RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3292
(213 letters)
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 36.5 bits (85), Expect = 0.007
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 14/80 (17%)
Query: 26 FGWSSPVLAYLVSPDSPVPM------------SEDESSWVVASMEFGCWAIPFFAGMLCD 73
FG+ + V+ ++ S S +V+ GC FAG L D
Sbjct: 12 FGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGD 71
Query: 74 RIGRKWTLLSTATLSAFSVG 93
R GRK +LL L F +G
Sbjct: 72 RFGRKKSLLIGNVL--FVIG 89
Score = 35.7 bits (83), Expect = 0.012
Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 84 TATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCD 143
T + AF F L S S +V+ GC FAG L D
Sbjct: 16 TGVIGAFLTLIKFFKRFGALTS----IGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGD 71
Query: 144 RIGRKWTLLSTGMLC 158
R GRK +LL +L
Sbjct: 72 RFGRKKSLLIGNVLF 86
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 33.9 bits (78), Expect = 0.048
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 17 LSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG 76
L+AF G P L ++ D + +S E ++ + G AG L DR G
Sbjct: 3 LAAFLAGLGRSLLGPALPLYLAED--LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 77 RKWTLLSTATLSAFSVGQTFGWSS 100
R+ LL L A + SS
Sbjct: 61 RRRVLLIGLLLFALGLLLLLFASS 84
Score = 30.5 bits (69), Expect = 0.57
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 87 LSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG 146
L+AF G P L ++ D + +S E ++ + G AG L DR G
Sbjct: 3 LAAFLAGLGRSLLGPALPLYLAED--LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 147 RKWTLL 152
R+ LL
Sbjct: 61 RRRVLL 66
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 33.5 bits (77), Expect = 0.076
Identities = 29/116 (25%), Positives = 42/116 (36%), Gaps = 15/116 (12%)
Query: 4 GTTRQILAGMSATLSAFS--VGQTFGWSSPVLAYLVSPDS-----PVPMSEDESS----W 52
A LS + G FG+ + V+ ++ + S+ SS
Sbjct: 16 PAGLGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGL 75
Query: 53 VVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATL----SAFSVGQTFGWSSPVLA 104
VV+ G + FAG L DR GRK +LL A L + F S +L
Sbjct: 76 VVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLI 131
Score = 27.3 bits (61), Expect = 8.0
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 93 GQTFGWSSPVLAYLVSPDS-----PVPMSEDESS----WVVASMEFGCWAIPFFAGMLCD 143
G FG+ + V+ ++ + S+ SS VV+ G + FAG L D
Sbjct: 37 GLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSD 96
Query: 144 RIGRKWTLLSTGML 157
R GRK +LL +L
Sbjct: 97 RFGRKKSLLIIALL 110
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 33.1 bits (76), Expect = 0.094
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 45 MSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLL-STATLSAFSVGQTFGWSSPVL 103
+S ++ +V++ G AG L DR GR+ LL + S+ F S +L
Sbjct: 31 LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLL 90
Query: 104 A 104
Sbjct: 91 L 91
Score = 31.9 bits (73), Expect = 0.22
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Query: 59 FGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSED 118
F AI L + LL L+ +FG+ + + + +S
Sbjct: 156 FLILAILGLLLALLLLFLLRLLLL----LALAFFLLSFGYYGLLTYLPLYLQEVLGLSAA 211
Query: 119 ESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157
E+ +++ G G+L DR+GR+ LL G+L
Sbjct: 212 EAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLL 250
Score = 27.7 bits (62), Expect = 5.0
Identities = 32/163 (19%), Positives = 52/163 (31%), Gaps = 20/163 (12%)
Query: 16 TLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRI 75
L+ +FG+ + + + +S E+ +++ G G+L DR+
Sbjct: 179 LLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL 238
Query: 76 GRKWTLLSTATL--------------------SAFSVGQTFGWSSPVLAYLVSPDSPVPM 115
GR+ LL L + +G G++ P L L S +P
Sbjct: 239 GRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA 298
Query: 116 SEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLC 158
S G P AG+L D G L L
Sbjct: 299 RGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALA 341
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 32.7 bits (75), Expect = 0.11
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 51 SWVVASMEFGCWAIPFFAGMLCDRIGRKWTLL-STATLSAFSVGQTFGWSSPVLAYL 106
S + M FG F G L DRIGR+ LL S S F++ + L L
Sbjct: 59 SAGLIGMAFGA----LFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLIL 111
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 32.6 bits (75), Expect = 0.13
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 66 FFAGMLCDRIGRKWTLL-STATLSAFSVGQTFGWSSPVL 103
G L DRIGRK L+ S A FS+ W P L
Sbjct: 68 LLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSL 106
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 31.4 bits (72), Expect = 0.28
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 69 GMLCDRIGRKWTLLSTATLSAFSVGQTFG--WSSPVLAYLVS 108
G L DR GRK LL A LS F++G + G W LV
Sbjct: 62 GPLSDRYGRKPVLL--AGLSLFALG-SLGMLWVESAAQLLVL 100
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 30.7 bits (70), Expect = 0.51
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 44 PMSEDESSWV-VASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSV 92
+S + + V + S+ IP G L DRIGR+ L+ L+A
Sbjct: 251 GLSANSALLVLMLSLILFFITIPLS-GALSDRIGRRPVLIIFTVLAALLA 299
Score = 30.7 bits (70), Expect = 0.51
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 114 PMSEDESSWV-VASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGML 157
+S + + V + S+ IP G L DRIGR+ L+ +L
Sbjct: 251 GLSANSALLVLMLSLILFFITIPLS-GALSDRIGRRPVLIIFTVL 294
Score = 28.4 bits (64), Expect = 2.6
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 19/86 (22%)
Query: 34 AYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFA--------GMLCDRIGRKWTLLSTA 85
A LV P S D ++A+ F +A F A G DRIGRK TL+ T
Sbjct: 16 AVLVFHTF-FPPSGDPLVALLAT--FATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITL 72
Query: 86 TLSAFS---VG-----QTFGWSSPVL 103
+ +G T G +P+L
Sbjct: 73 LMMGIGTLLIGLLPSYATIGIWAPIL 98
>gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional.
