RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy33
         (214 letters)



>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare
           (Aplysia californica) [TaxId: 6500]}
          Length = 100

 Score = 90.7 bits (225), Expect = 2e-24
 Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 2/88 (2%)

Query: 15  VKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLR 73
           V +NV G    T + TL +  DT+L      R             DR    F  IL F +
Sbjct: 3   VVINVSGLRFETQLKTLNQFPDTLLGNPQK-RNRYYDPLRNEYFFDRNRPSFDAILYFYQ 61

Query: 74  DGQVSLPENPKDVAELLAEAKYYCITEL 101
            G          +     E K+Y + E 
Sbjct: 62  SGGRLRRPVNVPLDVFSEEIKFYELGEN 89


>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 105

 Score = 88.4 bits (219), Expect = 2e-23
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 6/106 (5%)

Query: 15  VKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLR 73
           + LNV G+   T   TL ++ DT+L +    R             DR    F  ILNF R
Sbjct: 2   IVLNVSGTRFQTWQDTLERYPDTLLGSSE--RDFFYHPETQQYFFDRDPDIFRHILNFYR 59

Query: 74  DGQVSLPENPKDVAELLAEAKYYCITE--LTDLCEQTIKRKQRETE 117
            G++  P +   ++    E  ++ +    + D C +  K ++RE  
Sbjct: 60  TGKLHYPRHE-CISAYDEELAFFGLIPEIIGDCCYEEYKDRRRENA 104


>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel
           {California sea hare (Aplysia californica) [TaxId:
           6500]}
          Length = 103

 Score = 79.6 bits (196), Expect = 4e-20
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 2/92 (2%)

Query: 15  VKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRD 74
           V +NVGG  H T   TL K      +  +  M            DR    F  I+N+ R 
Sbjct: 4   VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINYYRS 63

Query: 75  GQVSLPENPKDVAELLAEAKYYCITE-LTDLC 105
           G++  P +         E +++ +     + C
Sbjct: 64  GKLHYPTDV-CGPLFEEELEFWGLDSNQVEPC 94


>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
           protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 35.8 bits (82), Expect = 9e-04
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 3/78 (3%)

Query: 34  HDTMLRAMFSGRMEILTDSEGWVLI-DRCGKHFGIILNFLRDGQVSLPENPKDVAELLAE 92
           H T+L         +   +     +     K F  IL +     +      +D+ +LL  
Sbjct: 43  HRTVLACTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATL--QAKAEDLDDLLYA 100

Query: 93  AKYYCITELTDLCEQTIK 110
           A+   I  L + C + ++
Sbjct: 101 AEILEIEYLEEQCLKMLE 118


>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor,
           TRCF {Escherichia coli [TaxId: 562]}
          Length = 117

 Score = 24.5 bits (53), Expect = 7.0
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 8/80 (10%)

Query: 42  FSGRMEILTDSEGWV-----LIDRCGKHFGIILNF--LRDGQVSLPENPKDVAELLAEAK 94
           F G +    +SEG       L+ R       I+      D    L     +   +     
Sbjct: 33  FDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRN 92

Query: 95  YYCITELTDLCEQTIKRKQR 114
              I E +DL  + + R+++
Sbjct: 93  LALICE-SDLLGERVARRRQ 111


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0599    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 807,222
Number of extensions: 36309
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 7
Length of query: 214
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 132
Effective length of database: 1,281,736
Effective search space: 169189152
Effective search space used: 169189152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)