BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3301
(608 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 82/180 (45%), Gaps = 29/180 (16%)
Query: 5 VSLRRNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVD 63
+S+ + ++ + +GD VGKT +++ S +FP + +P+ + + V ++V + D
Sbjct: 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 63
Query: 64 YSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGN 123
+ + + A + L +S++ AS + + W+P LR + +PIVLVG
Sbjct: 64 TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPN--VPIVLVGT 121
Query: 124 KVDLVD--------------------------YSTVESSAKTLKNISEMFYYAQKAVLHP 157
K+DL D + +E S+KT +N+ +F A K VL P
Sbjct: 122 KLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 31/182 (17%)
Query: 5 VSLRRNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVD 63
+S R ++ + +GD VGKT +++S S FP + VP+ + + V V + D
Sbjct: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
Query: 64 YSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGN 123
+ + + A V L +S++ AS + ++ W+P LR+ +PI+LVG
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGT 118
Query: 124 KVDLVDYST----------------------------VESSAKTLKNISEMFYYAQKAVL 155
K+DL D +E S+KT +N+ +F A K VL
Sbjct: 119 KLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178
Query: 156 HP 157
P
Sbjct: 179 QP 180
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 31/182 (17%)
Query: 5 VSLRRNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVD 63
+S R ++ + +GD VGKT L++S S FP + VP+ + + V V + D
Sbjct: 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62
Query: 64 YSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGN 123
+ + + A V L +S++ AS + +S W+P L++ +PIVLVG
Sbjct: 63 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGT 120
Query: 124 KVDLVDY----------------------------STVESSAKTLKNISEMFYYAQKAVL 155
K+DL D + +E S+K+ +N+ +F A + VL
Sbjct: 121 KLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180
Query: 156 HP 157
P
Sbjct: 181 QP 182
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 3/126 (2%)
Query: 5 VSLRRNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVD 63
+S R ++ + +GD VGKT +++S FP + VP+ + + V V + D
Sbjct: 1 MSTARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
Query: 64 YSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGN 123
+ + + A V L +S++ AS + + WLP L++ +PIVLVG
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKH--YAPGIPIVLVGT 118
Query: 124 KVDLVD 129
K+DL D
Sbjct: 119 KLDLRD 124
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEI---TIPPDVTPEMVPTHIVDYSEVD 68
R++LLGD VGKTSL ++ +L E++ T+ D E +VD E +
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVD--GEDTTLVVVDTWEAE 63
Query: 69 QTVDELTEE--IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
+ ++E +Q +VYS+ D S + S + R D +PI+LVGNK D
Sbjct: 64 KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADH-VPIILVGNKAD 122
Query: 127 LV-----------------DYSTVESSAKTLKNISEMF 147
L D +E+SA N++E+F
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
R+V+++L+GD GKTSL++ FPE P+ E + V + V HI D +
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 68 DQTVDELTEEIQ-KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
D D L A V+ L + V S D + + W P + + +PI++VG K D
Sbjct: 93 DD-YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKK--VPIIVVGCKTD 149
Query: 127 L 127
L
Sbjct: 150 L 150
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Query: 11 VRILLLGDRHVGKTSLILSLVSEEF-PELVPSKAEEITIPP-DVTPEMVPTHIVDYSEVD 68
++ILL+GD VGK+ L++ V ++F P + + + I D+ + V + D + +
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 69 QTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL- 127
+ T + A I LVY V D+ + + W + D ++LVGNK D+
Sbjct: 81 RFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEA-QLLLVGNKSDME 138
Query: 128 -----VDYST----------VESSAKTLKNISEMFYYAQKAVLHPM 158
D +ESSAK N++E+F+ K + +
Sbjct: 139 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + FP E +P+ + + V + V + D + +
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 88
Query: 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL 127
+ + V + +S+V AS + + + W P +R+ +T PI+LVG K+DL
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT--PIILVGTKLDL 146
Query: 128 VD 129
D
Sbjct: 147 RD 148
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 21/158 (13%)
Query: 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSK--AEEITIPPDVTPEMVPTHIVDYSEV 67
N +++LLGD GK+SL+L V ++F E S A + V V I D +
Sbjct: 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 71
Query: 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL 127
++ + A +V+ V + AS +R + W+ L+ + + + L GNK DL
Sbjct: 72 ERYHSLAPMYYRGAAAAIIVFDVTNQASFER-AKKWVQELQ-AQGNPNMVMALAGNKSDL 129
Query: 128 VDYSTV-----------------ESSAKTLKNISEMFY 148
+D V E+SAKT N+ E+FY
Sbjct: 130 LDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY 167
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + FP E +P+ + + V + V + D + +
Sbjct: 5 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 64
Query: 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL 127
+ + V + +S+V AS + + + W P +R+ +T PI+LVG K+DL
Sbjct: 65 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT--PIILVGTKLDL 122
Query: 128 VD 129
D
Sbjct: 123 RD 124
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + FP E +P+ + + +V + P ++ +
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA--NVMVDGKPVNLGLWDTA 86
Query: 68 DQT-VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKV 125
Q D L + V + +S+V AS + + + W P +R+ +T PI+LVG K+
Sbjct: 87 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT--PIILVGTKL 144
Query: 126 DLVD 129
DL D
Sbjct: 145 DLRD 148
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + FP E +P+ + + V + V + D + +
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL 127
+ + V + +S+V AS + + + W P +R+ +T PI+LVG K+DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT--PIILVGTKLDL 119
Query: 128 VD 129
D
Sbjct: 120 RD 121
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + FP E +P+ + + +V + P ++ +
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA--NVMVDGKPVNLGLWDTA 59
Query: 68 DQT-VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKV 125
Q D L + V + +S+V AS + + + W P +R+ +T PI+LVG K+
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT--PIILVGTKL 117
Query: 126 DLVD 129
DL D
Sbjct: 118 DLRD 121
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYS 65
L + ++ +++GD VGKT L++S + FP E +P+ + + +V + P ++ +
Sbjct: 4 LMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA--NVMVDGKPVNLGLWD 61
Query: 66 EVDQT----VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLV 121
Q + L+ +IC +S+V AS + + + W P +R+ +T PI+LV
Sbjct: 62 TAGQEDYDRLRPLSYPQTDVSLIC--FSLVSPASFENVRAKWYPEVRHHCPNT--PIILV 117
Query: 122 GNKVDLVD 129
G K+DL D
Sbjct: 118 GTKLDLRD 125
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + FP E +P+ + + V + V + D + +
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL 127
+ + V + +S+V AS + + + W P +R+ +T PI+LVG K+DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT--PIILVGTKLDL 119
Query: 128 VD 129
D
Sbjct: 120 RD 121
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Query: 11 VRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQ 69
V+ +L+GD VGKTSL++S + +P E +P+ + + V V + D + D+
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 70 TVDELTEEI-QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL 127
D+L + L +SVV +S +S W+P +R C PI+LVG + DL
Sbjct: 81 -FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR-CHCPK-APIILVGTQSDL 136
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + FP E +P+ + + +V + P ++ +
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA--NVMVDGKPVNLGLWDTA 59
Query: 68 DQT-VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKV 125
Q D L + V + +S+V AS + + + W P +R+ +T PI+LVG K+
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT--PIILVGTKL 117
Query: 126 DLVD 129
DL D
Sbjct: 118 DLRD 121
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + FP E +P+ + + +V + P ++ +
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS--ANVMVDGKPVNLGLWDTA 59
Query: 68 DQT-VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKV 125
Q D L + V + +S+V AS + + + W P +R+ +T PI+LVG K+
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT--PIILVGTKL 117
Query: 126 DLVD 129
DL D
Sbjct: 118 DLRD 121
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + FP E +P+ + + +V + P ++ +
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA--NVMVDGKPVNLGLWDTA 59
Query: 68 DQT-VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKV 125
Q D L + V + +S+V AS + + + W P +R+ +T PI+LVG K+
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT--PIILVGTKL 117
Query: 126 DLVD 129
DL D
Sbjct: 118 DLRD 121
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + FP E +P+ + + +V + P ++ +
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS--ANVMVDGKPVNLGLWDTA 59
Query: 68 DQT-VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKV 125
Q D L + V + +S+V AS + + + W P +R+ +T PI+LVG K+
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT--PIILVGTKL 117
Query: 126 DLVD 129
DL D
Sbjct: 118 DLRD 121
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + FP E +P+ + + +V + P ++ +
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS--ANVMVDGKPVNLGLWDTA 59
Query: 68 DQT-VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKV 125
Q D L + V + +S+V AS + + + W P +R+ +T PI+LVG K+
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT--PIILVGTKL 117
Query: 126 DLVD 129
DL D
Sbjct: 118 DLRD 121
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + FP E +P+ + + +V + P ++ +
Sbjct: 21 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS--ANVMVDGKPVNLGLWDTA 78
Query: 68 DQT-VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKV 125
Q D L + V + +S+V AS + + + W P +R+ +T PI+LVG K+
Sbjct: 79 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT--PIILVGTKL 136
Query: 126 DLVD 129
DL D
Sbjct: 137 DLRD 140
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 13/127 (10%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + FP E +P+ + + MV + V+
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-----ANVMVDSKPVNLGLW 56
Query: 68 DQTVDELTEEIQ-----KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVG 122
D E + ++ + V + +S+V AS + + + W P +R+ T PI+LVG
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPST--PIILVG 114
Query: 123 NKVDLVD 129
K+DL D
Sbjct: 115 TKLDLRD 121
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 20/159 (12%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELV-PSKAEEITIPPDVTPEMVPTHIVDYSEV 67
R ++++LG VGK++L + V F E P+ + +V + I+D +
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 61
Query: 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL 127
+Q ++ LVYS+ ++ + L LR D +P++LVGNK DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDD-VPMILVGNKCDL 120
Query: 128 VDYSTV------------------ESSAKTLKNISEMFY 148
D V ESSAK+ N++E+FY
Sbjct: 121 EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFY 159
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 6/137 (4%)
Query: 5 VSLRRNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVD 63
+S + ++ +++GD VGKT L++S + +FP E VP+ + + + E + D
Sbjct: 5 ISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFD 64
Query: 64 YSEVDQTVDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVG 122
+ + D L + V + +SVV +S + + W+P + + T P +LVG
Sbjct: 65 TAG-QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT--PFLLVG 121
Query: 123 NKVDLV-DYSTVESSAK 138
++DL D ST+E AK
Sbjct: 122 TQIDLRDDPSTIEKLAK 138
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 14/135 (10%)
Query: 1 MVMKVSLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITI-------PPDVT 53
+V + S R +I+++GD +VGKT L + FP+ E TI D+
Sbjct: 11 LVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT-----EATIGVDFRERAVDID 65
Query: 54 PEMVPTHIVDYSEVDQTVDELTEE-IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLV 112
E + + D + ++ + + + H + VY + + AS L + W+ + L+
Sbjct: 66 GERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPA-WIEECKQHLL 124
Query: 113 DTCLPIVLVGNKVDL 127
+P +LVGNK DL
Sbjct: 125 ANDIPRILVGNKCDL 139
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 20/159 (12%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELV-PSKAEEITIPPDVTPEMVPTHIVDYSEV 67
R ++++LG VGK++L + V F E P+ + +V + I+D +
Sbjct: 4 REYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 63
Query: 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL 127
+Q ++ LVYS+ ++ + L LR D +P++LVGNK DL
Sbjct: 64 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDD-VPMILVGNKCDL 122
Query: 128 VDYSTV------------------ESSAKTLKNISEMFY 148
D V ESSAK+ N++E+FY
Sbjct: 123 EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFY 161
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 21/168 (12%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPP-DVTPEMVPTHIVDYSEVDQ 69
++LL+GD VGK+ L+L + + E + + + I ++ + + I D + ++
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL-- 127
+ + AH I +VY V D S + + WL + + + LVGNK DL
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKL-LVGNKCDLTT 135
Query: 128 ---VDYST------------VESSAKTLKNISEMFYYAQKAVLHPMAP 160
VDY+T +E+SAK N+ + F + M P
Sbjct: 136 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGP 183
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 11/126 (8%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + FP E +P+ + + +V + P ++ +
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA--NVMVDGKPVNLGLWDTA 59
Query: 68 DQT----VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGN 123
Q + L+ +IC +S+V AS + + + W P +R+ +T PI+LVG
Sbjct: 60 GQEDYDRLRPLSYPQTDVSLIC--FSLVSPASFENVRAKWYPEVRHHCPNT--PIILVGT 115
Query: 124 KVDLVD 129
K+DL D
Sbjct: 116 KLDLRD 121
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 20/162 (12%)
Query: 11 VRILLLGDRHVGKTSLILSLVSEEF-PELVPSKAEEITIPP-DVTPEMVPTHIVDYSEVD 68
++ILL+GD VGK+ L++ V ++F P + + + I D+ + V I D + +
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 69 QTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL- 127
+ T + A I LVY + D+ + + W + D ++LVGNK D+
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEA-QLLLVGNKSDME 121
Query: 128 ---------------VDYSTVESSAKTLKNISEMFYYAQKAV 154
+ +ESSAK N++E+F+ K +
Sbjct: 122 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 13/139 (9%)
Query: 11 VRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYS--EV 67
++ +++GD VGKT L++S ++ FP E VP+ + + V + + D + E
Sbjct: 19 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 78
Query: 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL 127
+ L+ + +IC +SVV+ AS + W+P L+ + +P +L+G ++DL
Sbjct: 79 YDRLRPLSYPMTDVFLIC--FSVVNPASFQNVKEEWVPELKEYAPN--VPFLLIGTQIDL 134
Query: 128 VDYSTVESSAKTLKNISEM 146
D KTL +++M
Sbjct: 135 RD------DPKTLARLNDM 147
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 11/126 (8%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + FP E +P+ + + +V + P ++ +
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA--NVMVDGKPVNLGLWDTA 61
Query: 68 DQT----VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGN 123
Q + L+ +IC +S+V AS + + + W P +R+ +T PI+LVG
Sbjct: 62 GQEDYDRLRPLSYPQTDVSLIC--FSLVSPASFENVRAKWYPEVRHHCPNT--PIILVGT 117
Query: 124 KVDLVD 129
K+DL D
Sbjct: 118 KLDLRD 123
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 13/127 (10%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + FP E +P+ + + MV + V+
Sbjct: 8 QAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYS-----ANVMVDSKPVNLGLW 62
Query: 68 DQTVDELTEEIQ-----KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVG 122
D E + ++ + V + +S+V AS + + + W P +R+ T PI+LVG
Sbjct: 63 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPST--PIILVG 120
Query: 123 NKVDLVD 129
K+DL D
Sbjct: 121 TKLDLRD 127
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 11/126 (8%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + FP E +P+ + + +V + P ++ +
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA--NVMVDGKPVNLGLWDTA 59
Query: 68 DQT----VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGN 123
