BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3300
(97 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KNO|A Chain A, Nmr Solution Structure Of Sh2 Domain Of The Human Tensin
Like C1 Domain Containing Phosphatase (Tenc1)
Length = 131
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 12/101 (11%)
Query: 1 MIQEITLEVLSQEPVGAFMVRESTTKPGCFALSLRV----PKEFHHLG------IAHYLI 50
+ ++ + +L + GAF++R+S + G + L+L+V P G + H+LI
Sbjct: 27 LSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQLVRHFLI 86
Query: 51 LRTAKGYKIKGFTKE--FSSLTSLITHHSVMPELLPCTLSL 89
KG KIKG E F SL++L++ HS+ P LPC L +
Sbjct: 87 ETGPKGVKIKGCPSEPYFGSLSALVSQHSISPISLPCCLRI 127
>pdb|2L6K|A Chain A, Solution Structure Of A Nonphosphorylated Peptide
Recognizing Domain
Length = 123
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 12/99 (12%)
Query: 3 QEITLEVLSQEPVGAFMVRESTTKPGCFALSLRV----PKEFHHLG------IAHYLILR 52
++ + +L + GAF++R+S + G + L+L+V P G + H+LI
Sbjct: 14 RDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQLVRHFLIET 73
Query: 53 TAKGYKIKGFTKE--FSSLTSLITHHSVMPELLPCTLSL 89
KG KIKG E F SL++L++ HS+ P LPC L +
Sbjct: 74 GPKGVKIKGCPSEPYFGSLSALVSQHSISPISLPCCLRI 112
>pdb|2ECD|A Chain A, Solution Structure Of The Human Abl2 Sh2 Domain
Length = 119
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G+F+VRES + PG ++SLR + HY I TA G FS+L L+ H
Sbjct: 38 GSFLVRESESSPGQLSISLRYEGR-----VYHYRINTTADGKVYVTAESRFSTLAELVHH 92
Query: 76 HSVMPELLPCTL 87
HS + + L TL
Sbjct: 93 HSTVADGLVTTL 104
>pdb|4F59|A Chain A, Triple Mutant Src Sh2 Domain
pdb|4F5A|A Chain A, Triple Mutant Src Sh2 Domain Bound To Phosphate Ion
pdb|4F5B|A Chain A, Triple Mutant Src Sh2 Domain Bound To Phosphotyrosine
Length = 112
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 11 SQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILR-TAKGYKIKGFTKEFSSL 69
++ P G F+VRES T G +ALS+ L + HYLI + + G+ I T +F+SL
Sbjct: 28 AENPRGTFLVRESETVKGAYALSVSDFDNAKGLNVKHYLIRKLDSGGFYITSRT-QFNSL 86
Query: 70 TSLITHHS 77
L+ ++S
Sbjct: 87 QQLVAYYS 94
>pdb|1JYQ|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A
Highly Affine Phospho Peptide
pdb|1JYQ|B Chain B, Xray Structure Of Grb2 Sh2 Domain Complexed With A
Highly Affine Phospho Peptide
pdb|1JYR|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A
Phosphorylated Peptide
pdb|1JYU|A Chain A, Xray Structure Of Grb2 Sh2 Domain
Length = 96
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 8 EVLS-QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEF 66
E+LS Q GAF++RES + PG F+LS++ + + H+ +LR G K + +F
Sbjct: 17 EMLSKQRHDGAFLIRESESAPGDFSLSVKFGND-----VQHFKVLRDGAG-KYFLWVVKF 70
Query: 67 SSLTSLITHH 76
+SL L+ +H
Sbjct: 71 NSLNELVDYH 80
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 8 EVLS-QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEF 66
E+LS Q GAF++RES + PG F+LS++ + + H+ +LR G K + +F
Sbjct: 72 EMLSKQRHDGAFLIRESESAPGDFSLSVKFGND-----VQHFKVLRDGAG-KYFLWVVKF 125
Query: 67 SSLTSLITHH 76
+SL L+ +H
Sbjct: 126 NSLNELVDYH 135
>pdb|2AOA|A Chain A, Crystal Structures Of A High-affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOA|B Chain B, Crystal Structures Of A High-affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|A Chain A, Crystal Structures Of A High-Affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|B Chain B, Crystal Structures Of A High-Affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|C Chain C, Crystal Structures Of A High-Affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|D Chain D, Crystal Structures Of A High-Affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
Length = 99
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 8 EVLS-QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEF 66
E+LS Q GAF++RES + PG F+LS++ + + H+ +LR G K + +F
Sbjct: 18 EMLSKQRHDGAFLIRESESAPGDFSLSVKFGND-----VQHFKVLRDGAG-KYFLWVVKF 71
Query: 67 SSLTSLITHH 76
+SL L+ +H
Sbjct: 72 NSLNELVDYH 81
>pdb|1GHU|A Chain A, Nmr Solution Structure Of Growth Factor Receptor-Bound
Protein 2 (Grb2) Sh2 Domain, 24 Structures
Length = 107
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 8 EVLS-QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEF 66
E+LS Q GAF++RES + PG F+LS++ + + H+ +LR G K + +F
Sbjct: 15 EMLSKQRHDGAFLIRESESAPGDFSLSVKFGND-----VQHFKVLRDGAG-KYFLWVVKF 68
Query: 67 SSLTSLITHH 76
+SL L+ +H
Sbjct: 69 NSLNELVDYH 78
>pdb|1KC2|A Chain A, Structure Of The Triple (Lys(Beta)d3ala, Asp(Beta)c8ala,
Aspcd2ala) Mutant Of The Src Sh2 Domain Bound To The
Pqpyeeipi Peptide
Length = 103
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 12 QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILR-TAKGYKIKGFTKEFSSLT 70
+ P G F+VRES T G + LS+ L +AHY I + + G+ I T +FSSL
Sbjct: 22 ENPRGTFLVRESETTKGAYCLSVSAFANAKGLNVAHYKIRKLDSGGFYITSRT-QFSSLQ 80
Query: 71 SLITHHS 77
L+ ++S
Sbjct: 81 QLVAYYS 87
>pdb|1CJ1|A Chain A, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|B Chain B, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|C Chain C, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|D Chain D, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|F Chain F, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|G Chain G, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|H Chain H, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|I Chain I, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|J Chain J, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|K Chain K, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|L Chain L, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
Length = 96
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 8 EVLS-QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEF 66
E+LS Q GAF++RES + PG F+LS++ + + H+ +LR G K + +F
Sbjct: 16 EMLSKQRHDGAFLIRESESAPGDFSLSVKFGND-----VQHFKVLRDGAG-KYFLWVVKF 69
Query: 67 SSLTSLITHH 76
+SL L+ +H
Sbjct: 70 NSLNELVDYH 79
>pdb|1BMB|A Chain A, Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-974)
Length = 123
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 8 EVLS-QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEF 66
E+LS Q GAF++RES + PG F+LS++ + + H+ +LR G K + +F
Sbjct: 27 EMLSKQRHDGAFLIRESESAPGDFSLSVKFGND-----VQHFKVLRDGAG-KYFLWVVKF 80
Query: 67 SSLTSLITHH 76
+SL L+ +H
Sbjct: 81 NSLNELVDYH 90
>pdb|3MXC|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes
Reveal A Conformational Switch And Their Functional
Implications.
