RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3292
         (213 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.5 bits (70), Expect = 0.10
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 23/52 (44%)

Query: 7  RQILAGMSATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASME 58
          +Q L  + A+L  ++       S+P LA                  + A+ME
Sbjct: 19 KQALKKLQASLKLYADD-----SAPALA------------------IKATME 47



 Score = 28.4 bits (62), Expect = 1.1
 Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 10/23 (43%)

Query: 196 KSSLVRLEGS----------ALA 208
           K +L +L+ S          ALA
Sbjct: 19  KQALKKLQASLKLYADDSAPALA 41



 Score = 28.0 bits (61), Expect = 1.6
 Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 8/24 (33%)

Query: 106 LVSPDSPVP-MSEDESSWVVASME 128
           L + DS  P ++      + A+ME
Sbjct: 31  LYADDS-APALA------IKATME 47


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.1 bits (64), Expect = 1.5
 Identities = 23/215 (10%), Positives = 48/215 (22%), Gaps = 94/215 (43%)

Query: 1   MLSGTTRQILAGMSATLSAFSVGQTFG----W------SSPV--------LAYLVSPD-- 40
           +L G+ +  +A       ++ V         W      +SP         L Y + P+  
Sbjct: 158 VL-GSGKTWVA--LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 41  ------SPVPMSEDE-------------------------SSWVVASMEFGCWAIPFFAG 69
                 S + +                             ++    +    C        
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-------- 266

Query: 70  MLCDRIGRKWTLLSTATLSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDES-----SWVV 124
                   K  LL+T              S+    ++      + ++ DE       ++ 
Sbjct: 267 --------K-ILLTTRFKQVTDFL-----SAATTTHISLDHHSMTLTPDEVKSLLLKYL- 311

Query: 125 ASMEFG------CWAIPF----FAGMLCDRIGRKW 149
                           P      A  + D +   W
Sbjct: 312 -DCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-W 344


>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
           symport, sugar transport, transmembrane, formylation;
           2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
           1pv6_A 2cfp_A 2v8n_A 2y5y_A*
          Length = 417

 Score = 26.8 bits (59), Expect = 6.3
 Identities = 11/59 (18%), Positives = 23/59 (38%)

Query: 45  MSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSVGQTFGWSSPVL 103
           +S+ ++  + A++           G+L D++G +  LL   T         F +    L
Sbjct: 40  ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPL 98


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.134    0.446 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,256,174
Number of extensions: 180370
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 16
Length of query: 213
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 123
Effective length of database: 4,188,903
Effective search space: 515235069
Effective search space used: 515235069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.1 bits)