BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy33
(214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DRX|A Chain A, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|B Chain B, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|C Chain C, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|D Chain D, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|E Chain E, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRY|A Chain A, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|B Chain B, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|C Chain C, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|D Chain D, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|E Chain E, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
Length = 202
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 74/132 (56%), Gaps = 10/132 (7%)
Query: 9 GNPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSE--GWVLIDRCGKHF 65
G+ ++V+LNVGG+ TT TL + + L + ++ +D + G LIDR +F
Sbjct: 8 GSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYF 67
Query: 66 GIILNFLRDGQVSLPENPKDVAE--LLAEAKYYCITELTDLCEQTIKRKQRETE--PICR 121
G +LN+LR G++ + KD+AE +L EA++Y IT L L + I+ + +T P+
Sbjct: 68 GPVLNYLRHGKLVI---NKDLAEEGVLEEAEFYNITSLIKLVKDKIRERDSKTSQVPVKH 124
Query: 122 VPLITSLKEEQL 133
V + +EE+L
Sbjct: 125 VYRVLQCQEEEL 136
>pdb|3DRZ|A Chain A, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|B Chain B, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|C Chain C, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|D Chain D, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|E Chain E, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
Length = 107
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 64/110 (58%), Gaps = 8/110 (7%)
Query: 8 SGNPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSE--GWVLIDRCGKH 64
SG+ ++V+LNVGG+ TT TL + + L + ++ +D + G LIDR +
Sbjct: 1 SGSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTY 60
Query: 65 FGIILNFLRDGQVSLPENPKDVAE--LLAEAKYYCITELTDLCEQTIKRK 112
FG +LN+LR G++ + KD+AE +L EA++Y IT L L + I+ +
Sbjct: 61 FGPVLNYLRHGKLVI---NKDLAEEGVLEEAEFYNITSLIKLVKDKIRER 107
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 25/101 (24%)
Query: 33 KHDTMLRAMFSGRMEILTDSEGWV---------LIDRCGKH-FGIILNFLRDGQVSLPEN 82
K+ + +GR +L DSEGWV L++ G F +ILN L
Sbjct: 364 KYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGF--- 420
Query: 83 PKDVAELLAEAKYYCITELTDLCEQTIKRKQRETEPICRVP 123
Y+C+T L T++ K E EP +VP
Sbjct: 421 ------------YWCLTNGDTLWRTTVEIKIIEGEPNLKVP 449
>pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus: Internal Aldimine Form
pdb|3B1C|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus: Internal Aldimine Form
pdb|3B1C|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus: Internal Aldimine Form
pdb|3B1C|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus: Internal Aldimine Form
pdb|3B1D|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: External Aldimine
Form
pdb|3B1D|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: External Aldimine
Form
pdb|3B1D|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: External Aldimine
Form
pdb|3B1D|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: External Aldimine
Form
pdb|3B1E|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
Form
pdb|3B1E|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
Form
pdb|3B1E|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
Form
pdb|3B1E|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
Form
Length = 392
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 90 LAEAKYYCITELTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINR 149
L +KY T L T K K+ ET+P I + E + P VK I+
Sbjct: 3 LGSSKYNFQTAPNRLSHHTYKWKETETDPQLLPAWIADMDFEVM-------PEVKQAIHD 55
Query: 150 HNNK--YSYTSTSDDNLLKNIELFDKLALRFS---GRLLFIKDVIGSSEICCWSFFGHGK 204
+ + Y YT SD+ LL+ + ++K ++S ++F++ V+ + I +F G+
Sbjct: 56 YAEQLVYGYTYASDE-LLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGE 114
Query: 205 KI 206
+
Sbjct: 115 AV 116
>pdb|3DRW|A Chain A, Crystal Structure Of A Phosphofructokinase From Pyrococcus
Horikoshii Ot3 With Amp
pdb|3DRW|B Chain B, Crystal Structure Of A Phosphofructokinase From Pyrococcus
Horikoshii Ot3 With Amp
Length = 474
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 59 DRCGKHFGIILNFL-----RDGQVSLPENPKDVAELLAEAKYYCITELTDLCEQTIKRKQ 113
+R G GII N L R P PK +AEL + Y + E +L + I+
Sbjct: 114 ERLGGQAGIIANTLAGLKIRKVIAYTPFLPKRLAELFKKGVLYPVVENGELQFKPIQEAY 173
Query: 114 RETEPI 119
RE +P+
Sbjct: 174 REGDPL 179
