Query psy33
Match_columns 214
No_of_seqs 240 out of 1168
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 21:27:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy33.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/33hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2716|consensus 100.0 7.2E-44 1.6E-48 307.2 10.9 187 10-214 2-188 (230)
2 KOG2715|consensus 100.0 1.3E-35 2.9E-40 244.2 5.3 162 2-166 10-180 (210)
3 PF02214 BTB_2: BTB/POZ domain 99.9 5.2E-26 1.1E-30 169.9 5.6 90 15-105 1-94 (94)
4 KOG1665|consensus 99.9 1.2E-24 2.6E-29 186.9 5.4 98 9-107 5-105 (302)
5 KOG2714|consensus 99.9 3.9E-23 8.4E-28 190.1 7.9 97 6-103 4-102 (465)
6 KOG2723|consensus 99.8 9E-22 1.9E-26 169.2 5.3 164 8-189 4-169 (221)
7 KOG3713|consensus 99.7 1.1E-16 2.4E-21 149.8 7.4 103 10-113 28-141 (477)
8 KOG4390|consensus 99.5 4E-15 8.7E-20 136.8 4.0 93 9-105 36-131 (632)
9 smart00225 BTB Broad-Complex, 99.4 5.2E-13 1.1E-17 94.4 5.4 89 15-106 2-90 (90)
10 PHA02790 Kelch-like protein; P 98.9 1.7E-09 3.6E-14 102.3 6.6 92 17-112 26-119 (480)
11 PHA03098 kelch-like protein; P 98.9 2.4E-09 5.3E-14 101.4 7.7 94 12-112 11-104 (534)
12 PF00651 BTB: BTB/POZ domain; 98.8 7E-09 1.5E-13 77.6 5.7 98 11-112 9-110 (111)
13 PHA02713 hypothetical protein; 98.8 7.1E-09 1.5E-13 100.0 6.4 98 11-112 24-122 (557)
14 KOG4441|consensus 98.7 2.6E-08 5.7E-13 96.6 6.2 97 13-112 37-133 (571)
15 KOG1545|consensus 98.7 9.9E-09 2.2E-13 94.2 2.6 88 11-100 59-148 (507)
16 KOG3840|consensus 98.0 8.4E-06 1.8E-10 73.8 5.2 90 9-99 92-185 (438)
17 KOG4350|consensus 97.1 0.0005 1.1E-08 64.7 3.7 73 8-81 40-112 (620)
18 KOG2075|consensus 95.3 0.031 6.7E-07 53.5 5.6 97 12-112 114-216 (521)
19 KOG0783|consensus 91.4 0.22 4.8E-06 50.9 4.1 94 13-106 559-682 (1267)
20 KOG4682|consensus 90.1 0.28 6.1E-06 46.4 3.2 100 8-112 65-169 (488)
21 KOG4591|consensus 89.7 0.35 7.6E-06 42.1 3.3 93 13-109 67-162 (280)
22 PF11822 DUF3342: Domain of un 66.1 6 0.00013 36.3 3.2 89 22-112 14-103 (317)
23 KOG3473|consensus 61.9 14 0.0003 28.7 4.0 86 8-96 12-110 (112)
24 cd02987 Phd_like_Phd Phosducin 59.0 1E+02 0.0022 25.4 9.2 81 119-210 61-152 (175)
25 smart00512 Skp1 Found in Skp1 58.3 12 0.00027 27.9 3.2 55 20-76 10-65 (104)
26 PF02519 Auxin_inducible: Auxi 56.8 20 0.00044 27.3 4.1 61 10-72 36-99 (100)
27 PF01466 Skp1: Skp1 family, di 52.6 16 0.00036 26.1 2.9 31 83-113 13-43 (78)
28 KOG0783|consensus 49.3 8.2 0.00018 40.1 1.2 95 12-111 712-813 (1267)
29 KOG0907|consensus 46.1 20 0.00042 27.5 2.6 66 136-212 18-93 (106)
30 KOG1724|consensus 43.7 82 0.0018 26.1 6.1 97 13-112 5-126 (162)
31 COG5201 SKP1 SCF ubiquitin lig 42.1 77 0.0017 25.9 5.4 92 14-114 4-123 (158)
32 PF12926 MOZART2: Mitotic-spin 37.3 13 0.00029 28.0 0.4 19 59-77 40-58 (88)
33 cd02957 Phd_like Phosducin (Ph 36.1 1.6E+02 0.0035 21.7 6.3 77 122-210 6-93 (113)
34 PF03931 Skp1_POZ: Skp1 family 32.5 50 0.0011 22.4 2.7 55 15-74 3-59 (62)
35 TIGR01068 thioredoxin thioredo 32.2 1.3E+02 0.0028 20.8 5.0 67 130-206 5-81 (101)
36 cd02984 TRX_PICOT TRX domain, 31.2 1.6E+02 0.0034 20.6 5.3 71 129-209 3-84 (97)
37 PF10065 DUF2303: Uncharacteri 28.6 3.8E+02 0.0082 23.9 8.3 114 51-174 78-209 (276)
38 PRK10415 tRNA-dihydrouridine s 25.6 58 0.0013 29.5 2.6 24 55-78 220-247 (321)
39 COG1880 CdhB CO dehydrogenase/ 23.7 67 0.0014 26.9 2.4 106 61-167 48-163 (170)
40 PF11385 DUF3189: Protein of u 23.4 64 0.0014 26.3 2.2 30 164-194 34-64 (148)
41 PRK14751 tetracycline resistan 22.0 41 0.00089 19.7 0.6 10 192-201 15-24 (28)
42 PF09857 DUF2084: Uncharacteri 21.2 1.1E+02 0.0024 22.8 2.9 21 178-212 16-36 (85)
43 cd03004 PDI_a_ERdj5_C PDIa fam 20.9 67 0.0014 23.1 1.7 69 128-206 8-87 (104)
44 PF10785 NADH-u_ox-rdase: NADH 20.9 51 0.0011 24.4 1.0 20 56-76 5-24 (86)
45 PLN02975 complex I subunit 20.5 60 0.0013 24.9 1.4 24 52-76 7-30 (97)
No 1
>KOG2716|consensus
Probab=100.00 E-value=7.2e-44 Score=307.17 Aligned_cols=187 Identities=39% Similarity=0.527 Sum_probs=174.5
Q ss_pred CCCceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEEcCCCCchHHHhhchhcCceecCCCchhHHHH
Q psy33 10 NPCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAEL 89 (214)
Q Consensus 10 ~~~~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fIDRdp~~F~~ILnyLR~G~l~lp~~~~e~~~L 89 (214)
..++.|+|||||+.|.|+++||+++++||++|+++++++..|+.|+|||||+|+||+.||||||+|.++||++..++++|
T Consensus 2 ~~~~~vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~El 81 (230)
T KOG2716|consen 2 SMSETVKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELKEL 81 (230)
T ss_pred CccceEEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHHHH
Confidence 35789999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHhhcccCchhHHHHHHHHHHHhhcCCCCceeeeeccCHHHHHHHHhcCCCCEEEEEEEeeCCeeEeeccChhHHhhhhc
Q psy33 90 LAEAKYYCITELTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIE 169 (214)
Q Consensus 90 l~EA~fy~L~~Lv~~c~~~L~~~~~~~~p~~~v~~i~~~~e~~~~i~~~~k~~~~~~~~~~~~~ysy~~~~~~~~l~n~e 169 (214)
++||+||.|++|++.|+..+........ +++++..|.+++++++.||++++.|.++|+.+.|.+.+.+.-..+.+
T Consensus 82 ~~EA~fYlL~~Lv~~C~~~i~~~~~~~~-----~~~~~~~e~~~ii~~~~Kp~l~i~y~~~~~~~~~~p~~f~~~~~~e~ 156 (230)
T KOG2716|consen 82 LREAEFYLLDGLVELCQSAIARLIRGYI-----TPIESSEELLQIIANSSKPVLVINYNRANNELSYPPNGFDFQEFNEE 156 (230)
T ss_pred HHHHHHhhHHHHHHHHHHHhhhcccCcc-----ccccchHHHHHHhhccCCCeEEEEecCCCCceeeCCCCCcHHHHHHH
Confidence 9999999999999999999987654322 36788899999999999999999999999999999999998889999
Q ss_pred ccceeeeeecceEEEEeeccCCCceeeeEEeeCceeEeEEeeecC
Q psy33 170 LFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSI 214 (214)
Q Consensus 170 ~fd~l~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (214)
.+|++.+.| +++|||++|++++|..+.||.+.
T Consensus 157 ~~d~l~i~f-------------~~~~~~~~~~~~~k~~~~~~~~~ 188 (230)
T KOG2716|consen 157 YSDKLDNYF-------------KESESESFELTIKKFPERCKDSE 188 (230)
T ss_pred HHHHHHhHh-------------hhhhhhhhhccccccCCccccCC
Confidence 999999888 89999999999999999999863
No 2
>KOG2715|consensus
Probab=100.00 E-value=1.3e-35 Score=244.18 Aligned_cols=162 Identities=25% Similarity=0.386 Sum_probs=142.8
Q ss_pred CcccccCCCCCceEEEEECCeEEEeeHHhhcCC-CcchhhhhcCCCcc--ccCCCceEEEcCCCCchHHHhhchhcCcee
Q psy33 2 SINFIVSGNPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEI--LTDSEGWVLIDRCGKHFGIILNFLRDGQVS 78 (214)
Q Consensus 2 ~~~~~~~~~~~~~V~LNVGG~~F~Ttr~TL~k~-~s~L~~mfs~~~~~--~~d~~g~~fIDRdp~~F~~ILnyLR~G~l~ 78 (214)
|++.......+.||+|||||+.|.|+|+||.+. .+|+.++++..+.. ..|++|+|||||||.+|.+||||||+|++.
