Query psy33
Match_columns 214
No_of_seqs 240 out of 1168
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 21:28:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy33.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/33hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3drx_A BTB/POZ domain-containi 100.0 6.1E-41 2.1E-45 283.5 13.1 172 7-182 6-185 (202)
2 3drz_A BTB/POZ domain-containi 100.0 2.5E-31 8.6E-36 203.7 9.3 102 9-111 2-106 (107)
3 3kvt_A Potassium channel prote 100.0 5.6E-29 1.9E-33 193.6 6.2 102 11-114 3-107 (115)
4 1s1g_A Potassium voltage-gated 100.0 1.2E-28 4.2E-33 194.0 7.7 111 1-114 1-114 (124)
5 1t1d_A Protein (potassium chan 99.9 2E-27 7E-32 180.6 8.4 88 13-102 1-90 (100)
6 1nn7_A Potassium channel KV4.2 99.9 1.4E-27 4.8E-32 182.8 6.9 97 14-113 1-100 (105)
7 2nz0_B Potassium voltage-gated 99.9 1.4E-27 4.7E-32 191.7 6.6 104 8-114 30-136 (140)
8 2r9r_B Paddle chimera voltage 99.8 7E-21 2.4E-25 179.7 7.0 91 10-102 49-141 (514)
9 1r29_A B-cell lymphoma 6 prote 99.4 1.1E-12 3.9E-17 100.6 6.9 98 10-112 27-126 (127)
10 2vpk_A Myoneurin; transcriptio 99.3 3.8E-12 1.3E-16 96.2 6.2 92 11-110 21-115 (116)
11 2vkp_A BTB/POZ domain-containi 99.3 8.8E-12 3E-16 92.8 7.2 97 10-111 6-107 (109)
12 3b84_A Zinc finger and BTB dom 99.3 4.3E-12 1.5E-16 96.7 4.9 95 11-112 23-117 (119)
13 2if5_A Zinc finger and BTB dom 99.2 5.1E-12 1.8E-16 95.9 4.9 96 10-109 23-119 (120)
14 2ppi_A Gigaxonin; BTB domain, 99.2 5.6E-12 1.9E-16 99.7 4.7 97 11-109 46-143 (144)
15 2yy9_A Zinc finger and BTB dom 99.2 6.3E-12 2.2E-16 98.1 3.7 96 11-113 24-119 (135)
16 1buo_A POZ domain, protein (pr 99.2 2.1E-11 7E-16 93.1 5.9 93 11-111 27-119 (121)
17 2z8h_A Transcription regulator 99.2 2E-11 6.9E-16 95.3 4.8 94 12-111 36-131 (138)
18 3ga1_A Nucleus accumbens-assoc 99.2 8.5E-12 2.9E-16 96.2 2.2 92 12-111 33-126 (129)
19 3htm_A Speckle-type POZ protei 99.1 5.2E-11 1.8E-15 94.8 6.2 96 13-112 35-131 (172)
20 2ihc_A Transcription regulator 99.1 8.2E-12 2.8E-16 95.8 0.3 93 12-110 29-123 (124)
21 3hve_A Gigaxonin; ubiquitin, c 99.1 1.2E-10 4E-15 99.1 7.4 102 9-112 28-130 (256)
22 2q81_A MIZ-1 protein; BTB/POZ 99.1 3.5E-11 1.2E-15 91.7 3.6 91 11-110 26-117 (119)
23 4eoz_A Speckle-type POZ protei 99.1 2.7E-11 9.4E-16 93.9 2.3 97 12-112 25-122 (145)
24 3ohu_A Transcription regulator 99.0 1.5E-11 5E-16 94.1 -0.5 89 13-107 33-123 (125)
25 3m5b_A Zinc finger and BTB dom 99.0 3E-10 1E-14 87.2 4.7 87 13-112 31-118 (119)
26 3i3n_A Kelch-like protein 11; 99.0 4.3E-10 1.5E-14 96.9 6.2 97 12-112 32-138 (279)
27 3hqi_A Speckle-type POZ protei 98.9 1.1E-09 3.7E-14 95.5 5.0 97 12-112 174-271 (312)
28 3fkc_A Transcriptional regulat 98.8 3.1E-09 1.1E-13 80.7 3.7 82 13-103 32-115 (116)
29 2ast_A S-phase kinase-associat 97.9 1.2E-05 4E-10 64.5 4.5 97 15-113 3-126 (159)
30 1fs1_B SKP1, cyclin A/CDK2-ass 97.0 0.00048 1.7E-08 54.1 3.7 92 15-113 4-121 (141)
31 2p1m_A SKP1-like protein 1A; F 96.9 0.00014 4.8E-09 58.4 0.0 94 12-113 3-125 (160)
32 4ajy_C Transcription elongatio 96.5 0.0021 7.3E-08 47.1 3.9 81 14-97 3-96 (97)
33 3v7d_A Suppressor of kinetocho 94.9 0.075 2.6E-06 42.8 7.2 100 12-112 6-132 (169)
34 1hv2_A Elongin C, ELC1; protei 92.6 0.28 9.6E-06 35.9 6.2 83 12-98 3-99 (99)
35 2fnj_C Transcription elongatio 91.0 0.27 9.3E-06 35.8 4.5 82 14-98 2-96 (96)
36 1vcb_B Protein (elongin C); tu 87.8 0.37 1.3E-05 36.2 3.2 90 8-98 12-112 (112)
37 2av4_A Thioredoxin-like protei 78.3 3.7 0.00013 32.9 5.5 75 122-206 23-108 (160)
38 2djk_A PDI, protein disulfide- 37.6 20 0.0007 26.1 2.7 67 127-205 12-92 (133)
39 3v4g_A Arginine repressor; vib 35.6 60 0.0021 26.3 5.3 19 174-192 111-129 (180)
40 1rki_A Hypothetical protein; s 34.0 16 0.00055 26.8 1.4 27 164-190 63-99 (102)
41 1a0r_P Phosducin, MEKA, PP33; 24.3 3E+02 0.01 22.6 8.7 77 121-208 113-200 (245)
No 1
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=100.00 E-value=6.1e-41 Score=283.47 Aligned_cols=172 Identities=25% Similarity=0.415 Sum_probs=134.4
Q ss_pred cCCCCCceEEEEECCeEEEeeHHhhcCC-CcchhhhhcCCCcc--ccCCCceEEEcCCCCchHHHhhchhcCceecCCCc
Q psy33 7 VSGNPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEI--LTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENP 83 (214)
Q Consensus 7 ~~~~~~~~V~LNVGG~~F~Ttr~TL~k~-~s~L~~mfs~~~~~--~~d~~g~~fIDRdp~~F~~ILnyLR~G~l~lp~~~ 83 (214)
-.+..+++|+|||||++|.|+++||+++ +|+|++||+++... ..|++|+|||||||.+|++||||||+|++++|++.
T Consensus 6 ~~g~~~~~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFIDRDP~~F~~ILnyLRtG~L~lP~~~ 85 (202)
T 3drx_A 6 RPGSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDL 85 (202)
T ss_dssp CSSCCCCEEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEECSCSTTHHHHHHHHHHSCCCCCTTS
T ss_pred CCCCCCCEEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEecCChHHHHHHHHHhcCCccCCCCCC
Confidence 3567889999999999999999999999 99999999876543 35688999999999999999999999999999998
Q ss_pred hhHHHHHHhhcccCchhHHHHHHHHHHHhhc--CCCCc-eeeeeccCHHHHH-HHHhc-CCCCEEEEEEEeeCCeeEeec
Q psy33 84 KDVAELLAEAKYYCITELTDLCEQTIKRKQR--ETEPI-CRVPLITSLKEEQ-LLLNA-TAKPVVKLLINRHNNKYSYTS 158 (214)
Q Consensus 84 ~e~~~Ll~EA~fy~L~~Lv~~c~~~L~~~~~--~~~p~-~~v~~i~~~~e~~-~~i~~-~~k~~~~~~~~~~~~~ysy~~ 158 (214)
+. ..|++||+||+|.+|+++|+++|++++. ++.|. +..||++|++|++ +|+++ ++.|.+++++|+| +.|+|++
T Consensus 86 ~~-~~l~eEA~FygL~~Lv~~l~~~i~ere~~~~~~~~k~v~~v~qc~~~el~~~~s~~~d~~~~~~~~~~~-~~~~~~~ 163 (202)
T 3drx_A 86 AE-EGVLEEAEFYNITSLIKLVKDKIRERDSKTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLVSIG-SSYNYGN 163 (202)
T ss_dssp CH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCCSCCCEEEEEEECSTHHHHHHHTCCTTCEEEEEEEC---------
T ss_pred CH-HHHHHHHHHCCcHHHHHHHHHHHHHHhcccccCCCcceeeeeeCCHHHHHHHHHhhccccChhheEecc-ccccCCC
Confidence 74 7899999999999999999999988775 34444 4459999999988 68866 8999999999998 9999999
Q ss_pred cChhHHhhhhcccceeeeeecceE
Q psy33 159 TSDDNLLKNIELFDKLALRFSGRL 182 (214)
Q Consensus 159 ~~~~~~l~n~e~fd~l~~~~~~~v 182 (214)
+++++||| .+.++|..+-+|..