>pdb|1U2X|A Chain A, Crystal Structure Of A Hypothetical Adp-Dependent
Phosphofructokinase From Pyrococcus Horikoshii Ot3
pdb|1U2X|B Chain B, Crystal Structure Of A Hypothetical Adp-Dependent
Phosphofructokinase From Pyrococcus Horikoshii Ot3
Length = 474
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 59 DRCGKHFGIILNFL-----RDGQVSLPENPKDVAELLAEAKYYCITELTDLCEQTIKRKQ 113
+R G GII N L R P PK +AEL + Y + E +L + I+
Sbjct: 114 ERLGGQAGIIANTLAGLKIRKVIAYTPFLPKRLAELFKKGVLYPVVENGELQFKPIQEAY 173
Query: 114 RETEPI 119
RE +P+
Sbjct: 174 REGDPL 179
>pdb|2NZ0|B Chain B, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|D Chain D, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 140
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 15 VKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLR 73
+ LNV G T TL ++ DT+L + + + + DR + F +LNF R
Sbjct: 37 IVLNVSGRRFQTWRTTLERYPDTLLGS--TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYR 94
Query: 74 DGQVSLPENPKDVAELLAEAKYYCITE--LTDLCEQTIKRKQRET 116
G++ P + ++ E +Y I + D C + K ++RE
Sbjct: 95 TGKLHYPRY-ECISAYDDELAFYGILPEIIGDCCYEEYKDRKREN 138
>pdb|2I2R|A Chain A, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|B Chain B, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|C Chain C, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|D Chain D, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|I Chain I, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|J Chain J, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|K Chain K, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|L Chain L, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 144
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 15 VKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLR 73
+ LNV G T TL ++ DT+L + + + + DR + F +LNF R
Sbjct: 43 IVLNVSGRRFQTWRTTLERYPDTLLGS--TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYR 100
Query: 74 DGQVSLPENPKDVAELLAEAKYYCITE--LTDLCEQTIKRKQRET 116
G++ P + ++ E +Y I + D C + K ++RE
Sbjct: 101 TGKLHYPRY-ECISAYDDELAFYGILPEIIGDCCYEEYKDRKREN 144
>pdb|1S1G|A Chain A, Crystal Structure Of Kv4.3 T1 Domain
pdb|1S1G|B Chain B, Crystal Structure Of Kv4.3 T1 Domain
Length = 124
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 17 LNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDG 75
LNV G T TL ++ DT+L + + + + DR + F +LNF R G
Sbjct: 17 LNVSGRRFQTWRTTLERYPDTLLGS--TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTG 74
Query: 76 QVSLPENPKDVAELLAEAKYYCITE--LTDLCEQTIKRKQRET 116
++ P + ++ E +Y I + D C + K ++RE
Sbjct: 75 KLHYPRY-ECISAYDDELAFYGILPEIIGDCCYEEYKDRKREN 116
>pdb|1ZLI|A Chain A, Crystal Structure Of The Tick Carboxypeptidase Inhibitor
In Complex With Human Carboxypeptidase B
Length = 309
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Query: 128 LKEEQLLLNATAKPVVKLLINRHNNKYSY----------TSTSDDNLL-KNIELFDKLAL 176
L E LNA AK VK L + H KY+Y SDD + I L
Sbjct: 212 LGENNAELNALAKATVKELASLHGTKYTYGPGATTIYPAAGGSDDWAYDQGIRYSFTFEL 271
Query: 177 RFSGRLLFI 185
R +GR F+
Sbjct: 272 RDTGRYGFL 280
>pdb|1KWM|A Chain A, Human Procarboxypeptidase B: Three-Dimensional Structure
And Implications For Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|1KWM|B Chain B, Human Procarboxypeptidase B: Three-Dimensional Structure
And Implications For Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
Length = 402
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Query: 128 LKEEQLLLNATAKPVVKLLINRHNNKYSY----------TSTSDDNLL-KNIELFDKLAL 176
L E LNA AK VK L + H KY+Y SDD + I L
Sbjct: 305 LGENNAELNALAKATVKELASLHGTKYTYGPGATTIYPAAGGSDDWAYDQGIRYSFTFEL 364
Query: 177 RFSGRLLFI 185
R +GR F+
Sbjct: 365 RDTGRYGFL 373
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 65 FGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITELTDLCE 106
FG++L+F G ++L +D ++L AK + E +LC+
Sbjct: 73 FGLLLDFFYTGHLALTSGNRD--QVLLAAKELRVPEAVELCQ 112
>pdb|2FGE|A Chain A, Crystal Structure Of Presequence Protease Prep From
Arabidopsis Thaliana
pdb|2FGE|B Chain B, Crystal Structure Of Presequence Protease Prep From
Arabidopsis Thaliana
Length = 995
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 147 INRHNNKYSYTSTSDDNLLKNIELFD 172
+ H+ +SY S D NLLK ++++D
Sbjct: 860 FDSHSGVFSYLSYRDPNLLKTLDIYD 885
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,989,399
Number of Sequences: 62578
Number of extensions: 224915
Number of successful extensions: 592
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 584
Number of HSP's gapped (non-prelim): 19
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)