T Consensus 10 sp~~~~~~g~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklv 89 (210)
T KOG2715|consen 10 SPASTNGNGVSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLV 89 (210)
T ss_pred CchhhcCCCceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhh
Confidence 455445556679999999999999999999999 69999999877544 457899999999999999999999999999
Q ss_pred cCCCchhHHHHHHhhcccCchhHHHHHHHHHHHhhc--CCCCceee-eeccCHHHHH-HHHhc-CCCCEEEEEEEeeCCe
Q psy33 79 LPENPKDVAELLAEAKYYCITELTDLCEQTIKRKQR--ETEPICRV-PLITSLKEEQ-LLLNA-TAKPVVKLLINRHNNK 153 (214)
Q Consensus 79 lp~~~~e~~~Ll~EA~fy~L~~Lv~~c~~~L~~~~~--~~~p~~~v-~~i~~~~e~~-~~i~~-~~k~~~~~~~~~~~~~ 153 (214)
+.+ ..+ +.+++||+||++.+|++++++.|+++.. .+.+..+| |+++|++|++ ||+++ ++.|.++.+++.+ +.
T Consensus 90 l~~-l~e-eGvL~EAefyn~~~li~likd~i~dRd~~~tq~~~k~vyrvLqcqeeeltqmvStmsDgw~~~qlv~i~-ss 166 (210)
T KOG2715|consen 90 LNK-LSE-EGVLEEAEFYNDPSLIQLIKDRIQDRDAMVTQEADKFVYRVLQCQEEELTQMVSTMSDGWKIEQLVSIS-SS 166 (210)
T ss_pred hhh-hhh-hccchhhhccCChHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHhhccccHhHHHHhhcc-cc
Confidence 887 555 8999999999999999999999999875 56677777 9999999997 89987 8999999998876 67
Q ss_pred e-EeeccChhHHhh
Q psy33 154 Y-SYTSTSDDNLLK 166 (214)
Q Consensus 154 y-sy~~~~~~~~l~ 166 (214)
| +|++..+.+||+
T Consensus 167 y~ny~~e~~~E~lc 180 (210)
T KOG2715|consen 167 YPNYGDEKEEEFLC 180 (210)
T ss_pred CCCCCCcchHHHHH
Confidence 7 899999999998
No 3
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=99.92 E-value=5.2e-26 Score=169.94 Aligned_cols=90 Identities=41% Similarity=0.711 Sum_probs=75.5
Q ss_pred EEEEECCeEEEeeHHhhcCC-CcchhhhhcCC-CccccCCCceEEEcCCCCchHHHhhchhc-CceecCCCchhHHHHHH
Q psy33 15 VKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGR-MEILTDSEGWVLIDRCGKHFGIILNFLRD-GQVSLPENPKDVAELLA 91 (214)
Q Consensus 15 V~LNVGG~~F~Ttr~TL~k~-~s~L~~mfs~~-~~~~~d~~g~~fIDRdp~~F~~ILnyLR~-G~l~lp~~~~e~~~Ll~ 91 (214)
|+|||||+.|.|+++||.+. +|+|++|++++ .....+.++++||||||.+|++||+|||+ |+++.|.+. .+..+++
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~~~l~~~~~~-~~~~l~~ 79 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTGGKLPIPDEI-CLEELLE 79 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHTSSB---TTS--HHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhcCccCCCCch-hHHHHHH
Confidence 78999999999999999988 99999999976 44455678999999999999999999999 788877664 4799999
Q ss_pred hhcccCchhH-HHHH
Q psy33 92 EAKYYCITEL-TDLC 105 (214)
Q Consensus 92 EA~fy~L~~L-v~~c 105 (214)
||+||+|++| ++.|
T Consensus 80 Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 80 EAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHT-HHHHBHHC
T ss_pred HHHHcCCCccccCCC
Confidence 9999999998 7765
No 4
>KOG1665|consensus
Probab=99.90 E-value=1.2e-24 Score=186.91 Aligned_cols=98 Identities=46% Similarity=0.632 Sum_probs=88.7
Q ss_pred CCCCceEEEEECCeEEEeeHHhhcCC--CcchhhhhcCCC-ccccCCCceEEEcCCCCchHHHhhchhcCceecCCCchh
Q psy33 9 GNPCQYVKLNVGGSLHYTTIGTLTKH--DTMLRAMFSGRM-EILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKD 85 (214)
Q Consensus 9 ~~~~~~V~LNVGG~~F~Ttr~TL~k~--~s~L~~mfs~~~-~~~~d~~g~~fIDRdp~~F~~ILnyLR~G~l~lp~~~~e 85 (214)
..++.||+|||||++|.||++||+-. ||||++||+++. ....|+.|.+||||||++|++||||||+|.++...+. +
T Consensus 5 ~~~~~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i-~ 83 (302)
T KOG1665|consen 5 SNLSSMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDI-D 83 (302)
T ss_pred cChhhhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCc-c
Confidence 45689999999999999999999866 999999999874 3456789999999999999999999999999877764 5
Q ss_pred HHHHHHhhcccCchhHHHHHHH
Q psy33 86 VAELLAEAKYYCITELTDLCEQ 107 (214)
Q Consensus 86 ~~~Ll~EA~fy~L~~Lv~~c~~ 107 (214)
..++++||.||+|-+|++.+++
T Consensus 84 ~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 84 CLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHHHHhhHHhhHhHHhHHhh
Confidence 8999999999999999999887
No 5
>KOG2714|consensus
Probab=99.88 E-value=3.9e-23 Score=190.15 Aligned_cols=97 Identities=37% Similarity=0.508 Sum_probs=88.0
Q ss_pred ccCCCCCceEEEEECCeEEEeeHHhhcCC--CcchhhhhcCCCccccCCCceEEEcCCCCchHHHhhchhcCceecCCCc
Q psy33 6 IVSGNPCQYVKLNVGGSLHYTTIGTLTKH--DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENP 83 (214)
Q Consensus 6 ~~~~~~~~~V~LNVGG~~F~Ttr~TL~k~--~s~L~~mfs~~~~~~~d~~g~~fIDRdp~~F~~ILnyLR~G~l~lp~~~ 83 (214)
-.-+.++++|+|||||++|.|+++||+.- ||+|.++++|++...+|+.+.+||||||++|..||||||+|.++++...
T Consensus 4 ~~~~~~~~~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~ 83 (465)
T KOG2714|consen 4 PAMGSSGDRVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVF 83 (465)
T ss_pred cccCCCCceEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCc
Confidence 34466789999999999999999999987 9999999999999889999999999999999999999999999997654
Q ss_pred hhHHHHHHhhcccCchhHHH
Q psy33 84 KDVAELLAEAKYYCITELTD 103 (214)
Q Consensus 84 ~e~~~Ll~EA~fy~L~~Lv~ 103 (214)
. .+.+.+||.||||.+|++
T Consensus 84 ~-~~llhdEA~fYGl~~llr 102 (465)
T KOG2714|consen 84 P-ERLLHDEAMFYGLTPLLR 102 (465)
T ss_pred h-hhhhhhhhhhcCcHHHHH
Confidence 4 366777999999999988
No 6
>KOG2723|consensus
Probab=99.84 E-value=9e-22 Score=169.15 Aligned_cols=164 Identities=30% Similarity=0.405 Sum_probs=118.9
Q ss_pred CCCCCceEEEEECCeEEEeeHHhhcCC-CcchhhhhcCCCccccCCCceEEEcCCCCchHHHhhchhcCceecCCCchhH
Q psy33 8 SGNPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDV 86 (214)
Q Consensus 8 ~~~~~~~V~LNVGG~~F~Ttr~TL~k~-~s~L~~mfs~~~~~~~d~~g~~fIDRdp~~F~~ILnyLR~G~l~lp~~~~e~ 86 (214)
++..+++|+|||||+.|+|++.||+++ +|+|++||++..+..+|..|.+|||||+.+|++||+|||+..+.+|++.+++
T Consensus 4 ~~~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fIDRDG~lFRyvL~~LRt~~l~lpe~f~e~ 83 (221)
T KOG2723|consen 4 TSEYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFIDRDGFLFRYVLDYLRTKALLLPEDFAEV 83 (221)
T ss_pred ccccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEEcCCcchHHHHHHHhcccccccchhhhhH
Confidence 445689999999999999999999999 9999999999888888999999999999999999999999888899999999
Q ss_pred HHHHHhhcccCchhHHHHHHHHHHHhhcCCCCceeeeeccCHHHHHHHHhcCCCCEEEEEEEeeCCeeEeeccChhHHhh
Q psy33 87 AELLAEAKYYCITELTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTSDDNLLK 166 (214)
Q Consensus 87 ~~Ll~EA~fy~L~~Lv~~c~~~L~~~~~~~~p~~~v~~i~~~~e~~~~i~~~~k~~~~~~~~~~~~~ysy~~~~~~~~l~ 166 (214)
..|.+||+||++.++...+....+.......-.|. ..++.. ...+..+.+ +.+-+| +.++.-..