Q + L+ +IC +S+V AS + + + W P +R+ +T PI+LVG
Sbjct: 60 GQEDYDRLRPLSYPQTDVSLIC--FSLVSPASFENVRAKWYPEVRHHCPNT--PIILVGT 115
Query: 124 KVDLVD 129
K+DL D
Sbjct: 116 KLDLRD 121
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + +FP E VP+ + + + E + D + +
Sbjct: 6 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGL 65
Query: 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL 127
+ + V + +SVV +S + + W+P + + T P +LVG ++DL
Sbjct: 66 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT--PFLLVGTQIDL 123
Query: 128 V-DYSTVESSAK 138
D ST+E AK
Sbjct: 124 RDDPSTIEKLAK 135
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 20/140 (14%)
Query: 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYS 65
S ++ +I+L GD VGK+S ++ L EF E + + T+ D + T IVD
Sbjct: 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISA-----TLGVDF---QMKTLIVDGE 75
Query: 66 E-VDQTVDELTEE---------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC 115
V Q D +E +KA + L+Y V + S + W+ + + +T
Sbjct: 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHET- 133
Query: 116 LPIVLVGNKVDLVDYSTVES 135
+PI+LVGNK D+ D + E
Sbjct: 134 VPIMLVGNKADIRDTAATEG 153
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 12/161 (7%)
Query: 6 SLRRNV-RILLLGDRHVGKTSLILSLVSEEFPELVPS--KAEEITIPPDVTPEMVPTHIV 62
S ++N+ ++++LGD VGKTSL+ V++++ + + A+ +T V + V T V
Sbjct: 3 SRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQV 62
Query: 63 DYSEVDQTVDELTEEIQKAHVIC-LVYSVVDDASIDRLSSHWLPFLRNCLVDT--CLPIV 119
+ + L + C LVY V + +S + + S FL + V++ P V
Sbjct: 63 WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV 122
Query: 120 LVGNKVD------LVDYSTVESSAKTLKNISEMFYYAQKAV 154
++GNK+D +V + + AK+L +I A+ A+
Sbjct: 123 ILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + +FP E VP+ + + + E + D + +
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGL 61
Query: 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL 127
+ + V + +SVV +S + + W+P + + T P +LVG ++DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT--PFLLVGTQIDL 119
Query: 128 V-DYSTVESSAK 138
D ST+E AK
Sbjct: 120 RDDPSTIEKLAK 131
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 13/127 (10%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + FP E +P+ + + MV + V+
Sbjct: 9 QAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYS-----ANVMVDSKPVNLGLW 63
Query: 68 DQTVDELTEEIQ-----KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVG 122
D E + ++ + V + +S+V AS + + + W P +R+ T PI+LVG
Sbjct: 64 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPST--PIILVG 121
Query: 123 NKVDLVD 129
K+DL D
Sbjct: 122 TKLDLRD 128
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + +FP E VP+ + + + E + D +
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAG- 60
Query: 68 DQTVDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
+ D L + V + +SVV +S + + W+P + + T P +LVG ++D
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT--PFLLVGTQID 118
Query: 127 LV-DYSTVESSAK 138
L D ST+E AK
Sbjct: 119 LRDDPSTIEKLAK 131
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 20/162 (12%)
Query: 11 VRILLLGDRHVGKTSLILSLVSEEF-PELVPSKAEEITIPP-DVTPEMVPTHIVDYSEVD 68
++ILL+GD VGK+ L++ V ++F P + + + I D+ + V + D + +
Sbjct: 8 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 69 QTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL- 127
+ T + A I LVY V D+ + + W + D ++LVGNK D+
Sbjct: 68 RFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEA-QLLLVGNKSDME 125
Query: 128 ---------------VDYSTVESSAKTLKNISEMFYYAQKAV 154
+ +ESSAK N++E+F+ K +
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 167
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 11 VRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQ 69
++ +++GD VGKT L++S + FP E +P+ + + V + V + D + ++
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
+ V + +S+V AS + + W P +R+ +T PI+LVG K+DL D
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT--PIILVGTKLDLRD 273
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 11 VRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQ 69
++ +++GD VGKT L++S + FP E +P+ + + V + V + D + ++
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
+ V + +S+V AS + + W P +R+ +T PI+LVG K+DL D
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT--PIILVGTKLDLRD 273
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 35/177 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++GD GKT L++ ++FPE+ VP+ E +V + V + D + +
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG-QED 68
Query: 71 VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
D L VI + +S+ S++ + W P +++ + +PI+LVGNK DL +
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLRN 126
Query: 130 ------------------------------YSTVESSAKTLKNISEMFYYAQKAVLH 156
+ +E SAKT + E+F A +A L
Sbjct: 127 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 35/177 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++GD GKT L++ ++FPE+ VP+ E +V + V + D + +
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG-QED 67
Query: 71 VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
D L VI + +S+ S++ + W P +++ + +PI+LVGNK DL +
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLRN 125
Query: 130 ------------------------------YSTVESSAKTLKNISEMFYYAQKAVLH 156
+ +E SAKT + E+F A +A L
Sbjct: 126 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + +FP E VP+ + + + E + D +
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAG- 60
Query: 68 DQTVDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
+ D L + V + +SVV +S + + W+P + + T P +LVG ++D
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT--PFLLVGTQID 118
Query: 127 LV-DYSTVESSAK 138
L D ST+E AK
Sbjct: 119 LRDDPSTIEKLAK 131
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDY 64
S + ++ +++GD VGK L++S + FP E +P+ + + +V + P ++ +
Sbjct: 6 SGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSA--NVMVDGKPVNLGLW 63
Query: 65 SEVDQT-VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVG 122
Q D L + V + +S+V AS + + + W P +R+ +T PI+LVG
Sbjct: 64 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT--PIILVG 121
Query: 123 NKVDLVD 129
K+DL D
Sbjct: 122 TKLDLRD 128
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 11 VRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQ 69
++ +++GD VGKT L++S + FP E +P+ + + V + V + D + ++
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
+ V + +S+V AS + + W P +R+ +T PI+LVG K+DL D
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNT--PIILVGTKLDLRD 273
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + +FP E VP+ + + + E + D +
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG- 60
Query: 68 DQTVDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
+ D L + V + +SVV +S + + W+P + + T P +LVG ++D
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT--PFLLVGTQID 118
Query: 127 LV-DYSTVESSAK 138
L D ST+E AK
Sbjct: 119 LRDDPSTIEKLAK 131
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + +FP E VP+ + + + E + D +
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG- 60
Query: 68 DQTVDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
+ D L + V + +SVV +S + + W+P + + T P +LVG ++D
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT--PFLLVGTQID 118
Query: 127 LV-DYSTVESSAK 138
L D ST+E AK
Sbjct: 119 LRDDPSTIEKLAK 131
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 35/177 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++GD GKT L++ ++FPE+ VP+ E +V + V + D + +
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG-QED 65
Query: 71 VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
D L VI + +S+ S++ + W P +++ + +PI+LVGNK DL +
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLRN 123
Query: 130 ------------------------------YSTVESSAKTLKNISEMFYYAQKAVLH 156
+ +E SAKT + E+F A +A L
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + +FP E VP+ + + + E + D +
Sbjct: 4 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG- 62
Query: 68 DQTVDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
+ D L + V + +SVV +S + + W+P + + T P +LVG ++D
Sbjct: 63 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT--PFLLVGTQID 120
Query: 127 LV-DYSTVESSAK 138
L D ST+E AK
Sbjct: 121 LRDDPSTIEKLAK 133
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 35/177 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++GD GKT L++ ++FPE+ VP+ E +V + V + D + +
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG-QED 67
Query: 71 VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
D L VI + +S+ S++ + W P +++ + +PI+LVGNK DL +
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLRN 125
Query: 130 ------------------------------YSTVESSAKTLKNISEMFYYAQKAVLH 156
+ +E SAKT + E+F A +A L
Sbjct: 126 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + +FP E VP+ + + + E + D +
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG- 60
Query: 68 DQTVDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
+ D L + V + +SVV +S + + W+P + + T P +LVG ++D
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT--PFLLVGTQID 118
Query: 127 LV-DYSTVESSAK 138
L D ST+E AK
Sbjct: 119 LRDDPSTIEKLAK 131
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + +FP E VP+ + + + E + D +
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG- 60
Query: 68 DQTVDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
+ D L + V + +SVV +S + + W+P + + T P +LVG ++D
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT--PFLLVGTQID 118
Query: 127 LV-DYSTVESSAK 138
L D ST+E AK
Sbjct: 119 LRDDPSTIEKLAK 131
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 8 RRNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSE 66
++ ++I+++GD VGKT L+L+ E P VP+ E + E H+ D +
Sbjct: 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 80
Query: 67 VDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
++ + V+ L ++V + S D +S+ W P +++ +DT VLVG KVD
Sbjct: 81 QEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH-YIDTA-KTVLVGLKVD 138
Query: 127 L 127
L
Sbjct: 139 L 139
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + +FP E VP+ + + + E + D +
Sbjct: 6 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG- 64
Query: 68 DQTVDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
+ D L + V + +SVV +S + + W+P + + T P +LVG ++D
Sbjct: 65 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT--PFLLVGTQID 122
Query: 127 LV-DYSTVESSAK 138
L D ST+E AK
Sbjct: 123 LRDDPSTIEKLAK 135
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + +FP E VP+ + + + E + D +
Sbjct: 4 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG- 62
Query: 68 DQTVDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
+ D L + V + +SVV +S + + W+P + + T P +LVG ++D
Sbjct: 63 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT--PFLLVGTQID 120
Query: 127 LV-DYSTVESSAK 138
L D ST+E AK
Sbjct: 121 LRDDPSTIEKLAK 133
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + +FP E VP+ + + + E + D +
Sbjct: 5 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG- 63
Query: 68 DQTVDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
+ D L + V + +SVV +S + + W+P + + T P +LVG ++D
Sbjct: 64 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT--PFLLVGTQID 121
Query: 127 LV-DYSTVESSAK 138
L D ST+E AK
Sbjct: 122 LRDDPSTIEKLAK 134
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 22/160 (13%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEF-PELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
R ++++LG VGK++L + V F E P+ + +V + I+D +
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDT-CLPIVLVGNKVD 126
+Q ++ LVYS+ ++ + L LR + DT +P++LVGNK D
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILR--VKDTEDVPMILVGNKCD 119
Query: 127 LVDYSTV------------------ESSAKTLKNISEMFY 148
L D V ESSAK+ N++E+FY
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY 159
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 8 RRNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSE 66
++ ++I+++GD VGKT L+L+ E P VP+ E + E H+ D +
Sbjct: 20 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 79
Query: 67 VDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
++ + V+ L ++V + S D +S+ W P +++ +DT VLVG KVD
Sbjct: 80 QEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH-YIDTA-KTVLVGLKVD 137
Query: 127 L 127
L
Sbjct: 138 L 138
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 14/127 (11%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITI-------PPDVTPEMVPTHI 61
R +I+++GD +VGKT L + FP+ E TI D+ E + +
Sbjct: 28 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT-----EATIGVDFRERAVDIDGERIKIQL 82
Query: 62 VDYSEVDQTVDELTEE-IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVL 120
D + ++ + + + H + VY + AS L + W+ + L+ +P +L
Sbjct: 83 WDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPA-WIEECKQHLLANDIPRIL 141
Query: 121 VGNKVDL 127
VGNK DL
Sbjct: 142 VGNKCDL 148
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + +FP E VP+ + + + E + D +
Sbjct: 5 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG- 63
Query: 68 DQTVDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
+ D L + V + +SVV +S + + W+P + + T P +LVG ++D
Sbjct: 64 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT--PFLLVGTQID 121
Query: 127 LV-DYSTVESSAK 138
L D ST+E AK
Sbjct: 122 LRDDPSTIEKLAK 134
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + +FP E VP+ + + + E + D +
Sbjct: 3 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG- 61
Query: 68 DQTVDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
+ D L + V + +SVV +S + + W+P + + T P +LVG ++D
Sbjct: 62 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT--PFLLVGTQID 119
Query: 127 LV-DYSTVESSAK 138
L D ST+E AK
Sbjct: 120 LRDDPSTIEKLAK 132
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + +FP E VP+ + + + E + D +
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG- 60
Query: 68 DQTVDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
+ D L + V + +SVV +S + + W+P + + T P +LVG ++D
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT--PFLLVGTQID 118
Query: 127 LV-DYSTVESSAK 138
L D ST+E AK
Sbjct: 119 LRDDPSTIEKLAK 131
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 35/177 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++GD GKT L++ ++FPE+ VP+ E +V + V + D + +
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG-QED 69
Query: 71 VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
D L VI + +S+ S++ + W P +++ + +PI+LVGNK DL +
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLRN 127
Query: 130 ------------------------------YSTVESSAKTLKNISEMFYYAQKAVLH 156
+ +E SAKT + E+F A +A L
Sbjct: 128 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + +FP E VP+ + + + E + D +
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG- 60
Query: 68 DQTVDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
+ D L + V + +SVV +S + + W+P + + T P +LVG ++D
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT--PFLLVGTQID 118
Query: 127 LV-DYSTVESSAK 138
L D ST+E AK
Sbjct: 119 LRDDPSTIEKLAK 131
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + +FP E VP+ + + + E + D +
Sbjct: 12 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG- 70
Query: 68 DQTVDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
+ D L + V + +SVV +S + + W+P + + T P +LVG ++D
Sbjct: 71 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT--PFLLVGTQID 128
Query: 127 LV-DYSTVESSAK 138
L D ST+E AK
Sbjct: 129 LRDDPSTIEKLAK 141
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 35/177 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++GD GKT L++ ++FPE+ VP+ E +V + V + D + +
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG-QED 66
Query: 71 VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
D L VI + +S+ S++ + W P +++ + +PI+LVGNK DL +
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLRN 124
Query: 130 ------------------------------YSTVESSAKTLKNISEMFYYAQKAVLH 156
+ +E SAKT + E+F A +A L
Sbjct: 125 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 22/160 (13%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELV-PSKAEEITIPPDVTPEMVPTHIVDYSEV 67
R ++++LG VGK++L + V F E P+ + +V + I+D +
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDT-CLPIVLVGNKVD 126
+Q ++ LVYS+ ++ + L LR + DT +P++LVGNK D