Length = 434
Score = 28.8 bits (65), Expect = 2.4
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 69 GMLCDRIGRKWTLLSTATLSAFSVGQTFGWSSPVLAYLVS 108
G L DRIGR+ L++ L+ + + P L++LV+
Sbjct: 295 GALSDRIGRRPVLIAFTVLAILT-------AYPALSWLVA 327
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 28.4 bits (64), Expect = 3.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 67 FAGMLCDRIGRKWTLLSTATL 87
FAG + DR GRK + A L
Sbjct: 57 FAGKIADRSGRKPVAIPGAAL 77
Score = 27.7 bits (62), Expect = 5.6
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 137 FAGMLCDRIGRKWTLLSTGML 157
FAG + DR GRK + L
Sbjct: 57 FAGKIADRSGRKPVAIPGAAL 77
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 28.0 bits (62), Expect = 4.1
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 36 LVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAF 90
L S + + + + + + G FF G L D++GRK LL +++ F
Sbjct: 190 LPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGF 244
>gnl|CDD|221945 pfam13158, DUF3993, Protein of unknown function (DUF3993). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 160 amino acids in length.
Length = 122
Score = 26.7 bits (59), Expect = 5.6
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 46 SEDESSWVVASMEFGCWAIPFFA 68
E++ W+ +FG + IPFF+
Sbjct: 79 FEEKQGWIFYGTDFGEYYIPFFS 101
Score = 26.7 bits (59), Expect = 5.6
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 116 SEDESSWVVASMEFGCWAIPFFA 138
E++ W+ +FG + IPFF+
Sbjct: 79 FEEKQGWIFYGTDFGEYYIPFFS 101
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
Provisional.
Length = 995
Score = 27.3 bits (61), Expect = 6.8
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 28 WSSPVLAYLVSPDSPVPMSEDESSWVVA 55
W + AY V P DE WVVA
Sbjct: 453 WGHRIPAYRVISKGPETDPSDEEPWVVA 480
Score = 27.3 bits (61), Expect = 6.8
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 98 WSSPVLAYLVSPDSPVPMSEDESSWVVA 125
W + AY V P DE WVVA
Sbjct: 453 WGHRIPAYRVISKGPETDPSDEEPWVVA 480
>gnl|CDD|179951 PRK05168, PRK05168, ribonuclease T; Provisional.
Length = 211
Score = 27.1 bits (61), Expect = 7.0
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 6/21 (28%)
Query: 84 TATLSAFSVGQTFGWSSPVLA 104
TATLS ++GQT VLA
Sbjct: 151 TATLSGLALGQT------VLA 165
>gnl|CDD|224177 COG1257, HMG1, Hydroxymethylglutaryl-CoA reductase [Lipid
metabolism].
Length = 436
Score = 26.9 bits (60), Expect = 7.9
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 43 VPMSEDESSWVVASMEFGCWAI 64
+PM+ E + +VAS G I
Sbjct: 88 IPMATTEGA-LVASASRGAKLI 108
Score = 26.9 bits (60), Expect = 7.9
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 113 VPMSEDESSWVVASMEFGCWAI 134
+PM+ E + +VAS G I
Sbjct: 88 IPMATTEGA-LVASASRGAKLI 108
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.134 0.446
Gapped
Lambda K H
0.267 0.0816 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,824,986
Number of extensions: 976212
Number of successful extensions: 1138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1119
Number of HSP's successfully gapped: 86
Length of query: 213
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 120
Effective length of database: 6,812,680
Effective search space: 817521600
Effective search space used: 817521600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.6 bits)