pdb|3MXY|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes
Reveal A Conformational Switch And Their Functional
Implications
Length = 101
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 8 EVLS-QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEF 66
E+LS Q GAF++RES + PG F+LS++ + + H+ +LR G K + +F
Sbjct: 21 EMLSKQRHDGAFLIRESESAPGDFSLSVKFGND-----VQHFKVLRDGAG-KYFLWVVKF 74
Query: 67 SSLTSLITHH 76
+SL L+ +H
Sbjct: 75 NSLNELVDYH 84
>pdb|1TZE|E Chain E, Signal Transduction Adaptor Growth Factor, Grb2 Sh2
Domain Complexed With Phosphotyrosyl Heptapeptide
Lys-Pro-Phe-Ptyr-Val-Asn-Val-Nh2 (Kfppyvnc-Nh2)
pdb|3N7Y|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 20-Membered Macrocyclic Ligand Having The Sequence
Pyvnv
pdb|3N7Y|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 20-Membered Macrocyclic Ligand Having The Sequence
Pyvnv
pdb|3N7Y|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 20-Membered Macrocyclic Ligand Having The Sequence
Pyvnv
Length = 98
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 8 EVLS-QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEF 66
E+LS Q GAF++RES + PG F+LS++ + + H+ +LR G K + +F
Sbjct: 18 EMLSKQRHDGAFLIRESESAPGDFSLSVKFGND-----VQHFKVLRDGAG-KYFLWVVKF 71
Query: 67 SSLTSLITHH 76
+SL L+ +H
Sbjct: 72 NSLNELVDYH 81
>pdb|1ZFP|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
Complexed With A Phosphotyrosyl Pentapeptide
Length = 98
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 8 EVLS-QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEF 66
E+LS Q GAF++RES + PG F+LS++ + + H+ +LR G K + +F
Sbjct: 17 EMLSKQRHDGAFLIRESESAPGDFSLSVKFGND-----VQHFKVLRDGAG-KYFLWVVKF 70
Query: 67 SSLTSLITHH 76
+SL L+ +H
Sbjct: 71 NSLNELVDYH 80
>pdb|1FYR|A Chain A, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|B Chain B, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|C Chain C, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|D Chain D, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
Length = 114
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 8 EVLS-QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEF 66
E+LS Q GAF++RES + PG F+LS++ + + H+ +LR G K + +F
Sbjct: 25 EMLSKQRHDGAFLIRESESAPGDFSLSVKFGND-----VQHFKVLRDGAG-KYFLWVVKF 78
Query: 67 SSLTSLITHH 76
+SL L+ +H
Sbjct: 79 NSLNELVDYH 88
>pdb|1X0N|A Chain A, Nmr Structure Of Growth Factor Receptor Binding Protein
Sh2 Domain Complexed With The Inhibitor
pdb|1QG1|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
Complexed With An Shc-Derived Peptide
Length = 104
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 8 EVLS-QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEF 66
E+LS Q GAF++RES + PG F+LS++ + + H+ +LR G K + +F
Sbjct: 17 EMLSKQRHDGAFLIRESESAPGDFSLSVKFGND-----VQHFKVLRDGAG-KYFLWVVKF 70
Query: 67 SSLTSLITHH 76
+SL L+ +H
Sbjct: 71 NSLNELVDYH 80
>pdb|2H46|E Chain E, Native Domain-Swapped Dimer Crystal Structure Of The
Grb2 Sh2 Domain
pdb|2H5K|A Chain A, Crystal Structure Of Complex Between The Domain-Swapped
Dimeric Grb2 Sh2 Domain And Shc-Derived Ligand,
Ac-Nh-Ptyr-Val-Asn-Nh2
pdb|2H5K|B Chain B, Crystal Structure Of Complex Between The Domain-Swapped
Dimeric Grb2 Sh2 Domain And Shc-Derived Ligand,
Ac-Nh-Ptyr-Val-Asn-Nh2
pdb|2HUW|A Chain A, X-Ray Crystal Structure Of The Grb2 Sh2 Domain Complexed
To A Constrained And Cyclopropane-Derived Ligand
pdb|2HUW|B Chain B, X-Ray Crystal Structure Of The Grb2 Sh2 Domain Complexed
To A Constrained And Cyclopropane-Derived Ligand
pdb|3C7I|A Chain A, X-Ray Crystal Structure Of The Complex Between The
Grb2-Sh2 Domain And A Flexible Ligand, Fptvn
Length = 116
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 8 EVLS-QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEF 66
E+LS Q GAF++RES + PG F+LS++ + + H+ +LR G K + +F
Sbjct: 20 EMLSKQRHDGAFLIRESESAPGDFSLSVKFGND-----VQHFKVLRDGAG-KYFLWVVKF 73
Query: 67 SSLTSLITHH 76
+SL L+ +H
Sbjct: 74 NSLNELVDYH 83
>pdb|3N84|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|D Chain D, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|E Chain E, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|F Chain F, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
Length = 112
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 8 EVLS-QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEF 66
E+LS Q GAF++RES + PG F+LS++ + + H+ +LR G K + +F
Sbjct: 21 EMLSKQRHDGAFLIRESESAPGDFSLSVKFGND-----VQHFKVLRDGAG-KYFLWVVKF 74
Query: 67 SSLTSLITHH 76
+SL L+ +H
Sbjct: 75 NSLNELVDYH 84
>pdb|3OVE|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Pyxn- Derived Tripeptide
Length = 117
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 8 EVLS-QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEF 66
E+LS Q GAF++RES + PG F+LS++ + + H+ +LR G K + +F
Sbjct: 20 EMLSKQRHDGAFLIRESESAPGDFSLSVKFGND-----VQHFKVLRDGAG-KYFLWVVKF 73
Query: 67 SSLTSLITHH 76
+SL L+ +H
Sbjct: 74 NSLNELVDYH 83
>pdb|3IMD|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IMD|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IMJ|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Cyclopropyl-Constrained Ac-Ptyr-Ile-Asn-Nh2
Tripeptide Mimic
pdb|3IMJ|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Cyclopropyl-Constrained Ac-Ptyr-Ile-Asn-Nh2
Tripeptide Mimic
pdb|3IN7|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Cyclopropyl-Constrained Ac-Py-Q-N-Nh2 Tripeptide
Mimic
pdb|3IN7|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Cyclopropyl-Constrained Ac-Py-Q-N-Nh2 Tripeptide
Mimic
pdb|3IN8|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Flexible Ac-Ptyr-Ile-Asn-Nh2 Tripeptide Mimic
pdb|3KFJ|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Flexible Ac-py-e-n-nh2 Tripeptide Mimic
pdb|3N8M|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
An Acyclic Ligand Having The Sequence Pyvnvp
pdb|3OV1|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Pyxn- Derived Tripeptide
pdb|3S8L|A Chain A, Protein-Ligand Interactions: Thermodynamic Effects
Associated With Increasing Hydrophobic Surface Area
pdb|3S8N|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Pyxn- Derived Tripeptide
pdb|3S8O|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Pyxn- Derived Tripeptide
Length = 117
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 8 EVLS-QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEF 66
E+LS Q GAF++RES + PG F+LS++ + + H+ +LR G K + +F
Sbjct: 20 EMLSKQRHDGAFLIRESESAPGDFSLSVKFGND-----VQHFKVLRDGAG-KYFLWVVKF 73
Query: 67 SSLTSLITHH 76
+SL L+ +H
Sbjct: 74 NSLNELVDYH 83
>pdb|1BM2|A Chain A, Grb2-Sh2 Domain In Complex With
Cyclo-[n-Alpha-Acetyl-L-Thi
Alysyl-O-Phosphotyrosyl-Valyl-Asparagyl-Valyl-Prolyl]
(Pkf273-791)
Length = 117
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 8 EVLS-QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEF 66
E+LS Q GAF++RES + PG F+LS++ + + H+ +LR G K + +F
Sbjct: 26 EMLSKQRHDGAFLIRESESAPGDFSLSVKFGND-----VQHFKVLRDGAG-KYFLWVVKF 79
Query: 67 SSLTSLITHH 76
+SL L+ +H
Sbjct: 80 NSLNELVDYH 89
>pdb|1FHS|A Chain A, The Three-Dimensional Solution Structure Of The Src
Homology Domain-2 Of The Growth Factor Receptor Bound
Protein-2, Nmr, 18 Structures
Length = 112
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 8 EVLS-QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEF 66
E+LS Q GAF++RES + PG F+LS++ + + H+ +LR G K + +F
Sbjct: 21 EMLSKQRHDGAFLIRESESAPGDFSLSVKFGND-----VQHFKVLRDGAG-KYFLWVVKF 74