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILR--VKDTEDVPMILVGNKCD 119
Query: 127 LVDYSTV------------------ESSAKTLKNISEMFY 148
L D V ESSAK+ N++E+FY
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY 159
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Query: 11 VRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQ 69
++ +++GD VGKT L++S + FP E +P+ + + +V + P ++ + Q
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA--NVMVDGKPVNLGLWDTAGQ 62
Query: 70 T-VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL 127
D L + V + +S+V AS + + + W P +R+ T PI+LVG K+DL
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT--PILLVGTKLDL 120
Query: 128 VD 129
D
Sbjct: 121 RD 122
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + FP E +P+ + + +V + P ++ +
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS--ANVMVDGKPVNLGLWDTA 59
Query: 68 DQT-VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKV 125
Q D L + V + +S+V AS + + + W P +R+ T PI+LVG K+
Sbjct: 60 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT--PILLVGTKL 117
Query: 126 DLVD 129
DL D
Sbjct: 118 DLRD 121
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Query: 11 VRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQ 69
++ +++GD VGKT L++S + FP E +P+ + + +V + P ++ + Q
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA--NVMVDGKPVNLGLWDTAGQ 62
Query: 70 T-VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL 127
D L + V + +S+V AS + + + W P +R+ T PI+LVG K+DL
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT--PILLVGTKLDL 120
Query: 128 VD 129
D
Sbjct: 121 RD 122
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 35/177 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++GD GKT L++ ++FPE+ VP+ E +V + V + D + +
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG-QED 67
Query: 71 VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
D L VI + +S+ S++ + W P +++ + +PI+LVGNK DL +
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLRN 125
Query: 130 ------------------------------YSTVESSAKTLKNISEMFYYAQKAVLH 156
+ +E SAKT + E+F A +A L
Sbjct: 126 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + +FP E VP+ + + + E + D +
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG- 60
Query: 68 DQTVDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
+ D L + V + +SVV +S + + W+P + + T P +LVG ++D
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT--PFLLVGTQID 118
Query: 127 LV-DYSTVESSAK 138
L D ST+E AK
Sbjct: 119 LRDDPSTIEKLAK 131
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 20/161 (12%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEF-PELVPSKAEEITIPP-DVTPEMVPTHIVDYSEVDQ 69
+ILL+GD VGK+ L++ V ++F P + + + I D+ + V I D + ++
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL-- 127
T + A I LVY + D+ + + W + D ++LVGNK D
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNI-KQWFKTVNEHANDEA-QLLLVGNKSDXET 122
Query: 128 --------------VDYSTVESSAKTLKNISEMFYYAQKAV 154
+ +ESSAK N++E+F+ K +
Sbjct: 123 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + P E +P+ + + +V + P ++ +
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSA--NVMVDGKPVNLGLWDTA 86
Query: 68 DQT-VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKV 125
Q D L + V + +S+V AS + + + W P +R+ +T PI+LVG K+
Sbjct: 87 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT--PIILVGTKL 144
Query: 126 DLVD 129
DL D
Sbjct: 145 DLRD 148
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 35/177 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++GD GKT L++ +EFPE+ VP+ E +V + V + D + +
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAG-QED 85
Query: 71 VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
D L VI + +SV S++ + W+P +++ + +PI+LV NK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN--VPIILVANKKDLRS 143
Query: 130 ------------------------------YSTVESSAKTLKNISEMFYYAQKAVLH 156
Y +E SAKT + + E+F A +A L
Sbjct: 144 DEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 24/176 (13%)
Query: 1 MVMKVSLRRNVRILLLGDRHVGKTSLILSLVSEEF-PELVPS-KAEEITIPPDVTPEMVP 58
M K SL +++LLGD VGK+SL+ V+ +F +L + E + +V V
Sbjct: 3 MAGKSSL---FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVT 59
Query: 59 THIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVD--TCL 116
I D + ++ T + + L +SV D S LS+ F+ V
Sbjct: 60 MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 119
Query: 117 PIVLVGNKVDLV-----------------DYSTVESSAKTLKNISEMFYYAQKAVL 155
P V++GNK+D+ DY E+SAK N++ F A + VL
Sbjct: 120 PFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 175
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 33/176 (18%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++GD GKT L++ ++FPE+ VP+ E +V + V + D + ++
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69
Query: 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD- 129
VI + +S+ S++ + W P +++ + +PI+LVGNK DL +
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLRND 127
Query: 130 -----------------------------YSTVESSAKTLKNISEMFYYAQKAVLH 156
+ +E SAKT + E+F A +A L
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 24/176 (13%)
Query: 1 MVMKVSLRRNVRILLLGDRHVGKTSLILSLVSEEF-PELVPS-KAEEITIPPDVTPEMVP 58
M K SL +++LLGD VGK+SL+ V+ +F +L + E + +V V
Sbjct: 1 MAGKSSL---FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVT 57
Query: 59 THIVDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVD--TCL 116
I D + ++ T + + L +SV D S LS+ F+ V
Sbjct: 58 MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 117
Query: 117 PIVLVGNKVDLV-----------------DYSTVESSAKTLKNISEMFYYAQKAVL 155
P V++GNK+D+ DY E+SAK N++ F A + VL
Sbjct: 118 PFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + +FP E VP+ + + + E + D +
Sbjct: 2 QTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG- 60
Query: 68 DQTVDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
+ D L + V + +SVV +S + + W+P + + T P +LVG ++D
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT--PFLLVGTQID 118
Query: 127 LV-DYSTVESSAK 138
L D ST+E AK
Sbjct: 119 LRDDPSTIEKLAK 131
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 21/155 (13%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPS--KAEEITIPPDVTPEMVPTHIVDYSEVDQ 69
+++LLG+ VGK+SL+L V +F E S A +T + V I D + +++
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
+ A +VY + ++ S R + +W+ L+ + I L GNK DL +
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQR-QASPNIVIALSGNKADLAN 124
Query: 130 YSTV-----------------ESSAKTLKNISEMF 147
V E+SAKT N++E+F
Sbjct: 125 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 159
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 22/157 (14%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++G VGK++L L + +EF E P+KA+ + E V I+D + ++
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL--- 127
+ LV+S+ + S + LR + +P+++VGNK DL
Sbjct: 69 AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 128
Query: 128 ----------------VDYSTVESSAKTLKNISEMFY 148
V Y VE+SAKT N+ ++F+
Sbjct: 129 RQVPVEEARSKAEEWGVQY--VETSAKTRANVDKVFF 163
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 31/160 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMV--PTHIVDYSEVDQ 69
+++LLG+ VGK+SL+L V +F E +E TI + V V + D
Sbjct: 8 KLVLLGESRVGKSSLVLRFVKGQFHEF-----QESTIGAAFLTQTVCLDDTTVKFEIWDT 62
Query: 70 TVDELTEEI-----QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNK 124
E + + A +VY + ++ S R + +W+ L+ + I L GNK
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQR-QASPNIVIALSGNK 120
Query: 125 VDLVDYSTV-----------------ESSAKTLKNISEMF 147
DL + V E+SAKT N++E+F
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + +FP E VP+ + + + E + D +
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAG- 60
Query: 68 DQTVDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
+ D L + V + +SVV +S + + W+P + + T P +LVG ++D
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT--PFLLVGTQID 118
Query: 127 LV-DYSTVESSAK 138
L D ST+E AK
Sbjct: 119 LRDDPSTIEKLAK 131
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 20/161 (12%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEF-PELVPSKAEEITIPP-DVTPEMVPTHIVDYSEVDQ 69
+ILL+GD VGK+ L++ V ++F P + + + I D+ + V + D + ++
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL-- 127
T + A I LVY V D+ + + W + D ++LVGNK D
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNI-KQWFKTVNEHANDEA-QLLLVGNKSDXET 122
Query: 128 --------------VDYSTVESSAKTLKNISEMFYYAQKAV 154
+ +ESSAK N++E+F+ K +
Sbjct: 123 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 35/177 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++GD GKT L++ ++FPE+ VP+ E +V + V + D + +
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG-QED 66
Query: 71 VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
D L VI + +S+ S++ + W P +++ + +PI+LVGNK DL +
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLRN 124
Query: 130 ------------------------------YSTVESSAKTLKNISEMFYYAQKAVLH 156
+ +E SAKT + E+F A +A L
Sbjct: 125 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 31/160 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMV--PTHIVDYSEVDQ 69
+++LLG+ VGK+SL+L V +F E +E TI + V V + D
Sbjct: 8 KLVLLGESEVGKSSLVLRFVKGQFHEF-----QESTIGAAFLTQTVCLDDTTVKFEIWDT 62
Query: 70 TVDELTEEI-----QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNK 124
E + + A +VY + ++ S R + +W+ L+ + I L GNK
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQR-QASPNIVIALSGNK 120
Query: 125 VDLVDYSTV-----------------ESSAKTLKNISEMF 147
DL + V E+SAKT N++E+F
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 22/157 (14%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++G VGK++L L + +EF E P+KA+ + E V I+D + ++
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL--- 127
+ LV+S+ + S + LR + +P+++VGNK DL
Sbjct: 65 AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 124
Query: 128 ----------------VDYSTVESSAKTLKNISEMFY 148
V Y VE+SAKT N+ ++F+
Sbjct: 125 RQVPVEEARSKAEEWGVQY--VETSAKTRANVDKVFF 159
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 26/143 (18%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIV----- 62
+ ++ +++GD VGKT L++S + FP E +P+ + + +V + P ++
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA--NVMVDGKPVNLGLWDTA 61
Query: 63 ---DYSEV-----DQTVDEL--------TEEIQKAHVICLVYSVVDDASIDRLSSHWLPF 106
DY + QTV E ++ A V + +S+V AS + + + W P
Sbjct: 62 GQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPE 121
Query: 107 LRNCLVDTCLPIVLVGNKVDLVD 129
+R+ +T PI+LVG K+DL D
Sbjct: 122 VRHHCPNT--PIILVGTKLDLRD 142
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 31/160 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMV--PTHIVDYSEVDQ 69
+++LLG+ VGK+SL+L V +F E +E TI + V V + D
Sbjct: 8 KLVLLGESKVGKSSLVLRFVKGQFHEF-----QESTIGAAFLTQTVCLDDTTVKFEIWDT 62
Query: 70 TVDELTEEI-----QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNK 124
E + + A +VY + ++ S R + +W+ L+ + I L GNK
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQR-QASPNIVIALSGNK 120
Query: 125 VDLVDYSTV-----------------ESSAKTLKNISEMF 147
DL + V E+SAKT N++E+F
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 35/177 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++GD GKT L++ ++FPE+ VP+ E +V + V + D + +
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG-QED 65
Query: 71 VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
D L VI + +S+ S++ + W P +++ + +PI+LVGNK DL +
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLRN 123
Query: 130 ------------------------------YSTVESSAKTLKNISEMFYYAQKAVLH 156
+ +E SAKT + E+F A +A L
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 21/155 (13%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPP-DVTPEMVPTHIVDYSEVDQ 69
++LL+GD VGK+ L+L + + E + + + I ++ + + I D + ++
Sbjct: 27 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 86
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL-- 127
+ + AH I +VY V D S + + WL + + + LVGNK DL
Sbjct: 87 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKL-LVGNKCDLTT 144
Query: 128 ---VDYST------------VESSAKTLKNISEMF 147
VDY+T +E+SAK N+ + F
Sbjct: 145 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 179
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + F E +P+ + + +V + P ++ +
Sbjct: 12 QAIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYS--ANVMVDGKPVNLGLWDTA 69
Query: 68 DQT-VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKV 125
Q D L + V + +S+V AS + + + W P +R+ +T PI+LVG K+
Sbjct: 70 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT--PIILVGTKL 127
Query: 126 DLVD 129
DL D
Sbjct: 128 DLRD 131
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 31/160 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMV--PTHIVDYSEVDQ 69
+++LLG+ VGK+SL+L V +F E +E TI + V V + D
Sbjct: 9 KLVLLGESAVGKSSLVLRFVKGQFHEF-----QESTIGAAFLTQTVCLDDTTVKFEIWDT 63
Query: 70 TVDELTEEI-----QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNK 124
E + + A +VY + ++ S R + +W+ L+ + I L GNK
Sbjct: 64 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQR-QASPNIVIALSGNK 121
Query: 125 VDLVDYSTV-----------------ESSAKTLKNISEMF 147
DL + V E+SAKT N++E+F
Sbjct: 122 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 161
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 35/177 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++GD GKT L++ ++FPE+ VP+ E +V + V + D + +
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG-QED 65
Query: 71 VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
D L VI + +S+ S++ + W P +++ + +PI+LVGNK DL +
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLRN 123
Query: 130 ------------------------------YSTVESSAKTLKNISEMFYYAQKAVLH 156
+ +E SAKT + E+F A +A L
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 21/155 (13%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPP-DVTPEMVPTHIVDYSEVDQ 69
++LL+GD VGK+ L+L + + E + + + I ++ + + I D + ++
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL-- 127
+ + AH I +VY V D S + + WL + + + LVGNK DL
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKL-LVGNKCDLTT 125
Query: 128 ---VDYST------------VESSAKTLKNISEMF 147
VDY+T +E+SAK N+ + F
Sbjct: 126 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 160
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 31/160 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMV--PTHIVDYSEVDQ 69
+++LLG+ VGK+SL+L V +F E +E TI + V V + D
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEF-----QESTIGAAFLTQTVCLDDTTVKFEIWDT 62
Query: 70 TVDELTEEI-----QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNK 124
E + + A +VY + ++ S R + +W+ L+ + I L GNK
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQR-QASPNIVIALSGNK 120
Query: 125 VDLVDYSTV-----------------ESSAKTLKNISEMF 147
DL + V E+SAKT N++E+F
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 21/155 (13%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPP-DVTPEMVPTHIVDYSEVDQ 69
++LL+GD VGK+ L+L + + E + + + I ++ + + I D + ++
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL-- 127
+ + AH I +VY V D S + + WL + + + LVGNK DL
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKL-LVGNKCDLTT 118
Query: 128 ---VDYST------------VESSAKTLKNISEMF 147
VDY+T +E+SAK N+ + F
Sbjct: 119 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 153
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 19/155 (12%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++G VGK++L L + +EF E P+KA+ + E V I+D + +
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD- 129
+ V+S+ + S + LR D +P +LVGNK DL D
Sbjct: 76 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR-VKEDENVPFLLVGNKSDLEDK 134
Query: 130 ----------------YSTVESSAKTLKNISEMFY 148
+ VE+SAKT N+ ++F+
Sbjct: 135 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF 169
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 21/155 (13%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPP-DVTPEMVPTHIVDYSEVDQ 69
++LL+GD VGK+ L+L + + E + + + I ++ + + I D + ++
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL-- 127
+ + AH I +VY V D S + + WL + + + LVGNK DL
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKL-LVGNKCDLTT 125
Query: 128 ---VDYST------------VESSAKTLKNISEMF 147
VDY+T +E+SAK N+ + F