T Consensus 164 ~~~~e~l~--~~~~~~~~~~~~~~ 185 (202)
T 3drx_A 164 EDQAEFLC--VVSKELHNTPYGTA 185 (202)
T ss_dssp ----CEEE--EEEECCC-------
T ss_pred cCcceEEE--EEeecccCCCCCcc
Confidence 99999999 77888876666654
No 2
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=99.97 E-value=2.5e-31 Score=203.67 Aligned_cols=102 Identities=33% Similarity=0.559 Sum_probs=91.5
Q ss_pred CCCCceEEEEECCeEEEeeHHhhcCC-CcchhhhhcCCCcc--ccCCCceEEEcCCCCchHHHhhchhcCceecCCCchh
Q psy33 9 GNPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEI--LTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKD 85 (214)
Q Consensus 9 ~~~~~~V~LNVGG~~F~Ttr~TL~k~-~s~L~~mfs~~~~~--~~d~~g~~fIDRdp~~F~~ILnyLR~G~l~lp~~~~e 85 (214)
|+.+++|+|||||++|.|+++||+++ +|+|++||+++... ..|++|+|||||||.+|++||||||+|++++|++.+
T Consensus 2 g~~~~~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~l~~p~~~~- 80 (107)
T 3drz_A 2 GSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLA- 80 (107)
T ss_dssp ---CCEEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSCCCCCTTSC-
T ss_pred CCCCCEEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEecCChHHHHHHHHHhCCCeeCCCCCCC-
Confidence 56789999999999999999999999 89999999887543 246789999999999999999999999999999876
Q ss_pred HHHHHHhhcccCchhHHHHHHHHHHH
Q psy33 86 VAELLAEAKYYCITELTDLCEQTIKR 111 (214)
Q Consensus 86 ~~~Ll~EA~fy~L~~Lv~~c~~~L~~ 111 (214)
...+++||+||+|++|+++|+++|++
T Consensus 81 ~~~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 81 EEGVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 48999999999999999999999976
No 3
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=99.95 E-value=5.6e-29 Score=193.59 Aligned_cols=102 Identities=24% Similarity=0.281 Sum_probs=88.7
Q ss_pred CCceEEEEECCeEEEeeHHhhcCC-CcchhhhhcCCCccccCCCceEEEcCCCCchHHHhhchhcCceecCCCchhHHHH
Q psy33 11 PCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAEL 89 (214)
Q Consensus 11 ~~~~V~LNVGG~~F~Ttr~TL~k~-~s~L~~mfs~~~~~~~d~~g~~fIDRdp~~F~~ILnyLR~G~l~lp~~~~e~~~L 89 (214)
.+++|+|||||++|.|+++||+++ +|+|++|+++.. ...+++|+|||||||.+|++||||||+|++++|++.+ ...+
T Consensus 3 ~~~~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~-~~~~~~g~~FiDRdp~~F~~ILnylR~G~l~~p~~~~-~~~~ 80 (115)
T 3kvt_A 3 AENRVIINVGGIRHETYKATLKKIPATRLSRLTEGML-NYDPVLNEYFFDRHPGVFAQIINYYRSGKLHYPTDVC-GPLF 80 (115)
T ss_dssp -CCEEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTST-TEETTTTEEEECSCTTTHHHHHHHHHHSCBCCCSSSC-HHHH
T ss_pred CCCEEEEEECCEEEEecHHHHhcCCCccHHHHhcCCC-CCCCCCCcEEEecChHHHHHHHHHhcCCCCCCCCccc-HHHH
Confidence 578999999999999999999999 999999998643 3346889999999999999999999999999999876 5899
Q ss_pred HHhhcccCchhH--HHHHHHHHHHhhc
Q psy33 90 LAEAKYYCITEL--TDLCEQTIKRKQR 114 (214)
Q Consensus 90 l~EA~fy~L~~L--v~~c~~~L~~~~~ 114 (214)
++||+||+|+++ ..+|...++++++
T Consensus 81 ~~Ea~fy~i~~~~l~~CC~~~~~~~~~ 107 (115)
T 3kvt_A 81 EEELEFWGLDSNQVEPCCWMTYTAHRD 107 (115)
T ss_dssp HHHHHHHTCCGGGBCGGGSHHHHSCC-
T ss_pred HHHHHHhCCChHHHHHHHHHHHHhccc
Confidence 999999999884 4568888776554
No 4
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=99.95 E-value=1.2e-28 Score=193.98 Aligned_cols=111 Identities=24% Similarity=0.313 Sum_probs=88.1
Q ss_pred CCcccccCCCCCceEEEEECCeEEEeeHHhhcCC-CcchhhhhcCCCccccCCCceEEEcCCCCchHHHhhchhcCceec
Q psy33 1 MSINFIVSGNPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSL 79 (214)
Q Consensus 1 ~~~~~~~~~~~~~~V~LNVGG~~F~Ttr~TL~k~-~s~L~~mfs~~~~~~~d~~g~~fIDRdp~~F~~ILnyLR~G~l~l 79 (214)
|+.-.......+++|+|||||++|+|+++||+++ +|+|++ +++.....|++|+|||||||.+|++||||||+|++++
T Consensus 1 ~~~p~~~~~~~~~~V~LNVGG~~F~t~~~TL~~~p~S~L~~--~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~G~l~~ 78 (124)
T 1s1g_A 1 MLAPADKNKRQDELIVLNVSGRRFQTWRTTLERYPDTLLGS--TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHY 78 (124)
T ss_dssp -----------CCEEEEEETTEEEEEEHHHHTTSTTSSTTS--SGGGGTBCSSSCSEEECSCHHHHHHHHHHHHHSCBCC
T ss_pred CCCCCCCCCCCCCEEEEEeCCEEEEEeHHHHhcCCCceecc--cCCcccccCCCCcEEEcCChHHHHHHHHHHhcCCCCC
Confidence 5555556677889999999999999999999999 999998 5554455678999999999999999999999999999
Q ss_pred CCCchhHHHHHHhhcccCchhH--HHHHHHHHHHhhc
Q psy33 80 PENPKDVAELLAEAKYYCITEL--TDLCEQTIKRKQR 114 (214)
Q Consensus 80 p~~~~e~~~Ll~EA~fy~L~~L--v~~c~~~L~~~~~ 114 (214)
|++.+ +..|++||+||+|.++ ..+|++.++++.+
T Consensus 79 p~~~~-~~~l~~Ea~fy~i~~l~l~~cC~~~~~~~~~ 114 (124)
T 1s1g_A 79 PRYEC-ISAYDDELAFYGILPEIIGDCCYEEYKDRKR 114 (124)
T ss_dssp CTTSC-HHHHHHHHHHTTCCGGGBCHHHHHHHHHHHH
T ss_pred CCCcC-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 99874 7999999999999997 4677777766543
No 5
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=99.94 E-value=2e-27 Score=180.63 Aligned_cols=88 Identities=26% Similarity=0.331 Sum_probs=78.9
Q ss_pred ceEEEEECCeEEEeeHHhhcCC-CcchhhhhcCCCccccCCCceEEEcCCCCchHHHhhchhc-CceecCCCchhHHHHH
Q psy33 13 QYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRD-GQVSLPENPKDVAELL 90 (214)
Q Consensus 13 ~~V~LNVGG~~F~Ttr~TL~k~-~s~L~~mfs~~~~~~~d~~g~~fIDRdp~~F~~ILnyLR~-G~l~lp~~~~e~~~Ll 90 (214)
++|+|||||++|+|+++||+++ +|+|++|++.. ....+++|+|||||||.+|++||||||+ |++++|++.+ +..++
T Consensus 1 ~~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~~eyFiDRdp~~F~~ILnflR~~G~l~~p~~~~-~~~~~ 78 (100)
T 1t1d_A 1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRN-RYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPVNVP-LDVFS 78 (100)
T ss_dssp CEEEEEETTEEEEEEHHHHHTSTTSTTTCHHHHG-GGEETTTTEEEECSCSTTHHHHHHHHHTTSCCCCCTTSC-HHHHH
T ss_pred CEEEEEECCEEEEeeHHHHhcCCCccccchhccc-cccCCCceeEEEcCChHHHHHHHHHHhcCCcccCCCCCC-HHHHH
Confidence 4799999999999999999999 99999998742 2334578999999999999999999999 9999999875 79999
Q ss_pred HhhcccCchhHH
Q psy33 91 AEAKYYCITELT 102 (214)
Q Consensus 91 ~EA~fy~L~~Lv 102 (214)
+||+||+|.+++
T Consensus 79 ~Ea~fy~i~~~~ 90 (100)
T 1t1d_A 79 EEIKFYELGENA 90 (100)
T ss_dssp HHHHHTTCCHHH
T ss_pred HHHHHcCCCHHH
Confidence 999999999865
No 6
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=99.94 E-value=1.4e-27 Score=182.75 Aligned_cols=97 Identities=26% Similarity=0.356 Sum_probs=84.2
Q ss_pred eEEEEECCeEEEeeHHhhcCC-CcchhhhhcCCCccccCCCceEEEcCCCCchHHHhhchhcCceecCCCchhHHHHHHh
Q psy33 14 YVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAE 92 (214)
Q Consensus 14 ~V~LNVGG~~F~Ttr~TL~k~-~s~L~~mfs~~~~~~~d~~g~~fIDRdp~~F~~ILnyLR~G~l~lp~~~~e~~~Ll~E 92 (214)
.|+|||||++|+|+++||+++ +|+|+++ ++.....|++|+|||||||.+|++||||||+|++++|++.+ +..|++|
T Consensus 1 ~V~LNVGG~~f~t~~~TL~~~p~s~L~~~--~~~~~~~~~~~~~FiDRdp~~F~~ILnflR~g~l~~p~~~~-~~~l~~E 77 (105)
T 1nn7_A 1 LIVLNVSGTRFQTWQDTLERYPDTLLGSS--ERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKLHYPRHEC-ISAYDEE 77 (105)
T ss_dssp CEEEEETTEEEEECHHHHHTSCSSSTTSG--GGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSCBCCCTTSC-HHHHHHH
T ss_pred CEEEEECCEEEEEeHHHHhcCCCcccccc--CCcccccCCCCcEEEeCCcHHHHHHHHHHhcCCCCCCCCcC-HHHHHHH
Confidence 489999999999999999999 9999983 44444456889999999999999999999999999999875 7999999
Q ss_pred hcccCchhH--HHHHHHHHHHhh
Q psy33 93 AKYYCITEL--TDLCEQTIKRKQ 113 (214)
Q Consensus 93 A~fy~L~~L--v~~c~~~L~~~~ 113 (214)
|+||+|.++ ..+|.+..++++
T Consensus 78 a~fy~i~~l~~~~cc~~~~~~~~ 100 (105)
T 1nn7_A 78 LAFFGLIPEIIGDCCYEEYKDRR 100 (105)
T ss_dssp HHHHTCCSCCBCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHH
Confidence 999999996 457777776543
No 7
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=99.94 E-value=1.4e-27 Score=191.66 Aligned_cols=104 Identities=25% Similarity=0.357 Sum_probs=90.2
Q ss_pred CCCCCceEEEEECCeEEEeeHHhhcCC-CcchhhhhcCCCccccCCCceEEEcCCCCchHHHhhchhcCceecCCCchhH
Q psy33 8 SGNPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDV 86 (214)
Q Consensus 8 ~~~~~~~V~LNVGG~~F~Ttr~TL~k~-~s~L~~mfs~~~~~~~d~~g~~fIDRdp~~F~~ILnyLR~G~l~lp~~~~e~ 86 (214)
....+++|+|||||++|+|+++||+++ +|+|++ +++.....|++|+|||||||.+|++||||||+|++++|++.+ +
T Consensus 30 ~~~~~~~V~LNVGG~~F~T~~~TL~~~P~S~L~~--~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~G~l~~p~~~~-~ 106 (140)