Query: 67 SSLTSLITHH 76
+SL L+ +H
Sbjct: 75 NSLNELVDYH 84
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 14 PVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLI 73
P G F++RES T G ++LS+R + + HY I + G +F +L L+
Sbjct: 89 PRGTFLIRESETTKGAYSLSIRDWDDXKGDHVKHYKIRKLDNGGYYITTRAQFETLQQLV 148
Query: 74 THHSVMPELLPCTLSL 89
H+S + L L++
Sbjct: 149 QHYSEKADGLCFNLTV 164
>pdb|1AB2|A Chain A, Three-Dimensional Solution Structure Of The Src Homology
2 Domain Of C-Abl
Length = 109
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 9 VLSQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSS 68
+LS G+F+VRES + PG ++SLR + HY I + G F++
Sbjct: 24 LLSSGINGSFLVRESESSPGQRSISLRYEGR-----VYHYRINTASDGKLYVSSESRFNT 78
Query: 69 LTSLITHHSVMPELLPCTL 87
L L+ HHS + + L TL
Sbjct: 79 LAELVHHHSTVADGLITTL 97
>pdb|1AOT|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A
Phosphotyrosyl Peptide, Minimized Average Structure
pdb|1AOU|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A
Phosphotyrosyl Peptide, 22 Structures
Length = 106
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 14 PVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLI 73
P G F++RES T G ++LS+R + + HY I + G +F +L L+
Sbjct: 27 PRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFETLQQLV 86
Query: 74 THHSVMPELLPCTL 87
H+S L L
Sbjct: 87 QHYSERAAGLSSRL 100
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 14 PVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLI 73
P G F++RES T G ++LS+R + + HY I + G +F +L L+
Sbjct: 88 PRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFETLQQLV 147
Query: 74 THHSVMPELLPCTL 87
H+S L L
Sbjct: 148 QHYSERAAGLSSRL 161
>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase
Length = 163
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 9 VLSQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSS 68
+LS G+F+VRES + PG ++SLR + HY I + G F++
Sbjct: 85 LLSSGINGSFLVRESESSPGQRSISLRYEGR-----VYHYRINTASDGKLYVSSESRFNT 139
Query: 69 LTSLITHHSVMPELLPCTL 87
L L+ HHS + + L TL
Sbjct: 140 LAELVHHHSTVADGLITTL 158
>pdb|3K2M|A Chain A, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
pdb|3K2M|B Chain B, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
Length = 112
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 9 VLSQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSS 68
+LS G+F+VRES + PG ++SLR + HY I + G F++
Sbjct: 20 LLSSGINGSFLVRESESSPGQRSISLRYEGR-----VYHYRINTASDGKLYVSSESRFNT 74
Query: 69 LTSLITHHSVMPELLPCTL 87
L L+ HHS + + L TL
Sbjct: 75 LAELVHHHSTVADGLITTL 93
>pdb|1A1A|A Chain A, C-Src (Sh2 Domain With C188a Mutation) Complexed With
Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine)
pdb|1A1A|B Chain B, C-Src (Sh2 Domain With C188a Mutation) Complexed With
Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine)
Length = 107
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 11 SQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILR-TAKGYKIKGFTKEFSSL 69
++ P G F+VRES T G ++LS+ L + HY I + + G+ I T +F+SL
Sbjct: 26 AENPRGTFLVRESETTKGAYSLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRT-QFNSL 84
Query: 70 TSLITHHS 77
L+ ++S
Sbjct: 85 QQLVAYYS 92
>pdb|1SKJ|A Chain A, Cocrystal Structure Of Urea-Substituted Phosphopeptide
Complex
Length = 113
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 12 QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILR-TAKGYKIKGFTKEFSSLT 70
+ P G F+VRES T G + LS+ L + HY I + + G+ I T +FSSL
Sbjct: 24 ENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRT-QFSSLQ 82
Query: 71 SLITHHS 77
L+ ++S
Sbjct: 83 QLVAYYS 89
>pdb|1BKM|A Chain A, Cocrystal Structure Of D-Amino Acid Substituted
Phosphopeptide Complex
Length = 113
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 12 QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILR-TAKGYKIKGFTKEFSSLT 70
+ P G F+VRES T G + LS+ L + HY I + + G+ I T +FSSL
Sbjct: 24 ENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRT-QFSSLQ 82
Query: 71 SLITHHS 77
L+ ++S
Sbjct: 83 QLVAYYS 89
>pdb|1BKL|A Chain A, Self-Associated Apo Src Sh2 Domain
Length = 113
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 12 QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILR-TAKGYKIKGFTKEFSSLT 70
+ P G F+VRES T G + LS+ L + HY I + + G+ I T +FSSL
Sbjct: 24 ENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRT-QFSSLQ 82
Query: 71 SLITHHS 77
L+ ++S
Sbjct: 83 QLVAYYS 89
>pdb|1IS0|A Chain A, Crystal Structure Of A Complex Of The Src Sh2 Domain
With Conformationally Constrained Peptide Inhibitor
pdb|1IS0|B Chain B, Crystal Structure Of A Complex Of The Src Sh2 Domain
With Conformationally Constrained Peptide Inhibitor
pdb|2JYQ|A Chain A, Nmr Structure Of The Apo V-Src Sh2 Domain
Length = 106
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 12 QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILR-TAKGYKIKGFTKEFSSLT 70
+ P G F+VRES T G + LS+ L + HY I + + G+ I T +FSSL
Sbjct: 23 ENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRT-QFSSLQ 81
Query: 71 SLITHHS 77
L+ ++S
Sbjct: 82 QLVAYYS 88
>pdb|1SHA|A Chain A, Crystal Structure Of The Phosphotyrosine Recognition
Domain Sh2 Of V-Src Complexed With
Tyrosine-Phosphorylated Peptides
pdb|1SHB|A Chain A, Crystal Structure Of The Phosphotyrosine Recognition
Domain Sh2 Of V-Src Complexed With
Tyrosine-Phosphorylated Peptides
pdb|1SPR|A Chain A, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPR|B Chain B, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPR|C Chain C, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPR|D Chain D, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPS|A Chain A, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPS|B Chain B, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPS|C Chain C, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
Length = 104
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 12 QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILR-TAKGYKIKGFTKEFSSLT 70
+ P G F+VRES T G + LS+ L + HY I + + G+ I T +FSSL
Sbjct: 23 ENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRT-QFSSLQ 81
Query: 71 SLITHHS 77
L+ ++S
Sbjct: 82 QLVAYYS 88
>pdb|1P13|A Chain A, Crystal Structure Of The Src Sh2 Domain Complexed With
Peptide (Sdpyanfk)
pdb|1P13|B Chain B, Crystal Structure Of The Src Sh2 Domain Complexed With
Peptide (Sdpyanfk)
Length = 102
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 12 QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILR-TAKGYKIKGFTKEFSSLT 70
+ P G F+VRES T G + LS+ L + HY I + + G+ I T +FSSL
Sbjct: 22 ENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRT-QFSSLQ 80
Query: 71 SLITHHS 77
L+ ++S
Sbjct: 81 QLVAYYS 87
>pdb|1NZL|A Chain A, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyepyipi
pdb|1NZL|B Chain B, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyepyipi
pdb|1NZV|A Chain A, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyipyvpa
pdb|1NZV|B Chain B, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyipyvpa
Length = 103
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 12 QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILR-TAKGYKIKGFTKEFSSLT 70
+ P G F+VRES T G + LS+ L + HY I + + G+ I T +FSSL
Sbjct: 22 ENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRT-QFSSLQ 80
Query: 71 SLITHHS 77
L+ ++S
Sbjct: 81 QLVAYYS 87
>pdb|1F1W|A Chain A, Src Sh2 Thref1trp Mutant Complexed With The
Phosphopeptide S(Ptr)vnvqn
pdb|1F2F|A Chain A, Src Sh2 Thref1trp Mutant
Length = 104
