 333
Q ss_pred HHHH------------------hcCCCCCCCCCcchhhHHHHHHHH-HHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 102 VLAY------------------LVSPDSPVPMSEDESSWVVASMEF-GCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 102 ~l~~------------------~~~~~~~~~~~~~~~~~~~~~~~l-g~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
.... ...+..|...+....+.......+ |..+++.+.|++.|..|++..+++.++.
T Consensus 348 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 422 (451)
T 1pw4_A 348 VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG 422 (451)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3222 223334444445555777777888 9999999999999999998888776655
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.85 E-value=4.4e-08 Score=80.02 Aligned_cols=121 Identities=15% Similarity=0.040 Sum_probs=89.0
Q ss_pred hhhhhh-hCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH---
Q psy3292 31 PVLAYL-VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY--- 105 (213)
Q Consensus 31 ~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~--- 105 (213)
...|.+ .+ +.++.++.+.++..+...++..++.++.|+++||+|||+.+..+.++..++. ...+.++......
T Consensus 279 ~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (438)
T 3o7q_A 279 SYLIRYAVE--EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTL 356 (438)
T ss_dssp HHHHHHHHH--HSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHhhh--ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 444554 43 0458899999999999999999999999999999999999999999888888 7777776554322
Q ss_pred --------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhc-cchhhhhhc
Q psy3292 106 --------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG-RKWTLLSTG 155 (213)
Q Consensus 106 --------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g-~~~~~~~~~ 155 (213)
...+..|.. +....+.. ....+|..+++.+.|++.|..| ++..+.+..
T Consensus 357 ~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 419 (438)
T 3o7q_A 357 CSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFI-VMTIIGGGIVTPVMGFVSDAAGNIPTAELIPA 419 (438)
T ss_dssp HHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHH-HHTTHHHHHHHHHHHHHHHHHTSSGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccc-ccchhhHH-HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 112222322 22222333 2556899999999999999999 888877543
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.71 E-value=1.8e-08 Score=82.47 Aligned_cols=111 Identities=22% Similarity=0.266 Sum_probs=75.4
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-HhhhcCchhHHHH------------------hc
Q psy3292 47 EDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFGWSSPVLAY------------------LV 107 (213)
Q Consensus 47 ~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~~~~~~l~~------------------~~ 107 (213)
....+...+...++..++.++.|+++||+|||+.+..+..+..++. ...+.++.+.+.+ ..
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888889999999999999999999998888888777 7777666554432 01
Q ss_pred CCCCCCCCCcchhhH-HHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 108 SPDSPVPMSEDESSW-VVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 108 ~~~~~~~~~~~~~~~-~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
.+..|...+....+. ......+|..+||.+.|++.|..|++..+...+.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~ 388 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLV 388 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHH
Confidence 111111111111222 13344688899999999999988877766555444
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.66 E-value=9.8e-09 Score=84.01 Aligned_cols=128 Identities=13% Similarity=0.035 Sum_probs=81.5
Q ss_pred ccchhhhhhh-hCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH----HhhhcCc--
Q psy3292 27 GWSSPVLAYL-VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV----GQTFGWS-- 99 (213)
Q Consensus 27 ~~~~~~~~~~-~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~----~~~~~~~-- 99 (213)
+...+..|.+ .+ +++.++.+.+++.+.+.++..+++++.|+++||+|||++++++..+..+.. ...+.+.
T Consensus 24 ~~~~~~~~~~l~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (417)
T 2cfq_A 24 GAYFPFFPIWLHD---INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQ 100 (417)
T ss_dssp HHHTTTHHHHHHT---TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334566665 44 578999999999999999999999999999999999999988877654321 1112111
Q ss_pred --hhHHHHhcCCC--------C---CCCCCcc--h----hhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhcccc
Q psy3292 100 --SPVLAYLVSPD--------S---PVPMSED--E----SSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLC 158 (213)
Q Consensus 100 --~~~l~~~~~~~--------~---~~~~~~~--~----~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~~ 158 (213)
........... . +.+..+. . .+.......+|..+++.+++++.+ .+|+..+++..++.
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 101 YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 11111100000 0 0011110 1 123333457788899999999887 58999888776663
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.40 E-value=9.7e-07 Score=73.18 Aligned_cols=139 Identities=13% Similarity=-0.005 Sum_probs=87.6
Q ss_pred hhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHHHHHHH-Hhhhc-----CchhHHHH
Q psy3292 32 VLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV-GQTFG-----WSSPVLAY 105 (213)
Q Consensus 32 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~~~~-~~~~~-----~~~~~l~~ 105 (213)
..|.+.+ ..+.+............+...++.++.+++.||+|||+.++.+.....++. ..+.. ++...+..