T 2nz0_B 30 NKRQDELIVLNVSGRRFQTWRTTLERYPDTLLGS--TEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYEC-I 106 (140)
T ss_dssp CTTCCCEEEEEETTEEEEEEHHHHHTCTTSTTTS--GGGGGSEETTTTEEEECSCHHHHHHHHHHHHHSSBCCCTTSC-H
T ss_pred cCCCCCEEEEEECCEEEEeeHHHHhcCCCeeecc--cCCcccccCCCCeEEEeCCcHHHHHHHHHHhcCCcCCCCCcC-H
Confidence 345689999999999999999999999 999998 455445567899999999999999999999999999999875 7
Q ss_pred HHHHHhhcccCchhH--HHHHHHHHHHhhc
Q psy33 87 AELLAEAKYYCITEL--TDLCEQTIKRKQR 114 (214)
Q Consensus 87 ~~Ll~EA~fy~L~~L--v~~c~~~L~~~~~ 114 (214)
..|++||+||+|.++ ..+|.+.++++++
T Consensus 107 ~~l~eEa~fy~i~~l~l~~CC~~~~~~~~~ 136 (140)
T 2nz0_B 107 SAYDDELAFYGILPEIIGDCCYEEYKDRKR 136 (140)
T ss_dssp HHHHHHHHHHTCCGGGBCTTTHHHHHHHTC
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 999999999999997 4567777766543
No 8
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.82 E-value=7e-21 Score=179.73 Aligned_cols=91 Identities=21% Similarity=0.304 Sum_probs=80.0
Q ss_pred CCCceEEEEECCeEEEeeHHhhcCC-CcchhhhhcCCCccccCCCceEEEcCCCCchHHHhhchhc-CceecCCCchhHH
Q psy33 10 NPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRD-GQVSLPENPKDVA 87 (214)
Q Consensus 10 ~~~~~V~LNVGG~~F~Ttr~TL~k~-~s~L~~mfs~~~~~~~d~~g~~fIDRdp~~F~~ILnyLR~-G~l~lp~~~~e~~ 87 (214)
..+++|+|||||++|+|+++||+++ +|+|++|++.. ....+++|+|||||||.+|++||||||+ |++.+|++.+ ..
T Consensus 49 ~~~~~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~-~~~~~~~~~~f~DR~~~~F~~IL~~~r~~g~l~~p~~~~-~~ 126 (514)
T 2r9r_B 49 ESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRM-RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVP-LD 126 (514)
T ss_dssp --CCEEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHG-GGEETTTTEEEECSCHHHHHHHHHHHHHTSCCCCCTTSC-HH
T ss_pred CCCCEEEEEeCCEEEEecHHHHhcCCCCcccccccCC-cccCCCCCCEEEcCChHHHHHHHHHHhcCCccccCCccc-HH
Confidence 3478999999999999999999999 99999988632 2334578999999999999999999999 9999999976 58
Q ss_pred HHHHhhcccCchhHH
Q psy33 88 ELLAEAKYYCITELT 102 (214)
Q Consensus 88 ~Ll~EA~fy~L~~Lv 102 (214)
.+++||+||+|+++.
T Consensus 127 ~~~~E~~f~~i~~~~ 141 (514)
T 2r9r_B 127 IFSEEIRFYELGEEA 141 (514)
T ss_dssp HHHHHHHHTTCCHHH
T ss_pred HHHHHHHhcCCCHHH
Confidence 999999999998854
No 9
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.35 E-value=1.1e-12 Score=100.62 Aligned_cols=98 Identities=17% Similarity=0.318 Sum_probs=85.7
Q ss_pred CCCceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEE--cCCCCchHHHhhchhcCceecCCCchhHH
Q psy33 10 NPCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLI--DRCGKHFGIILNFLRDGQVSLPENPKDVA 87 (214)
Q Consensus 10 ~~~~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fI--DRdp~~F~~ILnyLR~G~l~lp~~~~e~~ 87 (214)
..-.-|+|.|||+.|.++|..|+..+++|++||.+.+.. ....+-+ |-+|..|+.+|+|+++|.+.++.+ ++.
T Consensus 27 ~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e---~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~~--~~~ 101 (127)
T 1r29_A 27 DILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR---NLSVINLDPEINPEGFNILLDFMYTSRLNLREG--NIM 101 (127)
T ss_dssp TCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT---TCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTT--THH
T ss_pred CCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC---CCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCHH--HHH
Confidence 344578999999999999999999999999999987653 3566766 789999999999999999988764 589
Q ss_pred HHHHhhcccCchhHHHHHHHHHHHh
Q psy33 88 ELLAEAKYYCITELTDLCEQTIKRK 112 (214)
Q Consensus 88 ~Ll~EA~fy~L~~Lv~~c~~~L~~~ 112 (214)
+++..|.+|+++.|.+.|++.|.++
T Consensus 102 ~ll~~A~~~~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 102 AVMATAMYLQMEHVVDTCRKFIKAS 126 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999998754
No 10
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.28 E-value=3.8e-12 Score=96.22 Aligned_cols=92 Identities=18% Similarity=0.292 Sum_probs=80.0
Q ss_pred CCceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEE---cCCCCchHHHhhchhcCceecCCCchhHH
Q psy33 11 PCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLI---DRCGKHFGIILNFLRDGQVSLPENPKDVA 87 (214)
Q Consensus 11 ~~~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fI---DRdp~~F~~ILnyLR~G~l~lp~~~~e~~ 87 (214)
.-.-|+|.|||+.|.++|..|+..+++|++||.+. ....+-| |-+|..|+.+|+|+++|++.++.+ ++.
T Consensus 21 ~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~------~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~~--~v~ 92 (116)
T 2vpk_A 21 FLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST------SENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSW--NVK 92 (116)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC------CCSCEECCTTTCCHHHHHHHHHHHHHSCCCCCTT--THH
T ss_pred CCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC------CCCeEEeecCCCCHHHHHHHHHHHcCCCcccCHH--HHH
Confidence 34568899999999999999999999999999875 2344544 579999999999999999988765 589
Q ss_pred HHHHhhcccCchhHHHHHHHHHH
Q psy33 88 ELLAEAKYYCITELTDLCEQTIK 110 (214)
Q Consensus 88 ~Ll~EA~fy~L~~Lv~~c~~~L~ 110 (214)
+++..|++|++++|.+.|++.|.
T Consensus 93 ~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 93 EIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHh
Confidence 99999999999999999999875
No 11
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.27 E-value=8.8e-12 Score=92.77 Aligned_cols=97 Identities=22% Similarity=0.283 Sum_probs=80.5
Q ss_pred CCCceEEEEECC----eEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEE-cCCCCchHHHhhchhcCceecCCCch
Q psy33 10 NPCQYVKLNVGG----SLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLI-DRCGKHFGIILNFLRDGQVSLPENPK 84 (214)
Q Consensus 10 ~~~~~V~LNVGG----~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fI-DRdp~~F~~ILnyLR~G~l~lp~~~~ 84 (214)
+.-.-|+|.||| +.|.++|..|+..+++|++||++.+.... ..+-+ |-+|..|+.+|+|+++|+++++.+
T Consensus 6 ~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~---~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~-- 80 (109)
T 2vkp_A 6 ELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK---SEIHIPDVEPAAFLILLKYMYSDEIDLEAD-- 80 (109)
T ss_dssp CTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C---CEEEETTSCHHHHHHHHHHHHHCCCCCCTT--
T ss_pred CCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC---CeEEeCCCCHHHHHHHHHHHcCCCccCCHH--
Confidence 344568899998 99999999999999999999998764322 55555 689999999999999999988874
Q ss_pred hHHHHHHhhcccCchhHHHHHHHHHHH
Q psy33 85 DVAELLAEAKYYCITELTDLCEQTIKR 111 (214)
Q Consensus 85 e~~~Ll~EA~fy~L~~Lv~~c~~~L~~ 111 (214)
++..++..|++|+++.|.+.|.+.|.+
T Consensus 81 ~~~~ll~~A~~~~~~~L~~~c~~~l~~ 107 (109)
T 2vkp_A 81 TVLATLYAAKKYIVPALAKACVNFLET 107 (109)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 579999999999999999999999875
No 12
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.25 E-value=4.3e-12 Score=96.75 Aligned_cols=95 Identities=19% Similarity=0.366 Sum_probs=79.5
Q ss_pred CCceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEEcCCCCchHHHhhchhcCceecCCCchhHHHHH
Q psy33 11 PCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELL 90 (214)
Q Consensus 11 ~~~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fIDRdp~~F~~ILnyLR~G~l~lp~~~~e~~~Ll 90 (214)
.-.-|+|.|||+.|..+|..|+..+++|++||.+++ .....+-|-+|..|+.+|+|+++|++.++.+ ++.+++
T Consensus 23 ~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~-----~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~~--~v~~ll 95 (119)
T 3b84_A 23 QYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS-----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSG--NRDQVL 95 (119)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT-----CCCEEECGGGHHHHHHHHHHHHHSCCCCCTT--THHHHH
T ss_pred CCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC-----CCeEEeCCCCHHHHHHHHHHHcCCCCccCHH--HHHHHH
Confidence 345688999999999999999999999999998764 2223344688999999999999999988765 479999
Q ss_pred HhhcccCchhHHHHHHHHHHHh
Q psy33 91 AEAKYYCITELTDLCEQTIKRK 112 (214)
Q Consensus 91 ~EA~fy~L~~Lv~~c~~~L~~~ 112 (214)
..|++|++++|.+.|++.|.+.