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 12 QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILR-TAKGYKIKGFTKEFSSLT 70
+ P G F+VRES T G + LS+ L + HY I + + G+ I T +FSSL
Sbjct: 23 ENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYIWSRT-QFSSLQ 81
Query: 71 SLITHHS 77
L+ ++S
Sbjct: 82 QLVAYYS 88
>pdb|3T04|A Chain A, Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN COMPLEX
pdb|3UYO|A Chain A, Crystal Structure Of Monobody Sh13ABL1 SH2 DOMAIN COMPLEX
Length = 123
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 9 VLSQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSS 68
+LS G+F+VRES + PG ++SLR + HY I + G F++
Sbjct: 31 LLSSGINGSFLVRESESSPGQRSISLRYEGR-----VYHYRINTASDGKLYVSSESRFNT 85
Query: 69 LTSLITHHSVMPELLPCTL 87
L L+ HHS + + L TL
Sbjct: 86 LAELVHHHSTVADGLITTL 104
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 9 VLSQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSS 68
+LS G+F+VRES + PG ++SLR + HY I + G F++
Sbjct: 120 LLSSGINGSFLVRESESSPGQRSISLRYEGRVY-----HYRINTASDGKLYVSSESRFNT 174
Query: 69 LTSLITHHSVMPELLPCTL 87
L L+ HHS + + L TL
Sbjct: 175 LAELVHHHSTVADGLITTL 193
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 9 VLSQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSS 68
+LS G+F+VRES + PG ++SLR + HY I + G F++
Sbjct: 117 LLSSGINGSFLVRESESSPGQRSISLRYEGRVY-----HYRINTASDGKLYVSSESRFNT 171
Query: 69 LTSLITHHSVMPELLPCTL 87
L L+ HHS + + L TL
Sbjct: 172 LAELVHHHSTVADGLITTL 190
>pdb|1SHD|A Chain A, Peptide Inhibitors Of Src Sh3-Sh2-Phosphoprotein
Interactions
pdb|1HCT|B Chain B, Nmr Structure Of The Human Src Sh2 Domain Complex
pdb|1HCS|B Chain B, Nmr Structure Of The Human Src Sh2 Domain Complex
pdb|1A07|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Malonyl
Tyr-Glu-(N,N- Dipentyl Amine)
pdb|1A07|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Malonyl
Tyr-Glu-(N,N- Dipentyl Amine)
pdb|1A08|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Difluoro
Phosphotyr- Glu-(N,N-Dipentyl Amine)
pdb|1A08|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Difluoro
Phosphotyr- Glu-(N,N-Dipentyl Amine)
pdb|1A09|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Formyl
Phosphotyr-Glu- (N,N-Dipentyl Amine)
pdb|1A09|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Formyl
Phosphotyr-Glu- (N,N-Dipentyl Amine)
pdb|1A1B|A Chain A, C-Src (Sh2 Domain) Complexed With
Ace-Phosphotyr-Glu-(N,N- Dipentyl Amine)
pdb|1A1B|B Chain B, C-Src (Sh2 Domain) Complexed With
Ace-Phosphotyr-Glu-(N,N- Dipentyl Amine)
pdb|1A1C|A Chain A, C-Src (Sh2 Domain) Complexed With
Ace-Phosphotyr-Glu-(N-Me(- (Ch2)3-Cyclopentyl))
pdb|1A1C|B Chain B, C-Src (Sh2 Domain) Complexed With
Ace-Phosphotyr-Glu-(N-Me(- (Ch2)3-Cyclopentyl))
pdb|1A1E|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(3-
Butylpiperidine)
pdb|1A1E|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(3-
Butylpiperidine)
Length = 107
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 11 SQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILR-TAKGYKIKGFTKEFSSL 69
++ P G F+VRES T G + LS+ L + HY I + + G+ I T +F+SL
Sbjct: 26 AENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRT-QFNSL 84
Query: 70 TSLITHHS 77
L+ ++S
Sbjct: 85 QQLVAYYS 92
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 9 VLSQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSS 68
+LS G+F+VRES + PG ++SLR + HY I + G F++
Sbjct: 159 LLSSGINGSFLVRESESSPGQRSISLRYEGRVY-----HYRINTASDGKLYVSSESRFNT 213
Query: 69 LTSLITHHSVMPELLPCTL 87
L L+ HHS + + L TL
Sbjct: 214 LAELVHHHSTVADGLITTL 232
>pdb|1O41|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78300.
pdb|1O42|A Chain A, Crystal Structure Of Sh2 In Complex With Ru81843.
pdb|1O43|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82129.
pdb|1O44|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85052
pdb|1O45|A Chain A, Crystal Structure Of Sh2 In Complex With Ru84687.
pdb|1O46|A Chain A, Crystal Structure Of Sh2 In Complex With Ru90395.
pdb|1O47|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82209.
pdb|1O48|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85053.
pdb|1O49|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85493.
pdb|1O4A|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82197.
pdb|1O4B|A Chain A, Crystal Structure Of Sh2 In Complex With Ru83876.
pdb|1O4D|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78262.
pdb|1O4E|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78299.
pdb|1O4H|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79072.
pdb|1O4I|A Chain A, Crystal Structure Of Sh2 In Complex With Pas219.
pdb|1O4J|A Chain A, Crystal Structure Of Sh2 In Complex With Iso24.
pdb|1O4K|A Chain A, Crystal Structure Of Sh2 In Complex With Pasbn.
pdb|1O4L|A Chain A, Crystal Structure Of Sh2 In Complex With Fragment2.
pdb|1O4M|A Chain A, Crystal Structure Of Sh2 In Complex With Malonicacid.
pdb|1O4N|A Chain A, Crystal Structure Of Sh2 In Complex With Oxalic Acid.
pdb|1O4O|A Chain A, Crystal Structure Of Sh2 In Complex With
Phenylphosphate.
pdb|1O4P|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78791.
pdb|1O4Q|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79256.
pdb|1O4R|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78783
Length = 108
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 11 SQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILR-TAKGYKIKGFTKEFSSL 69
++ P G F+VRES T G + LS+ L + HY I + + G+ I T +F+SL
Sbjct: 24 AENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRT-QFNSL 82
Query: 70 TSLITHHSVMPELL 83
L+ ++S + L
Sbjct: 83 QQLVAYYSKHADGL 96
>pdb|1O4C|A Chain A, Crystal Structure Of Sh2 In Complex With Phosphate.
pdb|1O4F|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79073.
pdb|1O4G|A Chain A, Crystal Structure Of Sh2 In Complex With Dpi59
Length = 108
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 11 SQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILR-TAKGYKIKGFTKEFSSL 69
++ P G F+VRES T G + LS+ L + HY I + + G+ I T +F+SL
Sbjct: 24 AENPRGTFLVRESETTKGAYXLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRT-QFNSL 82
Query: 70 TSLITHHSVMPELL 83
L+ ++S + L
Sbjct: 83 QQLVAYYSKHADGL 96
>pdb|1BFI|A Chain A, Solution Structure Of The C-Terminal Sh2 Domain Of The
P85alpha Regulatory Subunit Of Phosphoinositide
3-Kinase, Nmr, 30 Structures
pdb|1BFJ|A Chain A, Solution Structure Of The C-Terminal Sh2 Domain Of The
P85alpha Regulatory Subunit Of Phosphoinositide
3-Kinase, Nmr, Minimized Average Structure
Length = 112
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G F+VRES+ K GC+A S+ V E + H +I +TA GY +SSL L+ H
Sbjct: 32 GTFLVRESS-KQGCYACSVVVDGE-----VKHCVINKTATGYGFAEPYNLYSSLKELVLH 85
Query: 76 H 76
+
Sbjct: 86 Y 86
>pdb|1QAD|A Chain A, Crystal Structure Of The C-Terminal Sh2 Domain Of The
P85 Alpha Regulatory Subunit Of Phosphoinositide
3-Kinase: An Sh2 Domain Mimicking Its Own Substrate
Length = 111
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G F+VRES+ K GC+A S+ V E + H +I +TA GY +SSL L+ H
Sbjct: 31 GTFLVRESS-KQGCYACSVVVDGE-----VKHCVINKTATGYGFAEPYNLYSSLKELVLH 84
Query: 76 H 76
+
Sbjct: 85 Y 85
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 12 QEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILR-TAKGYKIKGFTKEFSSLT 70
+ P G F+VRES T G + LS+ L + HY I + + G+ I T +FSSL
Sbjct: 86 ENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRT-QFSSLQ 144
Query: 71 SLITHHS 77
L+ ++S
Sbjct: 145 QLVAYYS 151