T Consensus 84 ~~L~rEA~f~~l~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~--------~~~~~~~~~----g~r~~~-~g~~~~~~- 147 (221)
T KOG2723|consen 84 ERLVREAEFFQLEAPVTYLLNSGQIDTERRNRFCR--SDECDG--------LRARGGPTL----GYRGSL-FGRDAQAD- 147 (221)
T ss_pred HHHHHHHHHHccccHHHHHhccccccccccccccc--cccccc--------ccccccccc----cchhhe-ecCcccce-
Confidence 99999999999998887655443322111000111 111100 011111111 123334 33333222
Q ss_pred hhccccee-eeeecceEEEEeecc
Q psy33 167 NIELFDKL-ALRFSGRLLFIKDVI 189 (214)
Q Consensus 167 n~e~fd~l-~~~~~~~v~~~k~~~ 189 (214)
+.|.++ ++..+||.-..|.++
T Consensus 148 --~~~~~~~~~~~~~~~~l~~~~~ 169 (221)
T KOG2723|consen 148 --EKFRRVVRILVCGRGALGKEVF 169 (221)
T ss_pred --eeccchhhhhhhhhhhhhhccc
Confidence 588888 688888887777775
No 7
>KOG3713|consensus
Probab=99.66 E-value=1.1e-16 Score=149.79 Aligned_cols=103 Identities=27% Similarity=0.404 Sum_probs=87.4
Q ss_pred CCCceEEEEECCeEEEeeHHhhcCC-CcchhhhhcCC-----CccccC---CCceEEEcCCCCchHHHhhchhcCceecC
Q psy33 10 NPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGR-----MEILTD---SEGWVLIDRCGKHFGIILNFLRDGQVSLP 80 (214)
Q Consensus 10 ~~~~~V~LNVGG~~F~Ttr~TL~k~-~s~L~~mfs~~-----~~~~~d---~~g~~fIDRdp~~F~~ILnyLR~G~l~lp 80 (214)
..++.|+|||||++|.+.++||.+. .+.|+++.... .+.+.| .+++||+||+|.+|++||||+|+|+++.|
T Consensus 28 ~~~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFDR~P~~F~~Vl~fYrtGkLH~p 107 (477)
T KOG3713|consen 28 ALDRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFDRHPGAFAYVLNFYRTGKLHVP 107 (477)
T ss_pred CcCcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeeeccChHHHHHHHHHHhcCeeccc
Confidence 3456999999999999999999999 99999987633 122332 56899999999999999999999999999
Q ss_pred CCchhHHHHHHhhcccCchh--HHHHHHHHHHHhh
Q psy33 81 ENPKDVAELLAEAKYYCITE--LTDLCEQTIKRKQ 113 (214)
Q Consensus 81 ~~~~e~~~Ll~EA~fy~L~~--Lv~~c~~~L~~~~ 113 (214)
.+.+. ..+.+|.+||||++ +..+|+..++++.
T Consensus 108 ~~vC~-~~F~eEL~yWgI~~~~le~CC~~~~~~~~ 141 (477)
T KOG3713|consen 108 ADVCP-LSFEEELDYWGIDEAHLESCCWMRYRQRR 141 (477)
T ss_pred cccch-HHHHHHHHHhCCChhhhhHHhHHHHhhcH
Confidence 99995 99999999999987 7778887776544
No 8
>KOG4390|consensus
Probab=99.53 E-value=4e-15 Score=136.77 Aligned_cols=93 Identities=29% Similarity=0.417 Sum_probs=77.4
Q ss_pred CCCCceEEEEECCeEEEeeHHhhcCC-CcchhhhhcCCCccccC-CCceEEEcCCCCchHHHhhchhcCceecCCCchhH
Q psy33 9 GNPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTD-SEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDV 86 (214)
Q Consensus 9 ~~~~~~V~LNVGG~~F~Ttr~TL~k~-~s~L~~mfs~~~~~~~d-~~g~~fIDRdp~~F~~ILnyLR~G~l~lp~~~~e~ 86 (214)
...++.+.|||.|++|.|++.||.++ +++|++- ..+.--| ++|+||+||||++|+|||||+|+|+++-|...+ +
T Consensus 36 ~r~De~lvlNvSGrRFeTWknTLeryPdTLLGSs---EkeFFy~~dt~eYFFDRDPdiFRhvLnFYRTGkLHyPR~EC-i 111 (632)
T KOG4390|consen 36 KRQDELLVLNVSGRRFETWKNTLERYPDTLLGSS---EKEFFYDEDTGEYFFDRDPDIFRHVLNFYRTGKLHYPRHEC-I 111 (632)
T ss_pred hccCcEEEEeccccchhHHHhHHHhCchhhhCCc---chheeecCCcccccccCChHHHHHHHHHhhcCcccCchHHH-H
Confidence 34678999999999999999999999 8888742 2222223 579999999999999999999999999998766 6
Q ss_pred HHHHHhhcccCch-hHHHHH
Q psy33 87 AELLAEAKYYCIT-ELTDLC 105 (214)
Q Consensus 87 ~~Ll~EA~fy~L~-~Lv~~c 105 (214)
...-+|..||||- +|+-.|
T Consensus 112 ~AyDeELaF~Gl~PeligDC 131 (632)
T KOG4390|consen 112 SAYDEELAFYGLVPELIGDC 131 (632)
T ss_pred HHhhhhhhHhcccHHHHhhh
Confidence 8888999999994 466544
No 9
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.39 E-value=5.2e-13 Score=94.45 Aligned_cols=89 Identities=35% Similarity=0.539 Sum_probs=77.3
Q ss_pred EEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEEcCCCCchHHHhhchhcCceecCCCchhHHHHHHhhc
Q psy33 15 VKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAK 94 (214)
Q Consensus 15 V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fIDRdp~~F~~ILnyLR~G~l~lp~~~~e~~~Ll~EA~ 94 (214)
|+|+|||+.|.+++..|+..+++|..|+.+.+... +.....+.|.++..|+.+|+|+++|++.++.+ .+..+++.|.
T Consensus 2 v~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~-~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~--~~~~l~~~a~ 78 (90)
T smart00225 2 VTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKES-KKSEIYLDDVSPEDFRALLEFLYTGKLDLPEE--NVEELLELAD 78 (90)
T ss_pred eEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccC-CCCEEEecCCCHHHHHHHHHeecCceeecCHH--HHHHHHHHHH
Confidence 67999999999999999999999999998765422 23455577899999999999999999988875 5799999999
Q ss_pred ccCchhHHHHHH
Q psy33 95 YYCITELTDLCE 106 (214)
Q Consensus 95 fy~L~~Lv~~c~ 106 (214)
||++++|++.|+
T Consensus 79 ~~~~~~l~~~c~ 90 (90)
T smart00225 79 YLQIPGLVELCE 90 (90)
T ss_pred HHCcHHHHhhhC
Confidence 999999999874
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=98.92 E-value=1.7e-09 Score=102.34 Aligned_cols=92 Identities=16% Similarity=0.157 Sum_probs=79.2
Q ss_pred EEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEE--EcCCCCchHHHhhchhcCceecCCCchhHHHHHHhhc
Q psy33 17 LNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVL--IDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAK 94 (214)
Q Consensus 17 LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~f--IDRdp~~F~~ILnyLR~G~l~lp~~~~e~~~Ll~EA~ 94 (214)
|-|.|..|..+|..|+..++||++||++++....+ .... +|-|+..++.||+|+++|++.+..+ +++.+++.|.
T Consensus 26 ~~~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~--~v~~~~~~v~~~~l~~lldy~YTg~l~it~~--nV~~ll~aA~ 101 (480)
T PHA02790 26 IEAIGGNIIVNSTILKKLSPYFRTHLRQKYTKNKD--PVTRVCLDLDIHSLTSIVIYSYTGKVYIDSH--NVVNLLRASI 101 (480)
T ss_pred EEEcCcEEeeehhhhhhcCHHHHHHhcCCcccccc--ceEEEecCcCHHHHHHHHHhheeeeEEEecc--cHHHHHHHHH
Confidence 45677799999999999999999999998865432 2233 3899999999999999999999876 5899999999
Q ss_pred ccCchhHHHHHHHHHHHh
Q psy33 95 YYCITELTDLCEQTIKRK 112 (214)
Q Consensus 95 fy~L~~Lv~~c~~~L~~~ 112 (214)
++|+++++++|.+.|+++
T Consensus 102 ~Lqi~~v~~~C~~fL~~~ 119 (480)
T PHA02790 102 LTSVEFIIYTCINFILRD 119 (480)
T ss_pred HhChHHHHHHHHHHHHhh
Confidence 999999999999998864
No 11
>PHA03098 kelch-like protein; Provisional
Probab=98.92 E-value=2.4e-09 Score=101.38 Aligned_cols=94 Identities=19% Similarity=0.326 Sum_probs=80.4
Q ss_pred CceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEEcCCCCchHHHhhchhcCceecCCCchhHHHHHH
Q psy33 12 CQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLA 91 (214)
Q Consensus 12 ~~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fIDRdp~~F~~ILnyLR~G~l~lp~~~~e~~~Ll~ 91 (214)
+-.|.+.|||+.|..+|..|+..+.+|++||++.+. ++...+-+ +++.|+.||+|+++|++.++.+ ++.+|+.
T Consensus 11 Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~----~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~--~~~~ll~ 83 (534)
T PHA03098 11 DESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK----ENEINLNI-DYDSFNEVIKYIYTGKINITSN--NVKDILS 83 (534)
T ss_pred CEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC----CceEEecC-CHHHHHHHHHHhcCCceEEcHH--HHHHHHH
Confidence 344555669999999999999999999999998776 23344556 9999999999999999998765 5899999
Q ss_pred hhcccCchhHHHHHHHHHHHh
Q psy33 92 EAKYYCITELTDLCEQTIKRK 112 (214)
Q Consensus 92 EA~fy~L~~Lv~~c~~~L~~~ 112 (214)
.|.+|+++.|.+.|++.|.+.