T Consensus 96 ~~A~~~~i~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 96 LAARELRVPEAVELCQSFKPKT 117 (119)
T ss_dssp HHHHHTTCHHHHHHHHHCC---
T ss_pred HHHHHhCcHHHHHHHHHHHHHc
Confidence 9999999999999999988653
No 13
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.24 E-value=5.1e-12 Score=95.90 Aligned_cols=96 Identities=14% Similarity=0.227 Sum_probs=79.4
Q ss_pred CCCceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEE-cCCCCchHHHhhchhcCceecCCCchhHHH
Q psy33 10 NPCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLI-DRCGKHFGIILNFLRDGQVSLPENPKDVAE 88 (214)
Q Consensus 10 ~~~~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fI-DRdp~~F~~ILnyLR~G~l~lp~~~~e~~~ 88 (214)
+.-.-|+|.|||+.|..+|..|+..+++|++||++++... ....+-+ |-+|..|+.+|+|+++|++.++.+ ++..
T Consensus 23 ~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~--~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~~--~~~~ 98 (120)
T 2if5_A 23 GLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVD--QQNVYEIDFVSAEALTALMDFAYTATLTVSTA--NVGD 98 (120)
T ss_dssp TCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-------CCSEEECCSSCHHHHHHHHHHHHHSCCCCCGG--GHHH
T ss_pred CCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCcccc--CCceEEeCCCCHHHHHHHHHHHcCCCCccCHH--HHHH
Confidence 3456788999999999999999999999999999876432 2344444 579999999999999999988754 5899
Q ss_pred HHHhhcccCchhHHHHHHHHH
Q psy33 89 LLAEAKYYCITELTDLCEQTI 109 (214)
Q Consensus 89 Ll~EA~fy~L~~Lv~~c~~~L 109 (214)
++..|.+|++++|.+.|++.|
T Consensus 99 ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 99 ILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHh
Confidence 999999999999999999887
No 14
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.23 E-value=5.6e-12 Score=99.66 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=80.5
Q ss_pred CCceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEE-cCCCCchHHHhhchhcCceecCCCchhHHHH
Q psy33 11 PCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLI-DRCGKHFGIILNFLRDGQVSLPENPKDVAEL 89 (214)
Q Consensus 11 ~~~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fI-DRdp~~F~~ILnyLR~G~l~lp~~~~e~~~L 89 (214)
.-.-|+|.|||+.|.++|..|+..+++|++||.+.+.........+-+ |-+|..|+.+|+|+++|++.++.+ ++.++
T Consensus 46 ~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~~--~v~~l 123 (144)
T 2ppi_A 46 RFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNED--TIQDV 123 (144)
T ss_dssp CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCCCTT--THHHH
T ss_pred CCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCHH--HHHHH
Confidence 345688999999999999999999999999998876432223445555 679999999999999999988764 57999
Q ss_pred HHhhcccCchhHHHHHHHHH
Q psy33 90 LAEAKYYCITELTDLCEQTI 109 (214)
Q Consensus 90 l~EA~fy~L~~Lv~~c~~~L 109 (214)
+..|.+|++++|.+.|++.|
T Consensus 124 l~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 124 VQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp HHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHhCcHHHHHHHHHHh
Confidence 99999999999999998765
No 15
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.20 E-value=6.3e-12 Score=98.09 Aligned_cols=96 Identities=20% Similarity=0.357 Sum_probs=78.3
Q ss_pred CCceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEEcCCCCchHHHhhchhcCceecCCCchhHHHHH
Q psy33 11 PCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELL 90 (214)
Q Consensus 11 ~~~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fIDRdp~~F~~ILnyLR~G~l~lp~~~~e~~~Ll 90 (214)
.-.-|+|.|||+.|.++|..|+...++|++||.+.+ .....+-|-+++.|+.+|+|+++|++.++.+ ++.+++
T Consensus 24 ~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~-----~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~~--~v~~ll 96 (135)
T 2yy9_A 24 QYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT-----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSG--NRDQVL 96 (135)
T ss_dssp TTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC---------CCEEECGGGHHHHHHHHHHHHHSCCCCCTT--THHHHH
T ss_pred CCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC-----CCeEEeCCCCHHHHHHHHHHHhCCCCCCCHH--HHHHHH
Confidence 334688999999999999999999999999998764 1223344688999999999999999988764 589999
Q ss_pred HhhcccCchhHHHHHHHHHHHhh
Q psy33 91 AEAKYYCITELTDLCEQTIKRKQ 113 (214)
Q Consensus 91 ~EA~fy~L~~Lv~~c~~~L~~~~ 113 (214)
..|++|+++.|++.|++.|.+.-
T Consensus 97 ~~A~~l~i~~L~~~C~~~l~~~l 119 (135)
T 2yy9_A 97 LAAKELRVPEAVELCQSFQPQTS 119 (135)
T ss_dssp HHHHHTTCHHHHHHHHHCCC---
T ss_pred HHHHHhCcHHHHHHHHHHHHHhc
Confidence 99999999999999999886543
No 16
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.19 E-value=2.1e-11 Score=93.09 Aligned_cols=93 Identities=18% Similarity=0.207 Sum_probs=79.8
Q ss_pred CCceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEEcCCCCchHHHhhchhcCceecCCCchhHHHHH
Q psy33 11 PCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELL 90 (214)
Q Consensus 11 ~~~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fIDRdp~~F~~ILnyLR~G~l~lp~~~~e~~~Ll 90 (214)
.-.-|+|.|||+.|.++|..|+..+++|++||++.. ....+-|-+|+.|+.+|+|+++|+++++.+ ++.+++
T Consensus 27 ~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~------~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~~--~~~~ll 98 (121)
T 1buo_A 27 TLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNS------QHYTLDFLSPKTFQQILEYAYTATLQAKAE--DLDDLL 98 (121)
T ss_dssp TTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSCC------SEEEECSSCHHHHHHHHHHHHHSCCCCCGG--GHHHHH
T ss_pred CCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCCC------cEEEeCCCCHHHHHHHHHhhcCCCcCCCHH--HHHHHH
Confidence 345688999999999999999999999999998631 222344679999999999999999988764 589999
Q ss_pred HhhcccCchhHHHHHHHHHHH
Q psy33 91 AEAKYYCITELTDLCEQTIKR 111 (214)
Q Consensus 91 ~EA~fy~L~~Lv~~c~~~L~~ 111 (214)
..|++|++++|.+.|++.|.+
T Consensus 99 ~~A~~~~i~~L~~~c~~~l~~ 119 (121)
T 1buo_A 99 YAAEILEIEYLEEQCLKMLET 119 (121)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHH
Confidence 999999999999999999875
No 17
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.16 E-value=2e-11 Score=95.30 Aligned_cols=94 Identities=17% Similarity=0.251 Sum_probs=81.8
Q ss_pred CceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEE--cCCCCchHHHhhchhcCceecCCCchhHHHH
Q psy33 12 CQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLI--DRCGKHFGIILNFLRDGQVSLPENPKDVAEL 89 (214)
Q Consensus 12 ~~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fI--DRdp~~F~~ILnyLR~G~l~lp~~~~e~~~L 89 (214)
-.-|+|.|||+.|..+|..|+..+++|++||.+.+. +...+-+ +-++..|+.+|+|+++|++.++.+ ++.++
T Consensus 36 ~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~----e~~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~~--~v~~l 109 (138)
T 2z8h_A 36 LCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTD----AELTVTLPEEVTVKGFEPLIQFAYTAKLILSKD--NVDEV 109 (138)
T ss_dssp SCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCC----TTEEEECCTTSCHHHHHHHHHHHHHSCCCCCTT--THHHH
T ss_pred CcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCC----CCceEEeCCCCCHHHHHHHHHHhcCCCcccCHH--HHHHH
Confidence 346889999999999999999999999999987653 2344555 578999999999999999988865 58999
Q ss_pred HHhhcccCchhHHHHHHHHHHH
Q psy33 90 LAEAKYYCITELTDLCEQTIKR 111 (214)
Q Consensus 90 l~EA~fy~L~~Lv~~c~~~L~~ 111 (214)
+..|++|+++.|.+.|.+.|.+
T Consensus 110 l~~A~~~~i~~L~~~C~~~l~~ 131 (138)
T 2z8h_A 110 CRCVEFLSVHNIEESCFQFLKF 131 (138)
T ss_dssp HHHHHHHTCGGGHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999864
No 18
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.15 E-value=8.5e-12 Score=96.23 Aligned_cols=92 Identities=20% Similarity=0.247 Sum_probs=75.8
Q ss_pred CceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEE--cCCCCchHHHhhchhcCceecCCCchhHHHH
Q psy33 12 CQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLI--DRCGKHFGIILNFLRDGQVSLPENPKDVAEL 89 (214)
Q Consensus 12 ~~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fI--DRdp~~F~~ILnyLR~G~l~lp~~~~e~~~L 89 (214)
-.-|+|.|||+.|..+|..|+..+++|++||.+. ....+.+ |-+|..|+.+|+|+++|++.++.+ ++..+
T Consensus 33 ~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~------~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~--~~~~l 104 (129)
T 3ga1_A 33 YCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS------RSAVVELPAAVQPQSFQQILSFCYTGRLSMNVG--DQDLL 104 (129)
T ss_dssp SCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC------CCSEEECCTTCCHHHHHHHHHHHHHSEEECCTT--THHHH
T ss_pred CcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC------CCCEEEECCCCCHHHHHHHHHHHhCCccccCHH--HHHHH
Confidence 3458899999999999999999999999999864 3456666 689999999999999999998775 47999
Q ss_pred HHhhcccCchhHHHHHHHHHHH
Q psy33 90 LAEAKYYCITELTDLCEQTIKR 111 (214)
Q Consensus 90 l~EA~fy~L~~Lv~~c~~~L~~ 111 (214)
+..|.+|++++|.+.|.+.|.+
T Consensus 105 l~~A~~~~i~~l~~~C~~~L~~ 126 (129)
T 3ga1_A 105 MYTAGFLQIQEIMEKGTEFFLK 126 (129)
T ss_dssp HHHHHHTTBTTSSCC-------
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999998875
No 19
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.13 E-value=5.2e-11 Score=94.83 Aligned_cols=96 Identities=23% Similarity=0.318 Sum_probs=82.7
Q ss_pred ceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceE-EEcCCCCchHHHhhchhcCceecCCCchhHHHHHH
Q psy33 13 QYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWV-LIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLA 91 (214)
Q Consensus 13 ~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~-fIDRdp~~F~~ILnyLR~G~l~lp~~~~e~~~Ll~ 91 (214)
.-|+|.|||+.|.++|..|+..+++|++||++.+.... ...+ +-|-+|..|+.+|+|+++|+++++.+ .+..++.