Sbjct: 126 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 160
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 6/136 (4%)
Query: 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDY 64
S + ++ +++GD VGK L++S + +FP E VP+ + + + E + D
Sbjct: 6 SGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 65
Query: 65 SEVDQTVDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGN 123
+ + D L + V + +SVV +S + + W+P + + T P +LVG
Sbjct: 66 AG-QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT--PFLLVGT 122
Query: 124 KVDLV-DYSTVESSAK 138
++DL D ST+E AK
Sbjct: 123 QIDLRDDPSTIEKLAK 138
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 35/177 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++GD GKT L++ ++FPE+ VP+ E +V + V + D + +
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAG-QED 85
Query: 71 VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
D L VI + +S+ S++ + W P +++ + +PI+LVGNK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLRQ 143
Query: 130 ------------------------------YSTVESSAKTLKNISEMFYYAQKAVLH 156
+ +E SAKT + + E+F A +A L
Sbjct: 144 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 35/177 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++GD GKT L++ ++FPE+ VP+ E +V + V + D + +
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG-QED 63
Query: 71 VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
D L VI + +S+ S++ + W P +++ + +PI+LVGNK DL +
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLRN 121
Query: 130 ------------------------------YSTVESSAKTLKNISEMFYYAQKAVLH 156
+ +E SAKT + E+F A +A L
Sbjct: 122 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 21/155 (13%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPP-DVTPEMVPTHIVDYSEVDQ 69
++LL+GD VGK L+L + + E + + + I ++ + + I D + ++
Sbjct: 18 KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL-- 127
+ + AH I +VY V D S + + WL + + + LVGNK DL
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKL-LVGNKCDLTT 135
Query: 128 ---VDYST------------VESSAKTLKNISEMF 147
VDY+T +E+SAK N+ + F
Sbjct: 136 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 170
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 35/177 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++GD GKT L++ ++FPE+ VP+ E +V + V + D + +
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG-QED 65
Query: 71 VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
D L VI + +S+ S++ + W P +++ + +PI+LVGNK DL +
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLRN 123
Query: 130 ------------------------------YSTVESSAKTLKNISEMFYYAQKAVLH 156
+ +E SAKT + E+F A +A L
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 35/177 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++GD GKT L++ ++FPE+ VP+ E +V + V + D + +
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAG-QED 85
Query: 71 VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
D L VI + +S+ S++ + W P +++ + +PI+LVGNK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPN--VPIILVGNKKDLRQ 143
Query: 130 ------------------------------YSTVESSAKTLKNISEMFYYAQKAVLH 156
+ +E SAKT + + E+F A +A L
Sbjct: 144 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 21/162 (12%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPS--KAEEITIPPDVTPEMVPTHIVDYSEVDQ 69
+ +++GD VGK+ L+ ++F P E T +V+ + + I D + ++
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL-- 127
+ A +VY + ++ + LSS WL RN L + I+L+GNK DL
Sbjct: 77 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDARN-LTNPNTVIILIGNKADLEA 134
Query: 128 ---VDYST------------VESSAKTLKNISEMFYYAQKAV 154
V Y +E+SAKT +N+ + F A K +
Sbjct: 135 QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 35/176 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++GD GKT L++ ++FPE+ VP+ E +V + V + D + +
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG-QED 63
Query: 71 VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
D L VI + +S+ S++ + W P +++ + +PI+LVGNK DL +
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLRN 121
Query: 130 ------------------------------YSTVESSAKTLKNISEMFYYAQKAVL 155
+ +E SAKT + E+F A +A L
Sbjct: 122 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 31/160 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMV--PTHIVDYSEVDQ 69
+++LLG+ VGK+SL+L V +F E +E TI + V V + D
Sbjct: 8 KLVLLGESLVGKSSLVLRFVKGQFHEF-----QESTIGAAFLTQTVCLDDTTVKFEIWDT 62
Query: 70 TVDELTEEI-----QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNK 124
E + + A +VY + ++ S R + +W+ L+ + I L GNK
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQR-QASPNIVIALSGNK 120
Query: 125 VDLVDYSTV-----------------ESSAKTLKNISEMF 147
DL + V E+SAKT N++E+F
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 31/160 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMV--PTHIVDYSEVDQ 69
+++LLG+ VGK+SL+L V +F E +E TI + V V + D
Sbjct: 8 KLVLLGESPVGKSSLVLRFVKGQFHEF-----QESTIGAAFLTQTVCLDDTTVKFEIWDT 62
Query: 70 TVDELTEEI-----QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNK 124
E + + A +VY + ++ S R + +W+ L+ + I L GNK
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQR-QASPNIVIALSGNK 120
Query: 125 VDLVDYSTV-----------------ESSAKTLKNISEMF 147
DL + V E+SAKT N++E+F
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 21/162 (12%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPS--KAEEITIPPDVTPEMVPTHIVDYSEVDQ 69
+ +++GD VGK+ L+ ++F P E T +V+ + + I D + +
Sbjct: 32 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGR 91
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL-- 127
+ A +VY + ++ + LSS WL RN L + I+L+GNK DL
Sbjct: 92 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDARN-LTNPNTVIILIGNKADLEA 149
Query: 128 ---VDYST------------VESSAKTLKNISEMFYYAQKAV 154
V Y +E+SAKT +N+ + F A K +
Sbjct: 150 QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 21/165 (12%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELV--PSKAEEITIPPDVTPEMVPTHIVDYSEVDQ 69
+I+LLGD VGK+SL+ V+ +F + E + +V V I D + ++
Sbjct: 13 KIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 72
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVD--TCLPIVLVGNKVDL 127
T + + L +SV D S LS+ F+ V P V++GNK D+
Sbjct: 73 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDI 132
Query: 128 -----------------VDYSTVESSAKTLKNISEMFYYAQKAVL 155
DY E+SAK N++ F A + +L
Sbjct: 133 KERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRIL 177
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 33/176 (18%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++GD GKT L++ ++FP + VP+ E +V + V + D + +
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD- 129
VI + +S+ S++ + W P +++ + +PI+LVGNK DL +
Sbjct: 67 DRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLRND 124
Query: 130 -----------------------------YSTVESSAKTLKNISEMFYYAQKAVLH 156
+ +E SAKT + E+F A +A L
Sbjct: 125 EHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPPDVTPEMVPTHIVDYSEV 67
+ ++ +++GD VGKT L++S + + P E VP+ + + + E + D +
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG- 60
Query: 68 DQTVDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
+ D L + V + +SVV +S + + W+P + + T P +LVG ++D
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT--PFLLVGTQID 118
Query: 127 LV-DYSTVESSAK 138
L D ST+E AK
Sbjct: 119 LRDDPSTIEKLAK 131
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 35/177 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++GD GKT L++ ++FPE+ VP+ E +V + V + D + +
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAG-QED 65
Query: 71 VDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
D L VI + +S+ S++ + W P +++ + +PI+LVGNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLRQ 123
Query: 130 ------------------------------YSTVESSAKTLKNISEMFYYAQKAVLH 156
+ +E SAKT + + E+F A +A L
Sbjct: 124 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 180
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 19/155 (12%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++G VGK++L L + +EF E P+KA+ + E V I+D + ++
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD- 129
+ V+S+ + S + LR D +P +LVGNK DL D
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR-VKEDENVPFLLVGNKSDLEDK 126
Query: 130 ----------------YSTVESSAKTLKNISEMFY 148
+ VE+SAKT N+ ++F+
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF 161
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 21/168 (12%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPP-DVTPEMVPTHIVDYSEVDQ 69
++LL+GD VGK+ L+L + + E + + + I ++ + + I D + ++
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL-- 127
+ + AH I +VY V D S + + WL + + + LVG K DL
Sbjct: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKL-LVGIKCDLTT 127
Query: 128 ---VDYST------------VESSAKTLKNISEMFYYAQKAVLHPMAP 160
VDY+T +E+SAK N+ + F + M P
Sbjct: 128 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGP 175
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVT--PEMVPTHIVDY 64
L R ++++LG R VGKTSL V EF E E T VT + H+VD
Sbjct: 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVEN-TYSKIVTLGKDEFHLHLVDT 79
Query: 65 SEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNK 124
+ D+ I H LVYSV S + S + L T +P+VLVGNK
Sbjct: 80 AGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQK-LHEGHGKTRVPVVLVGNK 138
Query: 125 VDL 127
DL
Sbjct: 139 ADL 141
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 21/155 (13%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPS--KAEEITIPPDVTPEMVPTHIVDYSEVDQ 69
+++LLG+ VGK+SL+L V +F E S A +T + V I D + +++
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
+ A +VY + + + R + +W+ L+ + I L GNK DL
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQR-QASPNIVIALAGNKADLAS 124
Query: 130 YSTV-----------------ESSAKTLKNISEMF 147
V E+SAKT N++E+F
Sbjct: 125 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 159
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 6/136 (4%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
R+ + G VGK+SL+L V F E +P+ + + I D + Q
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 64
Query: 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD---- 126
I K H LVYS+ S++ L + +PI+LVGNK D
Sbjct: 65 PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 124
Query: 127 -LVDYSTVESSAKTLK 141
V S E+ A+T K
Sbjct: 125 REVQSSEAEALARTWK 140
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 21/155 (13%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPP-DVTPEMVPTHIVDYSEVDQ 69
++LL+GD VGK+ L+L + + E + + + I ++ + + I D + ++
Sbjct: 35 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL-- 127
+ + AH I +VY V D S + + WL + + + +LVGNK DL
Sbjct: 95 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASEN-VNKLLVGNKCDLTT 152
Query: 128 ---VDYST------------VESSAKTLKNISEMF 147
VDY+T +E+SAK N+ + F
Sbjct: 153 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 187
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 21/155 (13%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSK--AEEITIPPDVTPEMVPTHIVDYSEVDQ 69
+++LLG+ VGK+SL+L V +F E S A +T + V I D + ++
Sbjct: 9 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 68
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
+ A +VY + ++ S R + +W+ L+ + I L GNK DL +
Sbjct: 69 YHSLAPXYYRGAQAAIVVYDITNEESFAR-AKNWVKELQR-QASPNIVIALSGNKADLAN 126
Query: 130 YSTV-----------------ESSAKTLKNISEMF 147
V E+SAKT N++E+F
Sbjct: 127 KRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIF 161
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 26/159 (16%)
Query: 12 RILLLGDRHVGKTSL--ILSLVSEEFP---ELVPSKAEEITIPPDVTPEMVPTHIVDYSE 66
R++L+G++ VGK++L I + V + E++ E T+ D E ++D E
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVD--GESATIILLDMWE 65
Query: 67 VDQTVDELTEE-IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKV 125
+ L + +Q +VYS+ D AS ++ S + LR +PI+LVGNK
Sbjct: 66 NKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQ-LRRARQTEDIPIILVGNKS 124
Query: 126 DLV-----------------DYSTVESSAKTLKNISEMF 147
DLV D +E+SA N+ E+F
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163
>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
pdb|3L19|B Chain B, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
Length = 214
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 298 LTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGFLCY 357
L + F +FD+DG+G +S +E A +F L E W +EM + + +N+ G + + F C
Sbjct: 145 LESAFQKFDQDGNGKISVDELASVFGLDHLESKTW--KEMISGIDSNNDGDVDFEEF-CK 201
Query: 358 WI 359
I
Sbjct: 202 MI 203
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 23/156 (14%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE--LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQ 69
+++LLG+ VGKTSL+L +F + + +A +T ++ + V I D + ++
Sbjct: 22 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 81
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLV-DTCLPIVLVGNKVDL- 127
+ ++ LVY + D+ S ++ + W+ LR L + CL I VGNK+DL
Sbjct: 82 FHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICLCI--VGNKIDLE 138
Query: 128 ----VDYSTVES------------SAKTLKNISEMF 147
V ES SAK K I E+F
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 174
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 26/159 (16%)
Query: 12 RILLLGDRHVGKTSL--ILSLVSEEFP---ELVPSKAEEITIPPDVTPEMVPTHIVDYSE 66
R++L+G++ VGK++L I + V + E++ E T+ D E ++D E
Sbjct: 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVD--GESATIILLDMWE 96
Query: 67 VDQTVDELTEE-IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKV 125
+ L + +Q +VYS+ D AS ++ S + LR +PI+LVGNK
Sbjct: 97 NKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQ-LRRARQTEDIPIILVGNKS 155
Query: 126 DLV-----------------DYSTVESSAKTLKNISEMF 147
DLV D +E+SA N+ E+F
Sbjct: 156 DLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 19/155 (12%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++G VGK++L L + +EF E P+KA+ + E V I+D + +
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD- 129
+ V+S+ + S + LR D +P +LVGNK DL D
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR-VKEDENVPFLLVGNKSDLEDK 124
Query: 130 ----------------YSTVESSAKTLKNISEMFY 148
+ VE+SAKT N+ ++F+
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFF 159
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 19/155 (12%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++G VGK++L L + +EF E P+KA+ + E V I+D + +
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD- 129
+ V+S+ + S + LR D +P +LVGNK DL D
Sbjct: 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR-VKEDENVPFLLVGNKSDLEDK 138
Query: 130 ----------------YSTVESSAKTLKNISEMFY 148
+ VE+SAKT N+ ++F+
Sbjct: 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF 173
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 19/155 (12%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++G VGK++L L + +EF E P+KA+ + E V I+D + +
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD- 129
+ V+S+ + S + LR D +P +LVGNK DL D
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR-VKEDENVPFLLVGNKSDLEDK 126
Query: 130 ----------------YSTVESSAKTLKNISEMFY 148
+ VE+SAKT N+ ++F+
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF 161
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 11/148 (7%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITI-----PPDVTPEMVPTHIVDYSE 66
+I+L+G+ VGKT L+ FP P + I + ++ E V I D +
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQGLFP---PGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 84
Query: 67 VDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
++ + A+ + L Y + + S R WL + + + VLVGNK+D
Sbjct: 85 QERFRSITQSYYRSANALILTYDITCEESF-RCLPEWLREIEQYASNKVIT-VLVGNKID 142
Query: 127 LVDYSTV-ESSAKTLKNISEMFYYAQKA 153
L + V + A+ +M+Y A
Sbjct: 143 LAERREVSQQRAEEFSEAQDMYYLETSA 170
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 26/159 (16%)
Query: 12 RILLLGDRHVGKTSL--ILSLVSEEFP---ELVPSKAEEITIPPDVTPEMVPTHIVDYSE 66
R++L+G++ VGK++L I + V + E++ E T+ D E ++D E
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVD--GESATIILLDMWE 65
Query: 67 VDQTVDELTEE-IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKV 125
+ L + +Q +VYS+ D AS ++ S + LR +PI+LVGNK
Sbjct: 66 NKGENEWLHDHXMQVGDAYLIVYSITDRASFEKASELRIQ-LRRARQTEDIPIILVGNKS 124