T Consensus 84 ~A~~l~~~~l~~~C~~~l~~~ 104 (534)
T PHA03098 84 IANYLIIDFLINLCINYIIKI 104 (534)
T ss_pred HHHHhCcHHHHHHHHHHHHHh
Confidence 999999999999999888753
No 12
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=98.82 E-value=7e-09 Score=77.63 Aligned_cols=98 Identities=24% Similarity=0.419 Sum_probs=79.2
Q ss_pred CCceEEEEEC-CeEEEeeHHhhcCCCcchhhhhcCCCccccCCCc--eE-EEcCCCCchHHHhhchhcCceecCCCchhH
Q psy33 11 PCQYVKLNVG-GSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEG--WV-LIDRCGKHFGIILNFLRDGQVSLPENPKDV 86 (214)
Q Consensus 11 ~~~~V~LNVG-G~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g--~~-fIDRdp~~F~~ILnyLR~G~l~lp~~~~e~ 86 (214)
...-+.|.|| |..|.++|..|+..+++|+.||.+... .+.+ .+ +-|-++..|..+++|+++|.+.++ +...+
T Consensus 9 ~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~-~~~~~ 84 (111)
T PF00651_consen 9 EFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKF---KESTVPEISLPDVSPEAFEAFLEYMYTGEIEIN-SDENV 84 (111)
T ss_dssp TS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTS---TTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE--TTTH
T ss_pred CCCCEEEEECCCEEEeechhhhhccchhhhhccccccc---ccccccccccccccccccccccccccCCcccCC-HHHHH
Confidence 4556899999 999999999999999999999987611 1222 34 456889999999999999999887 22458
Q ss_pred HHHHHhhcccCchhHHHHHHHHHHHh
Q psy33 87 AELLAEAKYYCITELTDLCEQTIKRK 112 (214)
Q Consensus 87 ~~Ll~EA~fy~L~~Lv~~c~~~L~~~ 112 (214)
..+++-|.+|+++.|.+.|++.|.+.
T Consensus 85 ~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 85 EELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 99999999999999999999999764
No 13
>PHA02713 hypothetical protein; Provisional
Probab=98.80 E-value=7.1e-09 Score=99.97 Aligned_cols=98 Identities=21% Similarity=0.218 Sum_probs=82.0
Q ss_pred CCceEEEEEC-CeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEEcCCCCchHHHhhchhcCceecCCCchhHHHH
Q psy33 11 PCQYVKLNVG-GSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAEL 89 (214)
Q Consensus 11 ~~~~V~LNVG-G~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fIDRdp~~F~~ILnyLR~G~l~lp~~~~e~~~L 89 (214)
.---|+|.|+ |+.|..+|..|+..+.||++||++++......+...+.|-++..|+.||+|+++|++ +. .+++.+
T Consensus 24 ~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~i--~~--~nv~~l 99 (557)
T PHA02713 24 ILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRHI--SS--MNVIDV 99 (557)
T ss_pred CCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCCC--CH--HHHHHH
Confidence 3456889998 899999999999999999999998875432123344668999999999999999984 43 358999
Q ss_pred HHhhcccCchhHHHHHHHHHHHh
Q psy33 90 LAEAKYYCITELTDLCEQTIKRK 112 (214)
Q Consensus 90 l~EA~fy~L~~Lv~~c~~~L~~~ 112 (214)
+..|.+++++.|+++|.+.|++.
T Consensus 100 l~aA~~lqi~~l~~~C~~~l~~~ 122 (557)
T PHA02713 100 LKCADYLLIDDLVTDCESYIKDY 122 (557)
T ss_pred HHHHHHHCHHHHHHHHHHHHHhh
Confidence 99999999999999999998753
No 14
>KOG4441|consensus
Probab=98.68 E-value=2.6e-08 Score=96.58 Aligned_cols=97 Identities=23% Similarity=0.316 Sum_probs=86.5
Q ss_pred ceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEEcCCCCchHHHhhchhcCceecCCCchhHHHHHHh
Q psy33 13 QYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAE 92 (214)
Q Consensus 13 ~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fIDRdp~~F~~ILnyLR~G~l~lp~~~~e~~~Ll~E 92 (214)
-.|.|-||++.|..+|..|+..+.||++||++.+.... .....+.+-||..++.+++|.++|++.+..+ ++++|++.
T Consensus 37 cDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~-~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~--nVq~ll~a 113 (571)
T KOG4441|consen 37 CDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESK-QKEINLEGVDPETLELLLDYAYTGKLEISED--NVQELLEA 113 (571)
T ss_pred ceEEEEECCeeechHHHHHHhccHHHHHHhcCCccccc-ceEEEEecCCHHHHHHHHHHhhcceEEechH--hHHHHHHH
Confidence 46899999999999999999999999999998876543 4455677899999999999999999998875 58999999
Q ss_pred hcccCchhHHHHHHHHHHHh
Q psy33 93 AKYYCITELTDLCEQTIKRK 112 (214)
Q Consensus 93 A~fy~L~~Lv~~c~~~L~~~ 112 (214)
|.++||.+++++|.+.|+++
T Consensus 114 A~~lQi~~v~~~C~~fL~~~ 133 (571)
T KOG4441|consen 114 ASLLQIPEVVDACCEFLESQ 133 (571)
T ss_pred HHHhhhHHHHHHHHHHHHhc
Confidence 99999999999999998863
No 15
>KOG1545|consensus
Probab=98.67 E-value=9.9e-09 Score=94.20 Aligned_cols=88 Identities=25% Similarity=0.419 Sum_probs=73.4
Q ss_pred CCceEEEEECCeEEEeeHHhhcCC-CcchhhhhcCCCccccCCCceEEEcCCCCchHHHhhchhcC-ceecCCCchhHHH
Q psy33 11 PCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDG-QVSLPENPKDVAE 88 (214)
Q Consensus 11 ~~~~V~LNVGG~~F~Ttr~TL~k~-~s~L~~mfs~~~~~~~d~~g~~fIDRdp~~F~~ILnyLR~G-~l~lp~~~~e~~~ 88 (214)
..+.|+|||.|-+|.|...||.++ +++|+.-- .++..-..-..+||+||+..-|..||.|+++| ++.-|.+.. +.-
T Consensus 59 ~~ervvINisGlRFeTql~TL~qfP~TLLGDp~-kR~rfFdplrNEyFFDRnRpSFdaILYyYQSGGRlrRPvnVP-lDi 136 (507)
T KOG1545|consen 59 CCERVVINISGLRFETQLKTLAQFPNTLLGDPA-KRMRFFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVP-LDI 136 (507)
T ss_pred cccEEEEEeccceehHHHHHHhhCchhhcCCHH-HhcccccccchhhcccCCCCccceEEEEeecCceecCCcccc-HHH
Confidence 358999999999999999999999 88887542 23333333568999999999999999999985 788888754 899
Q ss_pred HHHhhcccCchh
Q psy33 89 LLAEAKYYCITE 100 (214)
Q Consensus 89 Ll~EA~fy~L~~ 100 (214)
+++|.+||+|.+
T Consensus 137 F~eEirFyqlG~ 148 (507)
T KOG1545|consen 137 FLEEIRFYQLGD 148 (507)
T ss_pred HHHHHHHHHhhH
Confidence 999999999965
No 16
>KOG3840|consensus
Probab=98.00 E-value=8.4e-06 Score=73.81 Aligned_cols=90 Identities=23% Similarity=0.300 Sum_probs=77.0
Q ss_pred CCCCceEEEEECCeEEEeeHHhhcCC-CcchhhhhcCCCcc-ccCCCceEEEc--CCCCchHHHhhchhcCceecCCCch
Q psy33 9 GNPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEI-LTDSEGWVLID--RCGKHFGIILNFLRDGQVSLPENPK 84 (214)
Q Consensus 9 ~~~~~~V~LNVGG~~F~Ttr~TL~k~-~s~L~~mfs~~~~~-~~d~~g~~fID--Rdp~~F~~ILnyLR~G~l~lp~~~~ 84 (214)
..+.+.+.+-|.|.+|..++..|+.. .+|+..||.+...+ .+++.|+|-+- -...+|+.||+|+.+|.+..|++..
T Consensus 92 pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vS 171 (438)
T KOG3840|consen 92 PGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVS 171 (438)
T ss_pred CCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCc
Confidence 34668999999999999999999999 99999999987764 34677888652 5778999999999999999999864
Q ss_pred hHHHHHHhhcccCch
Q psy33 85 DVAELLAEAKYYCIT 99 (214)
Q Consensus 85 e~~~Ll~EA~fy~L~ 99 (214)
+.+|.+.++|..|.
T Consensus 172 -vpELrEACDYLlip 185 (438)
T KOG3840|consen 172 -VSELREACDYLLVP 185 (438)
T ss_pred -hHHHHhhcceEEee
Confidence 79999999998764
No 17
>KOG4350|consensus
Probab=97.06 E-value=0.0005 Score=64.67 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=60.9
Q ss_pred CCCCCceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEEcCCCCchHHHhhchhcCceecCC
Q psy33 8 SGNPCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPE 81 (214)
Q Consensus 8 ~~~~~~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fIDRdp~~F~~ILnyLR~G~l~lp~ 81 (214)
.+..-..|++-|..++|..+|-.|+...+||++|+-|+|.... +...-+-+-+.++|+.+|.|+++|++.+..
T Consensus 40 ~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~-q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~ 112 (620)
T KOG4350|consen 40 TSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESH-QQLIPLQETNSEAFRALLRYIYTGKIDLAG 112 (620)
T ss_pred hcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhh-hcccccccccHHHHHHHHHHHhhcceeccc
Confidence 3445567999999999999999999999999999999886544 344456677889999999999999988754
No 18
>KOG2075|consensus
Probab=95.34 E-value=0.031 Score=53.50 Aligned_cols=97 Identities=25% Similarity=0.289 Sum_probs=78.8
Q ss_pred CceEEEEEC-----CeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceE-EEcCCCCchHHHhhchhcCceecCCCchh
Q psy33 12 CQYVKLNVG-----GSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWV-LIDRCGKHFGIILNFLRDGQVSLPENPKD 85 (214)
Q Consensus 12 ~~~V~LNVG-----G~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~-fIDRdp~~F~~ILnyLR~G~l~lp~~~~e 85 (214)
..-+++-|| -+.+..+|-.|..-...|.+||.|++.. +..+++ .-|.+|..|...|.|++...+.+-.+ .