T Consensus 35 ~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~--~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~~--~~~~ll~ 110 (172)
T 3htm_A 35 TDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESK--KNRVEINDVEPEVFKEMMCFIYTGKAPNLDK--MADDLLA 110 (172)
T ss_dssp CCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGG--TTEEEECSSCHHHHHHHHHHHHHSCCTTGGG--THHHHHH
T ss_pred cceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccC--CCeEEecCCCHHHHHHHHHHHhCCCCCCcHH--HHHHHHH
Confidence 46899999999999999999999999999998765322 3344 44789999999999999999987654 5799999
Q ss_pred hhcccCchhHHHHHHHHHHHh
Q psy33 92 EAKYYCITELTDLCEQTIKRK 112 (214)
Q Consensus 92 EA~fy~L~~Lv~~c~~~L~~~ 112 (214)
.|.+|++++|.+.|++.|.+.
T Consensus 111 ~A~~~~~~~l~~~c~~~l~~~ 131 (172)
T 3htm_A 111 AADKYALERLKVMCEDALCSN 131 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhCcHHHHHHHHHHHHHh
Confidence 999999999999999999864
No 20
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.11 E-value=8.2e-12 Score=95.84 Aligned_cols=93 Identities=16% Similarity=0.260 Sum_probs=78.4
Q ss_pred CceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEE--cCCCCchHHHhhchhcCceecCCCchhHHHH
Q psy33 12 CQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLI--DRCGKHFGIILNFLRDGQVSLPENPKDVAEL 89 (214)
Q Consensus 12 ~~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fI--DRdp~~F~~ILnyLR~G~l~lp~~~~e~~~L 89 (214)
-.-|+|.|||+.|..+|..|+..+++|++||.+.+. +...+-+ |-+++.|+.+|+|+++|++.++.+ ++.++
T Consensus 29 ~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~----e~~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~~--~v~~l 102 (124)
T 2ihc_A 29 LCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQAD----GELNITLPEEVTVKGFEPLIQFAYTAKLILSKE--NVDEV 102 (124)
T ss_dssp SCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC-------CEEEECCTTSCHHHHHHHHHHHHHSEEEEETT--THHHH
T ss_pred CcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCC----CCceEeecCCcCHHHHHHHHHHhcCCCcccCHH--HHHHH
Confidence 456889999999999999999999999999998653 2344555 678999999999999999988764 47999
Q ss_pred HHhhcccCchhHHHHHHHHHH
Q psy33 90 LAEAKYYCITELTDLCEQTIK 110 (214)
Q Consensus 90 l~EA~fy~L~~Lv~~c~~~L~ 110 (214)
+..|.+|+++.|.+.|++.|+
T Consensus 103 l~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 103 CKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp HHHHHHHTBSSCCGGGGGTC-
T ss_pred HHHHHHHCCHHHHHHHHHHHh
Confidence 999999999999999987653
No 21
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.10 E-value=1.2e-10 Score=99.14 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=79.2
Q ss_pred CCCCceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEE-cCCCCchHHHhhchhcCceecCCCchhHH
Q psy33 9 GNPCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLI-DRCGKHFGIILNFLRDGQVSLPENPKDVA 87 (214)
Q Consensus 9 ~~~~~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fI-DRdp~~F~~ILnyLR~G~l~lp~~~~e~~ 87 (214)
.+.-.-|+|.|||+.|..+|..|+..+++|++||++.+.........+-+ |-+|..|+.+|+|+++|++.++.+ ++.
T Consensus 28 ~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~~~--~v~ 105 (256)
T 3hve_A 28 ESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNED--TIQ 105 (256)
T ss_dssp --CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCCC-C--CHH
T ss_pred cCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCcccHh--HHH
Confidence 33445789999999999999999999999999999876422223345544 689999999999999999988775 479
Q ss_pred HHHHhhcccCchhHHHHHHHHHHHh
Q psy33 88 ELLAEAKYYCITELTDLCEQTIKRK 112 (214)
Q Consensus 88 ~Ll~EA~fy~L~~Lv~~c~~~L~~~ 112 (214)
.++..|.+|++++|.+.|.+.|.+.
T Consensus 106 ~ll~~A~~l~i~~l~~~c~~~L~~~ 130 (256)
T 3hve_A 106 DVVQAADLLLLTDLKTLCCEFLEGC 130 (256)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHChHHHHHHHHHHHHhh
Confidence 9999999999999999999999864
No 22
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.10 E-value=3.5e-11 Score=91.67 Aligned_cols=91 Identities=16% Similarity=0.278 Sum_probs=77.4
Q ss_pred CCceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEE-cCCCCchHHHhhchhcCceecCCCchhHHHH
Q psy33 11 PCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLI-DRCGKHFGIILNFLRDGQVSLPENPKDVAEL 89 (214)
Q Consensus 11 ~~~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fI-DRdp~~F~~ILnyLR~G~l~lp~~~~e~~~L 89 (214)
.-.-|+|.|||+.|..+|..|+..+++|++||++..+ .+-+ |-+|..|+.+|+|+++|++.++.+ ++.++
T Consensus 26 ~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~~~-------~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~--~~~~l 96 (119)
T 2q81_A 26 LLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKD-------VVHLDISNAAGLGQVLEFMYTAKLSLSPE--NVDDV 96 (119)
T ss_dssp CSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCCS-------GGGGGGCCHHHHHHHHHHHHHSCCCCCTT--THHHH
T ss_pred CCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCCCC-------EEEeCCCCHHHHHHHHHHHcCCCCccCHH--HHHHH
Confidence 3456889999999999999999999999999986422 1222 347899999999999999998875 57999
Q ss_pred HHhhcccCchhHHHHHHHHHH
Q psy33 90 LAEAKYYCITELTDLCEQTIK 110 (214)
Q Consensus 90 l~EA~fy~L~~Lv~~c~~~L~ 110 (214)
+..|.+|++++|.+.|++.|.
T Consensus 97 l~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 97 LAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHh
Confidence 999999999999999998874
No 23
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.08 E-value=2.7e-11 Score=93.93 Aligned_cols=97 Identities=23% Similarity=0.312 Sum_probs=79.5
Q ss_pred CceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceE-EEcCCCCchHHHhhchhcCceecCCCchhHHHHH
Q psy33 12 CQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWV-LIDRCGKHFGIILNFLRDGQVSLPENPKDVAELL 90 (214)
Q Consensus 12 ~~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~-fIDRdp~~F~~ILnyLR~G~l~lp~~~~e~~~Ll 90 (214)
-.-|+|.|||+.|.++|..|+..+++|++||++.+.... ...+ +-|-+|..|+.+|+|+++|+++++.+ .+..++
T Consensus 25 ~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~--~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~--~~~~ll 100 (145)
T 4eoz_A 25 FTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESK--KNRVEINDVEPEVFKEMMCFIYTGKAPNLDK--MADDLL 100 (145)
T ss_dssp SCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHH--HTEEEECSSCHHHHHHHHHHHHHSCCTTGGG--THHHHH
T ss_pred CcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCC--CceEEecCCCHHHHHHHHHhhccCccCCcHH--HHHHHH
Confidence 356889999999999999999999999999998764321 2344 44789999999999999999987654 579999
Q ss_pred HhhcccCchhHHHHHHHHHHHh
Q psy33 91 AEAKYYCITELTDLCEQTIKRK 112 (214)
Q Consensus 91 ~EA~fy~L~~Lv~~c~~~L~~~ 112 (214)
..|.+|++++|.+.|++.|.+.