>pdb|1H9O|A Chain A, Phosphatidylinositol 3-Kinase, P85-Alpha Subunit:
C-Terminal Sh2 Domain Complexed With A Tyr751
Phosphopeptide From The Pdgf Receptor, Crystal
Structure At 1.79 A
pdb|1PIC|A Chain A, Phosphatidylinositol 3-Kinase, P85-Alpha Subunit: C-
Terminal Sh2 Domain Complexed With A Tyr751
Phosphopeptide From The Pdgf Receptor, Nmr, Minimized
Mean Structure
Length = 112
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G F+VRES+ K GC+A S+ V E + H +I +TA GY +SSL L+ H
Sbjct: 32 GTFLVRESS-KQGCYACSVVVDGE-----VKHCVINKTATGYGFAEPYNLYSSLKELVLH 85
Query: 76 H 76
+
Sbjct: 86 Y 86
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 11 SQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILR-TAKGYKIKGFTKEFSSL 69
++ P G F+VRES T G + LS+ L + HY I + + G+ I T +F+SL
Sbjct: 84 AENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRT-QFNSL 142
Query: 70 TSLITHHS 77
L+ ++S
Sbjct: 143 QQLVAYYS 150
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 11 SQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILR-TAKGYKIKGFTKEFSSL 69
++ P G F+VRES T G + LS+ L + HY I + + G+ I T +F+SL
Sbjct: 84 AENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRT-QFNSL 142
Query: 70 TSLITHHS 77
L+ ++S
Sbjct: 143 QQLVAYYS 150
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 11 SQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILR-TAKGYKIKGFTKEFSSL 69
++ P G F+VRES T G + LS+ L + HY I + + G+ I T +F+SL
Sbjct: 84 AENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRT-QFNSL 142
Query: 70 TSLITHHS 77
L+ ++S
Sbjct: 143 QQLVAYYS 150
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 11 SQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILR-TAKGYKIKGFTKEFSSL 69
++ P G F+VRES T G + LS+ L + HY I + + G+ I T +F+SL
Sbjct: 167 AENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRT-QFNSL 225
Query: 70 TSLITHHS 77
L+ ++S
Sbjct: 226 QQLVAYYS 233
>pdb|2Y3A|B Chain B, Crystal Structure Of P110beta In Complex With Icsh2 Of
P85beta And The Drug Gdc-0941
Length = 302
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 8 EVLSQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFS 67
E+LS + G F++RES+ + GC+A S+ V + H +I RTA G+ +
Sbjct: 208 EMLSGKRDGTFLIRESSQR-GCYACSVVVDGD-----TKHCVIYRTATGFGFAEPYNLYG 261
Query: 68 SLTSLITHH 76
SL L+ H+
Sbjct: 262 SLKELVLHY 270
>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2
pdb|2SHP|B Chain B, Tyrosine Phosphatase Shp-2
Length = 525
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLG-----IAHYLILRTAKGYKIKGFTKEFSSLT 70
G+F+VRES + PG F LS+R + + H +I Y + G + F SLT
Sbjct: 133 GSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELKYDVGG-GERFDSLT 191
Query: 71 SLITHHSVMP--ELLPCTLSLHR 91
L+ H+ P E L L L +
Sbjct: 192 DLVEHYKKNPMVETLGTVLQLKQ 214
Score = 30.0 bits (66), Expect = 0.37, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLIT- 74
G+F+ R S + PG LS+R + + H I T Y + G K F++L L+
Sbjct: 27 GSFLARPSKSNPGDLTLSVR-----RNGAVTHIKIQNTGDYYDLYGGEK-FATLAELVQY 80
Query: 75 ---HHSVMPE 81
HH + E
Sbjct: 81 YMEHHGQLKE 90
>pdb|3PQZ|A Chain A, Grb7 Sh2 With Peptide
pdb|3PQZ|B Chain B, Grb7 Sh2 With Peptide
pdb|3PQZ|C Chain C, Grb7 Sh2 With Peptide
pdb|3PQZ|D Chain D, Grb7 Sh2 With Peptide
Length = 117
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKI-----KGFTKEFSSLT 70
G F+VRES P F LSL H + HYLIL + + ++ G T+ F+ L
Sbjct: 38 GLFLVRESQRNPQGFVLSL-----CHLQKVKHYLILPSEEEGRLYFSMDDGQTR-FTDLL 91
Query: 71 SLITHHSVMPELLPCTL 87
L+ H + +LPC L
Sbjct: 92 QLVEFHQLNRGILPCLL 108
>pdb|1MW4|A Chain A, Solution Structure Of The Human Grb7-Sh2 Domain In Complex
With A 10 Amino Acid Peptide Py1139
pdb|2QMS|A Chain A, Crystal Structure Of A Signaling Molecule
pdb|2QMS|B Chain B, Crystal Structure Of A Signaling Molecule
pdb|2QMS|C Chain C, Crystal Structure Of A Signaling Molecule
pdb|2QMS|D Chain D, Crystal Structure Of A Signaling Molecule
pdb|2L4K|A Chain A, Water Refined Solution Structure Of The Human Grb7-Sh2
Domain In Complex With The 10 Amino Acid Peptide Py1139
Length = 120
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKI-----KGFTKEFSSLT 70
G F+VRES P F LSL H + HYLIL + + ++ G T+ F+ L
Sbjct: 41 GLFLVRESQRNPQGFVLSL-----CHLQKVKHYLILPSEEEGRLYFSMDDGQTR-FTDLL 94
Query: 71 SLITHHSVMPELLPCTL 87
L+ H + +LPC L
Sbjct: 95 QLVEFHQLNRGILPCLL 111
>pdb|3M7F|A Chain A, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 108
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKG----YKIKGFTKEFSSLTS 71
G F++R+S + P F L+L HH I ++ IL + + +FS L
Sbjct: 29 GLFLLRDSQSNPKAFVLTL-----CHHQKIKNFQILPCEDDGQTFFSLDDGNTKFSDLIQ 83
Query: 72 LITHHSVMPELLPCTLSLH 90
L+ + + +LPC L H
Sbjct: 84 LVDFYQLNKGVLPCKLKHH 102
>pdb|1NRV|A Chain A, Crystal Structure Of The Sh2 Domain Of Grb10
pdb|1NRV|B Chain B, Crystal Structure Of The Sh2 Domain Of Grb10
Length = 105
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKG----YKIKGFTKEFSSLTS 71
G F++R+S + P F L+L HH I ++ IL + + +FS L
Sbjct: 29 GLFLLRDSQSNPKAFVLTL-----CHHQKIKNFQILPCEDDGQTFFSLDDGNTKFSDLIQ 83
Query: 72 LITHHSVMPELLPCTLSLH 90
L+ + + +LPC L H
Sbjct: 84 LVDFYQLNKGVLPCKLKHH 102
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 15 VGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGF----TKEFSSLT 70
+G+FM+R+S T G ++LS+R + HY I G GF FS+L
Sbjct: 94 LGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNG----GFYISPRSTFSTLQ 149
Query: 71 SLITHHSVMPELLPCTLSL 89
L+ H+ + L LS+
Sbjct: 150 ELVDHYKKGNDGLCQKLSV 168
>pdb|2DLY|A Chain A, Solution Structure Of The Sh2 Domain Of Murine Fyn-Related
Kinase
Length = 121
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 11 SQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLT 70
S+ GAF++RES ++ G F+LS+ + HY I R +G K FS+L
Sbjct: 35 SENQTGAFLIRESESQKGDFSLSV-----LDEGVVKHYRIRRLDEGGFFLTRRKVFSTLN 89
Query: 71 SLITHHSVMPELL------PC 85
+ +++ + L PC
Sbjct: 90 EFVNYYTTTSDGLCVKLEKPC 110
>pdb|3HCK|A Chain A, Nmr Ensemble Of The Uncomplexed Human Hck Sh2 Domain, 20
Structures
Length = 107
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 15 VGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGF----TKEFSSLT 70
+G+FM+R+S T G ++LS+R + HY I G GF FS+L
Sbjct: 27 LGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNG----GFYISPRSTFSTLQ 82
Query: 71 SLITHHSVMPELLPCTLSL 89
L+ H+ + L LS+
Sbjct: 83 ELVDHYKKGNDGLCQKLSV 101
>pdb|2KK6|A Chain A, Solution Structure Of Sh2 Domain Of Proto-Oncogene
Tyrosine- Protein Kinase Fer From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr3461d
Length = 116
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G F+VRES KPG + LS+ + H++I Y+ +G FS++ LI H
Sbjct: 37 GDFLVRESHGKPGEYVLSVYSDGQRR-----HFIIQYVDNMYRFEGTG--FSNIPQLIDH 89
Query: 76 HSVMPELLPCTLSLHRYNP 94
H +++ + NP
Sbjct: 90 HYTTKQVITKKSGVVLLNP 108
>pdb|1AYA|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYA|B Chain B, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYB|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYC|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYD|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
Length = 101
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 9 VLSQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSS 68
+L++ G+F+ R S + PG F LS+R + + H I T Y + G K F++
Sbjct: 18 LLTRGVDGSFLARPSKSNPGDFTLSVR-----RNGAVTHIKIQNTGDYYDLYGGEK-FAT 71
Query: 69 LTSLIT----HHSVMPE 81
L L+ HH + E
Sbjct: 72 LAELVQYYMEHHGQLKE 88
>pdb|3GQI|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase
In Complex With Substrates
Length = 226