T Consensus 114 ~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~--~~s~ei~lpdvepaaFl~~L~flYsdev~~~~d--t 189 (521)
T KOG2075|consen 114 LADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAE--DASLEIRLPDVEPAAFLAFLRFLYSDEVKLAAD--T 189 (521)
T ss_pred cceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCccc--ccCceeecCCcChhHhHHHHHHHhcchhhhhHH--H
Confidence 345677776 3899999999998889999999998753 234555 45799999999999999988776654 4
Q ss_pred HHHHHHhhcccCchhHHHHHHHHHHHh
Q psy33 86 VAELLAEAKYYCITELTDLCEQTIKRK 112 (214)
Q Consensus 86 ~~~Ll~EA~fy~L~~Lv~~c~~~L~~~ 112 (214)
+..++..|+=|....|.+.|-++|++.
T Consensus 190 vi~tl~~AkKY~VpaLer~CVkflr~~ 216 (521)
T KOG2075|consen 190 VITTLYAAKKYLVPALERQCVKFLRKN 216 (521)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 788999999999999999998888753
No 19
>KOG0783|consensus
Probab=91.39 E-value=0.22 Score=50.90 Aligned_cols=94 Identities=19% Similarity=0.265 Sum_probs=65.6
Q ss_pred ceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCc--cccC-------C-CceEEE-cCCCCchHHHhhchhcCceecC-
Q psy33 13 QYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRME--ILTD-------S-EGWVLI-DRCGKHFGIILNFLRDGQVSLP- 80 (214)
Q Consensus 13 ~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~--~~~d-------~-~g~~fI-DRdp~~F~~ILnyLR~G~l~lp- 80 (214)
..|++.|||.+|..++-.|....++|..++-.... +.+| . .-.+|+ |-.|.+|+++|+|+++..+--|
T Consensus 559 hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~~~P~ 638 (1267)
T KOG0783|consen 559 HDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTLLSPW 638 (1267)
T ss_pred ceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccccCCc
Confidence 45899999999999999999999999998865422 1111 1 123444 5899999999999999754323
Q ss_pred --------------CCc----hhHHHHHHhhcccCchhHHHHHH
Q psy33 81 --------------ENP----KDVAELLAEAKYYCITELTDLCE 106 (214)
Q Consensus 81 --------------~~~----~e~~~Ll~EA~fy~L~~Lv~~c~ 106 (214)
.+. ..-++|..-++-|.+.+|....+
T Consensus 639 heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~ 682 (1267)
T KOG0783|consen 639 HEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSV 682 (1267)
T ss_pred cccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhh
Confidence 111 11234777777788877776654
No 20
>KOG4682|consensus
Probab=90.07 E-value=0.28 Score=46.42 Aligned_cols=100 Identities=18% Similarity=0.152 Sum_probs=76.3
Q ss_pred CCCCCceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEE---c--CCCCchHHHhhchhcCceecCCC
Q psy33 8 SGNPCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLI---D--RCGKHFGIILNFLRDGQVSLPEN 82 (214)
Q Consensus 8 ~~~~~~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fI---D--Rdp~~F~~ILnyLR~G~l~lp~~ 82 (214)
.++.+..|.|-.=|..+..++--|.+. .||.+||+|.|.... .+.+=+ | -|...|..++.=|+...+-+..
T Consensus 65 ~q~enSDv~l~alg~eWrlHk~yL~QS-~yf~smf~Gtw~es~--~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l- 140 (488)
T KOG4682|consen 65 LQGENSDVILEALGFEWRLHKPYLFQS-EYFKSMFSGTWKESS--MNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKL- 140 (488)
T ss_pred hcCCCcceehhhccceeeeeeeeeecc-HHHHHHhccccChhh--CceEEEEcCCCcccHHHHHHHHhhhhhhheeccH-
Confidence 356677788999999999998887664 599999999875422 122211 1 2456788888888888887654
Q ss_pred chhHHHHHHhhcccCchhHHHHHHHHHHHh
Q psy33 83 PKDVAELLAEAKYYCITELTDLCEQTIKRK 112 (214)
Q Consensus 83 ~~e~~~Ll~EA~fy~L~~Lv~~c~~~L~~~ 112 (214)
..+..+++.|-++++++|++.|-+.+-+.
T Consensus 141 -~dv~gvlAaA~~lqldgl~qrC~evMie~ 169 (488)
T KOG4682|consen 141 -SDVVGVLAAACLLQLDGLIQRCGEVMIET 169 (488)
T ss_pred -HHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 35899999999999999999998887653
No 21
>KOG4591|consensus
Probab=89.71 E-value=0.35 Score=42.07 Aligned_cols=93 Identities=18% Similarity=0.206 Sum_probs=66.6
Q ss_pred ceEEEEECC---eEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEEcCCCCchHHHhhchhcCceecCCCchhHHHH
Q psy33 13 QYVKLNVGG---SLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAEL 89 (214)
Q Consensus 13 ~~V~LNVGG---~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fIDRdp~~F~~ILnyLR~G~l~lp~~~~e~~~L 89 (214)
..+++.||| +....++-.|... |=++.+..|..+ + ...-..=|-||++|...+.|+++..+.+..+-.-+.++
T Consensus 67 SDlk~K~~gns~k~i~AHKfVLAAR-sD~WkfaN~~de--k-se~~~~dDad~Ea~~t~iRWIYTDEidfk~dD~~L~el 142 (280)
T KOG4591|consen 67 SDLKFKFAGNSDKHIPAHKFVLAAR-SDFWKFANGGDE--K-SEELDLDDADFEAFHTAIRWIYTDEIDFKEDDEFLLEL 142 (280)
T ss_pred cceeEEecCCccccCchhhhhhhhh-cchhhhccCCCc--c-hhhhcccccCHHHHHHhheeeeccccccccchHHHHHH
Confidence 468889996 4566777777765 112233222211 0 11223447899999999999999999988766668999
Q ss_pred HHhhcccCchhHHHHHHHHH
Q psy33 90 LAEAKYYCITELTDLCEQTI 109 (214)
Q Consensus 90 l~EA~fy~L~~Lv~~c~~~L 109 (214)
.+-|.-|+|+-|.+.|..-+
T Consensus 143 ~e~An~FqLe~Lke~C~k~l 162 (280)
T KOG4591|consen 143 CELANRFQLELLKERCEKGL 162 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887554
No 22
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=66.14 E-value=6 Score=36.32 Aligned_cols=89 Identities=12% Similarity=0.126 Sum_probs=66.0
Q ss_pred eEEEeeHHhhcCCCcchhhhhcCCCc-cccCCCceEEEcCCCCchHHHhhchhcCceecCCCchhHHHHHHhhcccCchh
Q psy33 22 SLHYTTIGTLTKHDTMLRAMFSGRME-ILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITE 100 (214)
Q Consensus 22 ~~F~Ttr~TL~k~~s~L~~mfs~~~~-~~~d~~g~~fIDRdp~~F~~ILnyLR~G~l~lp~~~~e~~~Ll~EA~fy~L~~ 100 (214)
+.|...+..|.+.-.||+..++.... ...-+.-.+-+--|-..|+=+++|.....-.|.++ ++-.++--++|.++++
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~--NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPS--NVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcC--cEEEeEehhhhhccHH
Confidence 58999999999998899998854110 11112345666789999999999999855545433 4577888899999999
Q ss_pred HHHHHHHHHHHh
Q psy33 101 LTDLCEQTIKRK 112 (214)
Q Consensus 101 Lv~~c~~~L~~~ 112 (214)
|++.|-..+.+.
T Consensus 92 Lve~cl~y~~~~ 103 (317)
T PF11822_consen 92 LVEECLQYCHDH 103 (317)
T ss_pred HHHHHHHHHHHh
Confidence 999887776543
No 23
>KOG3473|consensus
Probab=61.92 E-value=14 Score=28.66 Aligned_cols=86 Identities=21% Similarity=0.222 Sum_probs=59.3
Q ss_pred CCCCCceEEEEEC-CeEEEeeHHhhcCCCcchhhhhcCCCccccC-CCceEEEcCCCCchHHHhhchhcC-----c----
Q psy33 8 SGNPCQYVKLNVG-GSLHYTTIGTLTKHDTMLRAMFSGRMEILTD-SEGWVLIDRCGKHFGIILNFLRDG-----Q---- 76 (214)
Q Consensus 8 ~~~~~~~V~LNVG-G~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d-~~g~~fIDRdp~~F~~ILnyLR~G-----~---- 76 (214)
-++.+++|+|--+ |+.|...|+.-.- +.-+++|++|....... .+..+|-|-+..+.+.+-.||... .
T Consensus 12 egp~~~yVkLvS~Ddhefiikre~Amt-SgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~ei 90 (112)
T KOG3473|consen 12 EGPDSMYVKLVSSDDHEFIIKREHAMT-SGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEI 90 (112)
T ss_pred cCcchhheEeecCCCcEEEEeehhhhh-hhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccC
Confidence 3667789998776 7999999875433 45688999876543332 345678888888888887777532 1
Q ss_pred --eecCCCchhHHHHHHhhccc
Q psy33 77 --VSLPENPKDVAELLAEAKYY 96 (214)
Q Consensus 77 --l~lp~~~~e~~~Ll~EA~fy 96 (214)
.++|+++ ..+|+..|+|.