T Consensus 101 ~~A~~~~~~~l~~~c~~~l~~~ 122 (145)
T 4eoz_A 101 AAADKYALERLKVMCEDALCSN 122 (145)
T ss_dssp HHHHHTTCHHHHHHHHCC----
T ss_pred HHHHHhCHHHHHHHHHHHHHHh
Confidence 9999999999999999988753
No 24
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.05 E-value=1.5e-11 Score=94.14 Aligned_cols=89 Identities=18% Similarity=0.275 Sum_probs=77.0
Q ss_pred ceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEE-c-CCCCchHHHhhchhcCceecCCCchhHHHHH
Q psy33 13 QYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLI-D-RCGKHFGIILNFLRDGQVSLPENPKDVAELL 90 (214)
Q Consensus 13 ~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fI-D-Rdp~~F~~ILnyLR~G~l~lp~~~~e~~~Ll 90 (214)
.-|+|.|||+.|..+|..|+..+++|++||.+.+. +...+-+ | -++..|+.+|+|+++|++.++.+ ++..++
T Consensus 33 ~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~----e~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~~--~v~~ll 106 (125)
T 3ohu_A 33 CDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTK----NDLVVSLPEEVTARGFGPLLQFAYTAKLLLSRE--NIREVI 106 (125)
T ss_dssp CCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCC----SSCEEECCTTCCHHHHHHHHHHHTTSEEEECTT--THHHHH
T ss_pred cceEEEECCEEEechHHHHHHcCHHHHHHhcCCCC----CCcEEEeCCCCCHHHHHHHHHhHcCCceEECHH--HHHHHH
Confidence 45889999999999999999999999999987653 2445555 4 79999999999999999998775 579999
Q ss_pred HhhcccCchhHHHHHHH
Q psy33 91 AEAKYYCITELTDLCEQ 107 (214)
Q Consensus 91 ~EA~fy~L~~Lv~~c~~ 107 (214)
..|.+|+++.|.+.|++
T Consensus 107 ~~A~~l~i~~L~~~C~~ 123 (125)
T 3ohu_A 107 RCAEFLRMHNLEDSCFS 123 (125)
T ss_dssp HHHHHHTBSSCTTSSCC
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 99999999999988764
No 25
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=98.99 E-value=3e-10 Score=87.21 Aligned_cols=87 Identities=17% Similarity=0.199 Sum_probs=72.2
Q ss_pred ceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceE-EEcCCCCchHHHhhchhcCceecCCCchhHHHHHH
Q psy33 13 QYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWV-LIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLA 91 (214)
Q Consensus 13 ~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~-fIDRdp~~F~~ILnyLR~G~l~lp~~~~e~~~Ll~ 91 (214)
.-|+|.|||+.|..+|..|+..+.+|.+. ...+ +-|-+|..|+.+|+|+++|++.++.+ ++..++.
T Consensus 31 ~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~-----------~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~--~v~~ll~ 97 (119)
T 3m5b_A 31 CDTLITVGSQEFPAHSLVLAGVSQQLGRR-----------GQWALGEGISPSTFAQLLNFVYGESVELQPG--ELRPLQE 97 (119)
T ss_dssp CCEEEEETTEEEEECHHHHHTTCGGGCCC-----------EEEECCSSCCHHHHHHHHHHHTTCCEEECGG--GHHHHHH
T ss_pred cceEEEECCEEEeeEHHHHHHcCHHHhcC-----------CCEEEeCCCCHHHHHHHHHHHcCCCcCcCHH--HHHHHHH
Confidence 45889999999999999999998898751 1222 23578999999999999999998764 5899999
Q ss_pred hhcccCchhHHHHHHHHHHHh
Q psy33 92 EAKYYCITELTDLCEQTIKRK 112 (214)
Q Consensus 92 EA~fy~L~~Lv~~c~~~L~~~ 112 (214)
.|.+|+++.|.+.|++.++++
T Consensus 98 aA~~l~i~~l~~~C~~~~~~~ 118 (119)
T 3m5b_A 98 AARALGVQSLEEACWRARGDR 118 (119)
T ss_dssp HHHHTTCHHHHHHHHHHC---
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 999999999999999988754
No 26
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=98.99 E-value=4.3e-10 Score=96.90 Aligned_cols=97 Identities=18% Similarity=0.342 Sum_probs=79.6
Q ss_pred CceEEEEEC---CeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEE-------cCCCCchHHHhhchhcCceecCC
Q psy33 12 CQYVKLNVG---GSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLI-------DRCGKHFGIILNFLRDGQVSLPE 81 (214)
Q Consensus 12 ~~~V~LNVG---G~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fI-------DRdp~~F~~ILnyLR~G~l~lp~ 81 (214)
-.-|+|.|| |+.|..+|..|+..+.+|++||++++... ..+.+-+ |-+|..|+.+|+|+++|++.++.
T Consensus 32 ~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~--~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~ 109 (279)
T 3i3n_A 32 FCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSES--RSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVST 109 (279)
T ss_dssp TCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC----------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEET
T ss_pred CCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccc--cCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccCH
Confidence 346889999 99999999999999999999999876432 2456666 78999999999999999999876
Q ss_pred CchhHHHHHHhhcccCchhHHHHHHHHHHHh
Q psy33 82 NPKDVAELLAEAKYYCITELTDLCEQTIKRK 112 (214)
Q Consensus 82 ~~~e~~~Ll~EA~fy~L~~Lv~~c~~~L~~~ 112 (214)
+ ++..++..|.+|++++|.+.|.+.|.+.
T Consensus 110 ~--~v~~ll~~A~~l~i~~L~~~c~~~L~~~ 138 (279)
T 3i3n_A 110 G--SVHEVLELADRFLLIRLKEFCGEFLKKK 138 (279)
T ss_dssp T--THHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHCcHHHHHHHHHHHHHc
Confidence 5 4799999999999999999999999864
No 27
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=98.89 E-value=1.1e-09 Score=95.54 Aligned_cols=97 Identities=25% Similarity=0.324 Sum_probs=80.8
Q ss_pred CceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEE-cCCCCchHHHhhchhcCceecCCCchhHHHHH
Q psy33 12 CQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLI-DRCGKHFGIILNFLRDGQVSLPENPKDVAELL 90 (214)
Q Consensus 12 ~~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fI-DRdp~~F~~ILnyLR~G~l~lp~~~~e~~~Ll 90 (214)
-.-|+|.|||+.|.++|..|+..+++|++||.+.+... ....+-+ |-+|..|+.+|+|+++|.++++. ..+..|+
T Consensus 174 ~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~--~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~--~~~~~ll 249 (312)
T 3hqi_A 174 FTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEES--KKNRVEINDVEPEVFKEMMCFIYTGKAPNLD--KMADDLL 249 (312)
T ss_dssp SCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-------CCSEEEECSSCHHHHHHHHHHHHHSCCTTHH--HHHHHHH
T ss_pred CCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCcccc--CCceEEecCCCHHHHHHHHHhhcCCCCCChH--HHHHHHH
Confidence 45799999999999999999999999999999876432 2344544 78999999999999999987655 4589999
Q ss_pred HhhcccCchhHHHHHHHHHHHh
Q psy33 91 AEAKYYCITELTDLCEQTIKRK 112 (214)
Q Consensus 91 ~EA~fy~L~~Lv~~c~~~L~~~ 112 (214)
..|++|+++.|.+.|++.|.+.
T Consensus 250 ~~A~~~~~~~l~~~c~~~l~~~ 271 (312)
T 3hqi_A 250 AAADKYALERLKVMCEDALCSN 271 (312)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhCHHHHHHHHHHHHHcc
Confidence 9999999999999999999754
No 28
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=98.78 E-value=3.1e-09 Score=80.75 Aligned_cols=82 Identities=16% Similarity=0.150 Sum_probs=70.0
Q ss_pred ceEEEEECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEE-EcCCCCchHHHhhchhcCce-ecCCCchhHHHHH
Q psy33 13 QYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVL-IDRCGKHFGIILNFLRDGQV-SLPENPKDVAELL 90 (214)
Q Consensus 13 ~~V~LNVGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~f-IDRdp~~F~~ILnyLR~G~l-~lp~~~~e~~~Ll 90 (214)
.-|+|.|||+.|..+|..|+..+++|++||.+. ...+- -|-+|..|+.+|+|+++|++ .++. .++..++
T Consensus 32 ~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-------~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~--~~~~~ll 102 (116)
T 3fkc_A 32 CDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-------GQVVELSFIRAEIFAEILNYIYSSKIVRVRS--DLLDELI 102 (116)
T ss_dssp CCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-------CSEEEECSSCHHHHHHHHHHHTTSCCCSCCH--HHHHHHH
T ss_pred eeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-------CCEEEeCCCCHHHHHHHHHhhcCCCcCCCCH--HHHHHHH
Confidence 467889999999999999999999999999864 23443 36899999999999999998 4654 4589999
Q ss_pred HhhcccCchhHHH
Q psy33 91 AEAKYYCITELTD 103 (214)
Q Consensus 91 ~EA~fy~L~~Lv~ 103 (214)
..|++|+++.|.+