T Consensus 299 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 375 (491)
T 4gc0_A 299 YAPEVFK---TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLS 375 (491)
T ss_dssp HHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cchHHHH---hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 3455555 556677777777788888899999999999999999999988877766665 43321 11111111
Q ss_pred ------------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH------hccchhhhhhcccchhh
Q psy3292 106 ------------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR------IGRKWTLLSTGMLCDRI 161 (213)
Q Consensus 106 ------------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~------~g~~~~~~~~~~~~~~~ 161 (213)
...+..|...+....+...+...++..+++.+.+.+.+. .+....+++.+.+++
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~-- 453 (491)
T 4gc0_A 376 MLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV-- 453 (491)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHH--
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH--
Confidence 234556666666667777777788888877776665432 344455554444322
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy3292 162 GRKWTLLSTGMLCDRIGR 179 (213)
Q Consensus 162 ~~~~~l~~~~~~~~~es~ 179 (213)
+...+..+++||++
T Consensus 454 ----~~~i~~~~~~PETk 467 (491)
T 4gc0_A 454 ----LAALFMWKFVPETK 467 (491)
T ss_dssp ----HHHHHHHHHCCCCT
T ss_pred ----HHHHHHHheecCCC
Confidence 11122344458876
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.14 E-value=3.1e-06 Score=70.20 Aligned_cols=114 Identities=12% Similarity=-0.036 Sum_probs=75.4
Q ss_pred CCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHH-----HHHHHHHHHH-HhhhcC---------chhHHHH--
Q psy3292 43 VPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLL-----STATLSAFSV-GQTFGW---------SSPVLAY-- 105 (213)
Q Consensus 43 ~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~-----~~~~~~~~~~-~~~~~~---------~~~~l~~-- 105 (213)
.+.+..+.++..+...++..++.++.+++.||+|||+... .+..+..++. ...+.. +.+....
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
T 4aps_A 314 VDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSW 393 (491)
T ss_dssp CCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHH
T ss_pred hccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHH
Confidence 3444466777888888999999999999999999986654 6666666666 554421 3222222
Q ss_pred ----------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhhhccc
Q psy3292 106 ----------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157 (213)
Q Consensus 106 ----------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~~~~~ 157 (213)
...+..|...+....+.......+|..+++.+.+.+.+. +..+.+...+..
T Consensus 394 ~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~ 460 (491)
T 4aps_A 394 ALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLG 460 (491)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHH
Confidence 223344556666677888888889999999888877654 555555544444
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.41 E-value=1.1e-05 Score=64.49 Aligned_cols=118 Identities=13% Similarity=0.020 Sum_probs=69.7
Q ss_pred hhhhhhhCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhHHhhhhhchhHHHHHHHHH-HHHHH-Hhhhc----CchhHHH
Q psy3292 31 PVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATL-SAFSV-GQTFG----WSSPVLA 104 (213)
Q Consensus 31 ~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~d~~Grr~~~~~~~~~-~~~~~-~~~~~----~~~~~l~ 104 (213)
...|.+.+ +.++.++.+.+.+.+...++..++.++.+++.||+||+. ..+... ...+. ..... ++.+.+.
T Consensus 220 ~~~~~~~~--~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (375)
T 2gfp_A 220 ACSGVLMG--AVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLL 295 (375)
T ss_dssp HHCSCSSH--HHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHH
Confidence 34454443 025778899999999999999999999999999999832 222222 22222 22211 2333222
Q ss_pred H----------h--------cCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhHhccchhhhh
Q psy3292 105 Y----------L--------VSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLS 153 (213)
Q Consensus 105 ~----------~--------~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g~~~~~~~ 153 (213)
+ . ..+..| ..+....+.......+|..+++.+.+.+.+..+++..+..
T Consensus 296 ~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 296 VPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 2 1 111111 1122223445556677888888888888887777666654
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=96.00 E-value=0.0053 Score=51.04 Aligned_cols=96 Identities=14% Similarity=0.039 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHhhhhhhhHHhh----hhhchh----HHHHHHHHHHHHHH-Hhhhc---------CchhHHHH-----
Q psy3292 49 ESSWVVASMEFGCWAIPFFAGMLC----DRIGRK----WTLLSTATLSAFSV-GQTFG---------WSSPVLAY----- 105 (213)
Q Consensus 49 ~~~~~~s~~~~g~~ig~~~~g~l~----d~~Grr----~~~~~~~~~~~~~~-~~~~~---------~~~~~l~~----- 105 (213)
..+.+.+...++..++..+.+.+. ||.|+| +.+..+..+..++. ...+. .+.+.+..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 345555555566666666666654 555432 45566666666666 55543 23332222
Q ss_pred -------------hcCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy3292 106 -------------LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDR 144 (213)
Q Consensus 106 -------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~g~l~~~ 144 (213)
...+..|...+....+.......+|..+|+.+.+.+.+.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 122344556666777888888899999999999988874
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=58.43 E-value=8.5 Score=17.02 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=11.3
Q ss_pred hhHHhhhhhchhHH
Q psy3292 67 FAGMLCDRIGRKWT 80 (213)
Q Consensus 67 ~~g~l~d~~Grr~~ 80 (213)
++|.+..+||||-.
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46788999999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=25.26 E-value=86 Score=22.45 Aligned_cols=25 Identities=12% Similarity=0.323 Sum_probs=19.1
Q ss_pred HHHHHHHHhhhhhhhHHhhhhhchh
Q psy3292 54 VASMEFGCWAIPFFAGMLCDRIGRK 78 (213)
Q Consensus 54 ~s~~~~g~~ig~~~~g~l~d~~Grr 78 (213)
+.-|.+|..+++++.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3456678888899999999987643
Done!