T Consensus 91 PeF~Ippem--aleLL~aAn~L 110 (112)
T KOG3473|consen 91 PEFDIPPEM--ALELLMAANYL 110 (112)
T ss_pred CCCCCCHHH--HHHHHHHhhhh
Confidence 2356654 47888888875
No 24
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=59.02 E-value=1e+02 Score=25.39 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=50.2
Q ss_pred ceeeeeccCHHHHHHHHhcCCC--CEEEEEEEeeCCeeEeeccChhHHhhhhcccceeeeeecceEEEEe-ecc------
Q psy33 119 ICRVPLITSLKEEQLLLNATAK--PVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIK-DVI------ 189 (214)
Q Consensus 119 ~~~v~~i~~~~e~~~~i~~~~k--~~~~~~~~~~~~~ysy~~~~~~~~l~n~e~fd~l~~~~~~~v~~~k-~~~------ 189 (214)
...+.-|++.++..+.|..+.+ +||..+|... ...-..+. ..+++|+-.|. .|.|+| |+-
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~w--------c~~Ck~m~--~~l~~LA~~~~-~vkF~kVd~d~~~l~~ 129 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPG--------IPGCAALN--SSLLCLAAEYP-AVKFCKIRASATGASD 129 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCC--------CchHHHHH--HHHHHHHHHCC-CeEEEEEeccchhhHH
Confidence 3445556776777777766543 6666554321 11112233 36777877775 588988 443
Q ss_pred --CCCceeeeEEeeCceeEeEEe
Q psy33 190 --GSSEICCWSFFGHGKKIAEVC 210 (214)
Q Consensus 190 --~~~~~~~~~~~~~~~~~~~~~ 210 (214)
+-.-+++.-+|=.|+.+..+-
T Consensus 130 ~f~v~~vPTlllyk~G~~v~~~v 152 (175)
T cd02987 130 EFDTDALPALLVYKGGELIGNFV 152 (175)
T ss_pred hCCCCCCCEEEEEECCEEEEEEe
Confidence 334688999999999887664
No 25
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=58.34 E-value=12 Score=27.92 Aligned_cols=55 Identities=7% Similarity=0.111 Sum_probs=38.2
Q ss_pred CCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEE-cCCCCchHHHhhchhcCc
Q psy33 20 GGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLI-DRCGKHFGIILNFLRDGQ 76 (214)
Q Consensus 20 GG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fI-DRdp~~F~~ILnyLR~G~ 76 (214)
.|+.|.+++..... +..++.|+++.... ...+..+-+ ..++..++.|+.|+....
T Consensus 10 Dg~~f~v~~~~a~~-S~~i~~~l~~~~~~-~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~ 65 (104)
T smart00512 10 DGEVFEVEREVARQ-SKTIKAMIEDLGVD-DENNNPIPLPNVTSKILSKVIEYCEHHV 65 (104)
T ss_pred CCCEEEecHHHHHH-HHHHHHHHHccCcc-cCCCCCccCCCcCHHHHHHHHHHHHHcc
Confidence 48999999997753 56778887643211 111235655 489999999999998754
No 26
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=56.77 E-value=20 Score=27.31 Aligned_cols=61 Identities=18% Similarity=0.175 Sum_probs=46.1
Q ss_pred CCCceEEEEECC--eEEEeeHHhhcCCCcchhhhhcCCCc-cccCCCceEEEcCCCCchHHHhhch
Q psy33 10 NPCQYVKLNVGG--SLHYTTIGTLTKHDTMLRAMFSGRME-ILTDSEGWVLIDRCGKHFGIILNFL 72 (214)
Q Consensus 10 ~~~~~V~LNVGG--~~F~Ttr~TL~k~~s~L~~mfs~~~~-~~~d~~g~~fIDRdp~~F~~ILnyL 72 (214)
.+...+.+-||. ++|....+-|.. +.|..++....+ .-.+.+|.+.|..|...|++||..|
T Consensus 36 vp~G~~~VyVG~~~~Rfvvp~~~L~h--p~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~l 99 (100)
T PF02519_consen 36 VPKGHFAVYVGEERRRFVVPVSYLNH--PLFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLL 99 (100)
T ss_pred CCCCeEEEEeCccceEEEechHHcCc--hhHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHh
Confidence 356789999996 799999888865 577777653221 2234579999999999999999876
No 27
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=52.60 E-value=16 Score=26.11 Aligned_cols=31 Identities=32% Similarity=0.468 Sum_probs=25.5
Q ss_pred chhHHHHHHhhcccCchhHHHHHHHHHHHhh
Q psy33 83 PKDVAELLAEAKYYCITELTDLCEQTIKRKQ 113 (214)
Q Consensus 83 ~~e~~~Ll~EA~fy~L~~Lv~~c~~~L~~~~ 113 (214)
...+-.|+..|.|++|.+|.+.|...+...-
T Consensus 13 ~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i 43 (78)
T PF01466_consen 13 NDELFDLLNAANYLDIKGLLDLCCKYIANMI 43 (78)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHh
Confidence 3468899999999999999999988887644
No 28
>KOG0783|consensus
Probab=49.26 E-value=8.2 Score=40.06 Aligned_cols=95 Identities=25% Similarity=0.362 Sum_probs=56.5
Q ss_pred CceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEEcC---CCCchHHHhhchh-cCceecCCCchh--
Q psy33 12 CQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDR---CGKHFGIILNFLR-DGQVSLPENPKD-- 85 (214)
Q Consensus 12 ~~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fIDR---dp~~F~~ILnyLR-~G~l~lp~~~~e-- 85 (214)
+-.|++. .|+.|..++--|.....||..||+.-|- +...+-..- ..++...||+||+ +.+..+-++..+
T Consensus 712 d~~i~~K-DGkvl~aHkc~L~aRlEYF~smf~~~w~----E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~d 786 (1267)
T KOG0783|consen 712 DTVIKLK-DGKVLKAHKCFLSARLEYFSSMFQFVWM----ESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESD 786 (1267)
T ss_pred eEEEEec-CCcCcccceeEeeeHHHHHHHHHHHHHh----hhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhh
Confidence 3456666 8999999998888887899999874332 111122222 3589999999999 444443332211
Q ss_pred -HHHHHHhhcccCchhHHHHHHHHHHH
Q psy33 86 -VAELLAEAKYYCITELTDLCEQTIKR 111 (214)
Q Consensus 86 -~~~Ll~EA~fy~L~~Lv~~c~~~L~~ 111 (214)
+-+++-=|+=|-|.+|.+.|+..|-+
T Consensus 787 F~~~il~iaDqlli~~Lk~Ice~~ll~ 813 (1267)
T KOG0783|consen 787 FMFEILSIADQLLILELKSICEQSLLR 813 (1267)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12233334445556666666655543
No 29
>KOG0907|consensus
Probab=46.08 E-value=20 Score=27.45 Aligned_cols=66 Identities=24% Similarity=0.351 Sum_probs=46.4
Q ss_pred hcCCCCEEEEEEEeeCCeeEeeccChhHHhhhhcccceeeeeecceEEEEe-eccC---------CCceeeeEEeeCcee
Q psy33 136 NATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIK-DVIG---------SSEICCWSFFGHGKK 205 (214)
Q Consensus 136 ~~~~k~~~~~~~~~~~~~ysy~~~~~~~~l~n~e~fd~l~~~~~~~v~~~k-~~~~---------~~~~~~~~~~~~~~~ 205 (214)
...+|+++.-.|.. .-..-..++ ..|++|+.+|+. +.|+| ||.. -.-.+.-.||=.|++
T Consensus 18 ~~~~kliVvdF~a~--------wCgPCk~i~--P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~ 86 (106)
T KOG0907|consen 18 EAGDKLVVVDFYAT--------WCGPCKAIA--PKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEE 86 (106)
T ss_pred hCCCCeEEEEEECC--------CCcchhhhh--hHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEE
Confidence 33457766644321 123333455 689999999999 99998 7763 225678999999999
Q ss_pred EeEEeee
Q psy33 206 IAEVCCT 212 (214)
Q Consensus 206 ~~~~~~~ 212 (214)
+.++-+.
T Consensus 87 ~~~~vGa 93 (106)
T KOG0907|consen 87 VDEVVGA 93 (106)
T ss_pred EEEEecC
Confidence 9998764
No 30
>KOG1724|consensus
Probab=43.67 E-value=82 Score=26.14 Aligned_cols=97 Identities=18% Similarity=0.262 Sum_probs=62.1
Q ss_pred ceEEEEE-CCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceE-EEcCCCCchHHHhhchhcCcee------------
Q psy33 13 QYVKLNV-GGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWV-LIDRCGKHFGIILNFLRDGQVS------------ 78 (214)
Q Consensus 13 ~~V~LNV-GG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~-fIDRdp~~F~~ILnyLR~G~l~------------ 78 (214)
..++|-- .|+.|.+...+..+. ..+..++... .. .+++..+ +--..+..|..|+.|...-+-.
T Consensus 5 ~~ikL~SsDG~~f~ve~~~a~~s-~~i~~~~~~~-~~-~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~ 81 (162)
T KOG1724|consen 5 KKIKLESSDGEIFEVEEEVARQS-QTISAHMIED-GC-ADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPE 81 (162)
T ss_pred CeEEEEccCCceeehhHHHHHHh-HHHHHHHHHc-CC-CccCCccccCccCHHHHHHHHHHHHHcccccccccccccccc
Confidence 4445444 489999999888765 3445554321 01 1111123 2237899999999999984422
Q ss_pred ---cCC--------CchhHHHHHHhhcccCchhHHHHHHHHHHHh
Q psy33 79 ---LPE--------NPKDVAELLAEAKYYCITELTDLCEQTIKRK 112 (214)
Q Consensus 79 ---lp~--------~~~e~~~Ll~EA~fy~L~~Lv~~c~~~L~~~ 112 (214)
+|. +...+-.|..+|.|..+.+|.+.+...+...