Query: 126 DLV-----------------DYSTVESSAKTLKNISEMF 147
DLV D +E+SA N+ E+F
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELF 163
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 26/159 (16%)
Query: 12 RILLLGDRHVGKTSL--ILSLVSEEFP---ELVPSKAEEITIPPDVTPEMVPTHIVDYSE 66
R++L+G++ VGK++L I + V + E++ E T+ D E ++D E
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVD--GESATIILLDMWE 65
Query: 67 VDQTVDELTEE-IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKV 125
+ L + +Q +VYS+ D AS ++ S + LR +PI+LVGNK
Sbjct: 66 NKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQ-LRRARQTEDIPIILVGNKS 124
Query: 126 DLV-----------------DYSTVESSAKTLKNISEMF 147
DLV D +E+SA N+ E+F
Sbjct: 125 DLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 163
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 31/161 (19%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPD-------VTPEMVPTHIVDY 64
++LL+GD VGK+ L+L + + + S TI D + + V I D
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTDSYIS-----TIGVDFKIRTISLENKTVKLQIWDT 65
Query: 65 SEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNK 124
+ ++ + + AH I +VY V D S D + W+ + ++ + LVGNK
Sbjct: 66 AGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNV-KQWIQEIDRYAMENVNKL-LVGNK 123
Query: 125 VDLVDYSTV-----------------ESSAKTLKNISEMFY 148
DLV V E+SAK N+ + F+
Sbjct: 124 CDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFH 164
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 12/134 (8%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKA------EEITIPPDVTPEMVPTHIV 62
R ++I++LGD GKTSL E F + IT+P ++ V I
Sbjct: 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLN---VTLQIW 61
Query: 63 DYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDT-CLPIV-L 120
D L + I A + LVY + + S + L W ++ ++ P+V L
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLED-WYTVVKKVSEESETQPLVAL 120
Query: 121 VGNKVDLVDYSTVE 134
VGNK+DL T++
Sbjct: 121 VGNKIDLEHMRTIK 134
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 298 LTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGWITMQGF 354
L + F +FD+DG+G +S +E A +F L E W +EM + + +N+ G + + F
Sbjct: 428 LESAFQKFDQDGNGKISVDELASVFGLDHLESKTW--KEMISGIDSNNDGDVDFEEF 482
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPP-DVTPEMVPTHIVDYSEVDQ 69
++LL+G+ VGK+ L+L + + + + + + I ++ + V I D + ++
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
+ + +H I +VY V D S + + WL + T L + LVGNK DL D
Sbjct: 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKL-LVGNKCDLKD 127
Query: 130 YSTVE 134
VE
Sbjct: 128 KRVVE 132
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 21/155 (13%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPS--KAEEITIPPDVTPEMVPTHIVDYSEVDQ 69
+++LLG+ VGK+SL+L V +F E S A +T + V I D + ++
Sbjct: 10 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 69
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
+ A +VY + + + R + W+ L+ + I L GNK DL +
Sbjct: 70 YHSLAPMYYRGAQAAIVVYDITNQETFARAKT-WVKELQR-QASPSIVIALAGNKADLAN 127
Query: 130 YSTV-----------------ESSAKTLKNISEMF 147
V E+SAKT N++++F
Sbjct: 128 KRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLF 162
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 69/166 (41%), Gaps = 21/166 (12%)
Query: 11 VRILLLGDRHVGKTSLILSLVSEEFPELV--PSKAEEITIPPDVTPEMVPTHIVDYSEVD 68
++++LLGD VGK+SL+ V+ +F E + +V V I D + +
Sbjct: 8 LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
Query: 69 QTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVD--TCLPIVLVGNKVD 126
+ T + A L +SV D S + L + F+ V P V++GNKVD
Sbjct: 68 RFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD 127
Query: 127 L-----------------VDYSTVESSAKTLKNISEMFYYAQKAVL 155
DY +E+SAK N++ F A + VL
Sbjct: 128 KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPP-DVTPEMVPTHIVDYSEVDQ 69
++LL+G+ VGK+ L+L + + + + + + I ++ + V I D + ++
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
+ + +H I +VY V D S + + WL + T L + LVGNK DL D
Sbjct: 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKL-LVGNKCDLKD 127
Query: 130 YSTVE 134
VE
Sbjct: 128 KRVVE 132
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKA----EEITIPPDVTPEMVPTHIVDYSEV 67
+I+L+GD VGK++L+ EF + SK+ E T ++ + + I D +
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFN--MDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL 127
++ + + A +VY + +S + +HWL LR D + + L+GNK DL
Sbjct: 73 ERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELREN-ADDNVAVGLIGNKSDL 130
Query: 128 V 128
Sbjct: 131 A 131
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 5/138 (3%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPP-DVTPEMVPTHIVDYSEVDQ 69
++LL+G+ VGK+ L+L + + + + + + I ++ + V I D + ++
Sbjct: 23 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 82
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
+ + +H I +VY V D S + + WL + T L + LVGNK DL D
Sbjct: 83 FRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKL-LVGNKCDLKD 140
Query: 130 YSTVE-SSAKTLKNISEM 146
VE AK + ++M
Sbjct: 141 KRVVEYDVAKEFADANKM 158
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 34/165 (20%)
Query: 10 NVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPT--HIVDYSEV 67
+++++LLG+ VGK+S++L VS +F E +E TI + V H V +
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAE-----NKEPTIGAAFLTQRVTINEHTVKFEIW 57
Query: 68 DQTVDELTEEI-----QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVG 122
D E + + A +VY V S + + HW+ L + I LVG
Sbjct: 58 DTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIK-ARHWVKELHEQASKDII-IALVG 115
Query: 123 NKVDLVDYST--------------------VESSAKTLKNISEMF 147
NK+D + E+SAKT +N++++F
Sbjct: 116 NKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 11 VRILLLGDRHVGKTSLILSLVSEEF-PELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQ 69
V + +LG R GK++L + +++ F E P+ + + V + V ++D +++D
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLD- 80
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDT--CLPIVLVGNKVDL 127
T + AH +VYSV D SS +L L +T +P +L+GNK+D+
Sbjct: 81 TPRNCERYLNWAHAFLVVYSV-DSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM 139
Query: 128 VDYSTV 133
Y V
Sbjct: 140 AQYRQV 145
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 16/148 (10%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPD-------VTPEMVPTHI 61
R +++ LG++ VGKTSLI + + F + TI D + V +
Sbjct: 15 RKFKLVFLGEQSVGKTSLITRFMYDSF-----DNTYQATIGIDFLSKTMYLEDRTVRLQL 69
Query: 62 VDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLV 121
D + +++ + I+ + V +VY + + S + ++ W+ +R + I+LV
Sbjct: 70 WDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQ-TTKWIDDVRTERGSDVI-IMLV 127
Query: 122 GNKVDLVDYS--TVESSAKTLKNISEMF 147
GNK DL D ++E + K ++ MF
Sbjct: 128 GNKTDLADKRQVSIEEGERKAKELNVMF 155
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 9/148 (6%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKA----EEITIPPDVTPEMVPTHIVDYSEV 67
+I+L+GD VGK++L+ ++EF + SK+ E T +V + + I D + +
Sbjct: 12 KIVLIGDSGVGKSNLLSRFTTDEFN--IESKSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL 127
++ + + A +VY + +S + +HWL LR D + + L+GNK DL
Sbjct: 70 ERYRAITSAYYRGAVGALIVYDISKSSSYEN-CNHWLTELREN-ADDNVAVGLIGNKSDL 127
Query: 128 VDYSTVES-SAKTLKNISEMFYYAQKAV 154
V + AK ++M + A+
Sbjct: 128 AHLRAVPTDEAKNFAMENQMLFTETSAL 155
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 21/155 (13%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPP-DVTPEMVPTHIVDYSEVDQ 69
++LL+GD VGK+ L+L + + E + + + I ++ + + I D + ++
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL-- 127
+ + AH I +VY V D S + WL + + + LVGNK DL
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKL-LVGNKSDLTT 128
Query: 128 ---VDYST------------VESSAKTLKNISEMF 147
VD +T +E+SAK N+ + F
Sbjct: 129 KKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAF 163
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 21/155 (13%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPE--MVPTHIVDYSEVDQ 69
+++LLG+ VGK+SL+L V +F E S + + V + V I D + ++
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQER 66
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
+ A +VY + + + R + +W+ L+ + I L GNK DL
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQR-QASPNIVIALAGNKADLAS 124
Query: 130 YSTV-----------------ESSAKTLKNISEMF 147
V E+SAKT N++E+F
Sbjct: 125 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 159
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 21/155 (13%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPP-DVTPEMVPTHIVDYSEVDQ 69
++LL+GD VGK+ L+L + + E + + + I ++ + + I D + ++
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL-- 127
+ + AH I +VY V D S + WL + + + LVGNK DL
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKL-LVGNKSDLTT 128
Query: 128 ---VDYST------------VESSAKTLKNISEMF 147
VD +T +E+SAK N+ + F
Sbjct: 129 KKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAF 163
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 20/147 (13%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
+++ LG++ VGKTSLI + + F + TI D + + ++ D + Q
Sbjct: 4 KLVFLGEQSVGKTSLITRFMYDSF-----DNTYQATIGIDFLSKTM--YLEDRTVRLQLW 56
Query: 72 DELTEE---------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVG 122
D +E I+ + V +VY + + S + +S W+ +R + I+LVG
Sbjct: 57 DTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQ-TSKWIDDVRTERGSDVI-IMLVG 114
Query: 123 NKVDLVDYS--TVESSAKTLKNISEMF 147
NK DL D T+E + K +S MF
Sbjct: 115 NKTDLADKRQITIEEGEQRAKELSVMF 141
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 16/148 (10%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPD-------VTPEMVPTHI 61
R +++ LG++ VGKTSLI + + F + TI D + V +
Sbjct: 5 RKFKLVFLGEQSVGKTSLITRFMYDSF-----DNTYQATIGIDFLSKTMYLEDRTVRLQL 59
Query: 62 VDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLV 121
D + +++ + I+ + V +VY + + S + ++ W+ +R + I+LV
Sbjct: 60 WDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQ-TTKWIDDVRTERGSDVI-IMLV 117
Query: 122 GNKVDLVDYS--TVESSAKTLKNISEMF 147
GNK DL D ++E + K ++ MF
Sbjct: 118 GNKTDLADKRQVSIEEGERKAKELNVMF 145
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDY 64
S+RR +++++GD GKT L++ +FPE+ VP+ E +V V + D
Sbjct: 8 SIRR--KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDT 65
Query: 65 SEVDQTVDELTE-EIQKAHVICLVYSVVDDASIDRLSSHWLP-FLRNCLVDTCLPIVLVG 122
+ + D L ++V+ + +S+ S++ + W+ L C +PI+LVG
Sbjct: 66 AG-QEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFC---QGVPIILVG 121
Query: 123 NKVDLV-DYSTVE 134
KVDL D T+E
Sbjct: 122 CKVDLRNDPQTIE 134
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 20/127 (15%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
+++L+G+ VGK++L + F L A E P D + +VD EV V
Sbjct: 25 KVMLVGESGVGKSTL-----AGTFGGLQGDSAHEPENPEDTYERRI---MVDKEEVTLVV 76
Query: 72 DELTEE-----------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVL 120
++ E+ +Q +V+SV D S ++ L LR LP++L
Sbjct: 77 YDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPVIL 135
Query: 121 VGNKVDL 127
VGNK DL
Sbjct: 136 VGNKSDL 142
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVD 68
R +++ LG++ VGKTSLI + + F + TI D + + ++ D +
Sbjct: 13 RKFKLVFLGEQSVGKTSLITRFMYDSF-----DNTYQATIGIDFLSKTM--YLEDRTVRL 65
Query: 69 QTVDELTEE---------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIV 119
Q D +E I+ + V +VY + + S + +S W+ +R + I+
Sbjct: 66 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQ-TSKWIDDVRTERGSDVI-IM 123
Query: 120 LVGNKVDLVDYSTV--ESSAKTLKNISEMF 147
LVGNK DL D V E + K ++ MF
Sbjct: 124 LVGNKTDLSDKRQVSTEEGERKAKELNVMF 153
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 21/155 (13%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSK--AEEITIPPDVTPEMVPTHIVDYSEVDQ 69
+++LLG+ VGK+SL+L V +F E S A +T + V I D + ++
Sbjct: 5 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 64
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
+ A +VY + + + R + +W+ L+ + I L GNK DL
Sbjct: 65 YHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQR-QASPNIVIALAGNKADLAS 122
Query: 130 YSTV-----------------ESSAKTLKNISEMF 147
V E+SAKT N++E+F
Sbjct: 123 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIF 157
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 16/148 (10%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPD-------VTPEMVPTHI 61
R +++ LG++ VGKTSLI + + F + TI D + + +
Sbjct: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQA-----TIGIDFLSKTMYLEDRTIRLQL 66
Query: 62 VDYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLV 121
D + +++ + I+ + +VY + + S + ++ W+ +R + I+LV
Sbjct: 67 WDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQ-TTKWIDDVRTERGSDVI-IMLV 124
Query: 122 GNKVDLVDYS--TVESSAKTLKNISEMF 147
GNK DL D ++E + K ++ MF
Sbjct: 125 GNKTDLADKRQVSIEEGERKAKELNVMF 152
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 21/161 (13%)
Query: 6 SLRRNVRILLLGDRHVGKTSLILSLVSEEF-PELVPS-KAEEITIPPDVTPEMVPTHIVD 63
S R +++ LLGD VGK+S++ V + F P + P+ A +T E+ I D
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 64 YSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGN 123
+ +++ + + +VY + + + L +W+ LR + + + + GN
Sbjct: 62 TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIV-VAIAGN 119
Query: 124 KVDLVDYST-----------------VESSAKTLKNISEMF 147
K DL D VE+SAK NI+E+F
Sbjct: 120 KCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELF 160
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 20/127 (15%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
+++LLG+ VGK++L + F L A E+ D + +VD EV V
Sbjct: 14 KVMLLGESGVGKSTL-----AGTFGGLQGDNAHEMENSEDTYERRI---MVDKEEVTLIV 65
Query: 72 DELTEE-----------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVL 120
++ E+ +Q +V+SV D S ++ L LR LP++L
Sbjct: 66 YDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPVIL 124
Query: 121 VGNKVDL 127
VGNK DL
Sbjct: 125 VGNKSDL 131
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 66/165 (40%), Gaps = 22/165 (13%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFP-ELVPSKAEEITIPP-DVTPEMVPTHIVDYSEVDQ 69
++L++GD VGK+SL+L F + + + I ++ E V I D + ++
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVD 129
+ + H + +VY V S + WL + D C +LVGNK D +
Sbjct: 71 FRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCR--ILVGNKNDDPE 127
Query: 130 YSTV-----------------ESSAKTLKNISEMFYYAQKAVLHP 157
V E+SAK N+ EMF + VL
Sbjct: 128 RKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRA 172
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 36.6 bits (83), Expect = 0.039, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 23/156 (14%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE--LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQ 69
+++LLG+ VGKTSL+L +F + + +A +T ++ + V I D + ++
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCL-VDTCLPIVLVGNKVDL- 127
+ ++ LVY + D+ S ++ + W+ LR L + CL I VGNK+DL
Sbjct: 68 FHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICLCI--VGNKIDLE 124
Query: 128 ----VDYSTVES------------SAKTLKNISEMF 147
V ES SAK K I E+F
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHI--VDYSEVDQ 69
+++L+GD GKT+ + ++ EF K T+ +V P + T+ + ++ D
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEF-----EKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC--LPIVLVGNKVDL 127
E ++ + I +++ R++ +P LV C +PIVL GNKVD+
Sbjct: 67 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDI 126
Query: 128 VDYSTVESSAKTLKNISEMFYY 149
D V++ + + YY
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY 147
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 36.6 bits (83), Expect = 0.047, Method: Composition-based stats.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 33/167 (19%)
Query: 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDY------ 64
++++++G+ VGK+S+I + + + + +K + TI D + + D
Sbjct: 6 IKMVVVGNGAVGKSSMI-----QRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWD 60
Query: 65 SEVDQTVDELTEEIQKAHVIC-LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGN 123
+ + D +T+ + C LV+S D S + +SS W + + D +P LV N
Sbjct: 61 TAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISS-WREKVVAEVGD--IPTALVQN 117
Query: 124 KVDLVDYSTV-----ESSAKTLK------------NISEMF-YYAQK 152
K+DL+D S + E AK LK N+SE+F Y A+K