T Consensus 103 ~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 103 KSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHTCHHHHT
T ss_pred HHHHHhCccccCc
Confidence 9999999999875
No 29
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=97.86 E-value=1.2e-05 Score=64.53 Aligned_cols=97 Identities=16% Similarity=0.256 Sum_probs=73.0
Q ss_pred EEEEE-CCeEEEeeHHhhcCCCcchhhhhcC-CCccccCCCceEEE-cCCCCchHHHhhchhcCcee-------------
Q psy33 15 VKLNV-GGSLHYTTIGTLTKHDTMLRAMFSG-RMEILTDSEGWVLI-DRCGKHFGIILNFLRDGQVS------------- 78 (214)
Q Consensus 15 V~LNV-GG~~F~Ttr~TL~k~~s~L~~mfs~-~~~~~~d~~g~~fI-DRdp~~F~~ILnyLR~G~l~------------- 78 (214)
|+|.. +|+.|.+++.. ++.+.+|+.||.+ +..- ....+.+-+ +-++..++.|+.|+++++-.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~-e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~ 80 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDD-EGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKR 80 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS-------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcc-cccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccc
Confidence 77864 79999999998 6678999999986 3220 012244545 78999999999999998711
Q ss_pred -----------cCCCchhHHHHHHhhcccCchhHHHHHHHHHHHhh
Q psy33 79 -----------LPENPKDVAELLAEAKYYCITELTDLCEQTIKRKQ 113 (214)
Q Consensus 79 -----------lp~~~~e~~~Ll~EA~fy~L~~Lv~~c~~~L~~~~ 113 (214)
+.-+...+.+|+..|.|++|.+|+++|...+.+.-
T Consensus 81 ~~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i 126 (159)
T 2ast_A 81 TDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMI 126 (159)
T ss_dssp CCCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 12233568999999999999999999999887654
No 30
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=96.99 E-value=0.00048 Score=54.09 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=70.8
Q ss_pred EEEEE-CCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceE-EEcCCCCchHHHhhchhcCce-e-------------
Q psy33 15 VKLNV-GGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWV-LIDRCGKHFGIILNFLRDGQV-S------------- 78 (214)
Q Consensus 15 V~LNV-GG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~-fIDRdp~~F~~ILnyLR~G~l-~------------- 78 (214)
|+|.- +|+.|.+++.. ++.+.+++.|+++.. ++.+ +-+-++..++.|+.|++..+- +
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~------~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 76 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG------MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 76 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC------CSSEECTTCCHHHHHHHHHHHHHHTTCC-------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC------CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccch
Confidence 66766 69999999997 566889999997421 2334 447899999999999998651 1
Q ss_pred ----------cCCCchhHHHHHHhhcccCchhHHHHHHHHHHHhh
Q psy33 79 ----------LPENPKDVAELLAEAKYYCITELTDLCEQTIKRKQ 113 (214)
Q Consensus 79 ----------lp~~~~e~~~Ll~EA~fy~L~~Lv~~c~~~L~~~~ 113 (214)
+.-+...+.+|+..|.|++|.+|+++|...+...-
T Consensus 77 ~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~i 121 (141)
T 1fs1_B 77 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMI 121 (141)
T ss_dssp ----HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 12233467899999999999999999998887643
No 31
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=96.92 E-value=0.00014 Score=58.37 Aligned_cols=94 Identities=17% Similarity=0.206 Sum_probs=46.5
Q ss_pred CceEEEEE-CCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceE-EEcCCCCchHHHhhchhcCce------------
Q psy33 12 CQYVKLNV-GGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWV-LIDRCGKHFGIILNFLRDGQV------------ 77 (214)
Q Consensus 12 ~~~V~LNV-GG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~-fIDRdp~~F~~ILnyLR~G~l------------ 77 (214)
+..|+|.- +|+.|.+++.. ++.+.+++.|+.+.. .++.+ +-+-++..++.|+.|+++.+-
T Consensus 3 ~~~v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~-----~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~ 76 (160)
T 2p1m_A 3 AKKIVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC-----VDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGA 76 (160)
T ss_dssp -----CCC---------CHH-HHTCTTTC-----------------CCTTSCHHHHHHHHHC------------------
T ss_pred CCEEEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC-----CCCceeCCcCcHHHHHHHHHHHHHcccCCCccccccccc
Confidence 45678875 69999999998 556788999997531 12334 337899999999999998752
Q ss_pred ---------------ecCCCchhHHHHHHhhcccCchhHHHHHHHHHHHhh
Q psy33 78 ---------------SLPENPKDVAELLAEAKYYCITELTDLCEQTIKRKQ 113 (214)
Q Consensus 78 ---------------~lp~~~~e~~~Ll~EA~fy~L~~Lv~~c~~~L~~~~ 113 (214)
.++ ...+.+|+..|.|++|.+|+++|...+...-
T Consensus 77 ~~~~~~i~~wD~~Fl~vd--~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~i 125 (160)
T 2p1m_A 77 ATSDDDLKAWDADFMKID--QATLFELILAANYLNIKNLLDLTCQTVADMI 125 (160)
T ss_dssp --------------------------CHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccccchhhHHHHHHHcCC--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 222 2346889999999999999999998887643
No 32
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=96.50 E-value=0.0021 Score=47.10 Aligned_cols=81 Identities=17% Similarity=0.217 Sum_probs=57.5
Q ss_pred eEEEEE-CCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEE-cCCCCchHHHhhchh-----c---Ccee---cC
Q psy33 14 YVKLNV-GGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLI-DRCGKHFGIILNFLR-----D---GQVS---LP 80 (214)
Q Consensus 14 ~V~LNV-GG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fI-DRdp~~F~~ILnyLR-----~---G~l~---lp 80 (214)
+|+|-- +|+.|.++|.. ++.+.+|++||++........++.+-+ +-++...+.|++|++ + +.++ ++
T Consensus 3 ~v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~ 81 (97)
T 4ajy_C 3 YVKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA 81 (97)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCC
T ss_pred EEEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCC
Confidence 455554 69999999998 777899999998631111123455654 689999999999999 3 5555 55
Q ss_pred CCchhHHHHHHhhcccC
Q psy33 81 ENPKDVAELLAEAKYYC 97 (214)
Q Consensus 81 ~~~~e~~~Ll~EA~fy~ 97 (214)
++ .+.+|+..|.|++
T Consensus 82 ~~--~l~eLl~AAnyL~ 96 (97)
T 4ajy_C 82 PE--IALELLMAANFLD 96 (97)
T ss_dssp GG--GHHHHHHHHHHHT
T ss_pred HH--HHHHHHHHHhhhC
Confidence 43 5799999999876
No 33
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=94.88 E-value=0.075 Score=42.79 Aligned_cols=100 Identities=14% Similarity=0.166 Sum_probs=69.5
Q ss_pred CceEEEEEC-CeEEEeeHHhhcCCCcchhhhhcCCCc--cccCCCceEEE-cCCCCchHHHhhchhcCce-ecC------
Q psy33 12 CQYVKLNVG-GSLHYTTIGTLTKHDTMLRAMFSGRME--ILTDSEGWVLI-DRCGKHFGIILNFLRDGQV-SLP------ 80 (214)
Q Consensus 12 ~~~V~LNVG-G~~F~Ttr~TL~k~~s~L~~mfs~~~~--~~~d~~g~~fI-DRdp~~F~~ILnyLR~G~l-~lp------ 80 (214)
.+.|+|--. |+.|.+.+... +.+..++.|+.+... ...++.+.+-+ +.++..++.|+.|+...+- +.|
T Consensus 6 ~~~i~L~SsDG~~F~V~~~vA-~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~ 84 (169)
T 3v7d_A 6 TSNVVLVSGEGERFTVDKKIA-ERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDD 84 (169)
T ss_dssp CCEEEEECTTCCEEEEEHHHH-TTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC-----
T ss_pred CCeEEEEeCCCCEEEecHHHH-HHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccccc
Confidence 467777665 99999999974 446788888874321 10122255655 7899999999999987542 111
Q ss_pred ----------------CCchhHHHHHHhhcccCchhHHHHHHHHHHHh
Q psy33 81 ----------------ENPKDVAELLAEAKYYCITELTDLCEQTIKRK 112 (214)
Q Consensus 81 ----------------~~~~e~~~Ll~EA~fy~L~~Lv~~c~~~L~~~ 112 (214)
-+...+-+|+..|.|++|.+|++++...+...