T Consensus 82 ~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~m 126 (162)
T KOG1724|consen 82 ETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANM 126 (162)
T ss_pred cCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHH
Confidence 110 1235678899999999999999987776553
No 31
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=42.12 E-value=77 Score=25.89 Aligned_cols=92 Identities=17% Similarity=0.135 Sum_probs=55.5
Q ss_pred eEEEEECCeEEEeeH-----HhhcCCCcchhhhhcCCCccccCCCceEEEcCCCCchHHHhhchhcCceecCCC------
Q psy33 14 YVKLNVGGSLHYTTI-----GTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPEN------ 82 (214)
Q Consensus 14 ~V~LNVGG~~F~Ttr-----~TL~k~~s~L~~mfs~~~~~~~d~~g~~fIDRdp~~F~~ILnyLR~G~l~lp~~------ 82 (214)
+.-.-..|..|.+.. +.|.+ .||..+-..+.+ -........+|..|+.|+.+.+-.+.++
T Consensus 4 i~l~s~dge~F~vd~~iAerSiLik--N~l~d~~~~n~p-------~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~ 74 (158)
T COG5201 4 IELESIDGEIFRVDENIAERSILIK--NMLCDSTACNYP-------IPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEI 74 (158)
T ss_pred eEEEecCCcEEEehHHHHHHHHHHH--HHhccccccCCC-------CcccchhHHHHHHHHHHHHhccccCCCccChHhh
Confidence 334456699998874 33333 344443322222 1233446678999999988754333221
Q ss_pred -------c----------hhHHHHHHhhcccCchhHHHHHHHHHHHhhc
Q psy33 83 -------P----------KDVAELLAEAKYYCITELTDLCEQTIKRKQR 114 (214)
Q Consensus 83 -------~----------~e~~~Ll~EA~fy~L~~Lv~~c~~~L~~~~~ 114 (214)
. ..+-++.-.|.|..+.+|.++|++.+.+.-.
T Consensus 75 rks~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemir 123 (158)
T COG5201 75 RKSKPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR 123 (158)
T ss_pred hccCCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence 1 1244566689999999999999887766443
No 32
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=37.27 E-value=13 Score=27.95 Aligned_cols=19 Identities=32% Similarity=0.296 Sum_probs=16.3
Q ss_pred cCCCCchHHHhhchhcCce
Q psy33 59 DRCGKHFGIILNFLRDGQV 77 (214)
Q Consensus 59 DRdp~~F~~ILnyLR~G~l 77 (214)
.-||++|+.||+.||.+.-
T Consensus 40 ~~dp~VFriildLL~~nVs 58 (88)
T PF12926_consen 40 PMDPEVFRIILDLLRLNVS 58 (88)
T ss_pred CcChHHHHHHHHHHHcCCC
Confidence 4599999999999998654
No 33
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=36.11 E-value=1.6e+02 Score=21.73 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=44.8
Q ss_pred eeeccCHHHHHHHHhcC--CCCEEEEEEEeeCCeeEeeccChhHHhhhhcccceeeeeecceEEEEe-ecc--------C
Q psy33 122 VPLITSLKEEQLLLNAT--AKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIK-DVI--------G 190 (214)
Q Consensus 122 v~~i~~~~e~~~~i~~~--~k~~~~~~~~~~~~~ysy~~~~~~~~l~n~e~fd~l~~~~~~~v~~~k-~~~--------~ 190 (214)
+..+++ ++..+.|... ++|++..+|... .... ..+. ..+++|+-.+.+ +.|+| |+- |
T Consensus 6 v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~------c~~C--~~l~--~~l~~la~~~~~-v~f~~vd~~~~~l~~~~~ 73 (113)
T cd02957 6 VREISS-KEFLEEVTKASKGTRVVVHFYEPG------FPRC--KILD--SHLEELAAKYPE-TKFVKINAEKAFLVNYLD 73 (113)
T ss_pred EEEEcH-HHHHHHHHccCCCCEEEEEEeCCC------CCcH--HHHH--HHHHHHHHHCCC-cEEEEEEchhhHHHHhcC
Confidence 444555 5656666655 377777665432 1111 1122 366666666654 56676 443 3
Q ss_pred CCceeeeEEeeCceeEeEEe
Q psy33 191 SSEICCWSFFGHGKKIAEVC 210 (214)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~ 210 (214)
-..++..-+|-+|+.+..+.
T Consensus 74 i~~~Pt~~~f~~G~~v~~~~ 93 (113)
T cd02957 74 IKVLPTLLVYKNGELIDNIV 93 (113)
T ss_pred CCcCCEEEEEECCEEEEEEe
Confidence 34678888999998887653
No 34
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=32.48 E-value=50 Score=22.42 Aligned_cols=55 Identities=11% Similarity=0.179 Sum_probs=34.9
Q ss_pred EEEEE-CCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEE-cCCCCchHHHhhchhc
Q psy33 15 VKLNV-GGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLI-DRCGKHFGIILNFLRD 74 (214)
Q Consensus 15 V~LNV-GG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fI-DRdp~~F~~ILnyLR~ 74 (214)
|+|-- +|+.|.+.+..+.. ...++.|+.+.. +.+..+-+ +-++..++.|+.|+..
T Consensus 3 v~L~SsDg~~f~V~~~~a~~-S~~i~~ml~~~~----~~~~~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAKQ-SKTIKNMLEDLG----DEDEPIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHTT-SHHHHHHHHCTC----CCGTEEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHHH-hHHHHHHHhhhc----ccccccccCccCHHHHHHHHHHHHh
Confidence 34433 38999999988765 466788876421 11123433 5788888888888754
No 35
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=32.15 E-value=1.3e+02 Score=20.78 Aligned_cols=67 Identities=21% Similarity=0.345 Sum_probs=36.0
Q ss_pred HHHHHHhcCCCCEEEEEEEeeCCeeEeeccChhHHhhhhcccceeeeeecceEEEEe-ecc---------CCCceeeeEE
Q psy33 130 EEQLLLNATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIK-DVI---------GSSEICCWSF 199 (214)
Q Consensus 130 e~~~~i~~~~k~~~~~~~~~~~~~ysy~~~~~~~~l~n~e~fd~l~~~~~~~v~~~k-~~~---------~~~~~~~~~~ 199 (214)
+..+.+...+++++..+++.. +.+. ..++ +.|.++.-.+++++.|++ |.. |-...+..-|
T Consensus 5 ~~~~~~~~~~~~vvi~f~~~~-C~~C------~~~~---~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~ 74 (101)
T TIGR01068 5 NFDETIASSDKPVLVDFWAPW-CGPC------KMIA---PILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLL 74 (101)
T ss_pred HHHHHHhhcCCcEEEEEECCC-CHHH------HHhC---HHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEE
Confidence 344555555667777665431 2111 1111 245566556677777776 543 2235677777
Q ss_pred eeCceeE
Q psy33 200 FGHGKKI 206 (214)
Q Consensus 200 ~~~~~~~ 206 (214)
|-.|+.+
T Consensus 75 ~~~g~~~ 81 (101)
T TIGR01068 75 FKNGKEV 81 (101)
T ss_pred EeCCcEe
Confidence 7666554
No 36
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=31.23 E-value=1.6e+02 Score=20.56 Aligned_cols=71 Identities=20% Similarity=0.300 Sum_probs=38.5
Q ss_pred HHHHHHHhcC-CCCEEEEEEEeeCCeeEeeccChhHHhhhhcccceeeeeecceEEEEe-ecc---------CCCceeee
Q psy33 129 KEEQLLLNAT-AKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIK-DVI---------GSSEICCW 197 (214)
Q Consensus 129 ~e~~~~i~~~-~k~~~~~~~~~~~~~ysy~~~~~~~~l~n~e~fd~l~~~~~~~v~~~k-~~~---------~~~~~~~~ 197 (214)
++..+++... +++++..++... ..... +-.+.+++++-.+++.+.|++ |.- |-...+++
T Consensus 3 ~~~~~~~~~~~~~~v~v~f~~~~------C~~C~----~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~ 72 (97)
T cd02984 3 EEFEELLKSDASKLLVLHFWAPW------AEPCK----QMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTF 72 (97)
T ss_pred HHHHHHHhhCCCCEEEEEEECCC------CHHHH----HHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEE
Confidence 3444555554 566666555421 11111 112355566555566777776 433 22356788
Q ss_pred EEeeCceeEeEE
Q psy33 198 SFFGHGKKIAEV 209 (214)
Q Consensus 198 ~~~~~~~~~~~~ 209 (214)
-||-+|+.+..+
T Consensus 73 ~~~~~g~~~~~~ 84 (97)
T cd02984 73 VFFRNGTIVDRV 84 (97)
T ss_pred EEEECCEEEEEE
Confidence 999888776543
No 37
>PF10065 DUF2303: Uncharacterized conserved protein (DUF2303); InterPro: IPR019276 This entry is represented by Bacteriiophage VT2phi_272, P20. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=28.61 E-value=3.8e+02 Score=23.94 Aligned_cols=114 Identities=16% Similarity=0.211 Sum_probs=69.0
Q ss_pred CCCceEEEcCCCCchHHHhhchhcCc---------eecCCCchhHHHHHH-hhcccCchhHHHHHHHHHHHhhcCCCCce
Q psy33 51 DSEGWVLIDRCGKHFGIILNFLRDGQ---------VSLPENPKDVAELLA-EAKYYCITELTDLCEQTIKRKQRETEPIC 120 (214)
Q Consensus 51 d~~g~~fIDRdp~~F~~ILnyLR~G~---------l~lp~~~~e~~~Ll~-EA~fy~L~~Lv~~c~~~L~~~~~~~~p~~ 120 (214)
+++..+|+|.|..-+..|+||--.+. +.+|.+ .+++.+.. .-+...=.++.+++++++..-.. ..