Sbjct: 118 KIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 164
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 21/158 (13%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEF-PELVPS-KAEEITIPPDVTPEMVPTHIVDYSE 66
R +++ LLGD VGK+S++ V + F P + P+ A +T E+ I D +
Sbjct: 4 RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63
Query: 67 VDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
++ + + +VY + + + L +W+ LR + + + + GNK D
Sbjct: 64 QERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIV-VAIAGNKCD 121
Query: 127 LVDYST-----------------VESSAKTLKNISEMF 147
L D VE+SAK NI+E+F
Sbjct: 122 LTDVREVMERDAKDYADSIHAIFVETSAKNAININELF 159
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKA----EEITIPPDVTPEMVPTHIVDYSEV 67
+++L+GD VGK++L+ EF + SK+ E T V + + I D +
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFN--LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL 127
++ + + A LVY + + + + WL LR+ D+ + I+LVGNK DL
Sbjct: 65 ERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDH-ADSNIVIMLVGNKSDL 122
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Query: 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
VRILLLG + GKT+L+ L SE+ + P++ I V + ++ D + +
Sbjct: 5 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI---KSVQSQGFKLNVWDIGGLRKI 61
Query: 71 VDELTEEIQKAHVICLVYSVVDDASIDRL--SSHWLPFLRNCLVDTCLPIVLVGNKVDLV 128
+ + L+Y V+D A R + L L +C+P+++ NK DL+
Sbjct: 62 RPYWRSYFENTDI--LIY-VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 118
Query: 129 DYSTVESSAKTL 140
+ A+ L
Sbjct: 119 TAAPASEIAEGL 130
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 12/143 (8%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEF-PELVPSKAEEITIPPDVTPEMVPTHI--VDYSEVD 68
+++L+GD GKT+ + ++ EF + VP T+ +V P + T+ + ++ D
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVP------TLGVEVHPLVFHTNRGPIKFNVWD 65
Query: 69 QTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC--LPIVLVGNKVD 126
E ++ + I +++ R++ +P LV C +PIVL GNKVD
Sbjct: 66 TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVD 125
Query: 127 LVDYSTVESSAKTLKNISEMFYY 149
+ D V++ + + YY
Sbjct: 126 IKD-RKVKAKSIVFHRKKNLQYY 147
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 8/140 (5%)
Query: 3 MKVSLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIV 62
+K + + VRILLLG + GKT+L+ L SE+ + P++ I V + ++
Sbjct: 9 LKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI---KSVQSQGFKLNVW 65
Query: 63 DYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRL--SSHWLPFLRNCLVDTCLPIVL 120
D + + + L+Y V+D A R + L L +C+P+++
Sbjct: 66 DIGGQRKIRPYWRSYFENTDI--LIY-VIDSADRKRFEETGQELTELLEEEKLSCVPVLI 122
Query: 121 VGNKVDLVDYSTVESSAKTL 140
NK DL+ + A+ L
Sbjct: 123 FANKQDLLTAAPASEIAEGL 142
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 35.4 bits (80), Expect = 0.087, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 23/156 (14%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE--LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQ 69
+++LLG+ VGKTSL+L +F + + A +T ++ + V I D + ++
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCL-VDTCLPIVLVGNKVDL- 127
+ ++ LVY + D+ S ++ + W+ LR L + CL I VGNK+DL
Sbjct: 68 FHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICLCI--VGNKIDLE 124
Query: 128 ----VDYSTVES------------SAKTLKNISEMF 147
V ES SAK K I E+F
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 35.4 bits (80), Expect = 0.091, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 20/127 (15%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
+++L+G+ VGK++L + F L A E+ D + +VD EV V
Sbjct: 4 KVMLVGESGVGKSTL-----AGTFGGLQGDHAHEMENSEDTYERRI---MVDKEEVTLIV 55
Query: 72 DELTEE-----------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVL 120
++ E+ +Q +V+SV D S ++ L LR LP++L
Sbjct: 56 YDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPVIL 114
Query: 121 VGNKVDL 127
VGNK DL
Sbjct: 115 VGNKSDL 121
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHI--VDYSEVDQ 69
+++L+GD GKT+ + ++ EF K T+ +V P + T+ + ++ D
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEF-----EKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC--LPIVLVGNKVDL 127
E ++ + I +++ R++ +P LV C +PIVL GNKVD+
Sbjct: 67 AGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDI 126
Query: 128 VDYSTVESSAKTLKNISEMFYY 149
D V++ + + YY
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY 147
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 8/140 (5%)
Query: 3 MKVSLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIV 62
+K + + VRILLLG + GKT+L+ L SE+ + P++ I V + ++
Sbjct: 10 LKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI---KSVQSQGFKLNVW 66
Query: 63 DYSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRL--SSHWLPFLRNCLVDTCLPIVL 120
D + + + L+Y V+D A R + L L +C+P+++
Sbjct: 67 DIGGQRKIRPYWRSYFENTDI--LIY-VIDSADRKRFEETGQELTELLEEEKLSCVPVLI 123
Query: 121 VGNKVDLVDYSTVESSAKTL 140
NK DL+ + A+ L
Sbjct: 124 FANKQDLLTAAPASEIAEGL 143
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVD 68
R +++ LG++ VGKTSLI + + F + TI D + + ++ D +
Sbjct: 5 RKFKLVFLGEQSVGKTSLITRFMYDSF-----DNTYQATIGIDFLSKTM--YLEDRTIRL 57
Query: 69 QTVDELTEE---------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIV 119
Q D +E I+ + +VY + + S + ++ W+ +R + I+
Sbjct: 58 QLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQ-TTKWIDDVRTERGSDVI-IM 115
Query: 120 LVGNKVDLVDYS--TVESSAKTLKNISEMF 147
LVGNK DL D ++E + K ++ MF
Sbjct: 116 LVGNKTDLADKRQVSIEEGERKAKELNVMF 145
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 20/147 (13%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
+++ LG++ VGKTSLI + + F + TI D + + ++ D + Q
Sbjct: 3 KLVFLGEQSVGKTSLITRFMYDSF-----DNTYQATIGIDFLSKTM--YLEDRTVRLQLW 55
Query: 72 DELTEE---------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVG 122
D +E I+ + V +VY + + S + ++ W+ +R + I+LVG
Sbjct: 56 DTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQ-TTKWIDDVRTERGSDVI-IMLVG 113
Query: 123 NKVDLVDYS--TVESSAKTLKNISEMF 147
NK DL D ++E + K ++ MF
Sbjct: 114 NKTDLADKRQVSIEEGERKAKELNVMF 140
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
Query: 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
VRILLLG + GKT+L+ L SE+ + P++ I V + ++ D +
Sbjct: 5 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI---KSVQSQGFKLNVWDIGGQRKI 61
Query: 71 VDELTEEIQKAHVICLVYSVVDDASIDRL--SSHWLPFLRNCLVDTCLPIVLVGNKVDLV 128
+ + L+Y V+D A R + L L +C+P+++ NK DL+
Sbjct: 62 RPYWRSYFENTDI--LIY-VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 118
Query: 129 DYSTVESSAKTL 140
+ A+ L
Sbjct: 119 TAAPASEIAEGL 130
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHI--VDYSEVDQ 69
+++L+GD GKT+ + ++ EF K T+ +V P + T+ + ++ D
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEF-----EKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 59
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC--LPIVLVGNKVDL 127
E ++ + I +++ R++ +P LV C +PIVL GNKVD+
Sbjct: 60 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDI 119
Query: 128 VDYSTVESSAKTLKNISEMFYY 149
D V++ + + YY
Sbjct: 120 KD-RKVKAKSIVFHRKKNLQYY 140
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 10/142 (7%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHI--VDYSEVDQ 69
+++L+GD GKT+ + ++ EF K TI +V P T+ + + D
Sbjct: 7 KLVLVGDGGTGKTTFVKRHLTGEF-----EKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 61
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC--LPIVLVGNKVDL 127
E ++ + I +++ R++ +P LV C +PIVL GNKVD
Sbjct: 62 AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVD- 120
Query: 128 VDYSTVESSAKTLKNISEMFYY 149
V V++ T + YY
Sbjct: 121 VKERKVKAKTITFHRKKNLQYY 142
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 10/142 (7%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHI--VDYSEVDQ 69
+++L+GD GKT+ + ++ EF K TI +V P T+ + + D
Sbjct: 6 KLVLVGDGGTGKTTFVKRHLTGEF-----EKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 60
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC--LPIVLVGNKVDL 127
E ++ + I +++ R++ +P LV C +PIVL GNKVD
Sbjct: 61 AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVD- 119
Query: 128 VDYSTVESSAKTLKNISEMFYY 149
V V++ T + YY
Sbjct: 120 VKERKVKAKTITFHRKKNLQYY 141
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHI--VDYSEVDQ 69
+++L+GD GKT+ + ++ EF K T+ +V P + T+ + ++ D
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEF-----EKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC--LPIVLVGNKVDL 127
E ++ + I +++ R++ +P LV C +PIVL GNKVD+
Sbjct: 67 AGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDI 126
Query: 128 VDYSTVESSAKTLKNISEMFYY 149
D V++ + + YY
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY 147
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPS--KAEEITIPPDVTPEMVPTHIVDYSEVD 68
+++++LGD VGKTSL+ V+++F + A+ +T V +V I D + ++
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLE 68
Query: 69 QTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVD--TCLPIVLVGNKVD 126
+ + A LV+ V + L S FL P V++GNK+D
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 127 L 127
L
Sbjct: 129 L 129
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHI--VDYSEVDQ 69
+++L+GD GKT+ + ++ EF K T+ +V P + T+ + ++ D
Sbjct: 14 KLVLVGDGGTGKTTFVKRHLTGEF-----EKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 68
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC--LPIVLVGNKVDL 127
E ++ + I +++ R++ +P LV C +PIVL GNKVD+
Sbjct: 69 AGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDI 128
Query: 128 VDYSTVESSAKTLKNISEMFYY 149
D V++ + + YY
Sbjct: 129 KD-RKVKAKSIVFHRKKNLQYY 149
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHI--VDYSEVDQ 69
+++L+GD GKT+ + ++ EF K T+ +V P + T+ + ++ D
Sbjct: 8 KLVLVGDGGTGKTTFVKRHLTGEF-----EKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 62
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC--LPIVLVGNKVDL 127
E ++ + I +++ R++ +P LV C +PIVL GNKVD+
Sbjct: 63 AGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDI 122
Query: 128 VDYSTVESSAKTLKNISEMFYY 149
D V++ + + YY
Sbjct: 123 KD-RKVKAKSIVFHRKKNLQYY 143
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHI--VDYSEVDQ 69
+++L+GD GKT+ + ++ EF K T+ +V P + T+ + ++ D
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEF-----EKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC--LPIVLVGNKVDL 127
E ++ + I +++ R++ +P LV C +PIVL GNKVD+
Sbjct: 67 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDI 126
Query: 128 VDYSTVESSAKTLKNISEMFYY 149
D V++ + + YY
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY 147
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHI--VDYSEVDQ 69
+++L+GD GKT+ + ++ EF K T+ +V P + T+ + ++ D
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEF-----EKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC--LPIVLVGNKVDL 127
E ++ + I +++ R++ +P LV C +PIVL GNKVD+
Sbjct: 67 AGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDI 126
Query: 128 VDYSTVESSAKTLKNISEMFYY 149
D V++ + + YY
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY 147
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHI--VDYSEVDQ 69
+++L+GD GKT+ + ++ EF K T+ +V P + T+ + ++ D
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGEF-----EKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 71
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC--LPIVLVGNKVDL 127
E ++ + I +++ R++ +P LV C +PIVL GNKVD+
Sbjct: 72 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDI 131
Query: 128 VDYSTVESSAKTLKNISEMFYY 149
D V++ + + YY
Sbjct: 132 KD-RKVKAKSIVFHRKKNLQYY 152
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHI--VDYSEVDQ 69
+++L+GD GKT+ + ++ EF K T+ +V P + T+ + ++ D
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEF-----EKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC--LPIVLVGNKVDL 127
E ++ + I +++ R++ +P LV C +PIVL GNKVD+
Sbjct: 67 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDI 126
Query: 128 VDYSTVESSAKTLKNISEMFYY 149
D V++ + + YY
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY 147
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 14/126 (11%)
Query: 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPD-VTPE-MVPTHIVDYSEVD 68
+++++LGD VGKTSL+ V+++F S + TI D +T E MV +V D
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKF-----SNQYKATIGADFLTKEVMVDDRLVTMQIWD 63
Query: 69 QTVDELTEEI-----QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVD--TCLPIVLV 121
E + + + A LV+ V + L S FL P V++
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 122 GNKVDL 127
GNK+DL
Sbjct: 124 GNKIDL 129
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 46/167 (27%)
Query: 12 RILLLGDRHVGKTSL--ILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQ 69
++LLLG VGK++L I V E+ PE ++A T + +VD E
Sbjct: 4 KVLLLGAPGVGKSALARIFGGV-EDGPE---AEAAGHTYDRSI--------VVDGEEASL 51
Query: 70 TVDELTEE------------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLP 117
V ++ E+ + A+VI VYSV D S ++ S + R D +P
Sbjct: 52 MVYDIWEQDGGRWLPGHCMAMGDAYVI--VYSVTDKGSFEKASELRVQLRRARQTDD-VP 108
Query: 118 IVLVGNKVDLV-----------------DYSTVESSAKTLKNISEMF 147
I+LVGNK DLV D +E+SA N+ +F
Sbjct: 109 IILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 155
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 46/167 (27%)
Query: 12 RILLLGDRHVGKTSL--ILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQ 69
++LLLG VGK++L I V E+ PE ++A T + +VD E
Sbjct: 9 KVLLLGAPGVGKSALARIFGGV-EDGPE---AEAAGHTYDRSI--------VVDGEEASL 56
Query: 70 TVDELTEE------------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLP 117
V ++ E+ + A+VI VYSV D S ++ S + R D +P
Sbjct: 57 MVYDIWEQDGGRWLPGHCMAMGDAYVI--VYSVTDKGSFEKASELRVQLRRARQTDD-VP 113
Query: 118 IVLVGNKVDLV-----------------DYSTVESSAKTLKNISEMF 147
I+LVGNK DLV D +E+SA N+ +F
Sbjct: 114 IILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 160
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 46/167 (27%)
Query: 12 RILLLGDRHVGKTSL--ILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQ 69
++LLLG VGK++L I V E+ PE ++A T + +VD E
Sbjct: 9 KVLLLGAPGVGKSALARIFGGV-EDGPE---AEAAGHTYDRSI--------VVDGEEASL 56
Query: 70 TVDELTEE------------IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLP 117
V ++ E+ + A+VI VYSV D S ++ S + R D +P
Sbjct: 57 MVYDIWEQDGGRWLPGHCMAMGDAYVI--VYSVTDKGSFEKASELRVQLRRARQTDD-VP 113
Query: 118 IVLVGNKVDLV-----------------DYSTVESSAKTLKNISEMF 147
I+LVGNK DLV D +E+SA N+ +F
Sbjct: 114 IILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 160
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 9/149 (6%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTV 71
+I+L+GD VGK++L+ +EF + SK+ + ++ I+ D
Sbjct: 9 KIVLIGDSGVGKSNLLSRFTRDEFN--LESKSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 72 DELTEEIQKAHV-----ICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
E I A+ LVY + S + + WL LR+ D+ + I+LVGNK D
Sbjct: 67 QERYRAITSAYYRGAVGALLVYDITKKNSFENIEK-WLKELRDN-ADSNIVILLVGNKSD 124
Query: 127 LVDYSTVESSAKTLKNISEMFYYAQKAVL 155
L + + T E + + + L
Sbjct: 125 LKHLRVINDNDATQYAKKEKLAFIETSAL 153
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 14/126 (11%)
Query: 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPD-VTPE-MVPTHIVDYSEVD 68
+++++LGD VGKTSL+ V+++F S + TI D +T E MV +V D
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKF-----SNQYKATIGADFLTKEVMVDDRLVTMQIWD 63
Query: 69 QTVDELTEEI-----QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVD--TCLPIVLV 121
E + + + A LV+ V + L S FL P V++
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 122 GNKVDL 127
GNK+DL
Sbjct: 124 GNKIDL 129
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 18/154 (11%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEF-PELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++G R VGK++L + L+ F E P+ + + E I+D + ++
Sbjct: 5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY 130
+ ++ V+++ + S + + + R D +P+VLVGNK DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD-VPMVLVGNKCDLAAR 123
Query: 131 ST----------------VESSAKTLKNISEMFY 148
+ +E+SAKT + + + FY
Sbjct: 124 TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 53/227 (23%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEVD 68
+ +++ L+GD GKTSL+ L+ E F E T +V + P + E D