T Consensus 85 ~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ 132 (169)
T 3v7d_A 85 SRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEM 132 (169)
T ss_dssp ---CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 12245678999999999999999988877653
No 34
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=92.65 E-value=0.28 Score=35.93 Aligned_cols=83 Identities=20% Similarity=0.265 Sum_probs=57.7
Q ss_pred CceEEEEE-CCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEE-cCCCCchHHHhhchhcCce---------ecC
Q psy33 12 CQYVKLNV-GGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLI-DRCGKHFGIILNFLRDGQV---------SLP 80 (214)
Q Consensus 12 ~~~V~LNV-GG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fI-DRdp~~F~~ILnyLR~G~l---------~lp 80 (214)
++.|+|.- .|..|.+.+.. ++.+..++.|++++. .++++.+=+ +-++...+.|+.|+...+- .+|
T Consensus 3 ~~~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~---e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~ 78 (99)
T 1hv2_A 3 QDFVTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF---RESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIP 78 (99)
T ss_dssp CSEEEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST---TTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCC
T ss_pred CcEEEEEecCCCEEEECHHH-HHHhHHHHHHHhccc---ccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCC
Confidence 56788888 79999999996 556788999998632 223355545 7899999999999987541 111
Q ss_pred C---CchhHHHHHHhhcccCc
Q psy33 81 E---NPKDVAELLAEAKYYCI 98 (214)
Q Consensus 81 ~---~~~e~~~Ll~EA~fy~L 98 (214)
+ +...+-+|+..|.|.+|
T Consensus 79 ~w~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 79 EFEIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp CCCCCHHHHHHHHHHHHHHCC
T ss_pred CccCCHHHHHHHHHHHHHhCc
Confidence 1 22345666667766653
No 35
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=91.02 E-value=0.27 Score=35.77 Aligned_cols=82 Identities=17% Similarity=0.175 Sum_probs=54.2
Q ss_pred eEEEEE-CCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEE-cCCCCchHHHhhchhcCc-----------eecC
Q psy33 14 YVKLNV-GGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLI-DRCGKHFGIILNFLRDGQ-----------VSLP 80 (214)
Q Consensus 14 ~V~LNV-GG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fI-DRdp~~F~~ILnyLR~G~-----------l~lp 80 (214)
+|+|.- .|..|.+.+.. ++.+.+++.|+++......++++.+=+ +-++...+.|+.|+...+ ..++
T Consensus 2 ~v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd 80 (96)
T 2fnj_C 2 YVKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA 80 (96)
T ss_dssp EEEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCC
T ss_pred eEEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccC
Confidence 567766 69999999996 556788999997521111112345544 789999999999998643 1122
Q ss_pred CCchhHHHHHHhhcccCc
Q psy33 81 ENPKDVAELLAEAKYYCI 98 (214)
Q Consensus 81 ~~~~e~~~Ll~EA~fy~L 98 (214)
. ..+-+|+..|.|.+|
T Consensus 81 ~--~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 81 P--EIALELLMAANFLDC 96 (96)
T ss_dssp T--TTHHHHHHHHHHHTC
T ss_pred H--HHHHHHHHHHHHhCc
Confidence 2 346778888887654
No 36
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=87.81 E-value=0.37 Score=36.21 Aligned_cols=90 Identities=20% Similarity=0.231 Sum_probs=54.2
Q ss_pred CCCCCceEEEE-ECCeEEEeeHHhhcCCCcchhhhhcCCCccccCCCceEEE-cCCCCchHHHhhchhcCce------ec
Q psy33 8 SGNPCQYVKLN-VGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLI-DRCGKHFGIILNFLRDGQV------SL 79 (214)
Q Consensus 8 ~~~~~~~V~LN-VGG~~F~Ttr~TL~k~~s~L~~mfs~~~~~~~d~~g~~fI-DRdp~~F~~ILnyLR~G~l------~l 79 (214)
.++++..|+|. -.|..|.+.+... +.+..++.|+.+......+.++.+=+ .-++...+.|+.|+...+- .+
T Consensus 12 ~~~~~~~v~L~SsDG~~F~V~~~~A-~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i 90 (112)
T 1vcb_B 12 EGPDAMYVKLISSDGHEFIVKREHA-LTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEI 90 (112)
T ss_dssp -----CEEEEECTTSCEEEEEHHHH-HTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred cCCCCCEEEEEcCCCCEEEECHHHH-HHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCC
Confidence 35567889998 7799999999964 44678888987421111112345544 6899999999999986431 12
Q ss_pred CC---CchhHHHHHHhhcccCc
Q psy33 80 PE---NPKDVAELLAEAKYYCI 98 (214)
Q Consensus 80 p~---~~~e~~~Ll~EA~fy~L 98 (214)
|+ +...+-+|+..|.|.+|
T Consensus 91 ~~w~vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 91 PEFPIAPEIALELLMAANFLDC 112 (112)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHhCc
Confidence 11 22346667777777654
No 37
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=78.26 E-value=3.7 Score=32.89 Aligned_cols=75 Identities=15% Similarity=0.080 Sum_probs=53.2
Q ss_pred eeeccCHHHHHHHHh-cCCCCEEEEEEEeeCCeeEeeccChhHHhhhhcccceeeeeecceEEEEe-eccCCCc------
Q psy33 122 VPLITSLKEEQLLLN-ATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIK-DVIGSSE------ 193 (214)
Q Consensus 122 v~~i~~~~e~~~~i~-~~~k~~~~~~~~~~~~~ysy~~~~~~~~l~n~e~fd~l~~~~~~~v~~~k-~~~~~~~------ 193 (214)
++.+++.++..+.|. .+++||++-.+-. | ...=..+. ++|++|+-.+.+++.|+| ||....+
T Consensus 23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~--W------CgPCk~m~--PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~ 92 (160)
T 2av4_A 23 LQHLNSGWAVDQAIVNEDERLVCIRFGHD--Y------DPDCMKMD--ELLYKVADDIKNFCVIYLVDITEVPDFNTMYE 92 (160)
T ss_dssp CEECCSHHHHHHHHHHCSSSEEEEEEECT--T------SHHHHHHH--HHHHHHHHHHTTTEEEEEEETTTCCTTTTTTT
T ss_pred hhccCCHHHHHHHHHhcCCCEEEEEEECC--C------ChhHHHHH--HHHHHHHHHccCCcEEEEEECCCCHHHHHHcC
Confidence 577888888776665 5888887744321 1 11122233 688999999999999999 8876554
Q ss_pred ---eeeeEEeeCceeE
Q psy33 194 ---ICCWSFFGHGKKI 206 (214)
Q Consensus 194 ---~~~~~~~~~~~~~ 206 (214)
+|..-||=.|+.+
T Consensus 93 V~siPT~~fFk~G~~v 108 (160)
T 2av4_A 93 LYDPVSVMFFYRNKHM 108 (160)
T ss_dssp CCSSEEEEEEETTEEE
T ss_pred CCCCCEEEEEECCEEE
Confidence 8999888888776
No 38
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=37.64 E-value=20 Score=26.07 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=40.7
Q ss_pred CHHHHHHHHhcCCCCEEEEEEEeeCCeeEeeccChhHHhhhhcccceeeeeecceEEEEe-eccCCC---------c--e
Q psy33 127 SLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIK-DVIGSS---------E--I 194 (214)
Q Consensus 127 ~~~e~~~~i~~~~k~~~~~~~~~~~~~ysy~~~~~~~~l~n~e~fd~l~~~~~~~v~~~k-~~~~~~---------~--~ 194 (214)
+.+...+++ .+.+|++..++.. ...-..+. ..|++++-.|.|++.|+| |+.... . +
T Consensus 12 t~~~f~~~~-~~~~pv~v~f~a~---------~~~c~~~~--p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi~~~~i 79 (133)
T 2djk_A 12 GPETYSDYM-SAGIPLAYIFAET---------AEERKELS--DKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKF 79 (133)
T ss_dssp CHHHHHHHH-HTTSCEEEEECSC---------SSSHHHHH--HHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSS
T ss_pred ChHHHHHHh-cCCCCEEEEEecC---------hhhHHHHH--HHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCCCcccC
Confidence 333444554 4668887765422 11112233 488999999999999999 764322 2 7
Q ss_pred eeeEEeeC--cee
Q psy33 195 CCWSFFGH--GKK 205 (214)
Q Consensus 195 ~~~~~~~~--~~~ 205 (214)
..--+|-. |+|
T Consensus 80 Ptl~i~~~~~g~~ 92 (133)
T 2djk_A 80 PAFAIQEVAKNQK 92 (133)
T ss_dssp SEEEEECTTTCCB
T ss_pred CEEEEEecCcCcc
Confidence 77777754 554
No 39
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=35.64 E-value=60 Score=26.25 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=16.2
Q ss_pred eeeeecceEEEEeeccCCC
Q psy33 174 LALRFSGRLLFIKDVIGSS 192 (214)
Q Consensus 174 l~~~~~~~v~~~k~~~~~~ 192 (214)
+++.++|-.+.||...|..
T Consensus 111 vsv~~~~nlvVIkT~PG~A 129 (180)
T 3v4g_A 111 LDVDHNQALVVIHTGPGAA 129 (180)
T ss_dssp EEEEECSSCEEEEESTTCH
T ss_pred EEEeecCCEEEEEeCCCcH
Confidence 3788999999999999853
No 40
>1rki_A Hypothetical protein; structural genomics, (beta-alpha-beta)X2, beta-loop-beta-BET motif, unknown function; HET: P6G PG4; 1.60A {Pyrobaculum aerophilum} SCOP: d.308.1.2
Probab=34.03 E-value=16 Score=26.84 Aligned_cols=27 Identities=41% Similarity=0.732 Sum_probs=19.2
Q ss_pred Hhhhhcccceee----------eeecceEEEEeeccC
Q psy33 164 LLKNIELFDKLA----------LRFSGRLLFIKDVIG 190 (214)
Q Consensus 164 ~l~n~e~fd~l~----------~~~~~~v~~~k~~~~ 190 (214)
+.||+|.||..+ +.==|-++|||-+.|
T Consensus 63 liK~vE~~d~Vs~s~Psc~~crvv~iG~~yFv~~~~~ 99 (102)
T 1rki_A 63 LVKNIEIFDEVHNSKPNCDKCLIVEIGGVYFVRRVNG 99 (102)
T ss_dssp TEEEEEEESEEESSCCCCSSEEEEEETTEEEEEECTT
T ss_pred HHhcEEEeccccccCCCCCceEEEEEcCEEEEEeccC
Confidence 458999999876 334466788886554
No 41
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=24.32 E-value=3e+02 Score=22.61 Aligned_cols=77 Identities=13% Similarity=0.085 Sum_probs=45.2
Q ss_pred eeeeccCHHHHHHHHhc--CCCCEEEEEEEeeCCeeEeeccChhHHhhhhcccceeeeeecceEEEEe-ec--------c
Q psy33 121 RVPLITSLKEEQLLLNA--TAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIK-DV--------I 189 (214)
Q Consensus 121 ~v~~i~~~~e~~~~i~~--~~k~~~~~~~~~~~~~ysy~~~~~~~~l~n~e~fd~l~~~~~~~v~~~k-~~--------~ 189 (214)
.|..|.+.++..+.|.. ..+|||+.+|.. +...- ..+. ..|++|+-.|.+ |.|+| |+ +
T Consensus 113 ~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~------wC~~C--k~l~--p~l~~La~~~~~-v~f~kVd~d~~~l~~~~ 181 (245)
T 1a0r_P 113 FVYELESGEQFLETIEKEQKITTIVVHIYED------GIKGC--DALN--SSLICLAAEYPM-VKFCKIKASNTGAGDRF 181 (245)
T ss_dssp SEEECCSHHHHHHHHHSSCTTCEEEEEEECT------TSTTH--HHHH--HHHHHHHHHCTT-SEEEEEEHHHHCCTTSS
T ss_pred eEEEeCCHHHHHHHHHHhcCCCEEEEEEECC------CChHH--HHHH--HHHHHHHHHCCC-CEEEEEeCCcHHHHHHC
Confidence 35556677777777765 366777655532 11111 1111 356667666665 77776 43 2
Q ss_pred CCCceeeeEEeeCceeEeE
Q psy33 190 GSSEICCWSFFGHGKKIAE 208 (214)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~ 208 (214)
+-.-+++--||-.|+.+..
T Consensus 182 ~I~~~PTll~~~~G~~v~~ 200 (245)
T 1a0r_P 182 SSDVLPTLLVYKGGELLSN 200 (245)
T ss_dssp CTTTCSEEEEEETTEEEEE
T ss_pred CCCCCCEEEEEECCEEEEE
Confidence 3346778888888887654
Done!