RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3292
         (213 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 30.4 bits (67), Expect = 0.17
 Identities = 8/52 (15%), Positives = 18/52 (34%)

Query: 45  MSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTATLSAFSVGQTF 96
            S  +  + ++ +        F  G + DR   +  L +   L+A  +    
Sbjct: 56  FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG 107



 Score = 29.3 bits (64), Expect = 0.39
 Identities = 7/44 (15%), Positives = 16/44 (36%)

Query: 115 MSEDESSWVVASMEFGCWAIPFFAGMLCDRIGRKWTLLSTGMLC 158
            S  +  + ++ +        F  G + DR   +  L +  +L 
Sbjct: 56  FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 99


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 27.8 bits (60), Expect = 1.0
 Identities = 13/90 (14%), Positives = 28/90 (31%)

Query: 17  LSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG 76
              F     F   +    + +       +S+ ++  + A++           G+L D++G
Sbjct: 12  FGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLG 71

Query: 77  RKWTLLSTATLSAFSVGQTFGWSSPVLAYL 106
            +  LL   T         F +    L   
Sbjct: 72  LRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101



 Score = 27.4 bits (59), Expect = 1.6
 Identities = 10/72 (13%), Positives = 24/72 (33%)

Query: 87  LSAFSVGQTFGWSSPVLAYLVSPDSPVPMSEDESSWVVASMEFGCWAIPFFAGMLCDRIG 146
              F     F   +    + +       +S+ ++  + A++           G+L D++G
Sbjct: 12  FGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLG 71

Query: 147 RKWTLLSTGMLC 158
            +  LL      
Sbjct: 72  LRKYLLWIITGM 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.134    0.446 

Gapped
Lambda     K      H
   0.267   0.0570    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 804,778
Number of extensions: 35044
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 16
Length of query: 213
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 131
Effective length of database: 1,281,736
Effective search space: 167907416
Effective search space used: 167907416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)