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 14 PVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLI 73
P G+F+VRES T G + LS + H I T K + F SL LI
Sbjct: 35 PDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTDNLV--FDSLYDLI 92
Query: 74 THHSVMP 80
TH+ +P
Sbjct: 93 THYQQVP 99
>pdb|3TL0|A Chain A, Structure Of Shp2 N-Sh2 Domain In Complex With
Rlnpyaqlwhr Peptide
pdb|3TKZ|A Chain A, Structure Of The Shp-2 N-Sh2 Domain In A 1:2 Complex
With Rvipyfvplnr Peptide
Length = 109
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 9 VLSQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSS 68
+L++ G+F+ R S + PG F LS+R + + H I T Y + G K F++
Sbjct: 23 LLTRGVDGSFLARPSKSNPGDFTLSVR-----RNGAVTHIKIQNTGDYYDLYGGEK-FAT 76
Query: 69 LTSLIT----HHSVMPE 81
L L+ HH + E
Sbjct: 77 LAELVQYYMEHHGQLKE 93
>pdb|4EY0|A Chain A, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|B Chain B, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|C Chain C, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|D Chain D, Structure Of Tandem Sh2 Domains From Plcgamma1
Length = 246
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 14 PVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLI 73
P G+F+VRES T G + LS + H I T K + F SL LI
Sbjct: 35 PDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTDNLV--FDSLYDLI 92
Query: 74 THHSVMP 80
TH+ +P
Sbjct: 93 THYQQVP 99
>pdb|4FBN|A Chain A, Insights Into Structural Integration Of The Plcgamma
Regulatory Region And Mechanism Of Autoinhibition And
Activation Based On Key Roles Of Sh2 Domains
Length = 246
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 14 PVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLI 73
P G+F+VRES T G + LS + H I T K + F SL LI
Sbjct: 35 PDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTDNLV--FDSLYDLI 92
Query: 74 THHSVMP 80
TH+ +P
Sbjct: 93 THYQQVP 99
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 33.1 bits (74), Expect = 0.036, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 15 VGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLIT 74
+G+FM+R+S T G ++LS+R + HY I G FS+L L+
Sbjct: 93 LGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQELVD 152
Query: 75 HH 76
H+
Sbjct: 153 HY 154
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 33.1 bits (74), Expect = 0.036, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 15 VGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLIT 74
+G+FM+R+S T G ++LS+R + HY I G FS+L L+
Sbjct: 87 LGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRSTFSTLQELVD 146
Query: 75 HH 76
H+
Sbjct: 147 HY 148
>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1
Length = 532
Score = 32.3 bits (72), Expect = 0.074, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 18 FMVRESTTKPGCFALSLRV--PKE--FHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLI 73
F+VRES ++PG F LS+ PK L + H ++ Y + G + F SLT L+
Sbjct: 133 FLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGL-ETFDSLTDLV 191
Query: 74 TH 75
H
Sbjct: 192 EH 193
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G+F+ R S G F+LS+RV + + H I + Y + G K F++LT L+ +
Sbjct: 25 GSFLARPSRKNQGDFSLSVRVGDQ-----VTHIRIQNSGDFYDLYGGEK-FATLTELVEY 78
Query: 76 HS 77
++
Sbjct: 79 YT 80
>pdb|2AUG|A Chain A, Crystal Structure Of The Grb14 Sh2 Domain
pdb|2AUG|B Chain B, Crystal Structure Of The Grb14 Sh2 Domain
Length = 126
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKI-----KGFTKEFSSLT 70
G F+VR+S + P F LS+ H I H+ I+ ++ G T+ F+ L
Sbjct: 50 GVFLVRDSQSNPKTFVLSMS-----HGQKIKHFQIIPVEDDGEMFHTLDDGHTR-FTDLI 103
Query: 71 SLITHHSVMPELLPCTL 87
L+ + + +LPC L
Sbjct: 104 QLVEFYQLNKGVLPCKL 120
>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein
Tyrosine Phosphatase Shp-1
Length = 595
Score = 32.3 bits (72), Expect = 0.079, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 18 FMVRESTTKPGCFALSLRV--PKE--FHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLI 73
F+VRES ++PG F LS+ PK L + H ++ Y + G + F SLT L+
Sbjct: 133 FLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGL-ETFDSLTDLV 191
Query: 74 TH 75
H
Sbjct: 192 EH 193
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G+F+ R S G F+LS+RV + + H I + Y + G K F++LT L+ +
Sbjct: 25 GSFLARPSRKNQGDFSLSVRVGDQ-----VTHIRIQNSGDFYDLYGGEK-FATLTELVEY 78
Query: 76 HS 77
++
Sbjct: 79 YT 80
>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|B Chain B, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|C Chain C, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|D Chain D, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|E Chain E, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|F Chain F, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
Length = 167
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G+F++RES + G F+LS+R + + HY I G F L L+ H
Sbjct: 90 GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRH 149
Query: 76 HSVMPELLPCTLS 88
++ + L LS
Sbjct: 150 YTNASDGLCTRLS 162
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 16 GAFMVRESTTKPGCFALSLR 35
GA+++RES +PGC+ L+LR
Sbjct: 76 GAYILRESQRQPGCYTLALR 95
>pdb|1LKL|A Chain A, Human P56-Lck Tyrosine Kinase Sh2 Domain In Complex With
The Phosphotyrosyl Peptide Ac-Ptyr-Glu-Glu-Gly (Pyeeg
Peptide)
Length = 104
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G+F++RES + G F+LS+R + + HY I G F L L+ H
Sbjct: 27 GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRH 86
Query: 76 HSVMPELLPCTLS 88
++ + L LS
Sbjct: 87 YTNASDGLCTRLS 99
>pdb|1LCJ|A Chain A, Sh2 (Src Homology-2) Domain Of Human P56-Lck Tyrosine
Kinase Complexed With The 11 Residue Phosphotyrosyl
Peptide Epqpyeeipiyl
Length = 109
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G+F++RES + G F+LS+R + + HY I G F L L+ H
Sbjct: 32 GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRH 91
Query: 76 HSVMPELLPCTLS 88
++ + L LS
Sbjct: 92 YTNASDGLCTRLS 104
>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase
Complexed With The 10 Residue Synthetic Phosphotyrosyl
Peptide Tegqpyqpqpa
Length = 175
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G+F++RES + G F+LS+R + + HY I G F L L+ H
Sbjct: 98 GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRH 157
Query: 76 HSVMPELLPCTLS 88
++ + L LS
Sbjct: 158 YTNASDGLCTRLS 170
>pdb|1X6C|A Chain A, Solution Structures Of The Sh2 Domain Of Human Protein-
Tyrosine Phosphatase Shp-1
pdb|2YU7|A Chain A, Solution Structure Of The Shp-1 C-Terminal Sh2 Domain
Complexed With A Tyrosine-Phosphorylated Peptide From
Nkg2a
pdb|2RMX|A Chain A, Solution Structure Of The Shp-1 C-Terminal Sh2 Domain
Complexed With A Tyrosine-Phosphorylated Peptide From
Nkg2a
Length = 118
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 3 QEITLEVLSQEPVGAFMVRESTTKPGCFALSL--RVPKE--FHHLGIAHYLILRTAKGYK 58
Q TL EP F+VRES ++PG F LS+ PK L + H ++ Y
Sbjct: 17 QAETLLQAKGEPW-TFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYT 75
Query: 59 IKGFTKEFSSLTSLITH 75
+ G + F SLT L+ H
Sbjct: 76 VGGL-ETFDSLTDLVEH 91
>pdb|1LKK|A Chain A, Human P56-Lck Tyrosine Kinase Sh2 Domain In Complex With
The Phosphotyrosyl Peptide Ac-Ptyr-Glu-Glu-Ile (Pyeei
Peptide)
Length = 105
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G+F++RES + G F+LS+R + + HY I G F L L+ H
Sbjct: 28 GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRH 87
Query: 76 HSVMPELLPCTLS 88
++ + L LS
Sbjct: 88 YTNASDGLCTRLS 100
>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A
Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From