Sbjct: 40 QEIKVHLIGDGMAGKTSLLKQLIGETF-----DPKESQTHGLNVVTKQAPN--IKGLEND 92
Query: 69 QTVDEL---------TEEIQKAHVICL----VYSVVDDASIDRLSSHWLPFLRNCLVDTC 115
+ E E + +H + VY ++ D+ D +WL + +
Sbjct: 93 DELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKS- 151
Query: 116 LPIVLVGNKVDLVDYSTVES-----------------SAKTLKNISEMFYYAQKAVLH-- 156
P+++V NK+D +E S K + + + AVLH
Sbjct: 152 -PVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPD 210
Query: 157 -----PMAPIYISDKQEL----TPECIKALTRIFKVCDLDNDNLLSD 194
P+AP +I K++L T + T + K+C ND+ ++D
Sbjct: 211 SIYGTPLAPSWIKVKEKLVEATTAQRYLNRTEVEKIC---NDSGITD 254
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 12/143 (8%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEF-PELVPSKAEEITIPPDVTPEMVPTHI--VDYSEVD 68
+++L+GD GKT+ + ++ EF + VP T+ +V P + T+ + ++ D
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVP------TLGVEVHPLVFHTNRGPIKFNVWD 65
Query: 69 QTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC--LPIVLVGNKVD 126
E ++ + I +++ R++ +P LV C +PIVL GNKVD
Sbjct: 66 TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVD 125
Query: 127 LVDYSTVESSAKTLKNISEMFYY 149
+ D V++ + + YY
Sbjct: 126 IKD-RKVKAKSIVFHRKKNLQYY 147
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 37/170 (21%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEV---- 67
+ +++GD VGK+ L+L + F ++TI + M+ +D ++
Sbjct: 12 KYIIIGDTGVGKSCLLLQFTDKRF-----QPVHDLTIGVEFGARMI---TIDGKQIKLQI 63
Query: 68 -DQTVDELTEEIQKAHV-----ICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLV 121
D E I +++ LVY + + + L++ WL R ++ + I+L+
Sbjct: 64 WDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTT-WLEDARQ-HSNSNMVIMLI 121
Query: 122 GNKVDLVDYSTV-----------------ESSAKTLKNISEMFYYAQKAV 154
GNK DL V E+SAKT N+ E F K +
Sbjct: 122 GNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 171
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 33/161 (20%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEF-PELVPSKAEEITIPPDVTPEMVPTH-------IVD 63
++LL+G+ VGKTS + + F P V T+ D + V H I D
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVS------TVGIDFKVKTVYRHDKRIKLQIWD 77
Query: 64 YSEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGN 123
+ ++ T + A L+Y + + S + W ++ D ++LVGN
Sbjct: 78 TAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQD-WATQIKTYSWDNA-QVILVGN 135
Query: 124 KVDLVDYSTV-----------------ESSAKTLKNISEMF 147
K DL D V E+SAK N+ ++F
Sbjct: 136 KCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKA----EEITIPPDVTPEMVPTHIVDYSEV 67
+++L+GD VGK++L+ EF + SK+ E T V + + I D + +
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFN--LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL 127
++ + + A LVY + + + + WL LR+ D+ + I+LVGNK DL
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRD-HADSNIVIMLVGNKSDL 146
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKA----EEITIPPDVTPEMVPTHIVDYSEV 67
+++L+GD VGK++L+ EF + SK+ E T V + + I D + +
Sbjct: 10 KVVLIGDSGVGKSNLLSRFTRNEFN--LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL 127
++ + + A LVY + + + + WL LR+ D+ + I+LVGNK DL
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRD-HADSNIVIMLVGNKSDL 125
>pdb|1H6F|A Chain A, Human Tbx3, A Transcription Factor Responsible For Ulnar-
Mammary Syndrome, Bound To A Palindromic Dna Site
pdb|1H6F|B Chain B, Human Tbx3, A Transcription Factor Responsible For Ulnar-
Mammary Syndrome, Bound To A Palindromic Dna Site
Length = 193
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 22/115 (19%)
Query: 449 PPYTINTTTVYGQEKYLVLKEILVRDEQLPVLLPVDVDCDKYFSTSKIPVMLVAGKSDMP 508
PP+ + + + + KY++L +I+ D DC F S+ +VAGK+D P
Sbjct: 36 PPFKVRCSGLDKKAKYILLMDIIAAD-----------DCRYKFHNSR---WMVAGKAD-P 80
Query: 509 RARQDYLMQPDIFCETH----KLSPAHSFSAANN--DREVFVKLATMAAF-PRFH 556
+ + PD K+ H NN D+ F L +M + PRFH
Sbjct: 81 EMPKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFH 135
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 10/142 (7%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHI--VDYSEVDQ 69
+++L+GD GKT+ + ++ EF K TI +V P T+ + + D
Sbjct: 14 KLVLVGDGGTGKTTFVKRHLTGEF-----EKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 68
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC--LPIVLVGNKVDL 127
E ++ + I +++ R++ +P LV C +PIVL GNKVD
Sbjct: 69 AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVD- 127
Query: 128 VDYSTVESSAKTLKNISEMFYY 149
V V++ T + YY
Sbjct: 128 VKERKVKAKTITFHRKKNLQYY 149
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 18/94 (19%)
Query: 78 IQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYSTV---- 133
++ H LV+++ D S + + + LR D P+VLVGNK DL V
Sbjct: 78 MRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD-FPVVLVGNKADLESQRQVPRSE 136
Query: 134 -------------ESSAKTLKNISEMFYYAQKAV 154
E+SAK N+ E F +AV
Sbjct: 137 ASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEF-PELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++G VGK++L + L+ F E P+ + + E I+D + ++
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL--- 127
+ ++ V+++ + S + + H+ ++ +P+VLVGNK DL
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIH-HYREQIKRVKDSEDVPMVLVGNKSDLPSR 124
Query: 128 -VDYST------------VESSAKTLKNISEMFY 148
VD +E+SAKT + + + FY
Sbjct: 125 TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFY 158
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEF-PELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++G VGK++L + L+ F E P+ + + E I+D + ++
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL--- 127
+ ++ V+++ + S + + H+ ++ +P+VLVGNK DL
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIH-HYREQIKRVKDSEDVPMVLVGNKCDLPSR 124
Query: 128 -VDYST------------VESSAKTLKNISEMFY 148
VD +E+SAKT + + + FY
Sbjct: 125 TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFY 158
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELV-PSKAEEITIPPDVTPEMVPTHIVDYSEV 67
++ +I +LG R VGK+SL + V +F + P+ T V + +VD +
Sbjct: 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQ 62
Query: 68 DQ-TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC----LPIVLVG 122
D+ ++ T I I LVYSV S + + + L+D +PI+LVG
Sbjct: 63 DEYSIFPQTYSIDINGYI-LVYSVTSIKSFEVIK-----VIHGKLLDMVGKVQIPIMLVG 116
Query: 123 NKVDL 127
NK DL
Sbjct: 117 NKKDL 121
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 41/170 (24%), Positives = 68/170 (40%), Gaps = 37/170 (21%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHIVDYSEV---- 67
+ +++GD VGK+ L+L + F ++TI + MV +D ++
Sbjct: 23 KYIIIGDTGVGKSCLLLQFTDKRF-----QPVHDLTIGVEFGARMVN---IDGKQIKLQI 74
Query: 68 -DQTVDELTEEIQKAHV-----ICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLV 121
D E I +++ LVY + + + L+S WL R + + I+L+
Sbjct: 75 WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTS-WLEDARQ-HSSSNMVIMLI 132
Query: 122 GNKVDLVDYSTV-----------------ESSAKTLKNISEMFYYAQKAV 154
GNK DL V E+SAKT N+ E F K +
Sbjct: 133 GNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182
>pdb|1H4B|A Chain A, Solution Structure Of The Birch Pollen Allergen Bet V 4
Length = 84
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 301 LFYRFDKDGDGALSPEEQAR----LFSLCPPECPPWTDREMRAMVATNSKGWITMQGF 354
+F RFD +GDG +S E L S+ P E + M A + T+ G+I+ Q F
Sbjct: 14 IFKRFDANGDGKISAAELGEALKTLGSITPDEV-----KHMMAEIDTDGDGFISFQEF 66
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPD-VTPE-MVPTHIVDYSEVD 68
+++++LGD VGKTSL+ V+++F S + TI D +T E MV +V D
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKF-----SNQYKATIGADFLTKEVMVDDRLVTMQIWD 63
Query: 69 QTVDELTEEI-----QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVD--TCLPIVLV 121
E + + + A LV+ V + L S FL P V++
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 122 GNKVDL 127
GNK+D
Sbjct: 124 GNKIDF 129
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKA----EEITIPPDVTPEMVPTHIVDYSEV 67
+++L+GD VGK++L+ EF + SK+ E T V + + I D + +
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFN--LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL 127
++ + + A LVY + + + + WL LR+ D+ + I LVGNK DL
Sbjct: 65 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRD-HADSNIVIXLVGNKSDL 122
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHI--VDYSEVDQ 69
+++L+GD GKT+ + ++ EF K T+ +V P + T+ + ++ D
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEF-----EKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC--LPIVLVGNKVDL 127
E ++ + I +++ R++ +P LV C +PIVL GNKVD+
Sbjct: 67 AGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDI 126
Query: 128 VDYSTVESSAKTLKNISEMFYY 149
D V++ + + YY
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY 147
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 32.7 bits (73), Expect = 0.53, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKA----EEITIPPDVTPEMVPTHIVDYSEV 67
+++L+GD VGK++L+ EF + SK+ E T V + + I D + +
Sbjct: 13 KVVLIGDSGVGKSNLLSRFTRNEFN--LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL 127
++ + + A LVY + + + + WL LR+ D+ + I LVGNK DL
Sbjct: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRD-HADSNIVIXLVGNKSDL 128
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELV-PSKAEEITIPPDVTPEMVPTHIVDYSEV 67
++ +I +LG R VGK+SL + V +F + P+ T V + +VD +
Sbjct: 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 64
Query: 68 DQ-TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC----LPIVLVG 122
D+ ++ T I I LVYSV S + + + L+D +PI+LVG
Sbjct: 65 DEYSIFPQTYSIDINGYI-LVYSVTSIKSFEVIK-----VIHGKLLDMVGKVQIPIMLVG 118
Query: 123 NKVDL 127
NK DL
Sbjct: 119 NKKDL 123
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELV-PSKAEEITIPPDVTPEMVPTHIVDYSEVDQ- 69
+I +LG R VGK+SL + V +F + P+ T V + +VD + D+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC----LPIVLVGNKV 125
++ T I I LVYSV S + + + L+D +PI+LVGNK
Sbjct: 63 SIFPQTYSIDINGYI-LVYSVTSIKSFEVIK-----VIHGKLLDMVGKVQIPIMLVGNKK 116
Query: 126 DL 127
DL
Sbjct: 117 DL 118
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 298 LTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPW 332
L F +FD DG G ++ EE RLF + + W
Sbjct: 399 LLAAFQQFDSDGSGKITNEELGRLFGVTEVDDETW 433
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 9 RNVRILLLGDRHVGKTSLILSLVSEEFPELV-PSKAEEITIPPDVTPEMVPTHIVDYSEV 67
++ +I +LG R VGK+SL + V +F + P+ T V + +VD +
Sbjct: 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 64
Query: 68 DQ-TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC----LPIVLVG 122
D+ ++ T I I LVYSV S + + + L+D +PI+LVG
Sbjct: 65 DEYSIFPQTYSIDINGYI-LVYSVTSIKSFEVIK-----VIHGKLLDMVGKVQIPIMLVG 118
Query: 123 NKVDL 127
NK DL
Sbjct: 119 NKKDL 123
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 32.3 bits (72), Expect = 0.73, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 13 ILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPP-DVTPEMVPTHIVDYSEVDQT 70
+LL+GD VGK+ L+L + + E + + + I ++ + + I D + ++
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL 127
+ + AH I +VY V D S + + WL + + + +LVGNK DL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASEN-VNKLLVGNKCDL 115
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 32.3 bits (72), Expect = 0.81, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKA----EEITIPPDVTPEMVPTHIVDYSEV 67
+++L+GD VGK++L+ EF + SK+ E T V + + I D +
Sbjct: 22 KVVLIGDSGVGKSNLLSRFTRNEFN--LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL 127
++ + + A LVY + + + + WL LR+ D+ + I+LVGNK DL
Sbjct: 80 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRD-HADSNIVIMLVGNKSDL 137
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 32.3 bits (72), Expect = 0.81, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKA----EEITIPPDVTPEMVPTHIVDYSEV 67
+++L+GD VGK++L+ EF + SK+ E T V + + I D +
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFN--LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 68 DQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL 127
++ + + A LVY + + + + WL LR+ D+ + I+LVGNK DL
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRD-HADSNIVIMLVGNKSDL 146
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 39/175 (22%)
Query: 1 MVMKVSLRRNVRILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTH 60
+V + S R +++ LLGD VGK+S++ V + F + I P + +
Sbjct: 14 LVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHF---------DHNISPTIGASFMTKT 64
Query: 61 IVDYSEVDQTVDELTEEIQKAHVIC-----------LVYSVVDDASIDRLSSHWLPFLRN 109
+ +E+ + + T ++ H + +VY + S L W+ L+
Sbjct: 65 VPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKK-WVKELKE 123
Query: 110 CLVDTCLPIVLVGNKVDLVDYS-----------------TVESSAKTLKNISEMF 147
+ + + + GNK DL D VE+SAK NI E+F
Sbjct: 124 HGPENIV-MAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELF 177
>pdb|2JNX|A Chain A, Nmr Derived Solution Structure Of An Ef-Hand Calcium
Binding Protein From Entamoeba Histolytica
Length = 134
Score = 32.0 bits (71), Expect = 0.93, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 289 ELSDKGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVATNSKGW 348
+LSD+ + L L+ D DGDG L+ EE F E D+ M+A N G+
Sbjct: 69 DLSDE-KVGLKILYKLMDADGDGKLTKEEVTTFFKKFGYE--KVVDQIMKA--DANGDGY 123
Query: 349 ITMQGFLCY 357
IT++ FL +
Sbjct: 124 ITLEEFLAF 132
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 66/154 (42%), Gaps = 18/154 (11%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEF-PELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++G VGK++L + L+ F E P+ + + E I+D + ++
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY 130
+ ++ V+++ + S + + + R D +P+VLVGNK DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD-VPMVLVGNKCDLAGR 123
Query: 131 ST----------------VESSAKTLKNISEMFY 148
+ +E+SAKT + + + FY
Sbjct: 124 TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|2OPO|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|C Chain C, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|D Chain D, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
Length = 86
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 301 LFYRFDKDGDGALSPEEQA----RLFSLCPPECPPWTDREMRAMVATNSKGWITMQGF 354
+F RFD +GDG +S E L S+ P E R M A + T+ G+I+ F
Sbjct: 16 IFKRFDTNGDGKISSSELGDALKTLGSVTPDEV-----RRMMAEIDTDGDGFISFDEF 68
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIP-----PDVTPEMVPTHIVDYSE 66
+++L+GD VGKT L++ F L + + I DV V + D +
Sbjct: 12 KVMLVGDSGVGKTCLLVRFKDGAF--LAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 69
Query: 67 VDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD 126
++ + AH + L+Y V + AS D + + WL + + ++L+GNKVD
Sbjct: 70 QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQA-WLTEIHE-YAQHDVALMLLGNKVD 127
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 23/145 (15%)
Query: 23 KTSLILSLVSEEFPELVPSKAEEI---TIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQ 79
K++L + V+ F E E+ I D +P ++ I+D + +Q I+
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVL--EILDTAGTEQFASMRDLYIK 73
Query: 80 KAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDYST------- 132
LVYS+V+ S + +R + +P++LVGNKVDL
Sbjct: 74 NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK-VPVILVGNKVDLESEREVSSSEGR 132
Query: 133 ----------VESSAKTLKNISEMF 147
+E+SAK+ + E+F
Sbjct: 133 ALAEEWGCPFMETSAKSKTMVDELF 157
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 33/177 (18%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVT-------PEMVPTHIVDY 64
+++L+GD VGKT ++ + F E S TI D T + V I D
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAFSERQGS-----TIGVDFTMKTLEIQGKRVKLQIWDT 85
Query: 65 SEVDQTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNK 124
+ ++ + A+ L Y + +S + HW+ +R + + +L+GNK
Sbjct: 86 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRK-YAGSNIVQLLIGNK 143
Query: 125 VDLVDYSTV------------------ESSAKTLKNISEMFY-YAQKAVLHPMAPIY 162
DL + V E+SAK N+ E F A + ++ P++
Sbjct: 144 SDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLF 200
>pdb|1HQV|A Chain A, Structure Of Apoptosis-Linked Protein Alg-2
Length = 191
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 16/105 (15%)
Query: 295 QQFLTTLFYRFDKDGDGALSPEE-QARLFSLCPPECPPWTDREMRAMVATNSKGWITMQG 353
Q FL +F R DKD G +S E Q L + P T R + +M +K +
Sbjct: 25 QSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 84
Query: 354 FLCYWILTT---------------LFNVNKTLEYLAYFGYPITDR 383