T Consensus 78 ~~~s~iFid~d~~~~~ai~d~~~~~~pg~~dh~A~l~l~~T-~e~k~w~~~~g~~~~Q~efAefLEd~~~~I~~-~~--- 152 (276)
T PF10065_consen 78 DEGSQIFIDADKMSATAIFDYHTADAPGHGDHRATLTLPKT-AEWKAWLAIDGKKLSQKEFAEFLEDWAHDIVA-FS--- 152 (276)
T ss_pred CCCceEEEECCCCeEEEEEcCCCCCCCCccceeEEEeCCCC-HHHHHHHHhcCCcCCHHHHHHHHHhhHHhhhc-cC---
Confidence 46788999999999999999985542 345654 45676665 33444445677777777664331 01
Q ss_pred eeeeccCHHHHHHH---HhcCCCCEEEEEEEeeC--CeeEeeccChhHHhhh---hccccee
Q psy33 121 RVPLITSLKEEQLL---LNATAKPVVKLLINRHN--NKYSYTSTSDDNLLKN---IELFDKL 174 (214)
Q Consensus 121 ~v~~i~~~~e~~~~---i~~~~k~~~~~~~~~~~--~~ysy~~~~~~~~l~n---~e~fd~l 174 (214)
.+..+.+.+ +...++-.++--.+..+ ..++|.....+.--.+ +.++..+
T Consensus 153 -----~~~~ellei~~a~~a~r~~~fks~~r~~~g~~~f~~~~~~~~~~~~~~~~l~~P~~f 209 (276)
T PF10065_consen 153 -----PDAAELLEIAQALQAVRKITFKSATRLDDGEVQFSYSESVMESAEAKSKELKMPEEF 209 (276)
T ss_pred -----CchHHHHHHHHHhhheEeeEEEEEEeeccCceeEEEEeehhhhhccccccCCCCceE
Confidence 122343333 34456666776665443 4667776664455555 5566543
No 38
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=25.58 E-value=58 Score=29.50 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=19.2
Q ss_pred eEEEc----CCCCchHHHhhchhcCcee
Q psy33 55 WVLID----RCGKHFGIILNFLRDGQVS 78 (214)
Q Consensus 55 ~~fID----Rdp~~F~~ILnyLR~G~l~ 78 (214)
-+.|. .||..|+.|.+|++.|...
T Consensus 220 gVmiGR~~l~nP~if~~~~~~~~~~~~~ 247 (321)
T PRK10415 220 ALMIGRAAQGRPWIFREIQHYLDTGELL 247 (321)
T ss_pred EEEEChHhhcCChHHHHHHHHHhCCCCC
Confidence 45666 4899999999999988753
No 39
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=23.73 E-value=67 Score=26.93 Aligned_cols=106 Identities=11% Similarity=0.107 Sum_probs=57.1
Q ss_pred CCCchHHHhhchhcCceecC---CCchhHHHHHHhhcccCchhHHHHHHHHHHHhhcCCCCceeeeeccCHHHHH-HHHh
Q psy33 61 CGKHFGIILNFLRDGQVSLP---ENPKDVAELLAEAKYYCITELTDLCEQTIKRKQRETEPICRVPLITSLKEEQ-LLLN 136 (214)
Q Consensus 61 dp~~F~~ILnyLR~G~l~lp---~~~~e~~~Ll~EA~fy~L~~Lv~~c~~~L~~~~~~~~p~~~v~~i~~~~e~~-~~i~ 136 (214)
|++.++.+..+.+...+++- ++...+.+---+++|+++..+..++.+-=-.--+-+...-.|-++-+-.-.. |+++
T Consensus 48 dee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w~G~dg~g~yDlviflG~~~yy~sq~Ls 127 (170)
T COG1880 48 DEELLELAVKIIEKFNIPIVATASSMGNLIGRGIGSEYINLHAITQYLTDPNWPGFDGNGNYDLVIFLGSIYYYLSQVLS 127 (170)
T ss_pred CHHHHHHHHHHHHhcCCceEecchhhcchhhcccccchhHHHHHHHHhcCCCCCCcCCCCCcceEEEEeccHHHHHHHHH
Confidence 89999999999999877642 2222222222258888888888754321000000011111122232222221 3333
Q ss_pred c---CCCCEEEEEE---EeeCCeeEeeccChhHHhhh
Q psy33 137 A---TAKPVVKLLI---NRHNNKYSYTSTSDDNLLKN 167 (214)
Q Consensus 137 ~---~~k~~~~~~~---~~~~~~ysy~~~~~~~~l~n 167 (214)
. -+ .+..+-+ ...|-.||+++.+.|++++.
T Consensus 128 ~lKhFs-~i~tiaId~~Y~pnAd~SFpNl~kde~~~~ 163 (170)
T COG1880 128 GLKHFS-NIKTIAIDRYYQPNADYSFPNLSKDEYLAY 163 (170)
T ss_pred Hhhhhh-cceEEEeccccCcCccccCCCcCHHHHHHH
Confidence 2 12 3444444 34588999999999998873
No 40
>PF11385 DUF3189: Protein of unknown function (DUF3189); InterPro: IPR021525 This family of proteins with unknown function appears to be restricted to Firmicutes
Probab=23.38 E-value=64 Score=26.30 Aligned_cols=30 Identities=37% Similarity=0.602 Sum_probs=25.7
Q ss_pred HhhhhcccceeeeeecceEEEEe-eccCCCce
Q psy33 164 LLKNIELFDKLALRFSGRLLFIK-DVIGSSEI 194 (214)
Q Consensus 164 ~l~n~e~fd~l~~~~~~~v~~~k-~~~~~~~~ 194 (214)
-+.++..||++.-.=.|++.|+. |..| |++
T Consensus 34 el~~lp~fd~~~~~d~G~l~y~G~De~g-n~V 64 (148)
T PF11385_consen 34 ELLSLPYFDKLEKEDIGRLIYMGTDEYG-NEV 64 (148)
T ss_pred HHhCChhhcCCCcCcCceEEEEEEcCCC-CEE
Confidence 36779999999999999999995 9998 665
No 41
>PRK14751 tetracycline resistance determinant leader peptide; Provisional
Probab=22.03 E-value=41 Score=19.75 Aligned_cols=10 Identities=30% Similarity=0.993 Sum_probs=8.3
Q ss_pred CceeeeEEee
Q psy33 192 SEICCWSFFG 201 (214)
Q Consensus 192 ~~~~~~~~~~ 201 (214)
..||-|-||.
T Consensus 15 ksi~hwdf~~ 24 (28)
T PRK14751 15 KSIYHWDFYA 24 (28)
T ss_pred Cceeeeeehh
Confidence 4799999985
No 42
>PF09857 DUF2084: Uncharacterized protein conserved in bacteria (DUF2084); InterPro: IPR018654 This domain is found in various hypothetical bacterial proteins that have no known function.
Probab=21.16 E-value=1.1e+02 Score=22.82 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=17.0
Q ss_pred ecceEEEEeeccCCCceeeeEEeeCceeEeEEeee
Q psy33 178 FSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCT 212 (214)
Q Consensus 178 ~~~~v~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (214)
=.|||.+.||--| ||++|-|-
T Consensus 16 qGG~I~~~rd~~g--------------ri~~v~C~ 36 (85)
T PF09857_consen 16 QGGRIRHERDDSG--------------RITAVECY 36 (85)
T ss_pred cCCeEEEEECCCC--------------CEEEEEEE
Confidence 5899999998877 67777774
No 43
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=20.92 E-value=67 Score=23.07 Aligned_cols=69 Identities=12% Similarity=0.067 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCCCEEEEEEEeeCCeeEeeccChhHHhhhhcccceeeeeecceEEEEe-eccCCC---------ceeee
Q psy33 128 LKEEQLLLNATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIK-DVIGSS---------EICCW 197 (214)
Q Consensus 128 ~~e~~~~i~~~~k~~~~~~~~~~~~~ysy~~~~~~~~l~n~e~fd~l~~~~~~~v~~~k-~~~~~~---------~~~~~ 197 (214)
.++..+++..+++|++...|... ..... .+ ...|++++-.+.|.+.|++ |.-... .++..
T Consensus 8 ~~~f~~~i~~~~~~v~v~f~a~w------C~~C~-~~---~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~ 77 (104)
T cd03004 8 PEDFPELVLNRKEPWLVDFYAPW------CGPCQ-AL---LPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTI 77 (104)
T ss_pred HHHHHHHHhcCCCeEEEEEECCC------CHHHH-HH---HHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEE
Confidence 34445666667777777665421 11111 11 1366667666777888876 544322 34556
Q ss_pred EEeeCc-eeE
Q psy33 198 SFFGHG-KKI 206 (214)
Q Consensus 198 ~~~~~~-~~~ 206 (214)
-+|-.| +++
T Consensus 78 ~~~~~g~~~~ 87 (104)
T cd03004 78 RLYPGNASKY 87 (104)
T ss_pred EEEcCCCCCc
Confidence 677666 443
No 44
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=20.87 E-value=51 Score=24.42 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=14.5
Q ss_pred EEEcCCCCchHHHhhchhcCc
Q psy33 56 VLIDRCGKHFGIILNFLRDGQ 76 (214)
Q Consensus 56 ~fIDRdp~~F~~ILnyLR~G~ 76 (214)
-+||+|| +|..++.|.|..+
T Consensus 5 PvId~dP-~f~rVv~~~R~sD 24 (86)
T PF10785_consen 5 PVIDSDP-HFKRVVRYFRPSD 24 (86)
T ss_pred CccCCCC-CHHHHHHhCCHHH
Confidence 3799999 5666678877643
No 45
>PLN02975 complex I subunit
Probab=20.49 E-value=60 Score=24.88 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=18.9
Q ss_pred CCceEEEcCCCCchHHHhhchhcCc
Q psy33 52 SEGWVLIDRCGKHFGIILNFLRDGQ 76 (214)
Q Consensus 52 ~~g~~fIDRdp~~F~~ILnyLR~G~ 76 (214)
+...-+||+|| ||..++.|+|...
T Consensus 7 ~P~YPlId~dP-~f~rVv~yfr~sD 30 (97)
T PLN02975 7 KPEYPVVDRNP-TFTKVVGNFSALD 30 (97)
T ss_pred CCCCCccCCCC-ChHHHHHhCCHHH
Confidence 33455899999 8999999999754
Done!