Homo Sapiens At 2.36 A Resolution
Length = 175
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G+F++RES + G F+LS+R + + HY I G F L L+ H
Sbjct: 98 GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRH 157
Query: 76 HSVMPELLPCT 86
++ + L CT
Sbjct: 158 YTNASDGL-CT 167
>pdb|1BHF|A Chain A, P56lck Sh2 Domain Inhibitor Complex
pdb|1BHH|A Chain A, Free P56lck Sh2 Domain
Length = 108
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G+F++RES + G F+LS+R + + HY I G F L L+ H
Sbjct: 31 GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRH 90
Query: 76 HSVMPELLPCTLS 88
++ + L LS
Sbjct: 91 YTNASDGLCTRLS 103
>pdb|1BHH|B Chain B, Free P56lck Sh2 Domain
Length = 103
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G+F++RES + G F+LS+R + + HY I G F L L+ H
Sbjct: 26 GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRH 85
Query: 76 HSVMPELLPCTLS 88
++ + L LS
Sbjct: 86 YTNASDGLCTRLS 98
>pdb|2DX0|A Chain A, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse
Phospholipase C-Gamma 2
pdb|2DX0|B Chain B, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse
Phospholipase C-Gamma 2
Length = 138
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 1 MIQEITLEVLSQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIK 60
++QE E +++ G F+VRES T P + LS H I + K Y
Sbjct: 38 LLQEYCAETGAKD--GTFLVRESETFPNDYTLSFWRSGRVQHCRIRSTMENGVMKYYLTD 95
Query: 61 GFTKEFSSLTSLITHH 76
T F+S+ +LI H+
Sbjct: 96 NLT--FNSIYALIQHY 109
>pdb|1CWD|L Chain L, Human P56lck Tyrosine Kinase Complexed With
Phosphopeptide
pdb|1CWE|A Chain A, Human P56lck Tyrosine Kinase Complexed With
Phosphopeptide
pdb|1CWE|C Chain C, Human P56lck Tyrosine Kinase Complexed With
Phosphopeptide
Length = 98
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G+F++RES + G F+LS+R + + HY I G F L L+ H
Sbjct: 25 GSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRH 84
Query: 76 HSVMPELLPCTLS 88
++ + L LS
Sbjct: 85 YTNASDGLCTRLS 97
>pdb|1FBZ|A Chain A, Structure-Based Design Of A Novel, Osteoclast-Selective,
Nonpeptide Src Sh2 Inhibitor With In Vivo
Anti-Resorptive Activity
pdb|1FBZ|B Chain B, Structure-Based Design Of A Novel, Osteoclast-Selective,
Nonpeptide Src Sh2 Inhibitor With In Vivo
Anti-Resorptive Activity
Length = 104
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G+F++RES + G F LS+R + + HY I G F L L+ H
Sbjct: 27 GSFLIRESESTAGSFCLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRH 86
Query: 76 HSVMPELLPCTLS 88
++ + L LS
Sbjct: 87 YTNASDGLCTRLS 99
>pdb|1TCE|A Chain A, Solution Nmr Structure Of The Shc Sh2 Domain Complexed
With A Tyrosine-Phosphorylated Peptide From The T-Cell
Receptor, Minimized Average Structure
Length = 107
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G F+VRESTT PG + L+ G +L+L +G ++ F S++ LI++
Sbjct: 27 GDFLVRESTTTPGQYVLT------GSQSGQPKHLLLVDPEGV-VRTKDHRFESVSHLISY 79
Query: 76 H 76
H
Sbjct: 80 H 80
>pdb|1IJR|A Chain A, Crystal Structure Of Lck Sh2 Complexed With Nonpeptide
Phosphotyrosine Mimetic
Length = 104
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G+F++RES + G F LS+R + + HY I G F L L+ H
Sbjct: 27 GSFLIRESESTAGSFCLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRH 86
Query: 76 HSVMPELLPCTLS 88
++ + L LS
Sbjct: 87 YTNASDGLCTRLS 99
>pdb|2LCT|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With
A Syk-Derived Doubly Phosphorylated Peptide
Length = 107
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 9 VLSQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKG-YKIKGFTKEFS 67
+L+ G F+VR+ FA+S++ E H+ I TA+G Y+I K F
Sbjct: 24 ILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIM------TAEGLYRITE-KKAFR 76
Query: 68 SLTSLITHHSVMPELLPCTLSLH 90
LT L+ + L C SL
Sbjct: 77 GLTELVEFYQ-QNSLKDCFKSLD 98
>pdb|1BLJ|A Chain A, Nmr Ensemble Of Blk Sh2 Domain, 20 Structures
pdb|1BLK|A Chain A, Nmr Ensemble Of Blk Sh2 Domain Using Chemical Shift
Refinement, 20 Structures
Length = 114
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 15 VGAFMVRESTTKPGCFALSLRVPKEFHHLG--IAHYLILRTAKGYKIKGFTKEFSSLTSL 72
G+F++RES + G F+LS+ K+ G + HY I G F +L +L
Sbjct: 35 AGSFLIRESESNKGAFSLSV---KDITTQGEVVKHYKIRSLDNGGYYISPRITFPTLQAL 91
Query: 73 ITHHSVMPELLPCTLSL 89
+ H+S + L L+L
Sbjct: 92 VQHYSKKGDGLCQKLTL 108
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLI 50
G F+VR+S+T PG + LS+ + ++HY+I
Sbjct: 33 GVFLVRDSSTSPGDYVLSVS-----ENSRVSHYII 62
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLI 50
G F+VR+S+T PG + LS+ + ++HY+I
Sbjct: 35 GVFLVRDSSTSPGDYVLSVS-----ENSRVSHYII 64
>pdb|1MIL|A Chain A, Transforming Protein
Length = 104
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G F+VRESTT PG + L+ G +L+L +G ++ F S++ LI++
Sbjct: 27 GDFLVRESTTTPGQYVLT------GLQSGQPKHLLLVDPEGV-VRTKDHRFESVSHLISY 79
Query: 76 H 76
H
Sbjct: 80 H 80
>pdb|2EO3|A Chain A, Solution Structure Of The Sh2 Domain From Human Crk-Like
Protein
Length = 111
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G F+VR+S+T PG + LS+ + ++HY I+ + + K +EF L +L+
Sbjct: 41 GMFLVRDSSTCPGDYVLSVS-----ENSRVSHY-IINSLPNRRFKIGDQEFDHLPALLEF 94
Query: 76 HSV 78
+ +
Sbjct: 95 YKI 97
>pdb|1JU5|A Chain A, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived
Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
Length = 109
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLI 50
G F+VR+S+T PG + LS+ + ++HY+I
Sbjct: 22 GVFLVRDSSTSPGDYVLSVS-----ENSRVSHYII 51
>pdb|2EYV|A Chain A, Sh2 Domain Of Ct10-Regulated Kinase
Length = 124
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLI 50
G F+VR+S+T PG + LS+ ++HY+I
Sbjct: 32 GVFLVRDSSTSPGDYVLSVSENSR-----VSHYII 61
>pdb|1A81|A Chain A, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|C Chain C, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|E Chain E, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|G Chain G, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|I Chain I, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|K Chain K, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
Length = 254
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKG-YKIKGFTKEFSSLTSLIT 74
G +++R+S G FALS+ ++ H HY I R G Y I G + +S L
Sbjct: 29 GLYLLRQSRNYLGGFALSVAHGRKAH-----HYTIERELNGTYAIAG-GRTHASPADLCH 82
Query: 75 HHSVMPELLPCTL 87
+HS + L C L
Sbjct: 83 YHSQESDGLVCLL 95
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 29.3 bits (64), Expect = 0.60, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G F+VREST PG + L + + + HY I+ A I F +L L+ H
Sbjct: 102 GLFLVRESTNYPGDYTLCVSCEGK-----VEHYRIMYHASKLSIDEEVY-FENLMQLVEH 155
Query: 76 HS 77
++
Sbjct: 156 YT 157
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 29.3 bits (64), Expect = 0.62, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G F+VR+S+T PG + LS+ + ++HY I+ + + K +EF L +L+
Sbjct: 34 GMFLVRDSSTCPGDYVLSVS-----ENSRVSHY-IINSLPNRRFKIGDQEFDHLPALLEF 87
Query: 76 HSV 78
+ +
Sbjct: 88 YKI 90
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 29.3 bits (64), Expect = 0.62, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G F+VR+S+T PG + LS+ + ++HY I+ + + K +EF L +L+
Sbjct: 34 GMFLVRDSSTCPGDYVLSVS-----ENSRVSHY-IINSLPNRRFKIGDQEFDHLPALLEF 87
Query: 76 HSV 78
+ +
Sbjct: 88 YKI 90
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 28.9 bits (63), Expect = 0.73, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLI 50
G F+VR+S+T PG + LS+ + ++HY+I
Sbjct: 33 GVFLVRDSSTSPGDYVLSVS-----ENSRVSHYII 62
>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 636