F W T + + N+ + L+ FGY ++D+
Sbjct: 85 FTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQ 129
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 66/154 (42%), Gaps = 18/154 (11%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEF-PELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++G VGK++L + L+ F E P+ + + E I+D + ++
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY 130
+ ++ V+++ + S + + + R D +P+VLVGNK DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD-VPMVLVGNKCDLAAR 123
Query: 131 ST----------------VESSAKTLKNISEMFY 148
+ +E+SAKT + + + FY
Sbjct: 124 TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 10/142 (7%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPELVPSKAEEITIPPDVTPEMVPTHI--VDYSEVDQ 69
+++L+GD GKT+ + ++ E K T+ +V P + T+ + ++ D
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGE-----SEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 71
Query: 70 TVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC--LPIVLVGNKVDL 127
E ++ + I +++ R++ +P LV C +PIVL GNKVD+
Sbjct: 72 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDI 131
Query: 128 VDYSTVESSAKTLKNISEMFYY 149
D V++ + + YY
Sbjct: 132 KD-RKVKAKSIVFHRKKNLQYY 152
>pdb|1CLM|A Chain A, Structure Of Paramecium Tetraurelia Calmodulin At 1.8
Angstroms Resolution
Length = 148
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 61/157 (38%), Gaps = 16/157 (10%)
Query: 167 QELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSRDSLEDVKIVIRKNIN 226
QELT E I F + D D D ++ KEL R P + L+D +I +
Sbjct: 2 QELTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNP-TEAELQD---MINEVDA 57
Query: 227 DGVSANNCITLNGFLFLHNLFMQRGRSHTTWT-VLRKFGYNEDLQIS-KEFLHPPLNIPA 284
DG N I FL L M+ S + F + + IS E H N+
Sbjct: 58 DG---NGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGE 114
Query: 285 TCTAELSDKGQQFLTTLFYRFDKDGDGALSPEEQARL 321
T + D+ + D DGDG ++ EE R+
Sbjct: 115 KLTDDEVDE-------MIREADIDGDGHINYEEFVRM 144
>pdb|2ZRS|A Chain A, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|B Chain B, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|C Chain C, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|D Chain D, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|E Chain E, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|F Chain F, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|G Chain G, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|H Chain H, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|C Chain C, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|D Chain D, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|E Chain E, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|F Chain F, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|G Chain G, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|H Chain H, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Length = 168
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 16/105 (15%)
Query: 295 QQFLTTLFYRFDKDGDGALSPEE-QARLFSLCPPECPPWTDREMRAMVATNSKGWITMQG 353
Q FL +F R DKD G +S E Q L + P T R + +M +K +
Sbjct: 2 QSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 61
Query: 354 FLCYWILTT---------------LFNVNKTLEYLAYFGYPITDR 383
F W T + + N+ + L+ FGY ++D+
Sbjct: 62 FTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQ 106
>pdb|2ZNE|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
pdb|2ZNE|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
Length = 169
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 16/105 (15%)
Query: 295 QQFLTTLFYRFDKDGDGALSPEE-QARLFSLCPPECPPWTDREMRAMVATNSKGWITMQG 353
Q FL +F R DKD G +S E Q L + P T R + +M +K +
Sbjct: 3 QSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 62
Query: 354 FLCYWILTT---------------LFNVNKTLEYLAYFGYPITDR 383
F W T + + N+ + L+ FGY ++D+
Sbjct: 63 FTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQ 107
>pdb|2ZN8|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Alg-2
Length = 190
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 16/105 (15%)
Query: 295 QQFLTTLFYRFDKDGDGALSPEE-QARLFSLCPPECPPWTDREMRAMVATNSKGWITMQG 353
Q FL +F R DKD G +S E Q L + P T R + +M +K +
Sbjct: 24 QSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 83
Query: 354 FLCYWILTT---------------LFNVNKTLEYLAYFGYPITDR 383
F W T + + N+ + L+ FGY ++D+
Sbjct: 84 FTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQ 128
>pdb|2ZN9|A Chain A, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZN9|B Chain B, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZND|A Chain A, Crystal Structure Of Ca2+-Free Form Of Des3-20alg-2
Length = 172
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 16/105 (15%)
Query: 295 QQFLTTLFYRFDKDGDGALSPEE-QARLFSLCPPECPPWTDREMRAMVATNSKGWITMQG 353
Q FL +F R DKD G +S E Q L + P T R + +M +K +
Sbjct: 6 QSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 65
Query: 354 FLCYWILTT---------------LFNVNKTLEYLAYFGYPITDR 383
F W T + + N+ + L+ FGY ++D+
Sbjct: 66 FTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQ 110
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 66/154 (42%), Gaps = 18/154 (11%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEF-PELVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++++G VGK++L + L+ F E P+ + + E I+D + ++
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLVDY 130
+ ++ V+++ + S + + + R D +P+VLVGNK DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD-VPMVLVGNKCDLAAR 123
Query: 131 ST----------------VESSAKTLKNISEMFY 148
+ +E+SAKT + + + FY
Sbjct: 124 TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 76/154 (49%), Gaps = 20/154 (12%)
Query: 7 LRRNVRILLLGDRHVGKTSLILSLVSEEFPELV---PSKAEEITIPPDVTPEMVPTHIVD 63
LR +++ ++G +VGK+SL L+ S+ +V P ++ + + +P ++D
Sbjct: 221 LRTGLKVAIVGRPNVGKSSL-LNAWSQSDRAIVTDLPGTTRDV-VESQLVVGGIPVQVLD 278
Query: 64 YSEVDQTVDELTEEI------QKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC-L 116
+ + +T D++ E+I Q A+ LV +D A+ W +
Sbjct: 279 TAGIRETSDQV-EKIGVERSRQAANTADLVLLTIDAAT------GWTTGDQEIYEQVKHR 331
Query: 117 PIVLVGNKVDLVDYSTVESSAKTLKNISEMFYYA 150
P++LV NK+DLV+ + +S + +NI+++ + A
Sbjct: 332 PLILVMNKIDLVEKQLI-TSLEYPENITQIVHTA 364
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 21/144 (14%)
Query: 23 KTSLILSLVSEEFPEL-VPSKAEEITIPPDVTPEMVPTHIVDYSEVDQTVDELTEEIQKA 81
K+SL+L V F + +P+ + + I D + Q I K
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 82 HVICLVYSVVDDASIDRLSSHW--LPFLRNCLVDTCLPIVLVGNKVDLVDYST------- 132
H LV+SV S++ L + + ++ + D +P++LVGNK D
Sbjct: 81 HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED--IPVMLVGNKCDETQREVDTREAQA 138
Query: 133 ---------VESSAKTLKNISEMF 147
+E+SAK N+ E+F
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELF 162
>pdb|1TCF|A Chain A, Crystal Structure Of Calcium-Saturated Rabbit Skeletal
Troponin C
pdb|1TN4|A Chain A, Four Calcium Tnc
pdb|2TN4|A Chain A, Four Calcium Tnc
Length = 159
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 293 KGQQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPWTDREMRAMVA---TNSKGWI 349
K ++ L LF FD++ DG + EE A +F TD E+ +++ N+ G I
Sbjct: 90 KSEEELAELFRIFDRNADGYIDAEELAEIFRASGEHV---TDEEIESLMKDGDKNNDGRI 146
Query: 350 TMQGFL 355
FL
Sbjct: 147 DFDEFL 152
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPEMVPTHIVDYSEVD-- 68
+I+++GD GKT+L+ + FPE VP+ E T ++ + + + D S
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68
Query: 69 QTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL- 127
V L+ A +IC + + ++D + W ++ +T ++LVG K DL
Sbjct: 69 DNVRPLSYPDSDAVLIC--FDISRPETLDSVLKKWKGEIQEFCPNT--KMLLVGCKSDLR 124
Query: 128 VDYSTV 133
D ST+
Sbjct: 125 TDVSTL 130
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPEMVPTHIVDYSEVD-- 68
+I+++GD GKT+L+ + FPE VP+ E T ++ + + + D S
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 84
Query: 69 QTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL- 127
V L+ A +IC + + ++D + W ++ +T ++LVG K DL
Sbjct: 85 DNVRPLSYPDSDAVLIC--FDISRPETLDSVLKKWKGEIQEFCPNT--KMLLVGCKSDLR 140
Query: 128 VDYSTV 133
D ST+
Sbjct: 141 TDVSTL 146
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPEMVPTHIVDYSEVD-- 68
+I+++GD GKT+L+ + FPE VP+ E T ++ + + + D S
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 89
Query: 69 QTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL- 127
V L+ A +IC + + ++D + W ++ +T ++LVG K DL
Sbjct: 90 DNVRPLSYPDSDAVLIC--FDISRPETLDSVLKKWKGEIQEFCPNT--KMLLVGCKSDLR 145
Query: 128 VDYSTV 133
D ST+
Sbjct: 146 TDVSTL 151
>pdb|3KHE|A Chain A, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
pdb|3KHE|B Chain B, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
Length = 191
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 295 QQFLTTLFYRFDKDGDGALSPEEQARLFSLCPPECPPW 332
++ L F +FD DG G ++ EE RLF + + W
Sbjct: 122 RERLLAAFQQFDSDGSGKITNEELGRLFGVTEVDDETW 159
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 22/168 (13%)
Query: 11 VRILLLGDRHVGKTSLILSLVSEEFPELVPSK-AEEITIPP-DVTPEMVPTHIVDYSEVD 68
++++++G R VGKTSL+ + F E S + I ++ + + I D + +
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 69 QTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVD-- 126
+ + + A I LVY + + D L W+ + + ++LVGNK+D
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYASEDA-ELLLVGNKLDCE 144
Query: 127 ----------------LVDYSTVESSAKTLKNISEMFYYAQKAVLHPM 158
+ E+SAK N+ E+F +L M
Sbjct: 145 TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192
>pdb|1AYN|3 Chain 3, Human Rhinovirus 16 Coat Protein
pdb|1AYM|3 Chain 3, Human Rhinovirus 16 Coat Protein At High Resolution
pdb|1QJU|3 Chain 3, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Vp61209
pdb|1QJX|3 Chain 3, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Win68934
pdb|1QJY|3 Chain 3, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Vp65099
pdb|1D3E|3 Chain 3, Cryo-Em Structure Of Human Rhinovirus 16 (Hrv16) Complexed
With A Two-Domain Fragment Of Its Cellular Receptor,
Intercellular Adhesion Molecule-1 (D1d2-Icam-1).
Implications For Virus-Receptor Interactions. Alpha
Carbons Only
pdb|1C8M|3 Chain 3, Refined Crystal Structure Of Human Rhinovirus 16 Complexed
With Vp63843 (Pleconaril), An Anti-Picornaviral Drug
Currently In Clinical Trials
pdb|1NCR|C Chain C, The Structure Of Rhinovirus 16 When Complexed With
Pleconaril, An Antiviral Compound
pdb|1ND2|C Chain C, The Structure Of Rhinovirus 16
pdb|1ND3|C Chain C, The Structure Of Hrv16, When Complexed With Pleconaril, An
Antiviral Compound
Length = 238
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 5/126 (3%)
Query: 106 FLRNCLVDTCLPIVLVGNKVDLVDYSTVESSAKTLKNISEMFYYAQKAVLHPMAPIYISD 165
+ C VDT +PI + + V TV S +T K E+F HP+A I +
Sbjct: 43 LIEMCQVDTLIPINSTQSNIGNVSMYTVTLSPQT-KLAEEIFAIKVDIASHPLATTLIGE 101
Query: 166 KQELTPECIKALTRIFKVCDLDNDNLLSDKELNAFQRRCFDAPLSR-DSLEDVKIVIRKN 224
+L F C N L K L A+ P SR +++ +V
Sbjct: 102 IASYFTHWTGSLRFSFMFCGTANTTL---KVLLAYTPPGIGKPRSRKEAMLGTHVVWDVG 158
Query: 225 INDGVS 230
+ VS
Sbjct: 159 LQSTVS 164
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPEMVPTHIVDYSEVDQT 70
+++L+GD GKT+++ L + +PE VP+ E T + + V + D S
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 71 VDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC--LPIVLVGNKVDL- 127
+ + + L + + ++D W R ++D C ++L+G K DL
Sbjct: 89 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKW----RTEILDYCPSTRVLLIGCKTDLR 144
Query: 128 VDYSTV 133
D ST+
Sbjct: 145 TDLSTL 150
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 20/130 (15%)
Query: 8 RRNVRILLLGDRHVGKTSLILSLVSEEFPELVPS---KAEEITIPPDVTPEMVPTHIVDY 64
+++ +++ LG + GKT+L+ L + + VP+ +EE+TI + +
Sbjct: 33 KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG-----------MTF 81
Query: 65 SEVDQTVDELTEEIQKAHV--ICLVYSVVDDASIDRLSSHWLPFLRNCLVDTCL---PIV 119
+ D E + K ++ I + +VD A RL + L + D + PI+
Sbjct: 82 TTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVE-LNALMTDETISNVPIL 140
Query: 120 LVGNKVDLVD 129
++GNK+D D
Sbjct: 141 ILGNKIDRTD 150
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 85 CLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLV 128
+VYSV D AS + + LR P++LV NKVDL+
Sbjct: 94 LIVYSVTDKASFEHVDRFHQLILR-VKDRESFPMILVANKVDLM 136
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 85 CLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLV 128
+VYSV D AS + + LR P++LV NKVDL+
Sbjct: 94 LIVYSVTDKASFEHVDRFHQLILR-VKDRESFPMILVANKVDLM 136
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 85 CLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLV 128
+VYSV D AS + + LR P++LV NKVDL+
Sbjct: 89 LIVYSVTDKASFEHVDRFHQLILR-VKDRESFPMILVANKVDLM 131
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 85 CLVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDLV 128
+VYSV D AS + + LR P++LV NKVDL+
Sbjct: 94 LIVYSVTDKASFEHVDRFHQLILR-VKDRESFPMILVANKVDLM 136
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 28.9 bits (63), Expect = 7.8, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 18/80 (22%)
Query: 86 LVYSVVDDASIDRLSSHWLPFLRNCLVDTCLPIVLVGNKVDL-----------------V 128
LV+SV D S + + LR D P++L+GNK DL +
Sbjct: 82 LVFSVTDRGSFEEIYKFQRQILRVKDRDE-FPMILIGNKADLDHQRQVTQEEGQQLARQL 140
Query: 129 DYSTVESSAKTLKNISEMFY 148
+ +E+SAK N+ + F+
Sbjct: 141 KVTYMEASAKIRMNVDQAFH 160
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 28.9 bits (63), Expect = 7.8, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 116 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 164
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPEMVPTHIVDYSEVD-- 68
+++L+GD GKT+++ L + +PE VP+ E T + + V + D S
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 71
Query: 69 QTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC--LPIVLVGNKVD 126
V L A ++C + + ++D W R ++D C ++L+G K D
Sbjct: 72 DNVRPLCYSDSDAVLLC--FDISRPETVDSALKKW----RTEILDYCPSTRVLLIGCKTD 125
Query: 127 L-VDYSTV 133
L D ST+
Sbjct: 126 LRTDLSTL 133
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 114 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 162
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 114 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 162
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 115 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 163
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 114 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 162
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 102 HWLPFLRNCLVDTCLPIVLVGNKVDL----VDYST------------VESSAKTLKNISE 145
H+ ++ +P+VLVGNK DL VD +E+SAKT + + +
Sbjct: 96 HYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDD 155
Query: 146 MFY 148
FY
Sbjct: 156 AFY 158
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 102 HWLPFLRNCLVDTCLPIVLVGNKVDL----VDYST------------VESSAKTLKNISE 145
H+ ++ +P+VLVGNK DL VD +E+SAKT + + +
Sbjct: 96 HYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDD 155
Query: 146 MFY 148
FY
Sbjct: 156 AFY 158
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 12 RILLLGDRHVGKTSLILSLVSEEFPE-LVPSKAEEITIPPDVTPEMVPTHIVDYSEVD-- 68
+++L+GD GKT+++ L + +PE VP+ E T + + V + D S
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 72
Query: 69 QTVDELTEEIQKAHVICLVYSVVDDASIDRLSSHWLPFLRNCLVDTC--LPIVLVGNKVD 126
V L A ++C + + ++D W R ++D C ++L+G K D
Sbjct: 73 DNVRPLCYSDSDAVLLC--FDISRPETVDSALKKW----RTEILDYCPSTRVLLIGCKTD 126
Query: 127 L-VDYSTV 133
L D ST+
Sbjct: 127 LRTDLSTL 134
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 16/49 (32%)
Query: 116 LPIVLVGNKVDLVDYST----------------VESSAKTLKNISEMFY 148
+P+VLVGNK DL + +E+SAKT + + + FY
Sbjct: 109 VPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,889,058
Number of Sequences: 62578
Number of extensions: 740820
Number of successful extensions: 2743
Number of sequences better than 100.0: 306
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 287
Number of HSP's that attempted gapping in prelim test: 2423
Number of HSP's gapped (non-prelim): 384
length of query: 608
length of database: 14,973,337
effective HSP length: 104
effective length of query: 504
effective length of database: 8,465,225
effective search space: 4266473400
effective search space used: 4266473400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)