Score = 28.9 bits (63), Expect = 0.78, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKG-YKIKGFTKEFSSLTSLIT 74
G +++R+S G FALS+ ++ H HY I R G Y I G + +S L
Sbjct: 38 GLYLLRQSRNYLGGFALSVAHGRKAH-----HYTIERELNGTYAIAG-GRTHASPADLCH 91
Query: 75 HHSVMPELLPCTL 87
+HS + L C L
Sbjct: 92 YHSQESDGLVCLL 104
>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 635
Score = 28.9 bits (63), Expect = 0.79, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKG-YKIKGFTKEFSSLTSLIT 74
G +++R+S G FALS+ ++ H HY I R G Y I G + +S L
Sbjct: 37 GLYLLRQSRNYLGGFALSVAHGRKAH-----HYTIERELNGTYAIAG-GRTHASPADLCH 90
Query: 75 HHSVMPELLPCTL 87
+HS + L C L
Sbjct: 91 YHSQESDGLVCLL 103
>pdb|3EAC|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-
Terminal Src Kinase), Oxidized Form
Length = 106
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G F+VREST PG + L + + + HY I+ A I F +L L+ H
Sbjct: 30 GLFLVRESTNYPGDYTLCVSCDGK-----VEHYRIMYHASKLSIDEEVY-FENLMQLVEH 83
Query: 76 HSVMPELLPCT 86
++ + L CT
Sbjct: 84 YTSDADGL-CT 93
>pdb|2HMH|A Chain A, Crystal Structure Of Socs3 In Complex With Gp130(Ptyr757)
Phosphopeptide
Length = 152
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 9 VLSQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTK---- 64
+LS EP G F++R+S+ + F LS++ G + I + ++ +
Sbjct: 49 LLSAEPAGTFLIRDSSDQRHFFTLSVKT-----QSGTKNLRIQXEGGSFSLQSDPRSTQP 103
Query: 65 --EFSSLTSLITHHSVMPELLPCTLSLHRY 92
F + L+ HH + P+ LP + Y
Sbjct: 104 VPRFDXVLKLV-HHYMPPQALPGSTPKRAY 132
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 16 GAFMVRESTTKPGCFALSLR 35
G++++RES +PG + L+LR
Sbjct: 72 GSYLIRESQRQPGTYTLALR 91
>pdb|2CRH|A Chain A, Solution Structure Of The Sh2 Domain Of Human Proto-
Oncogene Protein Vav1
pdb|2ROR|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With A
Tyrosine-Phosphorylated Peptide From Slp76
Length = 138
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 9 VLSQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKG-YKIKGFTKEFS 67
+L+ G F+VR+ FA+S++ E H+ I TA+G Y+I K F
Sbjct: 41 ILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIM------TAEGLYRITE-KKAFR 93
Query: 68 SLTSLITHHSVMPELLPCTLSLH 90
LT L+ + L C SL
Sbjct: 94 GLTELVEFYQ-QNSLKDCFKSLD 115
>pdb|3EAZ|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-
Terminal Src Kinase), C122s Mutant
Length = 106
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G F+VREST PG + L + + + HY I+ A I F +L L+ H
Sbjct: 30 GLFLVRESTNYPGDYTLCVSSDGK-----VEHYRIMYHASKLSIDEEVY-FENLMQLVEH 83
Query: 76 HSVMPELLPCT 86
++ + L CT
Sbjct: 84 YTSDADGL-CT 93
>pdb|2OQ1|A Chain A, Tandem Sh2 Domains Of Zap-70 With 19-Mer Zeta1 Peptide
Length = 254
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G F++R+ G + LSL FHH I L Y I G K L
Sbjct: 30 GLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQL----NGTYAIAG-GKAHCGPAELCEF 84
Query: 76 HSVMPELLPCTL 87
+S P+ LPC L
Sbjct: 85 YSRDPDGLPCNL 96
>pdb|1M61|A Chain A, Crystal Structure Of The Apo Sh2 Domains Of Zap-70
Length = 259
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G F++R+ G + LSL FHH I L Y I G K L
Sbjct: 35 GLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQL----NGTYAIAG-GKAHCGPAELCEF 89
Query: 76 HSVMPELLPCTL 87
+S P+ LPC L
Sbjct: 90 YSRDPDGLPCNL 101
>pdb|2CI8|A Chain A, Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomplexed
Length = 99
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G F++R+S + P F++SL+ + H + + T Y I ++FS++ L+ H
Sbjct: 24 GDFLIRDSESSPNDFSVSLKAQGKNKHFKVQ---LKETV--YCIG--QRKFSTMEELVEH 76
Query: 76 HSVMP 80
+ P
Sbjct: 77 YKKAP 81
>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70
Length = 613
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G F++R+ G + LSL FHH I L Y I G K L
Sbjct: 32 GLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQL----NGTYAIAG-GKAHCGPAELCEF 86
Query: 76 HSVMPELLPCTL 87
+S P+ LPC L
Sbjct: 87 YSRDPDGLPCNL 98
>pdb|2CI9|A Chain A, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide
From Epec Protein Tir
pdb|2CI9|B Chain B, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide
From Epec Protein Tir
Length = 102
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G F++R+S + P F++SL+ + H + + T Y I ++FS++ L+ H
Sbjct: 28 GDFLIRDSESSPNDFSVSLKAQGKNKHFKVQ---LKETV--YCIG--QRKFSTMEELVEH 80
Query: 76 HSVMP 80
+ P
Sbjct: 81 YKKAP 85
>pdb|2BBU|A Chain A, Solution Structure Of Mouse Socs3 In Complex With A
Phosphopeptide From The Gp130 Receptor
Length = 164
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 9 VLSQEPVGAFMVRESTTKPGCFALSLRV 36
+LS EP G F++R+S+ + F LS++
Sbjct: 38 LLSAEPAGTFLIRDSSDQRHFFTLSVKT 65
>pdb|1JWO|A Chain A, Crystal Structure Analysis Of The Sh2 Domain Of The Csk
Homologous Kinase Chk
Length = 97
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITH 75
G F+VRES PG + L + ++ + HY +L G+ F +L ++ H
Sbjct: 26 GLFLVRESARHPGDYVLCVSFGRD-----VIHYRVLHR-DGHLTIDEAVFFCNLMDMVEH 79
Query: 76 HS 77
+S
Sbjct: 80 YS 81
>pdb|2CS0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Hsh2d
Protein
Length = 119
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 3 QEITLEVLSQEPVGAFMVRESTTKPGCFALSLRVPKEFHHLGIAHYLILRTAKG-YKIKG 61
+E +L +P+G+F++R S + G + LS + H+++ G + I G
Sbjct: 25 REDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQSS-----CCHFMVKLLDDGTFMIPG 78
Query: 62 FTKEFSSLTSLITHHSVMP-----ELL--PC 85
+SL +L+T H P ELL PC
Sbjct: 79 EKVAHTSLDALVTFHQQKPIEPRRELLTQPC 109
>pdb|2QJ0|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 29 CFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITHHSVMPELLPCTLS 88
CF L+L + H G+ L G +IK +E + + +H V + LS
Sbjct: 406 CFFLTL----TYLHYGLGGTLSFEEKXGSEIKALKEEIEKVKKIAANHDVFARFITAQLS 461
>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 29 CFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITHHSVMPELLPCTLS 88
CF L+L + H G+ L G +IK +E + + +H V + LS
Sbjct: 406 CFFLTL----TYLHYGLGGTLSFEEKMGSEIKALKEEIEKVKKIAANHDVFARFITAQLS 461
>pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Rad23
pdb|3M63|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Dsk2
Length = 968
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 29 CFALSLRVPKEFHHLGIAHYLILRTAKGYKIKGFTKEFSSLTSLITHHSVMPELLPCTLS 88
CF L+L + H G+ L G +IK +E + + +H V + LS
Sbjct: 392 CFFLTL----TYLHYGLGGTLSFEEKMGSEIKALKEEIEKVKKIAANHDVFARFITAQLS 447
>pdb|3US4|A Chain A, Crystal Structure Of A Sh2 Domain Of A
Megakaryocyte-Associated Tyrosine Kinase (Matk) From
Homo Sapiens At 1.50 A Resolution
Length = 98
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 16 GAFMVRESTTKPGCFALSLRVPKEFHHLGIAH 47
G F+VRES PG + L + ++ H + H
Sbjct: 27 GLFLVRESARHPGDYVLCVSFGRDVIHYRVLH 58
>pdb|2GE9|A Chain A, Solution Structures Of The Sh2 Domain Of Bruton's
Tyrosine Kinase
Length = 125
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 1 MIQEITLEVLSQE-PVGAFMVRESTTKPGCFALSLRVPKEFHHLG-IAHYLILRTAKGYK 58
M + ++L QE G F+VR+S+ K G + +S+ G I HY++ T +
Sbjct: 18 MTRSQAEQLLKQEGKEGGFIVRDSS-KAGKYTVSVFAKSTGDPQGVIRHYVVCSTPQSQY 76
Query: 59 IKGFTKEFSSLTSLITHH 76
FS++ LI +H
Sbjct: 77 YLAEKHLFSTIPELINYH 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,882,643
Number of Sequences: 62578
Number of extensions: 93260
Number of successful extensions: 280
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 123
length of query: 97
length of database: 14,973,337
effective HSP length: 63
effective length of query: 34
effective length of database: 11,030,923
effective search space: 375051382
effective search space used: 375051382
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)